organic compounds
A third polymorph of 1,4-bis(1H-benzimidazol-2-yl)benzene
aKey Laboratory of Functional Organometallic Materials of General Colleges and Universities in Hunan Province, Department of Chemistry and Materials Science, Hengyang Normal University, Hengyang 421008, People's Republic of China
*Correspondence e-mail: w.w.fu@hotmail.com
The title compound, C20H14N4, is a new polymorph of the previously reported structures, which were orthorhombic, Pbca [Bei et al. (2000). Acta Cryst. C56, 718–719] and monoclinic, P21/c [Dudd et al. (2003). Green Chem. 5, 187–192]. The consists of two independent molecules in which the dihedral angels between the central benzene ring and the outer benzimidazole ring systems are 16.81 (10) and 14.23 (10)° in one molecule and 26.09 (10) and 37.29 (10)° in the other. In the crystal, molecules are linked by N—H⋯N and C—H⋯N hydrogen bonds into a tape running along the c-axis direction.
Related literature
For the synthesis of the title compound, see: Alcalde et al. (1992); Zhao et al. (2012); Zhuang et al. (2011). For the previously reported structures of the title compound, see: Bei et al. (2000); Dudd et al. (2003). For the structures of the title compound with solvent molecules, see: Wu & Hu (2009); Su et al. (2011).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 2008); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536814011179/is5361sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814011179/is5361Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814011179/is5361Isup3.cml
1,4-Bis(benzimidazol-2-yl)benzene was synthesized according to literature method (Alcalde et al., 1992; Zhao et al., 2012) and single crystals suitable for X-ray diffraction were obtained by slow evaporation of DMF solution at room temperature.
N-bound H atoms were located in a difference Fourier map and were refined with bond-length restraints of N—H = 0.86 (2) Å. C-bound H atoms were positioned geometrically and treated as riding atoms with C—H = 0.93 Å, and with Uiso(H) = 1.2Ueq(C). Rigid-bond restraints (DELU) were applied for atoms C11 and C14.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and publCIF (Westrip, 2010).Fig. 1. An ORTEP drawing for the asymmetric unit of the title compound with displacement ellipsoids drawn at the 30% probability level. | |
Fig. 2. A packing diagram of the title compound viewed along c direction. The hydrogen bonds are highlighted by dashed lines. |
C20H14N4 | F(000) = 1296 |
Mr = 310.35 | Dx = 1.331 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1697 reflections |
a = 16.196 (3) Å | θ = 2.4–22.0° |
b = 20.174 (3) Å | µ = 0.08 mm−1 |
c = 9.9010 (16) Å | T = 296 K |
β = 106.733 (3)° | Block, yellow |
V = 3098.1 (8) Å3 | 0.26 × 0.22 × 0.17 mm |
Z = 8 |
Bruker APEXII CCD diffractometer | 5451 independent reflections |
Radiation source: fine-focus sealed tube | 3197 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.062 |
