organic compounds
Bis(2-amino-4-methyl-6-oxo-3,6-dihydropyrimidin-1-ium) sulfate monohydrate
aLaboratoire de Chimie des Matériaux, Faculté des Sciences de Bizerte, 7021 Zarzouna, Tunisia, bCristallographie, Résonance Magnétique et Modélisations (CRM2), UMR CNRS 7036, Institut Jean Barriol, Université de Lorraine, BP 70239, Bd des Aiguillettes, 54506 Vandoeuvre-les-Nancy, France, and cLaboratoire de Chimie des Matériaux, Faculté des sciences de Bizerte, 7021 Zarzouna, Tunisia
*Correspondence e-mail: cherif_bennasr@yahoo.fr
In the title hydrated molecular salt, 2C5H8N3O+·SO42−·H2O, the components are linked by N—H⋯Os and Ow—H⋯Os (s = sulphate, w = water) hydrogen bonds, generating a layer by a+b+c and 2a−b translations. The cations are arranged nearly in parallel and show displaced π–π stacking centroid–centroid distance = 4.661 (2) Å between adjacent layers.
CCDC reference: 1005732
Related literature
For the applications of oxoanion compounds, see: Vollano et al. (1984); Molloy (1988). For graph-set motifs, see: Bernstein et al. (1995). For the stability of the quinonic and phenolic form in polar solvents, see: Fragoso et al. (2010). For C—N single bond lengths, see: Yang et al. (1995); Grobelny et al. (1995). For the geometrical characteristics of the sulfate anion, see: Das et al. (2009); Norquist et al. (2005).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2012); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97.
Supporting information
CCDC reference: 1005732
https://doi.org/10.1107/S1600536814012513/bg2531sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536814012513/bg2531Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536814012513/bg2531Isup3.cml
Commercial 2-amino-4-hydroxy-6-methylpyrimidine (50 mg, 0.4 mmol) dissolved in ethanol (10 ml) was slowly added under stirring to 0.05 mol of sulfuric acid in 20 ml of water. The obtained solution was left to stand at room temperature. The slow evaporation of solvent leads to the formation of colourless single crystals of (I), stable in air and suitable for X-ray diffraction analysis.
The structure was refined with SHELXL97 (Sheldrick, 2008). The coordinates of the H atoms were refined with Uiso(H) = 1.2Ueq(X) except for the methyl groups for which Uiso(H) was set to 1.5Ueq(X), where X is the parent atom. The C—H distances in the two methyl groups were restraint to be similar (sigma=0.01).
Chemists and physicists of the solid state have shown an increasing interest in the study of oxoanion compounds containing organic cations in recent years owing to their applications in various fields (Vollano et al., 1984; Molloy, 1988). Here, we report the synthesis and the π- staking is d(O3···N17) = 3.375 (2) Å. When the two cation molecules are viewed along the two centroids, the 6 atom positions of the two cycles appear superposed after a rotation of 60° (Fig. 1). The of the title material consists of a network of the different constituents connected by a set of hydrogen bonds (Table 1). Furthermore, in the crystal packing, the two cations are arranged in layers (Fig. 2). The sulfate anion forms the strongest interactions between two parallel layers, as each sulfate moiety interacts with the five cations via seven N—H···O hydrogen bonds. The hydrogen bond network in the cations layer is shown in Fig. 3. The water molecule is acceptor in one N—H···O hydrogen bond and donor in two O—H···O interactions with the sulfate anion and carbonyl group. In the atomic arrangement of the title compound, the sulfate anions are located close to the z=0 plane. Along the a diretion, they are interconnected via a same NH2 group. In the various graph set motifs (Bernstein et al., 1995) are apparent including R24 (8) and R36 (8) loops (Fig. 4). An examination of Table 2 data shows that the distance values of C3—O3 (1.229 (2) Å) and C13—O13 (1.226 (2) Å) can be attributed as having clear double bond character indicating that the title compound is present as the keto tautomer of the 2-amino-6-methyl-4-pyrimidinol(sheme. 2). This observation agrees with the literature data which show that in polar solvents, the quinonic form is more stable than the phenolic one (Fragoso et al., 2010). The C—N bond distances of the NH2 groups are C1—N1 (1.315 (2) Å), and C11—N11 (1.318 (2) Å) which are short for C—N single bonds, but still not quite as contracted as one would expect for a fully established C=N double bond. These bond length features are consistent with an imino resonance form as it is commonly found for a C—N single bond involving sp2 hybridized C and N atoms, (Yang et al., 1995; Grobelny et al., 1995). The S—O bond lengths and the O—S—O bond angles in the sulfate anion are not perfectly equivalent (Das et al., 2009; Norquist et al., 2005), but vary with the environment around the O atoms. In the title compound, the S—O distances are spread between 1.4759 (14) and 1.4949 (16) Å. The O—S—O bond angles range from 108,97 (8) to 110.24 (9)°. All these geometrical parameters indicate relatively little distortion from a regular tetrahedron.
