organic compounds
Deacetylcinobufalactam monohydrate
aGuangdong Province Key Laboratory of Pharmacodynamic Constituents of Traditional Chinese Medicine and New Drugs Research, Institute of Traditional Chinese Medicine and Natural Products, Jinan University, Guangzhou 510632, People's Republic of China
*Correspondence e-mail: trwjiang@jnu.edu.cn
The title compound, C24H33NO4·H2O, the reaction product of deacetylcinobufagin with ammonium acetate, consists of three cyclohexane rings (A, B and C), one five-membered ring (D), one six-membered lactone ring (E) and an epoxide ring (F). The stereochemistry of the ring junctures are A/B cis, B/C trans, C/D cis and D/F cis. Cyclohexane rings A, B and C have normal chair conformations. The five-membered ring D adopts an (with the C atom bearing the lactone ring as the flap) and the lactone ring E is planar. In the crystal, hydroxy and water O—H⋯O and amine N—H⋯O hydrogen bonds involving carbonyl, hydroxy and water O-atom acceptors link the molecules into a three-dimensional network.
CCDC reference: 1000729
Related literature
For a previous isolation of deacetylcinobufagin [cinobufagin β,5β,15β,16β)-16-acetoxy-3-hydroxy-14,15-epoxybufa-20,22-dienolide] see: Li et al. (2007). For the biosynthesis of deacetylcinobufagin, see: Zhan et al. (2003). For its pharmacological activity, see: Yu et al. (2008); Tian et al. (2013). For the stereochemistry of bufalin, see: Rohrer et al. (1982).
(3Experimental
Crystal data
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Data collection: CrysAlis PRO (Agilent, 2011); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
CCDC reference: 1000729
10.1107/S1600536814010046/zs2298sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814010046/zs2298Isup2.hkl
Deacetylcinobufagin (40.0 mg) was dissolved in DMF, then ammonium acetate (38.5 mg) was added under nitrogen protection. The mixture was stirred for three hours at 100 °C. After completion of the reaction, the mixture was poured into water and extracted with ethyl acetate. The ethyl acetate extract was washed with water to remove the solvent DMF and the excess ammonium acetate and condensed by rotary evaporation under reduced pressure. The residue was recrystallized in methanol at room temperature to afford colorless crystals (28.6 mg, yield 71.7%).
The C-bound H atoms were positioned geometrically and were included in the θ(min) and θ(max), which might be also due to the inadequate collection strategy, and adjustment of the orientation to tilt the crystal axis might be helpful for collecting a complete set of diffraction data. In addition, both hydrogen atoms on the water molecule are involved in hydrogen bonding. The O—H bond distances are significantly different from the ideal bond length so these two hydrogen atoms were refined freely. The highest residual electron density was 0.142 eÅ3 and has no particular structural significance.