ϕ and ω scans | θmax = 25.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −16→19 |
Tmin = 0.979, Tmax = 0.986 | k = −23→23 |
15697 measured reflections | l = −11→8 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.053 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.126 | w = 1/[σ2(Fo2) + (0.042P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max < 0.001 |
5451 reflections | Δρmax = 0.21 e Å−3 |
450 parameters | Δρmin = −0.21 e Å−3 |
5 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0018 (3) |
C20H14N4 | V = 3098.1 (8) Å3 |
Mr = 310.35 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 16.196 (3) Å | µ = 0.08 mm−1 |
b = 20.174 (3) Å | T = 296 K |
c = 9.9010 (16) Å | 0.26 × 0.22 × 0.17 mm |
β = 106.733 (3)° |
Bruker APEXII CCD diffractometer | 5451 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 3197 reflections with I > 2σ(I) |
Tmin = 0.979, Tmax = 0.986 | Rint = 0.062 |
15697 measured reflections |
R[F2 > 2σ(F2)] = 0.053 | 5 restraints |
wR(F2) = 0.126 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.21 e Å−3 |
5451 reflections | Δρmin = −0.21 e Å−3 |
450 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.29247 (12) | −0.04939 (9) | 0.8970 (2) | 0.0422 (5) | |
N2 | 0.27746 (13) | −0.04637 (9) | 0.6655 (2) | 0.0449 (5) | |
N3 | 0.07524 (11) | 0.26679 (8) | 0.8390 (2) | 0.0400 (5) | |
N4 | 0.06709 (12) | 0.27094 (9) | 0.6109 (2) | 0.0409 (5) | |
N5 | 0.21368 (12) | −0.03614 (9) | 0.3559 (2) | 0.0457 (5) | |
N6 | 0.25379 (13) | −0.06306 (9) | 0.1650 (2) | 0.0447 (5) | |
N7 | 0.38516 (11) | 0.29079 (8) | 0.3466 (2) | 0.0429 (5) | |
N8 | 0.39950 (13) | 0.27194 (9) | 0.1317 (2) | 0.0430 (5) | |
C1 | 0.32991 (14) | −0.10557 (10) | 0.8589 (3) | 0.0419 (6) | |
C2 | 0.37149 (15) | −0.15816 (11) | 0.9408 (3) | 0.0523 (7) | |
H2A | 0.3776 | −0.1599 | 1.0371 | 0.063* | |
C3 | 0.40316 (16) | −0.20745 (12) | 0.8745 (3) | 0.0572 (7) | |
H3 | 0.4315 | −0.2432 | 0.9273 | 0.069* | |
C4 | 0.39416 (16) | −0.20559 (12) | 0.7306 (3) | 0.0585 (7) | |
H4A | 0.4166 | −0.2401 | 0.6897 | 0.070* | |
C5 | 0.35302 (15) | −0.15420 (12) | 0.6475 (3) | 0.0551 (7) | |
H5 | 0.3469 | −0.1529 | 0.5512 | 0.066* | |
C6 | 0.32114 (14) | −0.10441 (10) | 0.7147 (3) | 0.0416 (6) | |
C7 | 0.26227 (14) | −0.01539 (10) | 0.7780 (3) | 0.0404 (6) | |
C8 | 0.22036 (14) | 0.04919 (10) | 0.7669 (2) | 0.0380 (6) | |
C9 | 0.18877 (15) | 0.07285 (10) | 0.8733 (3) | 0.0463 (6) | |
H9 | 0.1941 | 0.0470 | 0.9531 | 0.056* | |
C10 | 0.14979 (15) | 0.13358 (11) | 0.8634 (3) | 0.0483 (6) | |
H10 | 0.1300 | 0.1486 | 0.9372 | 0.058* | |
C11 | 0.13940 (13) | 0.17303 (10) | 0.7452 (2) | 0.0366 (5) | |
C12 | 0.17413 (15) | 0.15063 (11) | 0.6412 (3) | 0.0504 (7) | |
H12 | 0.1704 | 0.1770 | 0.5627 | 0.061* | |
C13 | 0.21410 (16) | 0.08991 (12) | 0.6522 (3) | 0.0549 (7) | |
H13 | 0.2373 | 0.0760 | 0.5813 | 0.066* | |
C14 | 0.09418 (14) | 0.23666 (10) | 0.7334 (2) | 0.0379 (6) | |
C15 | 0.03436 (14) | 0.32525 (11) | 0.7812 (3) | 0.0425 (6) | |
