organic compounds
Di-tert-butyl 1-[2-hydroxy-3-(methylsulfanyl)propyl]hydrazine-1,2-dicarboxylate
aInstitute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China, and bHangDeXin (Beijing) Pharmatech. Co. Ltd, Fengtai District, Beijing 100050, People's Republic of China
*Correspondence e-mail: imbjxwang@gmail.com
The title compound, C14H28N2O5S, was synthesized by the reaction of 2-[(methylsulfanyl)methyl]oxirane with di-tert-butyl oxalate in hydrazine hydrate. In the crystal, molecules are linked by N—H⋯O and O—H⋯O hydrogen bonds into supramolecular chains propagating along the b-axis direction.
Keywords: crystal structure.
CCDC reference: 1010387
Related literature
For the synthesis of the title compound, see: Budavari et al. (1989); Mendling et al. (2002).
Experimental
Crystal data
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Data collection: CrysAlis PRO (Agilent, 2013); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC.
Supporting information
CCDC reference: 1010387
10.1107/S1600536814015062/xu5797sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814015062/xu5797Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814015062/xu5797Isup3.cml
In a 500 ml four-necked round-bottom flask equipped with a mechanical stirrer 2-((methylsulfanyl)methyl)oxirane (55.8 g) was cautiously dissolved in 80% hydrazine hydrate (17.5 g). The solution was heated at 95°C for 6 h, then the hydrazine hydrate was removed by reduced pressure distillation at 85°C. 125 ml me thanol and Boc2O was added into the remaining aqueous phase group by group. The reaction was completion after 2 h, the crude product were obtained. The crude product was purified by
to obtain 44.3 g (78.8%) of product which was recrystallized from 200 ml of a mixture of methanol and acetone (v/v = 1/2) to yield 25.3 g (57%) of clear light colourless block-like crystals.H atoms were placed in calculated positions and refined constrained to ride on their parent atoms, with C—H = 0.96—0.97 Å, N—H = 0.93 Å and O—H = 0.82, Uiso(H) = 1.5Ueq(C,O) for methyl and hydroxyl H atoms and 1.2Ueq(C,N) for the others.
Data collection: CrysAlis PRO (Agilent, 2013); cell
CrysAlis PRO (Agilent, 2013); data reduction: CrysAlis PRO (Agilent, 2013); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC (Sheldrick, 2008).C14H28N2O5S | F(000) = 728 |
Mr = 336.44 | Dx = 1.217 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: -P 2ybc | Cell parameters from 7294 reflections |
a = 14.0172 (3) Å | θ = 5.3–66.4° |
b = 7.83649 (15) Å | µ = 1.77 mm−1 |
c = 17.2076 (3) Å | T = 293 K |
β = 103.772 (2)° | Block, colourless |
V = 1835.84 (7) Å3 | 0.28 × 0.24 × 0.24 mm |
Z = 4 |