in the riding-model approximation, with C—H = 0.96 Å (CH3) and Uiso(H) = 1.5Ueq(C); 0.97 Å (CH2) and Uiso(H) = 1.2Ueq(C); 0.98 Å (CH) and Uiso(H) = 1.2Ueq(C); 0.93 Å (aryl H) and Uiso(H)= 1.2Ueq(C); O—H = 0.82 Å and Uiso(H) = 1.5Ueq(O). The coverage for the collection is low. It may be due to an inadequate collection strategy. Recollection of diffraction data was not thought to be necessary since the can be unambiguously assigned with reference to the known configuration of the closely related compound bufalin (Rohrer et al., 1982) [(C3S,C5R, C8R,C9S,C10S,C13R,C14S,C15R, C16R,C17R) for the 10 chiral centres in the title compound using the arbitrarily named atoms employed]. The was refined to 0.0 (3) for 571 Friedel pairs. There are 32 reflections missing betweenData collection: CrysAlis PRO (Agilent, 2011); cell
CrysAlis PRO (Agilent, 2011); data reduction: CrysAlis PRO (Agilent, 2011); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound showing atom the numbering scheme and 30% probability displacement ellipsoids. The inter-species hydrogen bond is shown as a dashed line. | |
Fig. 2. The packing diagram showing the intermolecular O—H···O and N—H···O hydrogen bonds which are represented by dashed lines. Selected H-atoms highlighting the hydrogen bonding are shown. |
C24H33NO4·H2O | F(000) = 452 |
Mr = 417.53 | Dx = 1.263 Mg m−3 |
Monoclinic, P21 | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: P 2yb | Cell parameters from 2374 reflections |
a = 8.0097 (2) Å | θ = 3.9–62.8° |
b = 12.1155 (4) Å | µ = 0.71 mm−1 |
c = 11.3627 (3) Å | T = 290 K |
β = 95.077 (3)° | Plate, colorless |
V = 1098.33 (5) Å3 | 0.40 × 0.32 × 0.10 mm |
Z = 2 |
Oxford Diffraction Gemini-S Ultra sapphire CCD diffractometer | 2396 independent reflections |
Radiation source: fine-focus sealed tube | 2261 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ω scans | θmax = 62.8°, θmin = 3.9° |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | h = −9→8 |
Tmin = 0.806, Tmax = 1.0 | k = −8→13 |
3289 measured reflections | l = −11→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.081 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0421P)2 + 0.128P] where P = (Fo2 + 2Fc2)/3 |
2396 reflections | (Δ/σ)max < 0.001 |
280 parameters | Δρmax = 0.14 e Å−3 |
1 restraint | Δρmin = −0.13 e Å−3 |
C24H33NO4·H2O | V = 1098.33 (5) Å3 |
Mr = 417.53 | Z = 2 |
Monoclinic, P21 | Cu Kα radiation |
a = 8.0097 (2) Å | µ = 0.71 mm−1 |
b = 12.1155 (4) Å | T = 290 K |
c = 11.3627 (3) Å | 0.40 × 0.32 × 0.10 mm |
β = 95.077 (3)° |
Oxford Diffraction Gemini-S Ultra sapphire CCD diffractometer | 2396 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | 2261 reflections with I > 2σ(I) |
