organic compounds
2,6-Diamino-4-(4-chlorophenyl)-1-methyl-1,4-dihydropyridine-3,5-dicarbonitrile
aDepartment of Chemistry, Jamal Mohamed College (Autonomous), Tiruchirappalli 620 020, Tamil Nadu, India, and bSchool of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: purush.alpha@gmail.com
In the title compound, C14H12ClN5, the dihydropyridine ring adopts a shallow boat conformation. The dihedral angle between the plane of this ring and that of the chlorobenzene ring is 69.15 (15)°. In the crystal, molecules are linked by N—H⋯N and N—H⋯Cl hydrogen bonds, generating (001) sheets.
Keywords: crystal structure.
CCDC reference: 1009061
Related literature
For background to malononitrile, see: Fatiadi (1978); Raghukumar et al. (2003). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
CCDC reference: 1009061
https://doi.org/10.1107/S1600536814014354/hb7240sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536814014354/hb7240Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536814014354/hb7240Isup3.cml
Compound (I) was prepared by the reaction of p-chlorobenzaldehyde (1 mmol), malononitrile (1 mmol) and methylamine (1 mmol) in a mixed solvent of methanol and water (5:1) was stirred at room temperature about an hour. The resulting precipitate was collected by filtration and washed with methanol to afford pure product, m.p: 290 °C. The product was crystallized from methanol solution as colourless plates.
N-bound H atoms were located in a difference Fourier maps and allowed to be refined freely [refined distance: N–H = 0.83 (4)–0.89 (4) Å]. The remaining hydrogen atoms were positioned geometrically [C–H= 0.95 or 0.98 Å] and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C) or 1.5 Ueq(methyl C). A rotating-group model was used for the methyl group.
Malononitrile is a simple and versatile reagent for the synthesis of
and precursors of novel compounds. It exhibits a unique reactivity due to the strong electron withdrawing cycano groups to activate the methylene group and the polar multiple bond suitable for nucleophilic addition (Fatiadi, 1978). Malononitrile is used as reactant or in various multicomponent reactions to prepare The three component reactions of malononitrile, aldehyde and amine show very chemical diversity, from which several kinds of products were separated (Raghukumar et al., 2003). The of the title compound (I) is presented here.The molecular structure of the title compound is shown in Fig. 1. The pyridine ring (N1/C7—C11) adopts a boat conformation with puckering parameters Q= 0.402 (3) Å, Θ= 79.6 (4)° and Φ= 177.2 (4)°. The dihedral angle between the pyridine (N1/C7—C11) and benzene (C1—C6) rings is 69.15 (15) °.
The