of the title compound 2(C5H8N3O), O4S, H2O. The of this salt contains two molecules of 2-amino-6-methylpyrimidin-4-(1H)-one, one sulfate anion and one water molecule (Fig. 1). The two independent aromatic cycles of the are nearly parallel as they form an angle of 5.8°. The shortest distance between non-H atoms of two cations in parallel displacedFor the applications of oxoanion compounds, see: Vollano et al. (1984); Molloy (1988). For graph-set motifs, see: Bernstein et al. (1995). For the stability of the quinonic and phenolic form in
see: Fragoso et al. (2010). For C—N single bond lengths, see: Yang et al. (1995); Grobelny et al. (1995). For the geometrical characteristics of the sulfate anion, see: Das et al. (2009); Norquist et al. (2005).Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2012); data reduction: SAINT (Bruker, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. ORTEP view of the title compound, showing 50% probability thermal displacement ellipsoids and spheres for the H atoms. | |
Fig. 2. View showing the planes formed by the two independant cations molecules. The sulfate anions form the strongest interactions between two parallel layers. | |
Fig. 3. View perpendicular to Fig. 2 showing hydrogen bonds stabilizing the structure of the title material in the layer containing the cations. | |
Fig. 4. View along the c-axis showing O—H···O and N—H···O hydrogen bonds forming two kinds of 8-membered rings. |
2C5H8N3O+·SO42−·H2O | V = 768.2 (8) Å3 |
Mr = 366.36 | Z = 2 |
Triclinic, P1 | F(000) = 384 |
Hall symbol: -P 1 | Dx = 1.584 Mg m−3 |
a = 6.797 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.339 (6) Å | θ = 2.2–33.4° |
c = 12.110 (7) Å | µ = 0.26 mm−1 |
α = 113.480 (5)° | T = 100 K |
β = 91.009 (7)° | Prism, colourless |
γ = 98.906 (5)° | 0.27 × 0.19 × 0.12 mm |
Bruker APEXII CCD diffractometer | 5784 independent reflections |
Radiation source: fine-focus sealed tube | 5347 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.000 |
ω scans | θmax = 33.1°, θmin = 3.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | h = 0→10 |
Tmin = 0.92, Tmax = 0.97 | k = −15→15 |
5784 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.081 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.131 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.35 | w = 1/[σ2(Fo2) + (0.044P)2 + 0.4148P] where P = (Fo2 + 2Fc2)/3 |
5784 reflections | (Δ/σ)max < 0.001 |
289 parameters | Δρmax = 0.64 e Å−3 |