Tmin = 0.806, Tmax = 1.0 | Rint = 0.018 |
3289 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 1 restraint |
wR(F2) = 0.081 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.14 e Å−3 |
2396 reflections | Δρmin = −0.13 e Å−3 |
280 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | −0.2500 (2) | 0.63824 (18) | 0.52081 (16) | 0.0396 (5) | |
H1A | −0.3296 | 0.6720 | 0.5520 | 0.048* | |
O1 | 0.5226 (2) | 0.78557 (15) | −0.38275 (14) | 0.0450 (4) | |
H1B | 0.5728 | 0.8339 | −0.4159 | 0.067* | |
O2 | 0.2223 (2) | 0.53707 (14) | 0.21889 (13) | 0.0404 (4) | |
O3 | 0.3082 (2) | 0.66560 (16) | 0.44674 (14) | 0.0506 (5) | |
H3A | 0.3830 | 0.7042 | 0.4788 | 0.076* | |
O4 | −0.3079 (2) | 0.48508 (18) | 0.62396 (15) | 0.0529 (5) | |
C1 | 0.2137 (3) | 0.8092 (2) | −0.2603 (2) | 0.0375 (5) | |
H1C | 0.2009 | 0.7931 | −0.3442 | 0.045* | |
H1D | 0.1184 | 0.8536 | −0.2424 | 0.045* | |
C2 | 0.3714 (3) | 0.8770 (2) | −0.2341 (2) | 0.0430 (6) | |
H2A | 0.3799 | 0.9003 | −0.1521 | 0.052* | |
H2B | 0.3653 | 0.9426 | −0.2832 | 0.052* | |
C3 | 0.5255 (3) | 0.8109 (2) | −0.2575 (2) | 0.0410 (6) | |
H3B | 0.6263 | 0.8537 | −0.2327 | 0.049* | |
C4 | 0.5291 (3) | 0.7026 (2) | −0.1897 (2) | 0.0399 (6) | |
H4A | 0.6233 | 0.6591 | −0.2113 | 0.048* | |
H4B | 0.5473 | 0.7185 | −0.1058 | 0.048* | |
C5 | 0.3701 (3) | 0.6345 (2) | −0.21181 (18) | 0.0347 (5) | |
H5A | 0.3617 | 0.6135 | −0.2954 | 0.042* | |
C6 | 0.3824 (4) | 0.5274 (2) | −0.1411 (2) | 0.0465 (6) | |
H6A | 0.4896 | 0.4928 | −0.1504 | 0.056* | |
H6B | 0.2951 | 0.4773 | −0.1727 | 0.056* | |
C7 | 0.3649 (3) | 0.5455 (2) | −0.0095 (2) | 0.0449 (6) | |
H7A | 0.3630 | 0.4745 | 0.0299 | 0.054* | |
H7B | 0.4614 | 0.5862 | 0.0251 | 0.054* | |
C8 | 0.2052 (3) | 0.6091 (2) | 0.01045 (19) | 0.0343 (5) | |
H8A | 0.1104 | 0.5640 | −0.0218 | 0.041* | |
C9 | 0.1961 (3) | 0.71946 (19) | −0.05767 (19) | 0.0305 (5) | |
H9A | 0.2951 | 0.7624 | −0.0287 | 0.037* | |
C10 | 0.2087 (3) | 0.6997 (2) | −0.19199 (18) | 0.0328 (5) | |
C11 | 0.0424 (3) | 0.7867 (2) | −0.0302 (2) | 0.0420 (6) | |
H11A | 0.0466 | 0.8585 | −0.0675 | 0.050* | |
H11B | −0.0581 | 0.7494 | −0.0634 | 0.050* | |
C12 | 0.0323 (3) | 0.8024 (2) | 0.1027 (2) | 0.0405 (6) | |
H12A | −0.0680 | 0.8441 | 0.1151 | 0.049* | |
H12B | 0.1281 | 0.8452 | 0.1345 | 0.049* | |
C13 | 0.0287 (3) | 0.69225 (19) | 0.17083 (18) | 0.0324 (5) | |
C14 | 0.1819 (3) | 0.62930 (19) | 0.13928 (18) | 0.0320 (5) | |
C15 | 0.3140 (3) | 0.6388 (2) | 0.2355 (2) | 0.0392 (5) | |
H15A | 0.4314 | 0.6419 | 0.2177 | 0.047* | |
C16 | 0.2557 (3) | 0.7099 (2) | 0.33232 (19) | 0.0387 (6) | |
H16A | 0.3031 | 0.7840 | 0.3260 | 0.046* | |
C17 | 0.0623 (3) | 0.71678 (19) | 0.30680 (18) | 0.0336 (5) | |
H17A | 0.0313 | 0.7941 | 0.3181 | 0.040* | |
