organic compounds
E)-2-(4-methoxystyryl)-2,3-dihydro-1H-perimidine acetonitrile monosolvate
of (aDepartment of Chemistry, Faculty of Science, Annamalai University, Annamalainagar 608 002, India, and bDepartment of Physics, Kalasalingam University, Krishnankoil 626 126, India
*Correspondence e-mail: profmeka1@gmail.com
The title compound, C20H18N2O·CH3CN, a perimidine derivative, crystallized as an acetonitrile monosolvate. The planes of the naphthalene ring system and the methoxyphenyl ring are oriented almost perpendicular to one another, with a dihedral angle of 87.61 (6)°. The conformation about the C=C bond is E. The hexahydropyrimidine ring has an with the methine C atom as the flap. In the crystal, the molecules are linked by N—H⋯N hydrogen bonds involving the acetonitrile solvent molecule as acceptor, forming zigzag chains propagating along [100].
CCDC reference: 1015577
1. Related literature
For the diverse range of biological activities of perimidines, see: Bu et al. (2001); Ivica et al. (2008); Azeez & Salih (2014). For a related structure, see: Maloney et al. (2013).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2008); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
CCDC reference: 1015577
10.1107/S1600536814017000/su2762sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814017000/su2762Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814017000/su2762Isup3.cml
A mixture of 4-methoxy-trans-cinnamaldehyde (0.01 mol), 1,8-diaminonaphthalene (0.01 mol) and a pinch of MgSO4.7H2O was finely grinded in a mortor. The mixture was then kept under microwave irradiation (LG Grill, Intellowave 160-800 W, consumption 800 W, output power 320 W and frequency 2450 MHz) operating in a cyclic mode to prevent intense boiling of the sample as well as aggregation of 320 W at 12 min. A brown colour solid separated out which was repeatedly recrystallized using CH2Cl2:CH3CN (1:5) to obtain brown crystals.
Crystal data, data collection and structure
details are summarized in Table 2. Atoms H1 and H2 were located from a difference Fourier map and freely refined. The C-bound H atoms were positioned geometrically and allowed to ride on their parent atoms: C—H = 0.93-0.96 Å with Uiso(H) = 1.5Ueq(C-methyl) and Uiso(H) = 1.2Ueq for other C atoms.Data collection: CrysAlis PRO (Oxford Diffraction, 2008); cell
CrysAlis PRO (Oxford Diffraction, 2008); data reduction: CrysAlis PRO (Oxford Diffraction, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).C20H18N2O·C2H3N | Z = 2 |
Mr = 343.42 | F(000) = 364 |
Triclinic, P1 | Dx = 1.224 Mg m−3 |
a = 7.8128 (7) Å | Cu Kα radiation, λ = 1.54184 Å |
b = 8.4641 (7) Å | Cell parameters from 2420 reflections |
c = 14.7427 (14) Å | θ = 3.8–26.7° |
α = 79.513 (7)° | µ = 0.60 mm−1 |
β = 83.861 (7)° | T = 292 K |