15 restraints | Δρmin = −0.38 e Å−3 |
2C5H8N3O+·SO42−·H2O | γ = 98.906 (5)° |
Mr = 366.36 | V = 768.2 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.797 (5) Å | Mo Kα radiation |
b = 10.339 (6) Å | µ = 0.26 mm−1 |
c = 12.110 (7) Å | T = 100 K |
α = 113.480 (5)° | 0.27 × 0.19 × 0.12 mm |
β = 91.009 (7)° |
Bruker APEXII CCD diffractometer | 5784 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | 5347 reflections with I > 2σ(I) |
Tmin = 0.92, Tmax = 0.97 | Rint = 0.000 |
5784 measured reflections |
R[F2 > 2σ(F2)] = 0.081 | 15 restraints |
wR(F2) = 0.131 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.35 | Δρmax = 0.64 e Å−3 |
5784 reflections | Δρmin = −0.38 e Å−3 |
289 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.32594 (6) | 0.79761 (4) | 0.06036 (4) | 0.00888 (9) | |
O4 | 0.10950 (17) | 0.75634 (13) | 0.01545 (11) | 0.0129 (2) | |
O5 | 0.39545 (18) | 0.67318 (13) | 0.06868 (11) | 0.0136 (2) | |
O6 | 0.44256 (18) | 0.84309 (13) | −0.02448 (11) | 0.0137 (2) | |
O7 | 0.34949 (19) | 0.91648 (13) | 0.18190 (11) | 0.0161 (3) | |
C1 | −0.1015 (2) | 0.07187 (17) | 0.18509 (14) | 0.0097 (3) | |
N1 | −0.1580 (2) | −0.04398 (16) | 0.08537 (13) | 0.0125 (3) | |
N2 | −0.2110 (2) | 0.17792 (15) | 0.22132 (13) | 0.0113 (3) | |
C3 | −0.1599 (2) | 0.30560 (18) | 0.32540 (15) | 0.0121 (3) | |
O3 | −0.2627 (2) | 0.39938 (14) | 0.34694 (12) | 0.0188 (3) | |
C4 | 0.0171 (3) | 0.31382 (18) | 0.39715 (15) | 0.0128 (3) | |
C5 | 0.1275 (2) | 0.20844 (17) | 0.35890 (15) | 0.0109 (3) | |
C6 | 0.3178 (3) | 0.2130 (2) | 0.42459 (17) | 0.0171 (3) | |
N7 | 0.0687 (2) | 0.08908 (15) | 0.25224 (13) | 0.0108 (3) | |
C11 | −0.0959 (2) | 0.61151 (17) | 0.19155 (15) | 0.0113 (3) | |
N11 | −0.2643 (2) | 0.58800 (17) | 0.12550 (14) | 0.0145 (3) | |
N12 | −0.0358 (2) | 0.73732 (16) | 0.28733 (13) | 0.0138 (3) | |
C13 | 0.1415 (3) | 0.76947 (19) | 0.36118 (16) | 0.0151 (3) | |
O13 | 0.1845 (2) | 0.88853 (14) | 0.44418 (12) | 0.0226 (3) | |
C14 | 0.2552 (3) | 0.65558 (19) | 0.33060 (16) | 0.0153 (3) | |
C15 | 0.1953 (2) | 0.53064 (18) | 0.23358 (15) | 0.0119 (3) | |
C16 | 0.3067 (3) | 0.4085 (2) | 0.18954 (17) | 0.0149 (3) | |
N17 | 0.0195 (2) | 0.51065 (15) | 0.16497 (13) | 0.0111 (3) | |
O8 | 0.6783 (2) | 0.91155 (15) | 0.32711 (12) | 0.0190 (3) | |
H1A | −0.274 (4) | −0.063 (3) | 0.046 (2) | 0.020 (6)* | |
H1B | −0.082 (4) | −0.104 (3) | 0.064 (2) | 0.019 (6)* | |
H2 | −0.310 (4) | 0.173 (3) | 0.168 (2) | 0.028 (7)* | |