Agilent Xcalibur (Atlas, Gemini ultra) diffractometer | 3247 independent reflections |
Radiation source: fine-focus sealed tube | 2903 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
ω scans | θmax = 66.6°, θmin = 3.3° |
Absorption correction: multi-scan (CrysAlis PRO, Agilent, 2013) | h = −16→16 |
Tmin = 0.551, Tmax = 0.680 | k = −9→7 |
16825 measured reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.063 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.187 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.1098P)2 + 1.6106P] where P = (Fo2 + 2Fc2)/3 |
3247 reflections | (Δ/σ)max < 0.001 |
207 parameters | Δρmax = 1.02 e Å−3 |
0 restraints | Δρmin = −0.66 e Å−3 |
C14H28N2O5S | V = 1835.84 (7) Å3 |
Mr = 336.44 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 14.0172 (3) Å | µ = 1.77 mm−1 |
b = 7.83649 (15) Å | T = 293 K |
c = 17.2076 (3) Å | 0.28 × 0.24 × 0.24 mm |
β = 103.772 (2)° |
Agilent Xcalibur (Atlas, Gemini ultra) diffractometer | 3247 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO, Agilent, 2013) | 2903 reflections with I > 2σ(I) |
Tmin = 0.551, Tmax = 0.680 | Rint = 0.028 |
16825 measured reflections |
R[F2 > 2σ(F2)] = 0.063 | 0 restraints |
wR(F2) = 0.187 | H-atom parameters constrained |
S = 1.00 | Δρmax = 1.02 e Å−3 |
3247 reflections | Δρmin = −0.66 e Å−3 |
207 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.8328 (2) | 0.0844 (4) | 0.2221 (2) | 0.0607 (8) | |
H1A | 0.8060 | 0.0494 | 0.2660 | 0.091* | |
H1B | 0.8898 | 0.0169 | 0.2216 | 0.091* | |
H1C | 0.7845 | 0.0688 | 0.1728 | 0.091* | |
C2 | 0.86149 (18) | 0.2704 (3) | 0.23178 (17) | 0.0442 (6) | |
C3 | 0.8960 (3) | 0.3336 (4) | 0.1599 (2) | 0.0654 (9) | |
H3A | 0.8445 | 0.3187 | 0.1125 | 0.098* | |
H3B | 0.9527 | 0.2697 | 0.1551 | 0.098* | |
H3C | 0.9127 | 0.4523 | 0.1667 | 0.098* | |
C4 | 0.9360 (2) | 0.3034 (4) | 0.3097 (2) | 0.0661 (8) | |
H4A | 0.9505 | 0.4232 | 0.3147 | 0.099* | |
H4B | 0.9951 | 0.2410 | 0.3102 | 0.099* | |
H4C | 0.9097 | 0.2670 | 0.3536 | 0.099* | |
C5 | 0.75898 (17) | 0.5211 (3) | 0.24304 (13) | 0.0377 (5) | |
C6 | 0.8608 (3) | 0.5688 (5) | 0.4950 (2) | 0.0734 (10) | |
H6A | 0.8161 | 0.4772 | 0.4973 | 0.110* | |
H6B | 0.9031 | 0.5863 | 0.5471 | 0.110* | |
H6C | 0.8996 | 0.5405 | 0.4578 | 0.110* | |
C7 | 0.8696 (3) | 0.8736 (6) | 0.4540 (2) | 0.0829 (12) | |
H7A | 0.8977 | 0.8445 | 0.4100 | 0.124* | |
H7B | 0.9212 | 0.8901 | 0.5013 | 0.124* | |
H7C | 0.8322 | 0.9769 | 0.4418 | 0.124* | |
C8 | 0.7408 (3) | 0.7799 (5) | 0.52474 (19) | 0.0717 (9) | |
H8A | 0.7031 | 0.8797 | 0.5050 | 0.107* | |
H8B | 0.7824 | 0.8035 | 0.5766 | 0.107* | |
H8C | 0.6972 | 0.6876 | 0.5288 | 0.107* | |
C9 | 0.8032 (2) | 0.7309 (4) | 0.46795 (15) | 0.0502 (7) | |