C16 | 0.00158 (16) | 0.37657 (12) | 0.8445 (3) | 0.0597 (7) | |
H16 | 0.0040 | 0.3748 | 0.9395 | 0.072* | |
C17 | −0.03427 (19) | 0.42969 (13) | 0.7627 (4) | 0.0739 (9) | |
H17 | −0.0555 | 0.4650 | 0.8032 | 0.089* | |
C18 | −0.03965 (18) | 0.43187 (13) | 0.6192 (4) | 0.0740 (9) | |
H18 | −0.0648 | 0.4686 | 0.5665 | 0.089* | |
C19 | −0.00906 (15) | 0.38159 (12) | 0.5539 (3) | 0.0579 (7) | |
H19 | −0.0133 | 0.3830 | 0.4582 | 0.069* | |
C20 | 0.02871 (14) | 0.32833 (11) | 0.6384 (3) | 0.0428 (6) | |
C21 | 0.19204 (14) | −0.10180 (11) | 0.3204 (3) | 0.0441 (6) | |
C22 | 0.15135 (16) | −0.14810 (12) | 0.3834 (3) | 0.0582 (7) | |
H22 | 0.1335 | −0.1371 | 0.4619 | 0.070* | |
C23 | 0.13831 (17) | −0.21025 (13) | 0.3267 (3) | 0.0627 (8) | |
H23 | 0.1110 | −0.2419 | 0.3670 | 0.075* | |
C24 | 0.16497 (17) | −0.22720 (12) | 0.2103 (3) | 0.0637 (8) | |
H24 | 0.1561 | −0.2703 | 0.1756 | 0.076* | |
C25 | 0.20405 (16) | −0.18225 (11) | 0.1449 (3) | 0.0587 (7) | |
H25 | 0.2210 | −0.1936 | 0.0658 | 0.070* | |
C26 | 0.21713 (14) | −0.11937 (11) | 0.2019 (3) | 0.0440 (6) | |
C27 | 0.24929 (14) | −0.01533 (10) | 0.2595 (2) | 0.0396 (6) | |
C28 | 0.28177 (14) | 0.05166 (10) | 0.2531 (2) | 0.0371 (6) | |
C29 | 0.34685 (14) | 0.06484 (10) | 0.1920 (3) | 0.0447 (6) | |
H29 | 0.3704 | 0.0302 | 0.1531 | 0.054* | |
C30 | 0.37728 (15) | 0.12830 (11) | 0.1877 (3) | 0.0458 (6) | |
H30 | 0.4212 | 0.1362 | 0.1466 | 0.055* | |
C31 | 0.34253 (14) | 0.18036 (10) | 0.2446 (2) | 0.0372 (5) | |
C32 | 0.27666 (14) | 0.16773 (10) | 0.3045 (2) | 0.0428 (6) | |
H32 | 0.2529 | 0.2024 | 0.3427 | 0.051* | |
C33 | 0.24615 (14) | 0.10442 (10) | 0.3080 (2) | 0.0427 (6) | |
H33 | 0.2013 | 0.0967 | 0.3473 | 0.051* | |
C34 | 0.37521 (14) | 0.24779 (10) | 0.2431 (3) | 0.0391 (6) | |
C35 | 0.41685 (14) | 0.34739 (10) | 0.2989 (3) | 0.0400 (6) | |
C36 | 0.43613 (14) | 0.40958 (11) | 0.3605 (3) | 0.0493 (6) | |
H36 | 0.4292 | 0.4183 | 0.4488 | 0.059* | |
C37 | 0.46551 (16) | 0.45757 (11) | 0.2884 (3) | 0.0559 (7) | |
H37 | 0.4784 | 0.4995 | 0.3281 | 0.067* | |
C38 | 0.47638 (18) | 0.44489 (13) | 0.1577 (3) | 0.0677 (8) | |
H38 | 0.4973 | 0.4783 | 0.1118 | 0.081* | |
C39 | 0.45718 (16) | 0.38443 (12) | 0.0935 (3) | 0.0606 (7) | |
H39 | 0.4645 | 0.3762 | 0.0052 | 0.073* | |
C40 | 0.42666 (14) | 0.33628 (10) | 0.1652 (3) | 0.0412 (6) | |
H2 | 0.2599 (15) | −0.0344 (12) | 0.5728 (19) | 0.069 (9)* | |
H4 | 0.0751 (15) | 0.2586 (10) | 0.5247 (19) | 0.059 (8)* | |
H6 | 0.2687 (15) | −0.0543 (12) | 0.084 (2) | 0.070 (8)* | |
H8 | 0.3954 (16) | 0.2505 (11) | 0.051 (2) | 0.069 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0531 (12) | 0.0402 (11) | 0.0389 (13) | 0.0030 (9) | 0.0219 (11) | 0.0027 (9) |
N2 | 0.0578 (13) | 0.0460 (12) | 0.0346 (14) | 0.0063 (10) | 0.0192 (12) | −0.0028 (11) |
N3 | 0.0488 (11) | 0.0394 (11) | 0.0365 (12) | 0.0025 (9) | 0.0195 (10) | −0.0018 (9) |
N4 | 0.0485 (12) | 0.0412 (11) | 0.0381 (14) | 0.0025 (9) | 0.0204 (11) | −0.0002 (10) |