H4 | 0.060 (4) | 0.398 (2) | 0.472 (2) | 0.019 (6)* | |
H6A | 0.344 (3) | 0.302 (3) | 0.4979 (18) | 0.032 (7)* | |
H6B | 0.425 (2) | 0.212 (3) | 0.379 (2) | 0.031 (7)* | |
H6C | 0.306 (4) | 0.130 (3) | 0.444 (2) | 0.038 (8)* | |
H7 | 0.143 (4) | 0.028 (3) | 0.230 (2) | 0.029 (7)* | |
H11A | −0.303 (4) | 0.505 (3) | 0.065 (3) | 0.029 (7)* | |
H11B | −0.337 (4) | 0.657 (3) | 0.143 (2) | 0.026 (6)* | |
H12 | −0.118 (4) | 0.804 (3) | 0.305 (2) | 0.027 (6)* | |
H14 | 0.374 (4) | 0.672 (3) | 0.378 (2) | 0.023 (6)* | |
H16A | 0.417 (3) | 0.424 (3) | 0.245 (2) | 0.031 (7)* | |
H16B | 0.351 (3) | 0.397 (2) | 0.1108 (18) | 0.024 (6)* | |
H16C | 0.220 (4) | 0.3214 (14) | 0.178 (2) | 0.021 (6)* | |
H17 | −0.020 (4) | 0.432 (3) | 0.109 (3) | 0.030 (7)* | |
H8A | 0.694 (5) | 0.983 (3) | 0.396 (3) | 0.041 (8)* | |
H8B | 0.577 (4) | 0.914 (3) | 0.290 (3) | 0.030 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.00752 (16) | 0.00803 (17) | 0.00983 (17) | 0.00195 (12) | −0.00157 (12) | 0.00220 (13) |
O4 | 0.0068 (5) | 0.0115 (5) | 0.0166 (6) | 0.0011 (4) | −0.0022 (4) | 0.0021 (4) |
O5 | 0.0146 (6) | 0.0110 (5) | 0.0163 (6) | 0.0039 (4) | −0.0024 (5) | 0.0062 (5) |
O6 | 0.0106 (5) | 0.0167 (6) | 0.0154 (6) | 0.0004 (4) | −0.0017 (4) | 0.0090 (5) |
O7 | 0.0152 (6) | 0.0146 (6) | 0.0124 (6) | 0.0066 (5) | −0.0038 (5) | −0.0022 (4) |
C1 | 0.0081 (6) | 0.0115 (7) | 0.0100 (7) | 0.0016 (5) | 0.0006 (5) | 0.0048 (6) |
N1 | 0.0091 (6) | 0.0125 (6) | 0.0126 (6) | 0.0027 (5) | −0.0017 (5) | 0.0015 (5) |
N2 | 0.0098 (6) | 0.0124 (6) | 0.0113 (6) | 0.0043 (5) | −0.0009 (5) | 0.0034 (5) |
C3 | 0.0113 (7) | 0.0123 (7) | 0.0119 (7) | 0.0020 (6) | 0.0001 (6) | 0.0041 (6) |
O3 | 0.0181 (6) | 0.0157 (6) | 0.0202 (6) | 0.0088 (5) | −0.0010 (5) | 0.0028 (5) |
C4 | 0.0133 (7) | 0.0115 (7) | 0.0116 (7) | 0.0019 (6) | −0.0020 (6) | 0.0026 (6) |
C5 | 0.0099 (7) | 0.0110 (7) | 0.0111 (7) | 0.0000 (5) | −0.0015 (5) | 0.0044 (6) |
C6 | 0.0141 (8) | 0.0163 (8) | 0.0184 (8) | 0.0029 (6) | −0.0066 (6) | 0.0048 (7) |
N7 | 0.0088 (6) | 0.0101 (6) | 0.0117 (6) | 0.0030 (5) | −0.0013 (5) | 0.0022 (5) |
C11 | 0.0107 (7) | 0.0110 (7) | 0.0121 (7) | 0.0009 (6) | 0.0004 (6) | 0.0051 (6) |
N11 | 0.0112 (6) | 0.0115 (6) | 0.0186 (7) | 0.0032 (5) | −0.0040 (5) | 0.0037 (6) |
N12 | 0.0143 (7) | 0.0109 (6) | 0.0132 (6) | 0.0026 (5) | −0.0013 (5) | 0.0019 (5) |
C13 | 0.0162 (8) | 0.0151 (8) | 0.0122 (7) | 0.0002 (6) | −0.0014 (6) | 0.0048 (6) |
O13 | 0.0290 (7) | 0.0153 (6) | 0.0152 (6) | −0.0003 (5) | −0.0051 (5) | −0.0007 (5) |
