Experimental
Crystal data
[Zn(C3H3N2)(C3H4N2)2]NO3 Mr = 330.62 Monoclinic, P 21 /c a = 12.1812 (10) Å b = 10.0713 (7) Å c = 11.3628 (10) Å β = 91.011 (8)° V = 1393.78 (19) Å3 Z = 4 Mo Kα radiation μ = 1.78 mm−1 T = 293 K 0.45 × 0.35 × 0.35 mm
|
Data collection
Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ) Tmin = 0.478, Tmax = 0.536 7564 measured reflections 3132 independent reflections 2419 reflections with I > 2σ(I) Rint = 0.025
|
Zn1—N6 | 1.9871 (18) | Zn1—N1 | 1.990 (2) | Zn1—N3 | 1.994 (2) | Zn1—N5 | 1.9954 (19) | | |
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A | N2—H2N⋯O1i | 0.92 (3) | 1.92 (3) | 2.809 (3) | 162 (3) | N4—H4N⋯O1ii | 0.87 (2) | 1.99 (3) | 2.826 (3) | 161 (3) | N4—H4N⋯O3ii | 0.87 (2) | 2.52 (3) | 3.074 (3) | 122 (2) | C2—H2⋯O3iii | 0.93 | 2.37 | 3.289 (4) | 172 | C4—H4⋯O3 | 0.93 | 2.55 | 3.283 (4) | 135 | C7—H7⋯Cg1iv | 0.93 | 2.88 | 3.587 (4) | 133 | Symmetry codes: (i) -x, -y+1, -z+1; (ii) ; (iii) ; (iv) . | |
Data collection: CrysAlis CCD (Oxford Diffraction, 2009
); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2009
); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008
); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008
); molecular graphics: PLATON (Spek, 2009
); software used to prepare material for publication: SHELXL2013 and PLATON (Spek, 2009
).
Supporting information
The title compound was synthesized following a published procedure (Anbalagan & Lydia, 2011). To an ethanol solution (30 ml) of imidazole (1.0 g, 4.2 mmol) was added an ethanol solution of Zn(NO3)2.6H2O (0.32 g, 1.1 mmol) and the mixture was stirred for 30 min at room temperature. The solvent was removed under vacuum. The white powder obtained was washed several times with water and ether. The final product was dissolved in 5–10 ml of ethanol and allowed to crystallize in a desiccator containing P2O5 for 4 days. Colourless crystals were obtained [yield > 90%], which were filtered, washed with cold ethanol and dried under vacuum.
NH H atoms were located in a difference Fourier map and refined with distance restraints: N-H = 0.88 (2) Å with Uiso(H) = 1.2Ueq(N). The C-bound H atoms were positioned geometrically and allowed to ride on their parent atoms: C–H = 0.93 Å with Uiso(H) = 1.2Ueq(C).
Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell refinement: CrysAlis CCD (Oxford Diffraction, 2009); data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL2013 (Sheldrick, 2008) and PLATON (Spek, 2009).