shown in Fig. 2 features N2—H1N2···N5i and N3—H2N3···N4iii hydrogen bonds (symmetry code in Table 1) to result in tetrameric association of molecules, generated by inversion. These tetramers are then connected via N2—H2N2···Cl1ii hydrogen bond (symmetry code in Table 1), forming a layer parallel to the ab plane.For background to malononitrile, see: Fatiadi (1978); Raghukumar et al. (2003). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound with 50% probability displacement ellipsoids. | |
Fig. 2. The crystal packing of the title compound. The H atoms not involved in the intermolecular interactions (dashed lines) have been omitted for clarity. |
C14H12ClN5 | Z = 2 |
Mr = 285.74 | F(000) = 296 |
Triclinic, P1 | Dx = 1.418 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.3893 (4) Å | Cell parameters from 4444 reflections |
b = 8.4679 (5) Å | θ = 2.6–32.3° |
c = 10.2571 (6) Å | µ = 0.28 mm−1 |
α = 93.148 (4)° | T = 100 K |
β = 112.478 (3)° | Plate, colourless |
γ = 93.929 (3)° | 0.37 × 0.28 × 0.16 mm |
V = 669.11 (6) Å3 |
Bruker SMART APEXII CCD diffractometer | 3049 independent reflections |
Radiation source: fine-focus sealed tube | 2435 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.053 |
φ and ω scans | θmax = 27.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −10→10 |
Tmin = 0.904, Tmax = 0.956 | k = −10→9 |
9775 measured reflections | l = −13→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.072 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.207 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.1391P)2 + 0.3591P] where P = (Fo2 + 2Fc2)/3 |
3049 reflections | (Δ/σ)max < 0.001 |
198 parameters | Δρmax = 1.17 e Å−3 |
0 restraints | Δρmin = −0.48 e Å−3 |
C14H12ClN5 | γ = 93.929 (3)° |
Mr = 285.74 | V = 669.11 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.3893 (4) Å | Mo Kα radiation |
b = 8.4679 (5) Å | µ = 0.28 mm−1 |
c = 10.2571 (6) Å | T = 100 K |
α = 93.148 (4)° | 0.37 × 0.28 × 0.16 mm |
β = 112.478 (3)° |
Bruker SMART APEXII CCD diffractometer | 3049 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2435 reflections with I > 2σ(I) |
Tmin = 0.904, Tmax = 0.956 | Rint = 0.053 |
9775 measured reflections |
R[F2 > 2σ(F2)] = 0.072 | 0 restraints |
wR(F2) = 0.207 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 1.17 e Å−3 |
3049 reflections | Δρmin = −0.48 e Å−3 |
198 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.41603 (9) | 0.41701 (9) | −0.28944 (7) | 0.0186 (3) | |
N1 | 1.1252 (3) | 0.0360 (3) | 0.2661 (3) | 0.0153 (5) | |
N2 | 0.9603 (3) | −0.1777 (3) | 0.3020 (3) | 0.0164 (5) | |
N3 | 1.3641 (3) | 0.2241 (3) | 0.3245 (3) | 0.0171 (6) | |
N4 | 0.6529 (3) | 0.0004 (3) | 0.4178 (3) | 0.0184 (6) | |
N5 | 1.2267 (3) | 0.5888 (3) | 0.4289 (3) | 0.0198 (6) | |
C1 | 0.8304 (4) | 0.4173 (4) | 0.0726 (3) | 0.0181 (6) | |
H1A | 0.9409 | 0.4758 | 0.1176 | 0.022* | |
C2 | 0.7184 (4) | 0.4557 (4) | −0.0597 (3) | 0.0189 (6) | |
H2A | 0.7516 | 0.5389 | −0.1053 | 0.023* | |