C14 | 0.0135 (8) | 0.0181 (8) | 0.0128 (7) | 0.0004 (6) | −0.0038 (6) | 0.0056 (6) |
C15 | 0.0092 (7) | 0.0156 (7) | 0.0129 (7) | 0.0018 (6) | −0.0003 (6) | 0.0081 (6) |
C16 | 0.0111 (7) | 0.0178 (8) | 0.0173 (8) | 0.0052 (6) | 0.0008 (6) | 0.0077 (7) |
N17 | 0.0093 (6) | 0.0100 (6) | 0.0116 (6) | 0.0015 (5) | −0.0019 (5) | 0.0021 (5) |
O8 | 0.0199 (7) | 0.0198 (7) | 0.0130 (6) | 0.0092 (5) | −0.0041 (5) | 0.0004 (5) |
S1—O5 | 1.4759 (14) | N7—H7 | 0.83 (3) |
S1—O7 | 1.4805 (14) | C11—N11 | 1.318 (2) |
S1—O6 | 1.4843 (14) | C11—N17 | 1.342 (2) |
S1—O4 | 1.4949 (16) | C11—N12 | 1.349 (2) |
C1—N1 | 1.315 (2) | N11—H11A | 0.87 (3) |
C1—N7 | 1.349 (2) | N11—H11B | 0.89 (3) |
C1—N2 | 1.353 (2) | N12—C13 | 1.402 (2) |
N1—H1A | 0.87 (3) | N12—H12 | 0.91 (3) |
N1—H1B | 0.83 (3) | C13—O13 | 1.226 (2) |
N2—C3 | 1.403 (2) | C13—C14 | 1.437 (3) |
N2—H2 | 0.91 (3) | C14—C15 | 1.351 (2) |
C3—O3 | 1.229 (2) | C14—H14 | 0.94 (3) |
C3—C4 | 1.443 (2) | C15—N17 | 1.383 (2) |
C4—C5 | 1.352 (2) | C15—C16 | 1.492 (3) |
C4—H4 | 0.97 (2) | C16—H16A | 0.95 (2) |
C5—N7 | 1.382 (2) | C16—H16B | 0.972 (19) |
C5—C6 | 1.491 (2) | C16—H16C | 0.953 (19) |
C6—H6A | 0.98 (2) | N17—H17 | 0.83 (3) |
C6—H6B | 0.92 (2) | O8—H8A | 0.86 (3) |
C6—H6C | 0.97 (2) | O8—H8B | 0.82 (3) |
O5—S1—O7 | 109.31 (8) | C1—N7—H7 | 120.5 (19) |
O5—S1—O6 | 109.99 (8) | C5—N7—H7 | 117.9 (19) |
O7—S1—O6 | 110.24 (9) | N11—C11—N17 | 120.64 (15) |
O5—S1—O4 | 108.97 (8) | N11—C11—N12 | 120.77 (16) |
O7—S1—O4 | 108.81 (7) | N17—C11—N12 | 118.59 (15) |
O6—S1—O4 | 109.49 (8) | C11—N11—H11A | 119.9 (18) |
N1—C1—N7 | 120.88 (15) | C11—N11—H11B | 119.6 (17) |
N1—C1—N2 | 120.63 (15) | H11A—N11—H11B | 120 (2) |
N7—C1—N2 | 118.48 (15) | C11—N12—C13 | 123.73 (15) |
C1—N1—H1A | 122.7 (16) | C11—N12—H12 | 117.5 (17) |
C1—N1—H1B | 117.4 (17) | C13—N12—H12 | 118.8 (17) |
H1A—N1—H1B | 120 (2) | O13—C13—N12 | 118.40 (17) |
C1—N2—C3 | 124.22 (14) | O13—C13—C14 | 126.54 (17) |
C1—N2—H2 | 116.8 (17) | N12—C13—C14 | 115.06 (15) |
C3—N2—H2 | 118.0 (17) | C15—C14—C13 | 120.77 (16) |
O3—C3—N2 | 119.39 (15) | C15—C14—H14 | 121.2 (15) |
O3—C3—C4 | 125.98 (16) | C13—C14—H14 | 118.0 (15) |
N2—C3—C4 | 114.61 (14) | C14—C15—N17 | 119.59 (16) |
C5—C4—C3 | 120.56 (15) | C14—C15—C16 | 125.40 (16) |
C5—C4—H4 | 120.1 (14) | N17—C15—C16 | 115.00 (15) |
C3—C4—H4 | 119.2 (14) | C15—C16—H16A | 110.6 (13) |
C4—C5—N7 | 120.36 (15) | C15—C16—H16B | 109.0 (12) |