catena-Poly[[[bis(1
H-imidazole-
κN3)zinc(II)]-µ
2-imidazol-1-ido-
κ2N:
N'] nitrate]
top Crystal data top [Zn(C3H3N2)(C3H4N2)2]NO3 | F(000) = 672 |
Mr = 330.62 | Dx = 1.576 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 12.1812 (10) Å | Cell parameters from 1994 reflections |
b = 10.0713 (7) Å | θ = 3.9–25.0° |
c = 11.3628 (10) Å | µ = 1.78 mm−1 |
β = 91.011 (8)° | T = 293 K |
V = 1393.78 (19) Å3 | Block, pink |
Z = 4 | 0.45 × 0.35 × 0.35 mm |
Data collection top Oxford Diffraction Xcalibur Eos diffractometer | 3132 independent reflections |
Radiation source: fine-focus sealed tube | 2419 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
ω scans | θmax = 29.1°, θmin = 3.9° |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | h = −16→16 |
Tmin = 0.478, Tmax = 0.536 | k = −13→13 |
7564 measured reflections | l = −13→15 |
Refinement top Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.083 | w = 1/[σ2(Fo2) + (0.0384P)2 + 0.2989P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
3132 reflections | Δρmax = 0.26 e Å−3 |
188 parameters | Δρmin = −0.30 e Å−3 |
2 restraints | Extinction correction: SHELXL2013 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0081 (9) |
Crystal data top [Zn(C3H3N2)(C3H4N2)2]NO3 | V = 1393.78 (19) Å3 |
Mr = 330.62 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.1812 (10) Å | µ = 1.78 mm−1 |
b = 10.0713 (7) Å | T = 293 K |
c = 11.3628 (10) Å | 0.45 × 0.35 × 0.35 mm |
β = 91.011 (8)° | |
Data collection top Oxford Diffraction Xcalibur Eos diffractometer | 3132 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2419 reflections with I > 2σ(I) |
Tmin = 0.478, Tmax = 0.536 | Rint = 0.025 |
7564 measured reflections | |
Refinement top R[F2 > 2σ(F2)] = 0.033 | 2 restraints |
wR(F2) = 0.083 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.26 e Å−3 |
3132 reflections | Δρmin = −0.30 e Å−3 |
188 parameters | |
Special details top Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Zn1 | 0.36252 (2) | 0.46682 (2) | 0.22841 (2) | 0.03923 (12) | |
N1 | 0.25332 (15) | 0.47069 (19) | 0.35663 (18) | 0.0432 (5) | |
N2 | 0.13625 (19) | 0.4040 (3) | 0.4868 (2) | 0.0660 (7) | |
H2N | 0.087 (2) | 0.347 (3) | 0.521 (3) | 0.079* | |
N3 | 0.28898 (17) | 0.5089 (2) | 0.07477 (18) | 0.0453 (5) | |
N4 | 0.1623 (2) | 0.5621 (2) | −0.0543 (2) | 0.0629 (6) | |
H4N | 0.0994 (18) | 0.591 (3) | −0.081 (3) | 0.075* | |
N5 | 0.42417 (16) | 0.28445 (18) | 0.21108 (18) | 0.0445 (5) | |
N6 | 0.47785 (15) | 0.59804 (18) | 0.27271 (17) | 0.0417 (4) | |
C1 | 0.1922 (2) | 0.3708 (3) | 0.3939 (2) | 0.0542 (7) | |
H1 | 0.1894 | 0.2875 | 0.3585 | 0.065* | |
C2 | 0.1596 (2) | 0.5311 (4) | 0.5132 (3) | 0.0699 (9) | |
H2 | 0.1314 | 0.5802 | 0.5750 | 0.084* | |
C3 | 0.2327 (2) | 0.5742 (3) | 0.4320 (3) | 0.0591 (7) | |
H3 | 0.2632 | 0.6587 | 0.4282 | 0.071* | |