N5 | 0.0574 (12) | 0.0460 (12) | 0.0421 (13) | −0.0083 (10) | 0.0277 (11) | −0.0020 (10) |
N6 | 0.0608 (13) | 0.0405 (11) | 0.0409 (14) | −0.0066 (10) | 0.0277 (12) | −0.0020 (10) |
N7 | 0.0562 (12) | 0.0356 (10) | 0.0433 (13) | −0.0040 (9) | 0.0249 (11) | −0.0006 (9) |
N8 | 0.0548 (12) | 0.0417 (12) | 0.0379 (14) | −0.0039 (9) | 0.0217 (11) | −0.0011 (10) |
C1 | 0.0443 (13) | 0.0400 (13) | 0.0443 (17) | 0.0018 (11) | 0.0175 (13) | −0.0019 (12) |
C2 | 0.0614 (15) | 0.0470 (15) | 0.0520 (18) | 0.0081 (13) | 0.0218 (15) | 0.0081 (13) |
C3 | 0.0599 (16) | 0.0444 (15) | 0.069 (2) | 0.0109 (13) | 0.0207 (17) | 0.0033 (14) |
C4 | 0.0586 (16) | 0.0531 (16) | 0.066 (2) | 0.0107 (13) | 0.0209 (17) | −0.0101 (15) |
C5 | 0.0618 (16) | 0.0547 (16) | 0.0511 (19) | 0.0094 (13) | 0.0197 (15) | −0.0104 (14) |
C6 | 0.0454 (13) | 0.0388 (13) | 0.0437 (16) | 0.0015 (11) | 0.0178 (13) | −0.0022 (12) |
C7 | 0.0473 (14) | 0.0398 (13) | 0.0382 (16) | −0.0010 (11) | 0.0190 (13) | −0.0013 (12) |
C8 | 0.0439 (13) | 0.0386 (13) | 0.0350 (15) | 0.0021 (10) | 0.0167 (12) | 0.0023 (11) |
C9 | 0.0632 (15) | 0.0428 (14) | 0.0396 (16) | 0.0090 (12) | 0.0257 (14) | 0.0068 (11) |
C10 | 0.0663 (16) | 0.0468 (14) | 0.0414 (16) | 0.0093 (12) | 0.0304 (14) | 0.0006 (12) |
C11 | 0.0411 (12) | 0.0356 (12) | 0.0361 (15) | 0.0007 (10) | 0.0161 (12) | 0.0001 (11) |
C12 | 0.0674 (16) | 0.0507 (15) | 0.0415 (17) | 0.0156 (13) | 0.0288 (15) | 0.0092 (12) |
C13 | 0.0757 (18) | 0.0563 (16) | 0.0413 (17) | 0.0196 (14) | 0.0305 (15) | 0.0058 (13) |
C14 | 0.0443 (13) | 0.0396 (13) | 0.0340 (15) | −0.0063 (11) | 0.0177 (12) | 0.0005 (11) |
C15 | 0.0432 (13) | 0.0404 (13) | 0.0476 (17) | 0.0009 (11) | 0.0191 (13) | −0.0013 (12) |
C16 | 0.0655 (17) | 0.0596 (17) | 0.062 (2) | 0.0130 (14) | 0.0310 (16) | −0.0032 (15) |
C17 | 0.084 (2) | 0.0598 (18) | 0.083 (3) | 0.0289 (16) | 0.033 (2) | −0.0013 (18) |
C18 | 0.081 (2) | 0.0575 (18) | 0.084 (3) | 0.0277 (15) | 0.026 (2) | 0.0120 (17) |
C19 | 0.0630 (16) | 0.0552 (16) | 0.059 (2) | 0.0122 (13) | 0.0232 (15) | 0.0148 (14) |
C20 | 0.0419 (13) | 0.0395 (13) | 0.0504 (18) | 0.0022 (11) | 0.0185 (13) | 0.0022 (12) |
C21 | 0.0498 (14) | 0.0458 (14) | 0.0390 (16) | −0.0079 (11) | 0.0162 (13) | 0.0009 (12) |
C22 | 0.0701 (17) | 0.0579 (16) | 0.0534 (19) | −0.0156 (14) | 0.0287 (15) | 0.0026 (14) |
C23 | 0.0642 (17) | 0.0567 (17) | 0.069 (2) | −0.0192 (14) | 0.0215 (17) | 0.0094 (15) |
C24 | 0.0701 (18) | 0.0433 (15) | 0.081 (2) | −0.0116 (13) | 0.0264 (18) | −0.0039 (15) |
C25 | 0.0723 (17) | 0.0469 (15) | 0.064 (2) | −0.0089 (13) | 0.0310 (16) | −0.0103 (14) |
C26 | 0.0479 (14) | 0.0420 (14) | 0.0440 (17) | −0.0039 (11) | 0.0164 (13) | 0.0019 (12) |
C27 | 0.0466 (14) | 0.0399 (13) | 0.0353 (15) | −0.0014 (11) | 0.0166 (12) | −0.0011 (11) |
C28 | 0.0436 (13) | 0.0394 (13) | 0.0331 (14) | 0.0002 (10) | 0.0189 (12) | 0.0015 (11) |
C29 | 0.0536 (14) | 0.0385 (13) | 0.0516 (17) | −0.0020 (11) | 0.0304 (14) | −0.0060 (12) |