C4—C5—C6 | 123.67 (15) | H16A—C16—H16B | 111 (2) |
N7—C5—C6 | 115.96 (15) | C15—C16—H16C | 110.2 (12) |
C5—C6—H6A | 108.6 (13) | H16A—C16—H16C | 110 (2) |
C5—C6—H6B | 112.1 (14) | H16B—C16—H16C | 106 (2) |
H6A—C6—H6B | 108 (2) | C11—N17—C15 | 122.20 (15) |
C5—C6—H6C | 109.4 (14) | C11—N17—H17 | 119.0 (19) |
H6A—C6—H6C | 111 (2) | C15—N17—H17 | 118.7 (19) |
H6B—C6—H6C | 108 (2) | H8A—O8—H8B | 108 (3) |
C1—N7—C5 | 121.60 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O6i | 0.87 (3) | 2.02 (3) | 2.856 (3) | 161 (3) |
N1—H1B···O4ii | 0.83 (3) | 2.01 (3) | 2.847 (4) | 178 (2) |
N2—H2···O6iii | 0.91 (3) | 1.88 (2) | 2.749 (4) | 161 (2) |
N7—H7···O7ii | 0.83 (3) | 1.91 (3) | 2.730 (4) | 170 (3) |
N11—H11A···O5iii | 0.87 (3) | 1.91 (3) | 2.782 (6) | 178 (3) |
N11—H11B···O5iv | 0.89 (3) | 2.07 (3) | 2.767 (3) | 134 (2) |
N12—H12···O8iv | 0.92 (3) | 1.87 (3) | 2.771 (4) | 170 (3) |
N17—H17···O4iii | 0.82 (3) | 1.92 (3) | 2.746 (6) | 177 (3) |
O8—H8A···O13v | 0.86 (3) | 1.94 (3) | 2.750 (5) | 158 (3) |
O8—H8B···O7 | 0.83 (3) | 2.02 (3) | 2.839 (4) | 173 (3) |
C4—H4···O3vi | 0.97 (2) | 2.54 (2) | 3.485 (3) | 165 (2) |
C6—H6C···O13ii | 0.97 | 2.51 | 3.440 (3) | 162 (2) |
C16—H16A···O3vii | 0.95 | 2.58 | 3.499 (5) | 163 (2) |
Symmetry codes: (i) x−1, y−1, z; (ii) x, y−1, z; (iii) −x, −y+1, −z; (iv) x−1, y, z; (v) −x+1, −y+2, −z+1; (vi) −x, −y+1, −z+1; (vii) x+1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O6i | 0.87 (3) | 2.02 (3) | 2.856 (3) | 161 (3) |
N1—H1B···O4ii | 0.83 (3) | 2.01 (3) | 2.847 (4) | 178 (2) |
N2—H2···O6iii | 0.91 (3) | 1.88 (2) | 2.749 (4) | 161 (2) |
N7—H7···O7ii | 0.83 (3) | 1.91 (3) | 2.730 (4) | 170 (3) |
N11—H11A···O5iii | 0.87 (3) | 1.91 (3) | 2.782 (6) | 178 (3) |
N11—H11B···O5iv | 0.89 (3) | 2.07 (3) | 2.767 (3) | 134 (2) |
N12—H12···O8iv | 0.92 (3) | 1.87 (3) | 2.771 (4) | 170 (3) |
N17—H17···O4iii | 0.82 (3) | 1.92 (3) | 2.746 (6) | 177 (3) |
O8—H8A···O13v | 0.86 (3) | 1.94 (3) | 2.750 (5) | 158 (3) |
O8—H8B···O7 | 0.83 (3) | 2.02 (3) | 2.839 (4) | 173 (3) |
C4—H4···O3vi | 0.97 (2) | 2.54 (2) | 3.485 (3) | 165 (2) |
C6—H6C···O13ii | 0.968 | 2.51 | 3.440 (3) | 162 (2) |
C16—H16A···O3vii | 0.946 | 2.583 | 3.499 (5) | 163 (2) |
Symmetry codes: (i) x−1, y−1, z; (ii) x, y−1, z; (iii) −x, −y+1, −z; (iv) x−1, y, z; (v) −x+1, −y+2, −z+1; (vi) −x, −y+1, −z+1; (vii) x+1, y, z. |
Acknowledgements
We would like to acknowledge the support provided by the Secretary of State for Scientific Research and Technology of Tunisia.