γ = 77.076 (7)° | Block, colourless |
V = 932.11 (15) Å3 | 0.30 × 0.30 × 0.19 mm |
Oxford Diffraction Gemini/EOS CCD diffractometer | 2940 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.023 |
ϕ and ω scans | θmax = 72.0°, θmin = 3.1° |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2008) | h = −8→9 |
Tmin = 0.840, Tmax = 0.890 | k = −9→10 |
5843 measured reflections | l = −18→18 |
3569 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.048 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.142 | w = 1/[σ2(Fo2) + (0.0768P)2 + 0.0999P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
3569 reflections | Δρmax = 0.19 e Å−3 |
246 parameters | Δρmin = −0.20 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.038 (2) |
C20H18N2O·C2H3N | γ = 77.076 (7)° |
Mr = 343.42 | V = 932.11 (15) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.8128 (7) Å | Cu Kα radiation |
b = 8.4641 (7) Å | µ = 0.60 mm−1 |
c = 14.7427 (14) Å | T = 292 K |
α = 79.513 (7)° | 0.30 × 0.30 × 0.19 mm |
β = 83.861 (7)° |
Oxford Diffraction Gemini/EOS CCD diffractometer | 3569 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2008) | 2940 reflections with I > 2σ(I) |
Tmin = 0.840, Tmax = 0.890 | Rint = 0.023 |
5843 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.19 e Å−3 |
3569 reflections | Δρmin = −0.20 e Å−3 |
246 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.19042 (19) | 0.58843 (14) | 0.01925 (7) | 0.0797 (4) | |
N1 | 0.36331 (18) | 0.27710 (16) | 0.60754 (8) | 0.0591 (3) | |
H1 | 0.465 (2) | 0.295 (2) | 0.5801 (12) | 0.070 (5)* | |
N2 | 0.10070 (17) | 0.19149 (16) | 0.60104 (8) | 0.0565 (3) | |
H2 | 0.027 (2) | 0.170 (2) | 0.5698 (12) | 0.066 (5)* | |
N3 | 0.2463 (3) | 0.7821 (3) | 0.50695 (14) | 0.1157 (7) | |
C1 | 0.2221 (2) | 0.49942 (17) | 0.10443 (9) | 0.0541 (3) | |
C2 | 0.1430 (2) | 0.57618 (17) | 0.17864 (10) | 0.0579 (4) | |
H2A | 0.0739 | 0.6816 | 0.1677 | 0.069* | |
C3 | 0.16593 (19) | 0.49800 (17) | 0.26764 (9) | 0.0534 (3) | |
H3 | 0.1121 | 0.5512 | 0.3164 | 0.064* | |
C4 | 0.26887 (17) | 0.33940 (16) | 0.28649 (9) | 0.0469 (3) | |
C5 | 0.34737 (19) | 0.26561 (17) | 0.21182 (9) | 0.0550 (4) | |
H5 | 0.4168 | 0.1603 | 0.2227 | 0.066* | |
C6 | 0.3260 (2) | 0.34347 (18) | 0.12137 (10) | 0.0577 (4) | |
H6 | 0.3811 | 0.2912 | 0.0725 | 0.069* | |
C7 | 0.2448 (3) | 0.5081 (3) | −0.05893 (11) | 0.0848 (6) | |
H7A | 0.3710 | 0.4773 | −0.0645 | 0.127* | |
H7B | 0.2041 | 0.5813 | −0.1137 | 0.127* | |
H7C | 0.1961 | 0.4116 | −0.0514 | 0.127* | |
C8 | 0.29403 (18) | 0.25000 (17) | 0.38074 (9) | 0.0518 (3) | |
H8 | 0.3531 | 0.1408 | 0.3858 | 0.062* | |
C9 | 0.2431 (2) | 0.30587 (18) | 0.45874 (10) | 0.0599 (4) | |
H9 | 0.1876 | 0.4158 | 0.4560 | 0.072* | |
C10 | 0.26927 (19) | 0.20271 (18) | 0.55165 (9) | 0.0550 (4) | |