C4 | 0.1872 (2) | 0.5504 (3) | 0.0592 (3) | 0.0547 (7) | |
H4 | 0.1392 | 0.5689 | 0.1198 | 0.066* | |
C5 | 0.2504 (3) | 0.5270 (3) | −0.1158 (3) | 0.0730 (9) | |
H5 | 0.2564 | 0.5264 | −0.1973 | 0.088* | |
C6 | 0.3286 (3) | 0.4929 (3) | −0.0364 (3) | 0.0642 (8) | |
H6 | 0.3986 | 0.4632 | −0.0542 | 0.077* | |
C7 | 0.3839 (3) | 0.1932 (3) | 0.1340 (3) | 0.0754 (10) | |
H7 | 0.3248 | 0.2063 | 0.0824 | 0.090* | |
C8 | 0.50637 (19) | 0.2215 (2) | 0.2642 (2) | 0.0445 (6) | |
H8 | 0.5497 | 0.2606 | 0.3227 | 0.053* | |
C9 | 0.5567 (3) | 0.5799 (3) | 0.3560 (3) | 0.0733 (10) | |
H9 | 0.5684 | 0.5026 | 0.3993 | 0.088* | |
O1 | −0.02383 (16) | 0.7857 (2) | 0.38003 (18) | 0.0670 (5) | |
O2 | −0.0378 (2) | 0.6253 (3) | 0.2556 (2) | 0.0974 (8) | |
O3 | 0.0817 (2) | 0.7775 (2) | 0.23084 (19) | 0.0834 (7) | |
N7 | 0.00643 (19) | 0.7290 (2) | 0.2867 (2) | 0.0568 (6) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Zn1 | 0.04116 (18) | 0.03470 (16) | 0.04196 (18) | 0.00129 (11) | 0.00404 (12) | −0.00016 (11) |
N1 | 0.0413 (11) | 0.0480 (11) | 0.0405 (11) | 0.0025 (9) | 0.0064 (9) | 0.0014 (9) |
N2 | 0.0451 (13) | 0.097 (2) | 0.0562 (16) | −0.0008 (13) | 0.0111 (12) | 0.0142 (15) |
N3 | 0.0462 (11) | 0.0477 (11) | 0.0420 (12) | 0.0069 (9) | 0.0037 (9) | 0.0008 (9) |
N4 | 0.0626 (16) | 0.0636 (15) | 0.0620 (16) | 0.0042 (12) | −0.0114 (14) | 0.0139 (12) |
N5 | 0.0454 (11) | 0.0360 (10) | 0.0520 (12) | 0.0020 (8) | −0.0039 (10) | −0.0049 (9) |
N6 | 0.0455 (11) | 0.0358 (9) | 0.0436 (11) | −0.0035 (8) | 0.0004 (9) | 0.0027 (9) |
C1 | 0.0436 (14) | 0.0641 (16) | 0.0549 (16) | −0.0020 (12) | 0.0030 (13) | 0.0091 (13) |
C2 | 0.0556 (17) | 0.108 (3) | 0.0462 (17) | 0.0285 (17) | 0.0086 (14) | −0.0098 (17) |
C3 | 0.0615 (17) | 0.0609 (16) | 0.0552 (17) | 0.0117 (13) | 0.0055 (14) | −0.0091 (14) |
C4 | 0.0530 (16) | 0.0567 (16) | 0.0544 (17) | 0.0098 (12) | 0.0033 (13) | 0.0038 (13) |
C5 | 0.096 (3) | 0.082 (2) | 0.0402 (16) | 0.0060 (19) | −0.0029 (17) | 0.0034 (15) |
C6 | 0.0610 (17) | 0.081 (2) | 0.0515 (17) | 0.0143 (14) | 0.0134 (15) | −0.0019 (14) |
C7 | 0.085 (2) | 0.0483 (15) | 0.091 (2) | 0.0114 (14) | −0.0504 (19) | −0.0149 (16) |
C8 | 0.0456 (13) | 0.0385 (12) | 0.0492 (14) | 0.0000 (10) | −0.0062 (11) | −0.0063 (11) |
C9 | 0.097 (2) | 0.0430 (14) | 0.078 (2) | −0.0117 (15) | −0.0373 (19) | 0.0206 (15) |
O1 | 0.0679 (12) | 0.0734 (13) | 0.0602 (12) | −0.0107 (10) | 0.0150 (10) | −0.0139 (11) |
O2 | 0.117 (2) | 0.0852 (17) | 0.0903 (18) | −0.0450 (15) | 0.0065 (15) | −0.0264 (14) |
O3 | 0.1114 (17) | 0.0825 (15) | 0.0574 (13) | −0.0286 (14) | 0.0313 (13) | 0.0009 (12) |
N7 | 0.0637 (14) | 0.0596 (14) | 0.0469 (12) | −0.0080 (12) | −0.0052 (12) | 0.0048 (11) |
Geometric parameters (Å, º) top Zn1—N6 | 1.9871 (18) | C1—H1 | 0.9300 |
Zn1—N1 | 1.990 (2) | C2—C3 | 1.364 (4) |