C3 | 0.5572 (4) | 0.3693 (4) | −0.1231 (3) | 0.0157 (6) | |
C4 | 0.5057 (4) | 0.2498 (4) | −0.0585 (3) | 0.0187 (6) | |
H4A | 0.3943 | 0.1930 | −0.1031 | 0.022* | |
C5 | 0.6194 (4) | 0.2132 (4) | 0.0734 (3) | 0.0182 (6) | |
H5A | 0.5844 | 0.1308 | 0.1188 | 0.022* | |
C6 | 0.7834 (3) | 0.2950 (3) | 0.1401 (3) | 0.0136 (6) | |
C7 | 0.9013 (3) | 0.2604 (3) | 0.2911 (3) | 0.0133 (6) | |
H7A | 0.8677 | 0.3263 | 0.3587 | 0.016* | |
C8 | 0.8816 (4) | 0.0898 (3) | 0.3211 (3) | 0.0137 (6) | |
C9 | 0.9872 (3) | −0.0158 (3) | 0.2979 (3) | 0.0110 (6) | |
C10 | 1.1955 (4) | 0.1912 (3) | 0.3081 (3) | 0.0135 (6) | |
C11 | 1.0935 (3) | 0.3048 (3) | 0.3278 (3) | 0.0141 (6) | |
C12 | 0.7568 (4) | 0.0383 (3) | 0.3743 (3) | 0.0153 (6) | |
C13 | 1.2207 (4) | −0.0783 (4) | 0.2184 (3) | 0.0200 (7) | |
H13A | 1.1391 | −0.1654 | 0.1568 | 0.030* | |
H13B | 1.3055 | −0.1210 | 0.3008 | 0.030* | |
H13C | 1.2811 | −0.0245 | 0.1657 | 0.030* | |
C14 | 1.1690 (4) | 0.4592 (4) | 0.3845 (3) | 0.0145 (6) | |
H1N2 | 1.050 (6) | −0.226 (6) | 0.345 (5) | 0.043 (12)* | |
H2N2 | 0.873 (5) | −0.220 (5) | 0.322 (4) | 0.022 (9)* | |
H1N3 | 1.414 (5) | 0.315 (6) | 0.355 (4) | 0.030 (11)* | |
H2N3 | 1.425 (5) | 0.150 (5) | 0.355 (4) | 0.029 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0168 (4) | 0.0188 (4) | 0.0178 (4) | 0.0060 (3) | 0.0030 (3) | 0.0034 (3) |
N1 | 0.0126 (11) | 0.0132 (12) | 0.0215 (12) | 0.0042 (9) | 0.0080 (10) | −0.0010 (10) |
N2 | 0.0137 (12) | 0.0082 (12) | 0.0282 (14) | 0.0055 (10) | 0.0084 (11) | 0.0015 (10) |
N3 | 0.0126 (12) | 0.0132 (13) | 0.0292 (14) | 0.0081 (11) | 0.0107 (11) | 0.0041 (11) |
N4 | 0.0145 (12) | 0.0168 (13) | 0.0261 (14) | 0.0081 (10) | 0.0090 (11) | 0.0030 (11) |
N5 | 0.0210 (13) | 0.0136 (13) | 0.0244 (13) | 0.0080 (10) | 0.0074 (11) | 0.0020 (10) |
C1 | 0.0150 (13) | 0.0141 (14) | 0.0235 (15) | 0.0024 (11) | 0.0056 (12) | −0.0009 (12) |
C2 | 0.0189 (14) | 0.0164 (15) | 0.0226 (15) | 0.0036 (12) | 0.0088 (12) | 0.0034 (12) |
C3 | 0.0175 (13) | 0.0154 (14) | 0.0153 (13) | 0.0113 (11) | 0.0058 (11) | 0.0010 (11) |
C4 | 0.0156 (13) | 0.0162 (15) | 0.0232 (15) | 0.0019 (11) | 0.0062 (12) | 0.0023 (12) |
C5 | 0.0178 (14) | 0.0135 (14) | 0.0232 (15) | 0.0020 (11) | 0.0074 (12) | 0.0048 (12) |
C6 | 0.0139 (13) | 0.0130 (14) | 0.0168 (13) | 0.0094 (11) | 0.0081 (11) | 0.0002 (11) |
C7 | 0.0117 (12) | 0.0118 (14) | 0.0173 (14) | 0.0068 (10) | 0.0057 (11) | 0.0005 (11) |
C8 | 0.0131 (12) | 0.0112 (13) | 0.0189 (14) | 0.0056 (11) | 0.0080 (11) | 0.0016 (11) |
C9 | 0.0092 (12) | 0.0084 (13) | 0.0146 (13) | 0.0072 (10) | 0.0028 (10) | −0.0003 (10) |
C10 | 0.0124 (13) | 0.0136 (14) | 0.0160 (13) | 0.0054 (11) | 0.0064 (11) | 0.0022 (11) |
C11 | 0.0129 (13) | 0.0131 (14) | 0.0174 (14) | 0.0064 (11) | 0.0065 (11) | 0.0003 (11) |