H10 | 0.3362 | 0.0925 | 0.5446 | 0.066* | |
C11 | 0.37511 (18) | 0.20595 (16) | 0.70001 (9) | 0.0495 (3) | |
C12 | 0.5038 (2) | 0.22395 (19) | 0.75213 (11) | 0.0616 (4) | |
H12 | 0.5903 | 0.2804 | 0.7247 | 0.074* | |
C13 | 0.5045 (2) | 0.1575 (2) | 0.84619 (11) | 0.0668 (4) | |
H13 | 0.5919 | 0.1710 | 0.8805 | 0.080* | |
C14 | 0.3811 (2) | 0.0739 (2) | 0.88851 (10) | 0.0625 (4) | |
H14 | 0.3848 | 0.0307 | 0.9511 | 0.075* | |
C15 | 0.24639 (18) | 0.05219 (16) | 0.83788 (9) | 0.0526 (3) | |
C16 | 0.1127 (2) | −0.03118 (19) | 0.87873 (11) | 0.0644 (4) | |
H16 | 0.1144 | −0.0795 | 0.9407 | 0.077* | |
C17 | −0.0188 (2) | −0.0412 (2) | 0.82776 (12) | 0.0684 (4) | |
H17 | −0.1062 | −0.0964 | 0.8555 | 0.082* | |
C18 | −0.02515 (19) | 0.03028 (19) | 0.73418 (11) | 0.0608 (4) | |
H18 | −0.1172 | 0.0235 | 0.7009 | 0.073* | |
C19 | 0.10345 (17) | 0.10989 (16) | 0.69160 (9) | 0.0489 (3) | |
C20 | 0.24349 (16) | 0.12050 (15) | 0.74293 (9) | 0.0460 (3) | |
C21 | 0.2512 (3) | 0.6594 (2) | 0.67886 (14) | 0.0835 (5) | |
H21A | 0.3480 | 0.5668 | 0.6877 | 0.125* | |
H21B | 0.1430 | 0.6246 | 0.7000 | 0.125* | |
H21C | 0.2655 | 0.7410 | 0.7134 | 0.125* | |
C22 | 0.2473 (2) | 0.7278 (2) | 0.58287 (14) | 0.0749 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.1225 (10) | 0.0607 (7) | 0.0433 (6) | −0.0013 (6) | 0.0027 (6) | −0.0027 (5) |
N1 | 0.0629 (8) | 0.0651 (8) | 0.0494 (7) | −0.0174 (6) | −0.0017 (6) | −0.0063 (6) |
N2 | 0.0556 (7) | 0.0655 (8) | 0.0475 (7) | −0.0064 (5) | −0.0112 (5) | −0.0100 (5) |
N3 | 0.1015 (14) | 0.168 (2) | 0.0829 (13) | −0.0474 (14) | −0.0207 (10) | −0.0021 (13) |
C1 | 0.0677 (8) | 0.0491 (7) | 0.0437 (7) | −0.0121 (6) | 0.0009 (6) | −0.0056 (6) |
C2 | 0.0710 (9) | 0.0436 (7) | 0.0528 (8) | 0.0004 (6) | −0.0005 (7) | −0.0093 (6) |
C3 | 0.0616 (8) | 0.0503 (7) | 0.0460 (7) | −0.0042 (6) | 0.0024 (6) | −0.0147 (6) |
C4 | 0.0472 (7) | 0.0477 (7) | 0.0460 (7) | −0.0083 (5) | −0.0015 (5) | −0.0112 (5) |
C5 | 0.0619 (8) | 0.0473 (7) | 0.0508 (8) | 0.0012 (6) | −0.0017 (6) | −0.0116 (6) |
C6 | 0.0690 (9) | 0.0543 (8) | 0.0473 (7) | −0.0054 (6) | 0.0059 (6) | −0.0168 (6) |
C7 | 0.1177 (16) | 0.0847 (12) | 0.0441 (9) | −0.0088 (11) | 0.0010 (9) | −0.0093 (8) |
C8 | 0.0534 (7) | 0.0503 (7) | 0.0492 (7) | −0.0039 (6) | −0.0049 (6) | −0.0095 (6) |
C9 | 0.0728 (9) | 0.0531 (8) | 0.0477 (8) | −0.0005 (7) | −0.0048 (7) | −0.0079 (6) |
C10 | 0.0624 (8) | 0.0534 (8) | 0.0449 (7) | −0.0015 (6) | −0.0043 (6) | −0.0096 (6) |
C11 | 0.0507 (7) | 0.0481 (7) | 0.0464 (7) | −0.0012 (5) | −0.0034 (5) | −0.0108 (5) |
C12 | 0.0558 (8) | 0.0629 (9) | 0.0677 (9) | −0.0096 (7) | −0.0083 (7) | −0.0157 (7) |
C13 | 0.0647 (9) | 0.0715 (10) | 0.0651 (9) | 0.0021 (8) | −0.0226 (7) | −0.0230 (8) |
C14 | 0.0692 (9) | 0.0649 (9) | 0.0459 (7) | 0.0092 (7) | −0.0135 (7) | −0.0127 (6) |