C18 | 0.0561 (3) | 0.6373 (3) | −0.2475 (2) | 0.0516 (7) | |
H18A | 0.0675 | 0.6258 | −0.3300 | 0.077* | |
H18B | −0.0433 | 0.6797 | −0.2385 | 0.077* | |
H18C | 0.0479 | 0.5673 | −0.2090 | 0.077* | |
C19 | −0.1342 (3) | 0.6303 (3) | 0.1395 (2) | 0.0452 (6) | |
H19A | −0.1484 | 0.6179 | 0.0558 | 0.068* | |
H19B | −0.2264 | 0.6732 | 0.1630 | 0.068* | |
H19C | −0.1307 | 0.5607 | 0.1800 | 0.068* | |
C20 | −0.0349 (3) | 0.6490 (2) | 0.38948 (18) | 0.0329 (5) | |
C21 | −0.1599 (3) | 0.6964 (2) | 0.44449 (19) | 0.0358 (5) | |
H21A | −0.1854 | 0.7703 | 0.4301 | 0.043* | |
C22 | −0.0037 (3) | 0.5362 (2) | 0.41596 (18) | 0.0349 (5) | |
H22A | 0.0805 | 0.4998 | 0.3800 | 0.042* | |
C23 | −0.0930 (3) | 0.4799 (2) | 0.49229 (19) | 0.0375 (5) | |
H23A | −0.0689 | 0.4058 | 0.5068 | 0.045* | |
C24 | −0.2220 (3) | 0.5307 (2) | 0.55044 (19) | 0.0379 (6) | |
O1W | 0.3771 (3) | 0.4443 (2) | 0.5263 (2) | 0.0555 (5) | |
H1WA | 0.480 (5) | 0.462 (3) | 0.567 (3) | 0.092 (13)* | |
H1WB | 0.355 (5) | 0.503 (4) | 0.496 (3) | 0.084 (14)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0374 (10) | 0.0467 (13) | 0.0365 (10) | 0.0049 (9) | 0.0131 (8) | 0.0015 (10) |
O1 | 0.0544 (10) | 0.0426 (11) | 0.0413 (9) | −0.0053 (8) | 0.0232 (8) | 0.0012 (8) |
O2 | 0.0541 (9) | 0.0351 (9) | 0.0335 (8) | 0.0123 (8) | 0.0119 (7) | 0.0039 (8) |
O3 | 0.0563 (10) | 0.0580 (12) | 0.0357 (9) | −0.0091 (9) | −0.0054 (7) | −0.0029 (9) |
O4 | 0.0498 (10) | 0.0619 (12) | 0.0490 (10) | −0.0076 (9) | 0.0154 (8) | 0.0124 (10) |
C1 | 0.0428 (12) | 0.0421 (14) | 0.0288 (12) | 0.0056 (11) | 0.0091 (9) | 0.0046 (11) |
C2 | 0.0593 (15) | 0.0318 (13) | 0.0403 (13) | −0.0022 (12) | 0.0179 (11) | −0.0008 (11) |
C3 | 0.0437 (13) | 0.0431 (14) | 0.0380 (13) | −0.0094 (11) | 0.0139 (10) | −0.0045 (12) |
C4 | 0.0373 (12) | 0.0458 (15) | 0.0379 (12) | 0.0043 (11) | 0.0105 (10) | 0.0002 (12) |
C5 | 0.0467 (12) | 0.0323 (13) | 0.0269 (10) | −0.0007 (11) | 0.0132 (9) | −0.0032 (10) |
C6 | 0.0635 (15) | 0.0373 (15) | 0.0422 (13) | 0.0084 (12) | 0.0240 (11) | 0.0007 (12) |
C7 | 0.0616 (15) | 0.0407 (14) | 0.0353 (12) | 0.0193 (13) | 0.0209 (11) | 0.0068 (12) |
C8 | 0.0421 (12) | 0.0317 (13) | 0.0304 (11) | 0.0025 (10) | 0.0100 (9) | 0.0012 (10) |
C9 | 0.0351 (11) | 0.0301 (12) | 0.0274 (11) | 0.0008 (9) | 0.0084 (8) | 0.0013 (10) |
C10 | 0.0342 (11) | 0.0378 (13) | 0.0273 (11) | −0.0027 (10) | 0.0067 (8) | 0.0021 (11) |
C11 | 0.0512 (14) | 0.0439 (16) | 0.0330 (13) | 0.0135 (12) | 0.0156 (10) | 0.0118 (11) |
C12 | 0.0526 (14) | 0.0336 (13) | 0.0377 (13) | 0.0144 (12) | 0.0181 (11) | 0.0054 (11) |
C13 | 0.0390 (12) | 0.0310 (12) | 0.0287 (11) | 0.0024 (10) | 0.0105 (9) | 0.0000 (10) |
C14 | 0.0406 (11) | 0.0262 (12) | 0.0305 (11) | 0.0025 (10) | 0.0116 (9) | 0.0036 (10) |