C12 | 0.0151 (13) | 0.0130 (14) | 0.0167 (14) | 0.0091 (11) | 0.0036 (11) | 0.0022 (11) |
C13 | 0.0195 (14) | 0.0142 (15) | 0.0297 (17) | 0.0075 (12) | 0.0130 (13) | −0.0041 (12) |
C14 | 0.0114 (12) | 0.0164 (15) | 0.0160 (13) | 0.0086 (11) | 0.0041 (11) | 0.0032 (11) |
Cl1—C3 | 1.753 (3) | C3—C4 | 1.372 (4) |
N1—C9 | 1.369 (4) | C4—C5 | 1.391 (4) |
N1—C10 | 1.378 (4) | C4—H4A | 0.9500 |
N1—C13 | 1.474 (4) | C5—C6 | 1.392 (4) |
N2—C9 | 1.379 (4) | C5—H5A | 0.9500 |
N2—H1N2 | 0.86 (5) | C6—C7 | 1.543 (4) |
N2—H2N2 | 0.89 (4) | C7—C8 | 1.505 (4) |
N3—C10 | 1.366 (4) | C7—C11 | 1.523 (4) |
N3—H1N3 | 0.83 (5) | C7—H7A | 1.0000 |
N3—H2N3 | 0.83 (4) | C8—C9 | 1.373 (4) |
N4—C12 | 1.155 (4) | C8—C12 | 1.410 (4) |
N5—C14 | 1.162 (4) | C10—C11 | 1.386 (4) |
C1—C6 | 1.393 (4) | C11—C14 | 1.403 (4) |
C1—C2 | 1.395 (4) | C13—H13A | 0.9800 |
C1—H1A | 0.9500 | C13—H13B | 0.9800 |
C2—C3 | 1.388 (4) | C13—H13C | 0.9800 |
C2—H2A | 0.9500 | ||
C9—N1—C10 | 118.3 (2) | C8—C7—C11 | 107.0 (2) |
C9—N1—C13 | 120.6 (2) | C8—C7—C6 | 113.9 (2) |
C10—N1—C13 | 119.7 (2) | C11—C7—C6 | 113.9 (2) |
C9—N2—H1N2 | 117 (3) | C8—C7—H7A | 107.2 |
C9—N2—H2N2 | 121 (3) | C11—C7—H7A | 107.2 |
H1N2—N2—H2N2 | 108 (4) | C6—C7—H7A | 107.2 |
C10—N3—H1N3 | 120 (3) | C9—C8—C12 | 119.9 (3) |
C10—N3—H2N3 | 113 (3) | C9—C8—C7 | 119.8 (3) |
H1N3—N3—H2N3 | 115 (4) | C12—C8—C7 | 120.3 (2) |
C6—C1—C2 | 121.3 (3) | C8—C9—N1 | 120.7 (3) |
C6—C1—H1A | 119.4 | C8—C9—N2 | 123.1 (3) |
C2—C1—H1A | 119.4 | N1—C9—N2 | 116.2 (2) |
C3—C2—C1 | 118.4 (3) | N3—C10—N1 | 116.7 (3) |
C3—C2—H2A | 120.8 | N3—C10—C11 | 123.7 (3) |
C1—C2—H2A | 120.8 | N1—C10—C11 | 119.6 (3) |
C4—C3—C2 | 121.8 (3) | C10—C11—C14 | 119.7 (3) |
C4—C3—Cl1 | 119.6 (2) | C10—C11—C7 | 119.9 (3) |
C2—C3—Cl1 | 118.5 (2) | C14—C11—C7 | 120.4 (2) |
C3—C4—C5 | 118.9 (3) | N4—C12—C8 | 178.0 (3) |
C3—C4—H4A | 120.5 | N1—C13—H13A | 109.5 |
C5—C4—H4A | 120.5 | N1—C13—H13B | 109.5 |
C4—C5—C6 | 121.3 (3) | H13A—C13—H13B | 109.5 |
C4—C5—H5A | 119.3 | N1—C13—H13C | 109.5 |
C6—C5—H5A | 119.3 | H13A—C13—H13C | 109.5 |
C1—C6—C5 | 118.2 (3) | H13B—C13—H13C | 109.5 |
C1—C6—C7 | 121.4 (3) | N5—C14—C11 | 177.8 (3) |
C5—C6—C7 | 120.1 (3) | ||
C6—C1—C2—C3 | 0.3 (5) | C7—C8—C9—N1 | 8.9 (4) |
C1—C2—C3—C4 | 0.7 (5) | C12—C8—C9—N2 | 10.8 (4) |
C1—C2—C3—Cl1 | −180.0 (2) | C7—C8—C9—N2 | −169.8 (3) |
C2—C3—C4—C5 | −0.8 (5) | C10—N1—C9—C8 | 23.8 (4) |
Cl1—C3—C4—C5 | 179.9 (2) | C13—N1—C9—C8 | −169.9 (3) |
C3—C4—C5—C6 | −0.2 (5) | C10—N1—C9—N2 | −157.4 (3) |
C2—C1—C6—C5 | −1.3 (4) | C13—N1—C9—N2 | 8.9 (4) |
C2—C1—C6—C7 | −175.4 (3) | C9—N1—C10—N3 | 156.2 (3) |
C4—C5—C6—C1 | 1.2 (4) | C13—N1—C10—N3 | −10.2 (4) |
C4—C5—C6—C7 | 175.4 (3) | C9—N1—C10—C11 | −25.5 (4) |
C1—C6—C7—C8 | −152.0 (3) | C13—N1—C10—C11 | 168.1 (3) |
C5—C6—C7—C8 | 34.0 (3) | N3—C10—C11—C14 | −8.3 (4) |
C1—C6—C7—C11 | −28.9 (4) | N1—C10—C11—C14 | 173.5 (3) |