C30 | 0.0518 (14) | 0.0473 (14) | 0.0487 (17) | −0.0041 (11) | 0.0309 (13) | −0.0061 (12) |
C31 | 0.0420 (13) | 0.0383 (13) | 0.0346 (15) | 0.0028 (10) | 0.0163 (12) | 0.0023 (11) |
C32 | 0.0497 (14) | 0.0408 (13) | 0.0448 (16) | 0.0074 (11) | 0.0245 (13) | 0.0008 (11) |
C33 | 0.0453 (13) | 0.0430 (14) | 0.0465 (16) | 0.0001 (11) | 0.0240 (13) | 0.0009 (12) |
C34 | 0.0441 (13) | 0.0407 (13) | 0.0363 (15) | 0.0014 (11) | 0.0174 (12) | 0.0005 (12) |
C35 | 0.0455 (13) | 0.0384 (13) | 0.0398 (16) | 0.0005 (11) | 0.0180 (12) | 0.0021 (11) |
C36 | 0.0610 (16) | 0.0428 (14) | 0.0475 (17) | −0.0050 (12) | 0.0210 (14) | −0.0061 (12) |
C37 | 0.0678 (17) | 0.0432 (14) | 0.059 (2) | −0.0135 (13) | 0.0220 (16) | −0.0018 (14) |
C38 | 0.094 (2) | 0.0559 (17) | 0.059 (2) | −0.0259 (15) | 0.0307 (19) | 0.0058 (15) |
C39 | 0.0809 (19) | 0.0634 (17) | 0.0452 (18) | −0.0196 (15) | 0.0305 (16) | −0.0002 (14) |
C40 | 0.0458 (13) | 0.0400 (13) | 0.0415 (16) | −0.0051 (11) | 0.0183 (13) | 0.0008 (11) |
N1—C7 | 1.329 (3) | C15—C16 | 1.392 (3) |
N1—C1 | 1.388 (3) | C16—C17 | 1.368 (3) |
N2—H2 | 0.912 (17) | C16—H16 | 0.9300 |
N3—C14 | 1.319 (3) | C17—H17 | 0.9300 |
N3—C15 | 1.392 (3) | C18—C17 | 1.400 (4) |
N4—C14 | 1.355 (3) | C18—H18 | 0.9300 |
N4—C20 | 1.378 (3) | C19—C18 | 1.370 (3) |
N4—H4 | 0.933 (16) | C19—H19 | 0.9300 |
N5—C27 | 1.318 (3) | C20—C19 | 1.391 (3) |
N5—C21 | 1.389 (3) | C20—C15 | 1.392 (3) |
N6—C27 | 1.359 (3) | C21—C22 | 1.391 (3) |
N6—C26 | 1.379 (3) | C21—C26 | 1.393 (3) |
N6—H6 | 0.916 (16) | C22—C23 | 1.365 (3) |
N7—C34 | 1.316 (3) | C22—H22 | 0.9300 |
N7—C35 | 1.389 (3) | C23—H23 | 0.9300 |
N8—C34 | 1.363 (3) | C24—C23 | 1.385 (4) |
N8—C40 | 1.380 (3) | C24—H24 | 0.9300 |
N8—H8 | 0.898 (16) | C25—C24 | 1.370 (3) |
C1—C2 | 1.386 (3) | C25—H25 | 0.9300 |
C2—C3 | 1.370 (3) | C26—C25 | 1.380 (3) |
C2—H2A | 0.9300 | C28—C29 | 1.384 (3) |
C3—C4 | 1.391 (4) | C28—C33 | 1.393 (3) |
C3—H3 | 0.9300 | C28—C27 | 1.458 (3) |
C4—H4A | 0.9300 | C29—H29 | 0.9300 |
C5—C4 | 1.371 (3) | C30—C29 | 1.377 (3) |
C5—H5 | 0.9300 | C30—H30 | 0.9300 |
C6—N2 | 1.382 (3) | C31—C30 | 1.385 (3) |
C6—C5 | 1.384 (3) | C31—C32 | 1.386 (3) |
C6—C1 | 1.393 (3) | C32—H32 | 0.9300 |
C7—N2 | 1.360 (3) | C33—C32 | 1.373 (3) |
C7—C8 | 1.459 (3) | C33—H33 | 0.9300 |
C8—C13 | 1.381 (3) | C34—C31 | 1.461 (3) |
C9—C10 | 1.369 (3) | C35—C36 | 1.391 (3) |
C9—C8 | 1.381 (3) | C35—C40 | 1.396 (3) |
C9—H9 | 0.9300 | C36—C37 | 1.367 (3) |
C10—H10 | 0.9300 | C36—H36 | 0.9300 |
C11—C12 | 1.384 (3) | C37—C38 | 1.379 (4) |
C11—C10 | 1.385 (3) | C37—H37 | 0.9300 |
C11—C14 | 1.466 (3) | C38—H38 | 0.9300 |
C12—C13 | 1.375 (3) | C39—C38 | 1.369 (3) |
C12—H12 | 0.9300 | C39—H39 | 0.9300 |
C13—H13 | 0.9300 | C40—C39 | 1.376 (3) |
C7—N1—C1 | 104.99 (19) | C29—C30—H30 | 120.0 |
C7—N2—C6 | 107.2 (2) | C31—C30—H30 | 120.0 |
C7—N2—H2 | 128.7 (16) | N6—C26—C25 | 132.6 (2) |
C6—N2—H2 | 123.9 (16) | N6—C26—C21 | 105.4 (2) |
C14—N3—C15 | 104.86 (19) | C25—C26—C21 | 122.0 (2) |
C14—N4—C20 | 107.5 (2) | N5—C27—N6 | 113.21 (19) |