C15 | 0.0346 (11) | 0.0459 (15) | 0.0379 (12) | 0.0011 (11) | 0.0080 (9) | 0.0021 (12) |
C16 | 0.0462 (13) | 0.0370 (14) | 0.0335 (12) | −0.0076 (11) | 0.0065 (10) | −0.0030 (11) |
C17 | 0.0444 (12) | 0.0273 (12) | 0.0306 (12) | 0.0012 (10) | 0.0117 (9) | −0.0019 (10) |
C18 | 0.0508 (14) | 0.0668 (19) | 0.0370 (13) | −0.0149 (14) | 0.0033 (10) | −0.0092 (14) |
C19 | 0.0417 (12) | 0.0595 (17) | 0.0353 (12) | −0.0028 (13) | 0.0082 (10) | −0.0001 (13) |
C20 | 0.0382 (11) | 0.0357 (13) | 0.0258 (10) | 0.0009 (10) | 0.0076 (9) | −0.0025 (10) |
C21 | 0.0391 (12) | 0.0361 (13) | 0.0332 (11) | 0.0050 (11) | 0.0088 (9) | 0.0038 (11) |
C22 | 0.0401 (12) | 0.0357 (13) | 0.0295 (11) | 0.0019 (11) | 0.0063 (9) | −0.0037 (11) |
C23 | 0.0468 (12) | 0.0336 (13) | 0.0326 (11) | −0.0016 (11) | 0.0058 (10) | 0.0011 (11) |
C24 | 0.0361 (12) | 0.0457 (15) | 0.0316 (11) | −0.0050 (11) | 0.0010 (9) | 0.0034 (12) |
O1W | 0.0558 (13) | 0.0493 (13) | 0.0618 (13) | 0.0030 (10) | 0.0073 (10) | −0.0124 (12) |
O1—C3 | 1.454 (3) | C20—C22 | 1.417 (3) |
O2—C14 | 1.456 (3) | C20—C21 | 1.354 (3) |
O2—C15 | 1.439 (3) | C22—C23 | 1.356 (3) |
O3—C16 | 1.435 (3) | C23—C24 | 1.416 (3) |
O4—C24 | 1.256 (3) | C1—H1C | 0.9700 |
O1—H1B | 0.8200 | C1—H1D | 0.9700 |
O3—H3A | 0.8200 | C2—H2B | 0.9700 |
O1W—H1WB | 0.80 (5) | C2—H2A | 0.9700 |
O1W—H1WA | 0.93 (4) | C3—H3B | 0.9800 |
N1—C24 | 1.359 (3) | C4—H4A | 0.9700 |
N1—C21 | 1.371 (3) | C4—H4B | 0.9700 |
N1—H1A | 0.8600 | C5—H5A | 0.9800 |
C1—C2 | 1.514 (3) | C6—H6B | 0.9700 |
C1—C10 | 1.539 (3) | C6—H6A | 0.9700 |
C2—C3 | 1.515 (3) | C7—H7B | 0.9700 |
C3—C4 | 1.521 (3) | C7—H7A | 0.9700 |
C4—C5 | 1.520 (3) | C8—H8A | 0.9800 |
C5—C10 | 1.548 (3) | C9—H9A | 0.9800 |
C5—C6 | 1.525 (3) | C11—H11A | 0.9700 |
C6—C7 | 1.530 (3) | C11—H11B | 0.9700 |
C7—C8 | 1.527 (3) | C12—H12A | 0.9700 |
C8—C14 | 1.512 (3) | C12—H12B | 0.9700 |
C8—C9 | 1.543 (3) | C15—H15A | 0.9800 |
C9—C10 | 1.557 (3) | C16—H16A | 0.9800 |
C9—C11 | 1.531 (3) | C17—H17A | 0.9800 |
C10—C18 | 1.525 (4) | C18—H18B | 0.9600 |
C11—C12 | 1.531 (3) | C18—H18A | 0.9600 |
C12—C13 | 1.544 (3) | C18—H18C | 0.9600 |
C13—C19 | 1.520 (4) | C19—H19B | 0.9600 |
C13—C14 | 1.515 (3) | C19—H19C | 0.9600 |
C13—C17 | 1.573 (3) | C19—H19A | 0.9600 |
C14—C15 | 1.457 (3) | C21—H21A | 0.9300 |
C15—C16 | 1.504 (3) | C22—H22A | 0.9300 |
C16—C17 | 1.553 (3) | C23—H23A | 0.9300 |
C17—C20 | 1.514 (3) | ||
C14—O2—C15 | 60.45 (15) | C3—C2—H2A | 109.00 |
C3—O1—H1B | 109.00 | C1—C2—H2A | 109.00 |
C16—O3—H3A | 109.00 | H2A—C2—H2B | 108.00 |
H1WA—O1W—H1WB | 99 (4) | C3—C2—H2B | 109.00 |
C21—N1—C24 | 124.38 (19) | O1—C3—H3B | 110.00 |
C21—N1—H1A | 118.00 | C4—C3—H3B | 109.00 |
C24—N1—H1A | 118.00 | C2—C3—H3B | 109.00 |
C2—C1—C10 | 115.27 (19) | C3—C4—H4B | 109.00 |
C1—C2—C3 | 110.9 (2) | C5—C4—H4A | 109.00 |