C15 | 0.0569 (8) | 0.0471 (7) | 0.0455 (7) | 0.0080 (6) | −0.0027 (6) | −0.0097 (5) |
C16 | 0.0738 (10) | 0.0573 (8) | 0.0506 (8) | −0.0005 (7) | 0.0061 (7) | −0.0015 (6) |
C17 | 0.0660 (9) | 0.0624 (9) | 0.0722 (10) | −0.0144 (7) | 0.0123 (8) | −0.0081 (8) |
C18 | 0.0531 (8) | 0.0610 (9) | 0.0688 (9) | −0.0100 (6) | −0.0021 (7) | −0.0154 (7) |
C19 | 0.0499 (7) | 0.0450 (7) | 0.0481 (7) | 0.0011 (5) | −0.0038 (5) | −0.0119 (5) |
C20 | 0.0474 (7) | 0.0419 (6) | 0.0443 (7) | 0.0033 (5) | −0.0029 (5) | −0.0111 (5) |
C21 | 0.0940 (13) | 0.0738 (11) | 0.0794 (12) | −0.0137 (10) | 0.0011 (10) | −0.0126 (9) |
C22 | 0.0647 (10) | 0.0877 (12) | 0.0764 (12) | −0.0204 (9) | −0.0083 (8) | −0.0161 (10) |
O1—C1 | 1.3581 (16) | C9—C10 | 1.4917 (19) |
O1—C7 | 1.422 (2) | C9—H9 | 0.9300 |
N1—C11 | 1.3902 (17) | C10—H10 | 0.9800 |
N1—C10 | 1.4630 (19) | C11—C12 | 1.379 (2) |
N1—H1 | 0.882 (18) | C11—C20 | 1.4170 (19) |
N2—C19 | 1.3869 (17) | C12—C13 | 1.398 (2) |
N2—C10 | 1.4489 (19) | C12—H12 | 0.9300 |
N2—H2 | 0.842 (18) | C13—C14 | 1.355 (2) |
N3—C22 | 1.130 (2) | C13—H13 | 0.9300 |
C1—C6 | 1.381 (2) | C14—C15 | 1.415 (2) |
C1—C2 | 1.3913 (19) | C14—H14 | 0.9300 |
C2—C3 | 1.3685 (19) | C15—C16 | 1.412 (2) |
C2—H2A | 0.9300 | C15—C20 | 1.4144 (18) |
C3—C4 | 1.3983 (19) | C16—C17 | 1.362 (2) |
C3—H3 | 0.9300 | C16—H16 | 0.9300 |
C4—C5 | 1.3830 (18) | C17—C18 | 1.403 (2) |
C4—C8 | 1.4666 (18) | C17—H17 | 0.9300 |
C5—C6 | 1.3852 (19) | C18—C19 | 1.368 (2) |
C5—H5 | 0.9300 | C18—H18 | 0.9300 |
C6—H6 | 0.9300 | C19—C20 | 1.4226 (19) |
C7—H7A | 0.9600 | C21—C22 | 1.429 (3) |
C7—H7B | 0.9600 | C21—H21A | 0.9600 |
C7—H7C | 0.9600 | C21—H21B | 0.9600 |
C8—C9 | 1.312 (2) | C21—H21C | 0.9600 |
C8—H8 | 0.9300 | ||
C1—O1—C7 | 118.12 (13) | N2—C10—H10 | 109.7 |
C11—N1—C10 | 116.49 (12) | N1—C10—H10 | 109.7 |
C11—N1—H1 | 113.1 (11) | C9—C10—H10 | 109.7 |
C10—N1—H1 | 112.6 (11) | C12—C11—N1 | 122.29 (14) |
C19—N2—C10 | 116.97 (11) | C12—C11—C20 | 119.28 (13) |
C19—N2—H2 | 114.5 (12) | N1—C11—C20 | 118.32 (12) |
C10—N2—H2 | 114.7 (12) | C11—C12—C13 | 120.18 (15) |
O1—C1—C6 | 125.11 (13) | C11—C12—H12 | 119.9 |
O1—C1—C2 | 115.59 (13) | C13—C12—H12 | 119.9 |
C6—C1—C2 | 119.30 (13) | C14—C13—C12 | 121.58 (14) |
C3—C2—C1 | 120.63 (13) | C14—C13—H13 | 119.2 |
C3—C2—H2A | 119.7 | C12—C13—H13 | 119.2 |
C1—C2—H2A | 119.7 | C13—C14—C15 | 120.31 (14) |
C2—C3—C4 | 121.10 (12) | C13—C14—H14 | 119.8 |
C2—C3—H3 | 119.5 | C15—C14—H14 | 119.8 |
C4—C3—H3 | 119.5 | C16—C15—C20 | 118.76 (13) |
C5—C4—C3 | 117.41 (12) | C16—C15—C14 | 122.73 (14) |
C5—C4—C8 | 119.73 (12) | C20—C15—C14 | 118.49 (14) |
C3—C4—C8 | 122.85 (12) | C17—C16—C15 | 120.21 (14) |
C4—C5—C6 | 122.15 (12) | C17—C16—H16 | 119.9 |
C4—C5—H5 | 118.9 | C15—C16—H16 | 119.9 |
C6—C5—H5 | 118.9 | C16—C17—C18 | 121.29 (15) |