C5—C6—C7—C11 | 157.1 (3) | N3—C10—C11—C7 | 173.1 (3) |
C11—C7—C8—C9 | −34.8 (3) | N1—C10—C11—C7 | −5.1 (4) |
C6—C7—C8—C9 | 92.0 (3) | C8—C7—C11—C10 | 32.9 (4) |
C11—C7—C8—C12 | 144.5 (3) | C6—C7—C11—C10 | −93.9 (3) |
C6—C7—C8—C12 | −88.7 (3) | C8—C7—C11—C14 | −145.7 (3) |
C12—C8—C9—N1 | −170.4 (3) | C6—C7—C11—C14 | 87.6 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···N5i | 0.86 (5) | 2.21 (5) | 3.043 (4) | 163 (5) |
N2—H2N2···Cl1ii | 0.89 (4) | 2.75 (4) | 3.588 (3) | 158 (3) |
N3—H2N3···N4iii | 0.83 (4) | 2.27 (4) | 3.071 (4) | 161 (4) |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, −y, −z; (iii) x+1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···N5i | 0.86 (5) | 2.21 (5) | 3.043 (4) | 163 (5) |
N2—H2N2···Cl1ii | 0.89 (4) | 2.75 (4) | 3.588 (3) | 158 (3) |
N3—H2N3···N4iii | 0.83 (4) | 2.27 (4) | 3.071 (4) | 161 (4) |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, −y, −z; (iii) x+1, y, z. |
Footnotes
‡Thomson Reuters ResearcherID: A-5599-2009.
Acknowledgements
KT and IAR thank the Malaysian Government and Universiti Sains Malaysia (USM) for the research facilities and USM Short Term Grant, No. 304/PFIZIK/6312078. MP, SS and KMSA thank the Management and the Principal, Jamal Mohamed College (Autonomous), for providing research facilities. MP thanks the UGC–SERO, Hyderabad, for a minor research project. KT thanks The Academy of Sciences for the Developing World and USM for the TWAS–USM fellowship.
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Malononitrile is a simple and versatile reagent for the synthesis of heterocyclic compounds and precursors of novel compounds. It exhibits a unique reactivity due to the strong electron withdrawing cycano groups to activate the methylene group and the polar multiple bond suitable for nucleophilic addition (Fatiadi, 1978). Malononitrile is used as reactant or reaction intermediate in various multicomponent reactions to prepare heterocyclic compounds. The three component reactions of malononitrile, aldehyde and amine show very chemical diversity, from which several kinds of products were separated (Raghukumar et al., 2003). The crystal structure of the title compound (I) is presented here.
The molecular structure of the title compound is shown in Fig. 1. The pyridine ring (N1/C7—C11) adopts a boat conformation with puckering parameters Q= 0.402 (3) Å, Θ= 79.6 (4)° and Φ= 177.2 (4)°. The dihedral angle between the pyridine (N1/C7—C11) and benzene (C1—C6) rings is 69.15 (15) °.
The crystal structure shown in Fig. 2 features N2—H1N2···N5i and N3—H2N3···N4iii hydrogen bonds (symmetry code in Table 1) to result in tetrameric association of molecules, generated by inversion. These tetramers are then connected via N2—H2N2···Cl1ii hydrogen bond (symmetry code in Table 1), forming a layer parallel to the ab plane.