O1—C3—C4 | 108.16 (19) | C5—C4—H4B | 109.00 |
C2—C3—C4 | 110.28 (19) | H4A—C4—H4B | 108.00 |
O1—C3—C2 | 109.92 (18) | C3—C4—H4A | 109.00 |
C3—C4—C5 | 114.00 (19) | C6—C5—H5A | 107.00 |
C4—C5—C10 | 113.4 (2) | C10—C5—H5A | 107.00 |
C6—C5—C10 | 111.9 (2) | C4—C5—H5A | 107.00 |
C4—C5—C6 | 111.2 (2) | C5—C6—H6B | 109.00 |
C5—C6—C7 | 112.69 (19) | C7—C6—H6A | 109.00 |
C6—C7—C8 | 111.6 (2) | C7—C6—H6B | 109.00 |
C9—C8—C14 | 109.93 (19) | H6A—C6—H6B | 108.00 |
C7—C8—C14 | 113.71 (19) | C5—C6—H6A | 109.00 |
C7—C8—C9 | 111.45 (19) | C6—C7—H7A | 109.00 |
C8—C9—C11 | 111.21 (19) | C6—C7—H7B | 109.00 |
C8—C9—C10 | 110.74 (18) | C8—C7—H7B | 109.00 |
C10—C9—C11 | 113.87 (19) | H7A—C7—H7B | 108.00 |
C5—C10—C18 | 109.6 (2) | C8—C7—H7A | 109.00 |
C1—C10—C18 | 105.9 (2) | C7—C8—H8A | 107.00 |
C1—C10—C5 | 107.88 (19) | C9—C8—H8A | 107.00 |
C9—C10—C18 | 111.25 (19) | C14—C8—H8A | 107.00 |
C1—C10—C9 | 111.63 (19) | C8—C9—H9A | 107.00 |
C5—C10—C9 | 110.39 (18) | C10—C9—H9A | 107.00 |
C9—C11—C12 | 112.38 (19) | C11—C9—H9A | 107.00 |
C11—C12—C13 | 113.08 (19) | C9—C11—H11B | 109.00 |
C14—C13—C17 | 104.82 (18) | C12—C11—H11A | 109.00 |
C12—C13—C14 | 105.37 (18) | C9—C11—H11A | 109.00 |
C14—C13—C19 | 113.1 (2) | H11A—C11—H11B | 108.00 |
C17—C13—C19 | 113.08 (18) | C12—C11—H11B | 109.00 |
C12—C13—C17 | 108.66 (18) | C11—C12—H12A | 109.00 |
C12—C13—C19 | 111.3 (2) | C13—C12—H12A | 109.00 |
O2—C14—C8 | 115.95 (19) | C13—C12—H12B | 109.00 |
O2—C14—C15 | 59.19 (14) | H12A—C12—H12B | 108.00 |
C8—C14—C13 | 118.86 (19) | C11—C12—H12B | 109.00 |
O2—C14—C13 | 112.31 (17) | O2—C15—H15A | 120.00 |
C13—C14—C15 | 109.41 (18) | C14—C15—H15A | 120.00 |
C8—C14—C15 | 126.6 (2) | C16—C15—H15A | 120.00 |
O2—C15—C16 | 113.50 (19) | O3—C16—H16A | 109.00 |
O2—C15—C14 | 60.36 (14) | C15—C16—H16A | 109.00 |
C14—C15—C16 | 110.0 (2) | C17—C16—H16A | 109.00 |
C15—C16—C17 | 105.27 (18) | C16—C17—H17A | 107.00 |
O3—C16—C17 | 113.38 (18) | C20—C17—H17A | 107.00 |
O3—C16—C15 | 111.32 (19) | C13—C17—H17A | 107.00 |
C16—C17—C20 | 114.47 (18) | C10—C18—H18B | 109.00 |
C13—C17—C20 | 117.02 (19) | C10—C18—H18C | 110.00 |
C13—C17—C16 | 104.74 (18) | C10—C18—H18A | 109.00 |
C17—C20—C21 | 119.9 (2) | H18A—C18—H18C | 109.00 |
C21—C20—C22 | 115.8 (2) | H18B—C18—H18C | 109.00 |
C17—C20—C22 | 124.4 (2) | H18A—C18—H18B | 109.00 |
N1—C21—C20 | 121.7 (2) | C13—C19—H19A | 109.00 |
C20—C22—C23 | 121.9 (2) | C13—C19—H19B | 109.00 |
C22—C23—C24 | 121.9 (2) | H19A—C19—H19B | 109.00 |
O4—C24—C23 | 125.8 (2) | H19A—C19—H19C | 109.00 |
O4—C24—N1 | 119.9 (2) | C13—C19—H19C | 109.00 |
N1—C24—C23 | 114.4 (2) | H19B—C19—H19C | 109.00 |
C2—C1—H1C | 108.00 | C20—C21—H21A | 119.00 |
C10—C1—H1C | 108.00 | N1—C21—H21A | 119.00 |
C10—C1—H1D | 108.00 | C20—C22—H22A | 119.00 |
C2—C1—H1D | 108.00 | C23—C22—H22A | 119.00 |