C10 | 0.68395 (18) | 0.7871 (3) | 0.34172 (15) | 0.0398 (6) | |
C11 | 0.59483 (19) | 0.8209 (3) | 0.20202 (15) | 0.0420 (6) | |
H11A | 0.6411 | 0.8357 | 0.1687 | 0.050* | |
H11B | 0.5821 | 0.9327 | 0.2217 | 0.050* | |
C12 | 0.50032 (19) | 0.7509 (3) | 0.15139 (15) | 0.0414 (6) | |
H12 | 0.5117 | 0.6371 | 0.1318 | 0.050* | |
C13 | 0.4655 (2) | 0.8726 (4) | 0.08046 (17) | 0.0540 (7) | |
H13A | 0.5206 | 0.8962 | 0.0571 | 0.065* | |
H13B | 0.4464 | 0.9797 | 0.1007 | 0.065* | |
C14 | 0.4265 (4) | 0.6873 (6) | −0.0605 (3) | 0.1003 (15) | |
H14A | 0.4392 | 0.7640 | −0.1004 | 0.150* | |
H14B | 0.3861 | 0.5948 | −0.0862 | 0.150* | |
H14C | 0.4875 | 0.6430 | −0.0294 | 0.150* | |
N1 | 0.63988 (15) | 0.7134 (3) | 0.27015 (12) | 0.0406 (5) | |
N2 | 0.66615 (14) | 0.5497 (2) | 0.25167 (12) | 0.0384 (5) | |
H2 | 0.6317 | 0.4615 | 0.2686 | 0.046* | |
O1 | 0.73806 (14) | 0.6746 (2) | 0.39125 (10) | 0.0453 (4) | |
O2 | 0.67196 (16) | 0.9354 (2) | 0.35674 (12) | 0.0576 (5) | |
O3 | 0.76770 (12) | 0.3515 (2) | 0.23478 (12) | 0.0450 (5) | |
O4 | 0.81944 (14) | 0.6293 (2) | 0.24135 (12) | 0.0512 (5) | |
O5 | 0.43100 (14) | 0.7407 (2) | 0.19925 (12) | 0.0496 (5) | |
H5 | 0.3943 | 0.6593 | 0.1847 | 0.074* | |
S1 | 0.36497 (6) | 0.79803 (14) | 0.00276 (5) | 0.0743 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0588 (17) | 0.0400 (15) | 0.087 (2) | 0.0079 (13) | 0.0240 (16) | −0.0047 (14) |
C2 | 0.0374 (13) | 0.0403 (13) | 0.0560 (15) | 0.0054 (10) | 0.0135 (11) | −0.0014 (11) |
C3 | 0.071 (2) | 0.0624 (19) | 0.074 (2) | −0.0013 (16) | 0.0392 (17) | −0.0057 (16) |
C4 | 0.0560 (18) | 0.0638 (19) | 0.070 (2) | 0.0053 (15) | −0.0009 (15) | −0.0018 (16) |
C5 | 0.0417 (12) | 0.0355 (12) | 0.0348 (11) | 0.0021 (10) | 0.0067 (9) | −0.0013 (9) |
C6 | 0.064 (2) | 0.090 (3) | 0.0553 (18) | 0.0143 (18) | −0.0082 (15) | 0.0067 (17) |
C7 | 0.067 (2) | 0.107 (3) | 0.069 (2) | −0.031 (2) | 0.0045 (17) | 0.004 (2) |
C8 | 0.080 (2) | 0.091 (3) | 0.0456 (16) | −0.0027 (19) | 0.0186 (16) | −0.0128 (16) |
C9 | 0.0487 (15) | 0.0645 (17) | 0.0341 (12) | −0.0049 (13) | 0.0035 (11) | −0.0017 (12) |
C10 | 0.0408 (13) | 0.0408 (13) | 0.0373 (12) | 0.0047 (10) | 0.0082 (10) | −0.0009 (10) |
C11 | 0.0430 (13) | 0.0410 (13) | 0.0401 (13) | 0.0039 (10) | 0.0061 (10) | 0.0035 (10) |
C12 | 0.0443 (13) | 0.0371 (12) | 0.0403 (13) | 0.0057 (10) | 0.0052 (10) | −0.0052 (10) |
C13 | 0.0579 (16) | 0.0540 (16) | 0.0456 (15) | 0.0029 (13) | 0.0033 (12) | 0.0047 (12) |
C14 | 0.117 (4) | 0.084 (3) | 0.086 (3) | 0.005 (3) | −0.002 (3) | −0.030 (2) |
N1 | 0.0432 (11) | 0.0360 (10) | 0.0387 (11) | 0.0087 (9) | 0.0022 (9) | −0.0041 (8) |
N2 | 0.0381 (10) | 0.0326 (10) | 0.0431 (11) | 0.0030 (8) | 0.0069 (8) | −0.0029 (8) |