Zn1—N3 | 1.994 (2) | C2—H2 | 0.9300 |
Zn1—N5 | 1.9954 (19) | C3—H3 | 0.9300 |
N1—C1 | 1.325 (3) | C4—H4 | 0.9300 |
N1—C3 | 1.375 (3) | C5—C6 | 1.345 (4) |
N2—C1 | 1.310 (4) | C5—H5 | 0.9300 |
N2—C2 | 1.344 (4) | C6—H6 | 0.9300 |
N2—H2N | 0.915 (18) | C7—C9ii | 1.355 (4) |
N3—C4 | 1.317 (3) | C7—H7 | 0.9300 |
N3—C6 | 1.369 (3) | C8—N6ii | 1.327 (3) |
N4—C4 | 1.325 (4) | C8—H8 | 0.9300 |
N4—C5 | 1.339 (4) | C9—C7i | 1.355 (4) |
N4—H4N | 0.872 (17) | C9—H9 | 0.9300 |
N5—C8 | 1.322 (3) | O1—N7 | 1.265 (3) |
N5—C7 | 1.355 (3) | O2—N7 | 1.224 (3) |
N6—C8i | 1.327 (3) | O3—N7 | 1.226 (3) |
N6—C9 | 1.349 (3) | | |
| | | |
N6—Zn1—N1 | 106.27 (8) | N2—C2—C3 | 106.9 (3) |
N6—Zn1—N3 | 112.65 (8) | N2—C2—H2 | 126.6 |
N1—Zn1—N3 | 109.94 (8) | C3—C2—H2 | 126.6 |
N6—Zn1—N5 | 111.81 (8) | C2—C3—N1 | 108.0 (3) |
N1—Zn1—N5 | 110.35 (8) | C2—C3—H3 | 126.0 |
N3—Zn1—N5 | 105.86 (8) | N1—C3—H3 | 126.0 |
C1—N1—C3 | 105.5 (2) | N3—C4—N4 | 111.0 (3) |
C1—N1—Zn1 | 127.24 (18) | N3—C4—H4 | 124.5 |
C3—N1—Zn1 | 127.06 (19) | N4—C4—H4 | 124.5 |
C1—N2—C2 | 108.1 (3) | N4—C5—C6 | 106.3 (3) |
C1—N2—H2N | 122 (2) | N4—C5—H5 | 126.8 |
C2—N2—H2N | 130 (2) | C6—C5—H5 | 126.8 |
C4—N3—C6 | 105.0 (2) | C5—C6—N3 | 109.4 (3) |
C4—N3—Zn1 | 126.31 (19) | C5—C6—H6 | 125.3 |
C6—N3—Zn1 | 128.51 (18) | N3—C6—H6 | 125.3 |
C4—N4—C5 | 108.2 (3) | N5—C7—C9ii | 109.3 (2) |
C4—N4—H4N | 124 (2) | N5—C7—H7 | 125.3 |
C5—N4—H4N | 128 (2) | C9ii—C7—H7 | 125.3 |
C8—N5—C7 | 103.4 (2) | N5—C8—N6ii | 114.7 (2) |
C8—N5—Zn1 | 132.85 (15) | N5—C8—H8 | 122.6 |
C7—N5—Zn1 | 123.74 (16) | N6ii—C8—H8 | 122.6 |
C8i—N6—C9 | 104.1 (2) | N6—C9—C7i | 108.5 (2) |
C8i—N6—Zn1 | 130.45 (16) | N6—C9—H9 | 125.8 |
C9—N6—Zn1 | 125.38 (17) | C7i—C9—H9 | 125.8 |
N2—C1—N1 | 111.5 (3) | O2—N7—O3 | 121.4 (3) |
N2—C1—H1 | 124.2 | O2—N7—O1 | 119.6 (2) |
N1—C1—H1 | 124.2 | O3—N7—O1 | 119.1 (2) |
| | | |
C2—N2—C1—N1 | 0.4 (3) | C4—N4—C5—C6 | 0.5 (4) |
C3—N1—C1—N2 | −0.6 (3) | N4—C5—C6—N3 | −0.9 (4) |
Zn1—N1—C1—N2 | 174.19 (16) | C4—N3—C6—C5 | 0.9 (3) |
C1—N2—C2—C3 | −0.1 (3) | Zn1—N3—C6—C5 | 176.7 (2) |
N2—C2—C3—N1 | −0.3 (3) | C8—N5—C7—C9ii | 0.0 (4) |
C1—N1—C3—C2 | 0.5 (3) | Zn1—N5—C7—C9ii | −179.8 (2) |
Zn1—N1—C3—C2 | −174.26 (18) | C7—N5—C8—N6ii | 0.2 (3) |
C6—N3—C4—N4 | −0.6 (3) | Zn1—N5—C8—N6ii | 179.99 (17) |
Zn1—N3—C4—N4 | −176.58 (18) | C8i—N6—C9—C7i | 0.3 (4) |
C5—N4—C4—N3 | 0.1 (3) | Zn1—N6—C9—C7i | −176.6 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+1, y−1/2, −z+1/2. |
Hydrogen-bond geometry (Å, º) topCg1 is the centroid of the N1/N2/C1–C3 imidazole ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1iii | 0.92 (3) | 1.92 (3) | 2.809 (3) | 162 (3) |
N4—H4N···O1iv | 0.87 (2) | 1.99 (3) | 2.826 (3) | 161 (3) |
N4—H4N···O3iv | 0.87 (2) | 2.52 (3) | 3.074 (3) | 122 (2) |
C2—H2···O3v | 0.93 | 2.37 | 3.289 (4) | 172 |