H1C—C1—H1D | 108.00 | C22—C23—H23A | 119.00 |
C1—C2—H2B | 109.00 | C24—C23—H23A | 119.00 |
C15—O2—C14—C8 | 118.8 (2) | C10—C9—C11—C12 | 178.82 (19) |
C15—O2—C14—C13 | −100.0 (2) | C9—C11—C12—C13 | −57.6 (3) |
C14—O2—C15—C16 | 100.5 (2) | C11—C12—C13—C14 | 54.6 (2) |
C24—N1—C21—C20 | 1.4 (3) | C11—C12—C13—C17 | 166.44 (19) |
C21—N1—C24—O4 | 177.9 (2) | C11—C12—C13—C19 | −68.4 (3) |
C21—N1—C24—C23 | −2.1 (3) | C12—C13—C14—O2 | 164.85 (17) |
C10—C1—C2—C3 | 56.9 (3) | C12—C13—C14—C8 | −55.1 (3) |
C2—C1—C10—C5 | −53.0 (2) | C12—C13—C14—C15 | 101.1 (2) |
C2—C1—C10—C9 | 68.5 (3) | C17—C13—C14—O2 | 50.3 (2) |
C2—C1—C10—C18 | −170.3 (2) | C17—C13—C14—C8 | −169.7 (2) |
C1—C2—C3—O1 | 65.1 (2) | C17—C13—C14—C15 | −13.5 (2) |
C1—C2—C3—C4 | −54.1 (2) | C19—C13—C14—O2 | −73.4 (2) |
O1—C3—C4—C5 | −66.7 (2) | C19—C13—C14—C8 | 66.7 (3) |
C2—C3—C4—C5 | 53.6 (3) | C19—C13—C14—C15 | −137.1 (2) |
C3—C4—C5—C6 | −179.94 (18) | C12—C13—C17—C16 | −89.8 (2) |
C3—C4—C5—C10 | −52.8 (2) | C12—C13—C17—C20 | 142.3 (2) |
C4—C5—C6—C7 | 74.5 (3) | C14—C13—C17—C16 | 22.5 (2) |
C10—C5—C6—C7 | −53.5 (3) | C14—C13—C17—C20 | −105.5 (2) |
C4—C5—C10—C1 | 49.7 (2) | C19—C13—C17—C16 | 146.2 (2) |
C4—C5—C10—C9 | −72.6 (2) | C19—C13—C17—C20 | 18.2 (3) |
C4—C5—C10—C18 | 164.56 (19) | O2—C14—C15—C16 | −106.3 (2) |
C6—C5—C10—C1 | 176.39 (18) | C8—C14—C15—O2 | −101.1 (2) |
C6—C5—C10—C9 | 54.2 (3) | C8—C14—C15—C16 | 152.6 (2) |
C6—C5—C10—C18 | −68.7 (2) | C13—C14—C15—O2 | 104.98 (19) |
C5—C6—C7—C8 | 53.6 (3) | C13—C14—C15—C16 | −1.3 (3) |
C6—C7—C8—C9 | −55.0 (3) | O2—C15—C16—O3 | 73.6 (2) |
C6—C7—C8—C14 | −180.0 (2) | O2—C15—C16—C17 | −49.7 (2) |
C7—C8—C9—C10 | 56.5 (2) | C14—C15—C16—O3 | 139.0 (2) |
C7—C8—C9—C11 | −175.82 (18) | C14—C15—C16—C17 | 15.8 (2) |
C14—C8—C9—C10 | −176.48 (19) | O3—C16—C17—C13 | −145.25 (19) |
C14—C8—C9—C11 | −48.8 (3) | O3—C16—C17—C20 | −15.8 (3) |
C7—C8—C14—O2 | −41.8 (3) | C15—C16—C17—C13 | −23.3 (2) |
C7—C8—C14—C13 | 179.6 (2) | C15—C16—C17—C20 | 106.2 (2) |
C7—C8—C14—C15 | 27.8 (3) | C13—C17—C20—C21 | −107.9 (2) |
C9—C8—C14—O2 | −167.51 (19) | C13—C17—C20—C22 | 72.7 (3) |
C9—C8—C14—C13 | 53.9 (3) | C16—C17—C20—C21 | 129.0 (2) |
C9—C8—C14—C15 | −97.9 (3) | C16—C17—C20—C22 | −50.4 (3) |
C8—C9—C10—C1 | −175.57 (19) | C17—C20—C21—N1 | −179.4 (2) |
C8—C9—C10—C5 | −55.6 (3) | C22—C20—C21—N1 | 0.0 (3) |
C8—C9—C10—C18 | 66.3 (3) | C17—C20—C22—C23 | 178.9 (2) |
C11—C9—C10—C1 | 58.2 (3) | C21—C20—C22—C23 | −0.5 (3) |
C11—C9—C10—C5 | 178.21 (19) | C20—C22—C23—C24 | −0.3 (4) |
C11—C9—C10—C18 | −59.9 (3) | C22—C23—C24—O4 | −178.5 (2) |
C8—C9—C11—C12 | 52.9 (3) | C22—C23—C24—N1 | 1.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O4i | 0.93 (4) | 1.79 (4) | 2.710 (3) | 170 (4) |
O1W—H1WB···O3 | 0.80 (5) | 2.07 (5) | 2.867 (3) | 170 (4) |