O1 | 0.0509 (10) | 0.0440 (10) | 0.0360 (9) | 0.0060 (8) | 0.0003 (7) | −0.0027 (7) |
O2 | 0.0774 (14) | 0.0407 (11) | 0.0497 (11) | 0.0110 (9) | 0.0048 (9) | −0.0083 (8) |
O3 | 0.0373 (9) | 0.0340 (9) | 0.0655 (11) | −0.0004 (7) | 0.0156 (8) | −0.0049 (8) |
O4 | 0.0518 (11) | 0.0389 (10) | 0.0658 (12) | −0.0061 (8) | 0.0198 (9) | −0.0010 (8) |
O5 | 0.0466 (10) | 0.0450 (10) | 0.0570 (11) | −0.0068 (8) | 0.0119 (9) | −0.0017 (8) |
S1 | 0.0590 (5) | 0.0937 (7) | 0.0592 (5) | 0.0013 (4) | −0.0082 (4) | 0.0056 (4) |
C1—C2 | 1.510 (4) | C8—H8A | 0.9600 |
C1—H1A | 0.9600 | C8—H8B | 0.9600 |
C1—H1B | 0.9600 | C8—H8C | 0.9600 |
C1—H1C | 0.9600 | C9—O1 | 1.482 (3) |
C2—O3 | 1.472 (3) | C10—O2 | 1.210 (3) |
C2—C4 | 1.513 (4) | C10—O1 | 1.331 (3) |
C2—C3 | 1.514 (4) | C10—N1 | 1.367 (3) |
C3—H3A | 0.9600 | C11—N1 | 1.460 (3) |
C3—H3B | 0.9600 | C11—C12 | 1.505 (4) |
C3—H3C | 0.9600 | C11—H11A | 0.9700 |
C4—H4A | 0.9600 | C11—H11B | 0.9700 |
C4—H4B | 0.9600 | C12—O5 | 1.418 (3) |
C4—H4C | 0.9600 | C12—C13 | 1.534 (4) |
C5—O4 | 1.204 (3) | C12—H12 | 0.9800 |
C5—O3 | 1.345 (3) | C13—S1 | 1.794 (3) |
C5—N2 | 1.363 (3) | C13—H13A | 0.9700 |
C6—C9 | 1.518 (5) | C13—H13B | 0.9700 |
C6—H6A | 0.9600 | C14—S1 | 1.769 (5) |
C6—H6B | 0.9600 | C14—H14A | 0.9600 |
C6—H6C | 0.9600 | C14—H14B | 0.9600 |
C7—C9 | 1.511 (5) | C14—H14C | 0.9600 |
C7—H7A | 0.9600 | N1—N2 | 1.393 (3) |
C7—H7B | 0.9600 | N2—H2 | 0.9282 |
C7—H7C | 0.9600 | O5—H5 | 0.8200 |
C8—C9 | 1.508 (4) | ||
C2—C1—H1A | 109.5 | H8B—C8—H8C | 109.5 |
C2—C1—H1B | 109.5 | O1—C9—C8 | 108.9 (2) |
H1A—C1—H1B | 109.5 | O1—C9—C7 | 110.5 (2) |
C2—C1—H1C | 109.5 | C8—C9—C7 | 112.9 (3) |
H1A—C1—H1C | 109.5 | O1—C9—C6 | 101.2 (2) |
H1B—C1—H1C | 109.5 | C8—C9—C6 | 111.3 (3) |
O3—C2—C1 | 101.8 (2) | C7—C9—C6 | 111.4 (3) |
O3—C2—C4 | 109.2 (2) | O2—C10—O1 | 125.9 (2) |
C1—C2—C4 | 111.8 (3) | O2—C10—N1 | 122.8 (2) |
O3—C2—C3 | 110.4 (2) | O1—C10—N1 | 111.3 (2) |
C1—C2—C3 | 110.7 (3) | N1—C11—C12 | 114.0 (2) |
C4—C2—C3 | 112.3 (3) | N1—C11—H11A | 108.7 |
C2—C3—H3A | 109.5 | C12—C11—H11A | 108.7 |
C2—C3—H3B | 109.5 | N1—C11—H11B | 108.7 |
H3A—C3—H3B | 109.5 | C12—C11—H11B | 108.7 |
C2—C3—H3C | 109.5 | H11A—C11—H11B | 107.6 |
H3A—C3—H3C | 109.5 | O5—C12—C11 | 108.3 (2) |
H3B—C3—H3C | 109.5 | O5—C12—C13 | 111.4 (2) |
C2—C4—H4A | 109.5 | C11—C12—C13 | 107.6 (2) |
C2—C4—H4B | 109.5 | O5—C12—H12 | 109.8 |
H4A—C4—H4B | 109.5 | C11—C12—H12 | 109.8 |
C2—C4—H4C | 109.5 | C13—C12—H12 | 109.8 |
H4A—C4—H4C | 109.5 | C12—C13—S1 | 115.8 (2) |
H4B—C4—H4C | 109.5 | C12—C13—H13A | 108.3 |
O4—C5—O3 | 127.7 (2) | S1—C13—H13A | 108.3 |
O4—C5—N2 | 125.6 (2) | C12—C13—H13B | 108.3 |
O3—C5—N2 | 106.7 (2) | S1—C13—H13B | 108.3 |
C9—C6—H6A | 109.5 | H13A—C13—H13B | 107.4 |