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Chemists and physicists of the solid state have shown an increasing interest in the study of oxoanion compounds containing organic cations in recent years owing to their applications in various fields (Vollano et al., 1984; Molloy, 1988). Here, we report the synthesis and the crystal structure of the title compound 2(C5H8N3O), O4S, H2O. The asymmetric unit of this salt contains two molecules of 2-amino-6-methylpyrimidin-4-(1H)-one, one sulfate anion and one water molecule (Fig. 1). The two independent aromatic cycles of the asymmetric unit are nearly parallel as they form an angle of 5.8°. The shortest distance between non-H atoms of two cations in parallel displaced π- staking is d(O3···N17) = 3.375 (2) Å. When the two cation molecules are viewed along the two centroids, the 6 atom positions of the two cycles appear superposed after a rotation of 60° (Fig. 1). The crystal structure of the title material consists of a network of the different constituents connected by a set of hydrogen bonds (Table 1). Furthermore, in the crystal packing, the two cations are arranged in layers (Fig. 2). The sulfate anion forms the strongest interactions between two parallel layers, as each sulfate moiety interacts with the five cations via seven N—H···O hydrogen bonds. The hydrogen bond network in the cations layer is shown in Fig. 3. The water molecule is acceptor in one N—H···O hydrogen bond and donor in two O—H···O interactions with the sulfate anion and carbonyl group. In the atomic arrangement of the title compound, the sulfate anions are located close to the z=0 plane. Along the a diretion, they are interconnected via a same NH2 group. In the crystal structure, various graph set motifs (Bernstein et al., 1995) are apparent including R24 (8) and R36 (8) loops (Fig. 4). An examination of Table 2 data shows that the distance values of C3—O3 (1.229 (2) Å) and C13—O13 (1.226 (2) Å) can be attributed as having clear double bond character indicating that the title compound is present as the keto tautomer of the 2-amino-6-methyl-4-pyrimidinol(sheme. 2). This observation agrees with the literature data which show that in polar solvents, the quinonic form is more stable than the phenolic one (Fragoso et al., 2010). The C—N bond distances of the NH2 groups are C1—N1 (1.315 (2) Å), and C11—N11 (1.318 (2) Å) which are short for C—N single bonds, but still not quite as contracted as one would expect for a fully established C=N double bond. These bond length features are consistent with an imino resonance form as it is commonly found for a C—N single bond involving sp2 hybridized C and N atoms, (Yang et al., 1995; Grobelny et al., 1995). The S—O bond lengths and the O—S—O bond angles in the sulfate anion are not perfectly equivalent (Das et al., 2009; Norquist et al., 2005), but vary with the environment around the O atoms. In the title compound, the S—O distances are spread between 1.4759 (14) and 1.4949 (16) Å. The O—S—O bond angles range from 108,97 (8) to 110.24 (9)°. All these geometrical parameters indicate relatively little distortion from a regular tetrahedron.