N1—H1A···O1ii | 0.86 | 2.00 | 2.839 (3) | 165 |
O1—H1B···O1Wiii | 0.82 | 1.90 | 2.690 (3) | 161 |
O3—H3A···O1iv | 0.82 | 2.09 | 2.868 (2) | 157 |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z+1; (iii) −x+1, y+1/2, −z; (iv) x, y, z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O4i | 0.93 (4) | 1.79 (4) | 2.710 (3) | 170 (4) |
O1W—H1WB···O3 | 0.80 (5) | 2.07 (5) | 2.867 (3) | 170 (4) |
N1—H1A···O1ii | 0.86 | 2.00 | 2.839 (3) | 165 |
O1—H1B···O1Wiii | 0.82 | 1.90 | 2.690 (3) | 161 |
O3—H3A···O1iv | 0.82 | 2.09 | 2.868 (2) | 157 |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z+1; (iii) −x+1, y+1/2, −z; (iv) x, y, z+1. |
Acknowledgements
This work was supported by the 111 Project (No. B13038) from the Ministry of Education of the People's Republic of China.
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Deacetylcinobufagin is a natural cardiactonic steroid which has been isolated from the skin of the toad (Li et al., 2007) and has also been biosynthesized by microbial transformation of cinobufagin (Zhan et al., 2003). Compounds of this type have shown strong cytotoxic effects against a wide range of cancer cells (Yu et al., 2008). However they also possess cardiac toxicity due to the inhibition of sodium-potassium ATPase (Tian et al., 2013). Thus structural modification of the pharmacological profile of the molecule was warranted. Recently we treated deacetylcinobufagin (isolated in our laboratory) with ammonium acetate, and a new hydrated derivative, C24H33O4N . H2O, the title compound, named deacetylcinobufalactam, was obtained after recrystallization from methanol at room temperature. We report herein the crystal structure of this compound.
The molecule of the title compound (Fig. 1) consists of three cyclohexane rings (A, B and C), one five-membered ring (D), one six-membered lactam ring (E) and an epoxide ring (F). The stereochemistry of the ring juncture is A/B cis, B/C trans, C/D cis and D/F cis. The cyclohexane rings A, B and C have normal chair conformations. The five-membered ring (D adopts an envelope conformation with C17 displaced by -0.381 (3) Å from the mean plane of the remaining four atoms (C13, C14, C15 and C16). The lactam ring (E) and the epoxide ring (F) are planar and roughly perpendicular to each other with a dihedral angle of 96.6 (4)°. The absolute configuration determined for bufalin (Rohrer et al., 1982), a similar cardiactonic steroid, was invoked, giving the assignments of the 10 chiral centres in the title molecule as shown in Fig. 1.
In the crystal, intermolecular hydroxyl and water O—H···O hydrogen bonds to hydroxyl, carbonyl and water O-atom acceptors and a hetero-amine N—H···Ohydroxyl hydrogen bond (Table 1) link the molecules into a three-dimensional network structure (Figure 2).