C14—N4—H4 | 126.0 (14) | N5—C27—C28 | 124.4 (2) |
C20—N4—H4 | 126.5 (14) | N6—C27—C28 | 122.4 (2) |
C27—N6—C26 | 106.80 (19) | C20—C15—N3 | 109.85 (19) |
C27—N6—H6 | 122.9 (15) | C20—C15—C16 | 120.2 (2) |
C26—N6—H6 | 129.2 (16) | N3—C15—C16 | 130.0 (2) |
C34—N7—C35 | 104.58 (19) | C12—C13—C8 | 121.1 (2) |
C34—N8—C40 | 106.7 (2) | C12—C13—H13 | 119.4 |
C34—N8—H8 | 126.0 (16) | C8—C13—H13 | 119.4 |
C40—N8—H8 | 127.2 (16) | C3—C2—C1 | 117.5 (2) |
N1—C7—N2 | 112.4 (2) | C3—C2—H2A | 121.3 |
N1—C7—C8 | 124.9 (2) | C1—C2—H2A | 121.3 |
N2—C7—C8 | 122.6 (2) | C33—C32—C31 | 120.6 (2) |
N7—C34—N8 | 113.25 (19) | C33—C32—H32 | 119.7 |
N7—C34—C31 | 124.7 (2) | C31—C32—H32 | 119.7 |
N8—C34—C31 | 122.0 (2) | C30—C29—C28 | 121.1 (2) |
C12—C11—C10 | 117.7 (2) | C30—C29—H29 | 119.5 |
C12—C11—C14 | 121.8 (2) | C28—C29—H29 | 119.5 |
C10—C11—C14 | 120.5 (2) | C38—C39—C40 | 117.2 (2) |
C27—N5—C21 | 104.58 (18) | C38—C39—H39 | 121.4 |
C10—C9—C8 | 121.3 (2) | C40—C39—H39 | 121.4 |
C10—C9—H9 | 119.4 | C4—C5—C6 | 116.4 (2) |
C8—C9—H9 | 119.4 | C4—C5—H5 | 121.8 |
N4—C20—C19 | 132.5 (2) | C6—C5—H5 | 121.8 |
N4—C20—C15 | 105.2 (2) | C37—C36—C35 | 118.5 (2) |
C19—C20—C15 | 122.3 (2) | C37—C36—H36 | 120.7 |
N2—C6—C5 | 132.0 (2) | C35—C36—H36 | 120.7 |
N2—C6—C1 | 105.44 (19) | C36—C37—C38 | 121.1 (2) |
C5—C6—C1 | 122.6 (2) | C36—C37—H37 | 119.5 |
C9—C10—C11 | 121.1 (2) | C38—C37—H37 | 119.5 |
C9—C10—H10 | 119.5 | C2—C3—C4 | 121.9 (2) |
C11—C10—H10 | 119.5 | C2—C3—H3 | 119.1 |
C29—C28—C33 | 118.47 (19) | C4—C3—H3 | 119.1 |
C29—C28—C27 | 121.76 (19) | C18—C19—C20 | 116.4 (3) |
C33—C28—C27 | 119.76 (19) | C18—C19—H19 | 121.8 |
C2—C1—N1 | 130.0 (2) | C20—C19—H19 | 121.8 |
C2—C1—C6 | 120.1 (2) | C5—C4—C3 | 121.6 (2) |
N1—C1—C6 | 109.9 (2) | C5—C4—H4A | 119.2 |
C13—C8—C9 | 117.7 (2) | C3—C4—H4A | 119.2 |
C13—C8—C7 | 121.0 (2) | C17—C16—C15 | 117.9 (3) |
C9—C8—C7 | 121.2 (2) | C17—C16—H16 | 121.0 |
N7—C35—C36 | 130.6 (2) | C15—C16—H16 | 121.0 |
N7—C35—C40 | 110.15 (19) | C23—C22—C21 | 118.0 (2) |
C36—C35—C40 | 119.2 (2) | C23—C22—H22 | 121.0 |
N3—C14—N4 | 112.65 (19) | C21—C22—H22 | 121.0 |
N3—C14—C11 | 124.4 (2) | C24—C25—C26 | 116.9 (2) |
N4—C14—C11 | 122.9 (2) | C24—C25—H25 | 121.5 |
C13—C12—C11 | 121.0 (2) | C26—C25—H25 | 121.5 |
C13—C12—H12 | 119.5 | C25—C24—C23 | 121.8 (2) |
C11—C12—H12 | 119.5 | C25—C24—H24 | 119.1 |
C32—C33—C28 | 120.6 (2) | C23—C24—H24 | 119.1 |
C32—C33—H33 | 119.7 | C19—C18—C17 | 122.1 (3) |
C28—C33—H33 | 119.7 | C19—C18—H18 | 119.0 |
C30—C31—C32 | 119.19 (19) | C17—C18—H18 | 119.0 |
C30—C31—C34 | 120.74 (19) | C22—C23—C24 | 121.4 (2) |
C32—C31—C34 | 120.06 (19) | C22—C23—H23 | 119.3 |
N5—C21—C22 | 130.1 (2) | C24—C23—H23 | 119.3 |
N5—C21—C26 | 110.01 (19) | C39—C38—C37 | 121.8 (2) |
C22—C21—C26 | 119.9 (2) | C39—C38—H38 | 119.1 |
C39—C40—N8 | 132.6 (2) | C37—C38—H38 | 119.1 |
C39—C40—C35 | 122.1 (2) | C16—C17—C18 | 121.2 (3) |
N8—C40—C35 | 105.26 (19) | C16—C17—H17 | 119.4 |