C4—H4···O3 | 0.93 | 2.55 | 3.283 (4) | 135 |
C7—H7···Cg1vi | 0.93 | 2.88 | 3.587 (4) | 133 |
Symmetry codes: (iii) −x, −y+1, −z+1; (iv) x, −y+3/2, z−1/2; (v) x, −y+3/2, z+1/2; (vi) x, −y−1/2, z−3/2. |
Selected bond lengths (Å) topZn1—N6 | 1.9871 (18) | Zn1—N3 | 1.994 (2) |
Zn1—N1 | 1.990 (2) | Zn1—N5 | 1.9954 (19) |
Hydrogen-bond geometry (Å, º) topCg1 is the centroid of the N1/N2/C1–C3 imidazole ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1i | 0.92 (3) | 1.92 (3) | 2.809 (3) | 162 (3) |
N4—H4N···O1ii | 0.87 (2) | 1.99 (3) | 2.826 (3) | 161 (3) |
N4—H4N···O3ii | 0.87 (2) | 2.52 (3) | 3.074 (3) | 122 (2) |
C2—H2···O3iii | 0.93 | 2.37 | 3.289 (4) | 172 |
C4—H4···O3 | 0.93 | 2.55 | 3.283 (4) | 135 |
C7—H7···Cg1iv | 0.93 | 2.88 | 3.587 (4) | 133 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x, −y+3/2, z−1/2; (iii) x, −y+3/2, z+1/2; (iv) x, −y−1/2, z−3/2. |
Acknowledgements
EG and KA thank the CSIR, New Delhi (Lr: No. 01 (2570)/12/EMR-II/3.4.2012) for financial support through a major research project. The authors are grateful to the Department of Chemistry, Pondicherry University, for access to the single-crystal XRD facilities.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
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Imidazoles are of considerable interest as ligands in many biological systems as they provide potential binding sites for metal ions (Brooks & Davidson, 1960). Against this background and to ascertain the molecular structure and conformation of the title compound, the crystal structure determination has been carried out.
The molecular structure of the title compound is shown in Fig. 1. Atom Zn1 has a regular tetrahedral geometry and the bond lengths (Allen et al., 1987) and angles are normal. It is a one-dimensional zigzag polymer with atom Zn1 coordinating to four imidazole units. This structure is similar to that observed for the compound catena-(bis(µ2-Imidazole)-tetrakis(1H-imidazole)-di-ZnII 4,4'-bis(2-sulfonatostyryl)biphenyl) [Fu et al., 2007]. Two of the imidazole units are related by a two-fold screw axis and bridge the zinc atoms. The Zn-N bond distances vary from 1.9871 (18) to 1.9954 (19) Å, while the N-Zn-N bond angles vary from 105.86 (2) to 112.65 (8) °. The two monodentate coordinated imidazole rings [N1/N2/C1-C3 and N3/N4/C4-C6] are inclined to one another by 87.94 (17) °, while the bridging imidazole rings [N5/N6i/C9/C7i/C8i and N5ii/N6/C7ii/C8ii/C9] are inclined to one another by 39.06 (17) ° [symmetry codes: (i) -x+1, y+1/2, -z+1/2; (ii) -x+1, y-1/2, -z+1/2].
In the crystal, the chains are linked via bifurcated N—H···O/O hydrogen bonds forming sheets parallel to (001); (Table 1 and Fig. 2). These two-dimensional networks are linked via C-H···O hydrogen bonds and a C-H···π interaction forming a three-dimensional structure.