C1—C6—C5 | 119.41 (13) | C16—C17—H17 | 119.4 |
C1—C6—H6 | 120.3 | C18—C17—H17 | 119.4 |
C5—C6—H6 | 120.3 | C19—C18—C17 | 120.33 (14) |
O1—C7—H7A | 109.5 | C19—C18—H18 | 119.8 |
O1—C7—H7B | 109.5 | C17—C18—H18 | 119.8 |
H7A—C7—H7B | 109.5 | C18—C19—N2 | 123.57 (13) |
O1—C7—H7C | 109.5 | C18—C19—C20 | 119.56 (13) |
H7A—C7—H7C | 109.5 | N2—C19—C20 | 116.74 (12) |
H7B—C7—H7C | 109.5 | C15—C20—C11 | 120.15 (12) |
C9—C8—C4 | 127.69 (13) | C15—C20—C19 | 119.81 (13) |
C9—C8—H8 | 116.2 | C11—C20—C19 | 119.98 (12) |
C4—C8—H8 | 116.2 | C22—C21—H21A | 109.5 |
C8—C9—C10 | 123.58 (14) | C22—C21—H21B | 109.5 |
C8—C9—H9 | 118.2 | H21A—C21—H21B | 109.5 |
C10—C9—H9 | 118.2 | C22—C21—H21C | 109.5 |
N2—C10—N1 | 106.95 (11) | H21A—C21—H21C | 109.5 |
N2—C10—C9 | 110.23 (12) | H21B—C21—H21C | 109.5 |
N1—C10—C9 | 110.56 (12) | N3—C22—C21 | 179.1 (2) |
C7—O1—C1—C6 | 10.1 (3) | C11—C12—C13—C14 | 0.2 (2) |
C7—O1—C1—C2 | −170.59 (16) | C12—C13—C14—C15 | −0.2 (2) |
O1—C1—C2—C3 | −179.98 (14) | C13—C14—C15—C16 | −178.84 (14) |
C6—C1—C2—C3 | −0.7 (2) | C13—C14—C15—C20 | −0.5 (2) |
C1—C2—C3—C4 | −0.1 (2) | C20—C15—C16—C17 | −1.8 (2) |
C2—C3—C4—C5 | 0.5 (2) | C14—C15—C16—C17 | 176.61 (14) |
C2—C3—C4—C8 | −178.77 (13) | C15—C16—C17—C18 | 0.0 (2) |
C3—C4—C5—C6 | −0.2 (2) | C16—C17—C18—C19 | 1.0 (2) |
C8—C4—C5—C6 | 179.08 (13) | C17—C18—C19—N2 | −176.13 (13) |
O1—C1—C6—C5 | −179.82 (14) | C17—C18—C19—C20 | −0.3 (2) |
C2—C1—C6—C5 | 0.9 (2) | C10—N2—C19—C18 | −152.05 (14) |
C4—C5—C6—C1 | −0.5 (2) | C10—N2—C19—C20 | 31.99 (17) |
C5—C4—C8—C9 | 173.37 (16) | C16—C15—C20—C11 | 179.55 (12) |
C3—C4—C8—C9 | −7.4 (2) | C14—C15—C20—C11 | 1.10 (19) |
C4—C8—C9—C10 | 177.61 (13) | C16—C15—C20—C19 | 2.48 (18) |
C19—N2—C10—N1 | −54.88 (16) | C14—C15—C20—C19 | −175.97 (12) |
C19—N2—C10—C9 | −175.12 (11) | C12—C11—C20—C15 | −1.08 (19) |
C11—N1—C10—N2 | 51.33 (16) | N1—C11—C20—C15 | −177.36 (11) |
C11—N1—C10—C9 | 171.35 (12) | C12—C11—C20—C19 | 175.98 (12) |
C8—C9—C10—N2 | −116.90 (17) | N1—C11—C20—C19 | −0.30 (19) |
C8—C9—C10—N1 | 125.05 (16) | C18—C19—C20—C15 | −1.48 (19) |
C10—N1—C11—C12 | 157.87 (14) | N2—C19—C20—C15 | 174.65 (11) |
C10—N1—C11—C20 | −25.97 (18) | C18—C19—C20—C11 | −178.55 (12) |
N1—C11—C12—C13 | 176.53 (13) | N2—C19—C20—C11 | −2.42 (18) |
C20—C11—C12—C13 | 0.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···N3i | 0.88 (2) | 2.49 (2) | 3.305 (3) | 154.1 (15) |
N2—H2···N3ii | 0.84 (2) | 2.44 (2) | 3.234 (2) | 156.8 (16) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···N3i | 0.88 (2) | 2.49 (2) | 3.305 (3) | 154.1 (15) |
N2—H2···N3ii | 0.84 (2) | 2.44 (2) | 3.234 (2) | 156.8 (16) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+1, −z+1. |
Acknowledgements
We are grateful to IICT, Hyderabad, for support of the instrumentation facility.
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