C29—C30—C31 | 120.1 (2) | C18—C17—H17 | 119.4 |
C1—N1—C7—N2 | 0.4 (3) | C27—N6—C26—C21 | −0.1 (3) |
C1—N1—C7—C8 | −177.3 (2) | N5—C21—C26—N6 | −0.5 (3) |
C35—N7—C34—N8 | 1.0 (3) | C22—C21—C26—N6 | 179.2 (2) |
C35—N7—C34—C31 | −179.7 (2) | N5—C21—C26—C25 | 179.3 (2) |
C40—N8—C34—N7 | −0.7 (3) | C22—C21—C26—C25 | −0.9 (4) |
C40—N8—C34—C31 | 179.96 (19) | C21—N5—C27—N6 | −1.1 (3) |
C14—N4—C20—C19 | 179.1 (2) | C21—N5—C27—C28 | 179.4 (2) |
C14—N4—C20—C15 | −0.4 (2) | C26—N6—C27—N5 | 0.8 (3) |
C8—C9—C10—C11 | 1.1 (4) | C26—N6—C27—C28 | −179.7 (2) |
C12—C11—C10—C9 | −3.6 (4) | C29—C28—C27—N5 | 153.5 (2) |
C14—C11—C10—C9 | 177.3 (2) | C33—C28—C27—N5 | −27.4 (3) |
C7—N1—C1—C2 | 179.8 (2) | C29—C28—C27—N6 | −26.0 (3) |
C7—N1—C1—C6 | −0.2 (2) | C33—C28—C27—N6 | 153.2 (2) |
N2—C6—C1—C2 | 179.97 (19) | N4—C20—C15—N3 | −0.2 (2) |
C5—C6—C1—C2 | −0.4 (4) | C19—C20—C15—N3 | −179.8 (2) |
N2—C6—C1—N1 | −0.1 (2) | N4—C20—C15—C16 | 179.6 (2) |
C5—C6—C1—N1 | 179.6 (2) | C19—C20—C15—C16 | 0.0 (4) |
C10—C9—C8—C13 | 2.3 (4) | C14—N3—C15—C20 | 0.8 (2) |
C10—C9—C8—C7 | 179.7 (2) | C14—N3—C15—C16 | −179.0 (2) |
N1—C7—C8—C13 | 160.4 (2) | C11—C12—C13—C8 | 0.4 (4) |
N2—C7—C8—C13 | −17.1 (3) | C9—C8—C13—C12 | −3.0 (4) |
N1—C7—C8—C9 | −16.9 (3) | C7—C8—C13—C12 | 179.6 (2) |
N2—C7—C8—C9 | 165.6 (2) | N1—C1—C2—C3 | −179.6 (2) |
C34—N7—C35—C36 | 177.0 (2) | C6—C1—C2—C3 | 0.4 (3) |
C34—N7—C35—C40 | −0.9 (3) | C28—C33—C32—C31 | 1.0 (3) |
N1—C7—N2—C6 | −0.4 (3) | C30—C31—C32—C33 | 0.1 (3) |
C8—C7—N2—C6 | 177.33 (19) | C34—C31—C32—C33 | −179.2 (2) |
C5—C6—N2—C7 | −179.4 (2) | C31—C30—C29—C28 | −0.3 (4) |
C1—C6—N2—C7 | 0.3 (2) | C33—C28—C29—C30 | 1.3 (3) |
C15—N3—C14—N4 | −1.1 (2) | C27—C28—C29—C30 | −179.5 (2) |
C15—N3—C14—C11 | 179.01 (19) | N8—C40—C39—C38 | 178.1 (2) |
C20—N4—C14—N3 | 1.0 (3) | C35—C40—C39—C38 | −1.2 (4) |
C20—N4—C14—C11 | −179.10 (19) | N2—C6—C5—C4 | 179.7 (2) |
C12—C11—C14—N3 | −165.6 (2) | C1—C6—C5—C4 | 0.1 (4) |
C10—C11—C14—N3 | 13.4 (3) | N7—C35—C36—C37 | −178.8 (2) |
C12—C11—C14—N4 | 14.5 (3) | C40—C35—C36—C37 | −1.0 (3) |
C10—C11—C14—N4 | −166.5 (2) | C35—C36—C37—C38 | −0.3 (4) |
C10—C11—C12—C13 | 2.9 (4) | C1—C2—C3—C4 | −0.2 (4) |
C14—C11—C12—C13 | −178.1 (2) | N4—C20—C19—C18 | −178.6 (2) |
C29—C28—C33—C32 | −1.7 (3) | C15—C20—C19—C18 | 0.9 (4) |
C27—C28—C33—C32 | 179.2 (2) | C6—C5—C4—C3 | 0.1 (4) |
N7—C34—C31—C30 | −141.3 (2) | C2—C3—C4—C5 | 0.0 (4) |
N8—C34—C31—C30 | 38.0 (3) | C20—C15—C16—C17 | −1.2 (4) |
N7—C34—C31—C32 | 38.0 (3) | N3—C15—C16—C17 | 178.6 (2) |
N8—C34—C31—C32 | −142.7 (2) | N5—C21—C22—C23 | −179.6 (2) |
C27—N5—C21—C22 | −178.7 (3) | C26—C21—C22—C23 | 0.8 (4) |
C27—N5—C21—C26 | 1.0 (3) | N6—C26—C25—C24 | 179.8 (2) |
C34—N8—C40—C39 | −179.4 (3) | C21—C26—C25—C24 | 0.0 (4) |
C34—N8—C40—C35 | 0.0 (3) | C26—C25—C24—C23 | 1.1 (4) |
N7—C35—C40—C39 | −180.0 (2) | C20—C19—C18—C17 | −0.7 (4) |
C36—C35—C40—C39 | 1.8 (4) | C21—C22—C23—C24 | 0.3 (4) |
N7—C35—C40—N8 | 0.6 (3) | C25—C24—C23—C22 | −1.3 (5) |
C36—C35—C40—N8 | −177.6 (2) | C40—C39—C38—C37 | −0.2 (4) |