C9—C6—H6B | 109.5 | S1—C14—H14A | 109.5 |
H6A—C6—H6B | 109.5 | S1—C14—H14B | 109.5 |
C9—C6—H6C | 109.5 | H14A—C14—H14B | 109.5 |
H6A—C6—H6C | 109.5 | S1—C14—H14C | 109.5 |
H6B—C6—H6C | 109.5 | H14A—C14—H14C | 109.5 |
C9—C7—H7A | 109.5 | H14B—C14—H14C | 109.5 |
C9—C7—H7B | 109.5 | C10—N1—N2 | 120.5 (2) |
H7A—C7—H7B | 109.5 | C10—N1—C11 | 119.7 (2) |
C9—C7—H7C | 109.5 | N2—N1—C11 | 115.85 (19) |
H7A—C7—H7C | 109.5 | C5—N2—N1 | 119.2 (2) |
H7B—C7—H7C | 109.5 | C5—N2—H2 | 119.6 |
C9—C8—H8A | 109.5 | N1—N2—H2 | 115.4 |
C9—C8—H8B | 109.5 | C10—O1—C9 | 120.6 (2) |
H8A—C8—H8B | 109.5 | C5—O3—C2 | 122.31 (19) |
C9—C8—H8C | 109.5 | C12—O5—H5 | 109.5 |
H8A—C8—H8C | 109.5 | C14—S1—C13 | 101.96 (19) |
N1—C11—C12—O5 | 62.4 (3) | C11—N1—N2—C5 | 92.7 (3) |
N1—C11—C12—C13 | −177.0 (2) | O2—C10—O1—C9 | −9.8 (4) |
O5—C12—C13—S1 | −71.2 (3) | N1—C10—O1—C9 | 171.7 (2) |
C11—C12—C13—S1 | 170.10 (19) | C8—C9—O1—C10 | 72.2 (3) |
O2—C10—N1—N2 | 171.3 (2) | C7—C9—O1—C10 | −52.4 (4) |
O1—C10—N1—N2 | −10.2 (3) | C6—C9—O1—C10 | −170.5 (2) |
O2—C10—N1—C11 | 14.5 (4) | O4—C5—O3—C2 | 7.7 (4) |
O1—C10—N1—C11 | −167.0 (2) | N2—C5—O3—C2 | −174.0 (2) |
C12—C11—N1—C10 | −141.4 (2) | C1—C2—O3—C5 | −179.9 (2) |
C12—C11—N1—N2 | 60.8 (3) | C4—C2—O3—C5 | 61.8 (3) |
O4—C5—N2—N1 | −8.6 (4) | C3—C2—O3—C5 | −62.3 (3) |
O3—C5—N2—N1 | 173.04 (19) | C12—C13—S1—C14 | −89.1 (3) |
C10—N1—N2—C5 | −65.0 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5···O2i | 0.82 | 2.03 | 2.842 (3) | 168 |
N2—H2···O5i | 0.93 | 2.07 | 2.996 (3) | 172 |
Symmetry code: (i) −x+1, y−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5···O2i | 0.82 | 2.03 | 2.842 (3) | 168.2 |
N2—H2···O5i | 0.93 | 2.07 | 2.996 (3) | 171.5 |
Symmetry code: (i) −x+1, y−1/2, −z+1/2. |
Acknowledgements
We are grateful for financial support from the National Natural Science Foundation of China (No. 81302644).
References
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Nifuratel is a medicine used in gynecology (Budavari et al., 1989; Mendling et al., 2002). It is a local antiprotozoal and antifungal agent that may also be given orally. The tile compound is a key intermediate of nifuratel, herewith we report the synthesis and the crystal structure of the title compound. In the molecule of the title compound, all bond lengths and angles have normal values with C—C bond lengths between 1.510 (4) to 1.514 (4) Å and slightly shorter C—N distances, 1.367 (3) and 1.460 (3) Å, as expected (Fig. 1). Molecules are linked by N5—H5···O2i and N2—H2···O5i (i = -x + 1, y - 1/2, -z + 1/2) hydrogen bonds involving the imino group N atom, the ester group O atom and hydroxyl O atom into chains running parallel to the b axis (Fig. 2).