C32—C31—C30—C29 | −0.5 (3) | C36—C37—C38—C39 | 1.0 (5) |
C34—C31—C30—C29 | 178.9 (2) | C15—C16—C17—C18 | 1.4 (4) |
C27—N6—C26—C25 | −180.0 (3) | C19—C18—C17—C16 | −0.4 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N5 | 0.91 (2) | 2.06 (2) | 2.947 (3) | 164 (2) |
N4—H4···N3i | 0.93 (2) | 1.91 (2) | 2.837 (3) | 172 (2) |
N6—H6···N1ii | 0.92 (2) | 2.00 (2) | 2.910 (3) | 171 (2) |
N8—H8···N7i | 0.90 (2) | 2.15 (2) | 3.041 (3) | 174 (2) |
C12—H12···N3i | 0.93 | 2.57 | 3.396 (3) | 148 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, y, z−1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N5 | 0.912 (17) | 2.061 (18) | 2.947 (3) | 164 (2) |
N4—H4···N3i | 0.933 (16) | 1.909 (17) | 2.837 (3) | 172 (2) |
N6—H6···N1ii | 0.916 (16) | 2.002 (17) | 2.910 (3) | 171 (2) |
N8—H8···N7i | 0.898 (16) | 2.146 (17) | 3.041 (3) | 174 (2) |
C12—H12···N3i | 0.93 | 2.57 | 3.396 (3) | 148 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, y, z−1. |
Acknowledgements
Financial support by the key discipline project of Hunan Province is gratefully acknowledged.
References
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Benzimidazole and their derivatives have been widely researched for their potential applications in medicinal chemistry, biochemistry and material chemistry. 1,4-bis(benzimidazol-2-yl)benzene has been synthesized with many methods in different groups. Zhuang have synthesized 1,4-bis(benzimidazol-2-yl)benzene with microwave method (Zhuang et al., 2011). Zhao have synthesized it using phosphoric acid as a catalyst (Zhao et al., 2012) instead of polyphosphoric acid which are commonly used in synthesis of benzimidazole (Alcalde et al., 1992). Its crystal structure has been determined by Bei et al. (2000) and Dudd et al. (2003). Recently, its crystal structures with solvent molecules DMF or methanol have also been reported (Wu & Hu, 2009; Su et al., 2011). Here, we report a new crystal structure of 1,4-bis(benzimidazol-2-yl)benzene.
In the crystal, the asymmetric unit contains two independent 1,4-bis(benzimidazol-2-yl)benzene molecules. The bond lengths are similar with those in literature (Bei et al., 2000; Dudd et al., 2003; Wu & Hu, 2009; Su et al., 2011). The angles between benzimidazole rings (r.m.s. deviations of 0.0028 Å for molecule contain N1 and 0.0140 Å for molecule contain N3) and benzene rings (r.m.s. deviations of 0.0140 Å for C8–C13) are 16.8 and 14.2°. In the other molecule, the angles between benzimidazole rings (r.m.s. deviations of 0.0065 Å for molecule contain N5 and 0.0127 Å for molecule contain N7) and benzene rings (r.m.s. deviations of 0.0045 Å for C28–C33) are 26.1 and 37.3°. These angles are different with those reported by other researchers (31.0°, Bei et al., 2000; Dudd et al., 2003; 9.1°, Wu & Hu, 2009; 24.0° and 11. 6°, Su et al., 2011). There are five kinds of hydrogen bonds which result in one dimensional network as that shown in Fig. 2 and Table 1.