organic compounds
H-chromene-3-carbaldehyde
of 7-bromo-4-oxo-4aSchool of Pharmaceutical Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
*Correspondence e-mail: ishi206@u-shizuoka-ken.ac.jp
In the title compound, C10H5BrO3, a brominated 3-formylchromone derivative, all atoms are essentially coplanar (r.m.s. = 0.0631 Å for the non-H atoms), with the largest deviation from the least-squares plane [0.215 (3) Å] being for the formyl O atom. In the crystal, molecules are linked into tapes through C—H⋯O hydrogen bonds and these tapes are assembled by stacking interactions [centroid–centroid distance between the pyran rings = 3.858 (3) Å] to form supramolecular layers that stack along the c axis.
Keywords: crystal structure; chromone; C—H⋯O hydrogen bonding; stacking interaction.
CCDC reference: 1018275
1. Related literature
For related structures, see: Ishikawa (2014a,b). For halogen bonding, see: Auffinger et al. (2004); Metrangolo et al. (2005); Wilcken et al. (2013); Sirimulla et al. (2013). For halogen–halogen interactions, see: Metrangolo & Resnati (2014); Mukherjee & Desiraju (2014).
2. Experimental
2.1. Crystal data
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2.1.3. Refinement
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Data collection: WinAFC Diffractometer Control Software (Rigaku, 1999); cell WinAFC Diffractometer Control Software; data reduction: WinAFC Diffractometer Control Software; program(s) used to solve structure: SIR2008 (Burla et al., 2007); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure.
Supporting information
CCDC reference: 1018275
10.1107/S1600536814018108/tk5337sup1.cif
contains datablocks General, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814018108/tk5337Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814018108/tk5337Isup3.cml
Halogen bonding and halogen···halogen interaction have recently attracted much attention in medicinal chemistry, chemical biology, supramolecular chemistry and crystal engineering (Auffinger et al., 2004, Metrangolo et al., 2005, Wilcken et al., 2013, Sirimulla et al., 2013, Mukherjee & Desiraju, 2014, Metrangolo & Resnati, 2014). We have recently reported the crystal structures of a dibrominated 3-formylchromone derivative 6,8-dibromo-4-oxo-4H-chromene-3-carbaldehyde (Ishikawa, 2014a) and a monobrominated 3-formylchromone derivative 6-bromo-4-oxo-4H-chromene-3-carbaldehyde (Ishikawa, 2014b). Halogen bonding between the formyl oxygen atom and the bromine atom at 8-position and type II halogen···halogen interaction between the bromine atoms at 6-position are observed in 6,8-dibromo-4-oxo-4H-chromene-3-carbaldehyde (Fig.3, top). On the other hand, halogen bonding between the formyl oxygen atom and the bromine atom at 6-position is found in 6-bromo-4-oxo-4H-chromene-3-carbaldehyde (Fig.3, middle). As part of our interest in these types of chemical bonding, we herein report the
of a monobrominated 3-formylchromone derivative 7-bromo-4-oxo-4H-chromene-3-carbaldehyde.The objective of this study is to reveal whether a short contact is found for the bromine atom at 7-position. The mean deviation of the least-square planes for the non-hydrogen atoms is 0.0631 Å, and the largest deviation is 0.215 (3) Å for the formyl O3 atom (Fig. 1). In the crystal, the molecules are linked through C–H···O hydrogen bonds between the translation-symmetryi and inversion-symmetry equivalentsii,iii to form tapes [i: x + 1, y + 1, z, ii: –x, –y + 1, –z + 1, iii: –x + 1, –y + 2, –z + 1], which are further assembled by stacking interactions [centroid–centroid distance between the pyran rings of the 4H-chromene units = 3.858 (3) Å], as shown in Fig. 2. A short contact for the bromine atom at 7-position is not observed (Fig. 3, bottom).
To a solution of 4-bromo-2-hydroxyacetophenone (4.7 mmol) in N,N-dimethylformamide (15 ml) was added drop-wise POCl3 (11.6 mmol) at 0 °C. After the mixture was stirred for 14 h at room temperature, water (50 ml) was added. The precipitates were collected, washed with water, and dried in vacuo (yield: 84%). 1H NMR (400 MHz, CDCl3): δ = 7.48 (d, 1H, J = 8.8 Hz), 7.57 (s, 1H), 8.24 (d, 1H, J = 8.8 Hz), 8.52 (s, 1H), 10.37 (s, 1H). DART-MS calcd for [C10H5BrO3 + H+]: 252.950, found 252.981. Single crystals suitable for X-ray diffraction were obtained from a 1,2-dichloroethane/cyclohexane solution of the title compound at room temperature.
Data collection: WinAFC Diffractometer Control Software (Rigaku, 1999); cell
WinAFC Diffractometer Control Software (Rigaku, 1999); data reduction: WinAFC Diffractometer Control Software (Rigaku, 1999); program(s) used to solve structure: SIR2008 (Burla et al., 2007); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).C10H5BrO3 | F(000) = 496.00 |
Mr = 253.05 | Dx = 1.931 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
a = 3.8580 (18) Å | θ = 15.3–17.5° |
b = 6.054 (4) Å | µ = 4.71 mm−1 |
c = 37.268 (13) Å | T = 100 K |
β = 90.39 (4)° | Plate, colourless |
V = 870.4 (8) Å3 | 0.45 × 0.20 × 0.10 mm |
Z = 4 |
Rigaku AFC-7R diffractometer | Rint = 0.024 |
ω scans | θmax = 27.5° |
Absorption correction: ψ scan (North et al., 1968) | h = −5→2 |
Tmin = 0.339, Tmax = 0.624 | k = −7→7 |
4817 measured reflections | l = −48→48 |
1980 independent reflections | 3 standard reflections every 150 reflections |
1710 reflections with F2 > 2σ(F2) | intensity decay: 4.8% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.109 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0756P)2 + 0.989P] where P = (Fo2 + 2Fc2)/3 |
1980 reflections | (Δ/σ)max = 0.002 |
127 parameters | Δρmax = 1.26 e Å−3 |
0 restraints | Δρmin = −1.73 e Å−3 |
Primary atom site location: structure-invariant direct methods |
C10H5BrO3 | V = 870.4 (8) Å3 |
Mr = 253.05 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 3.8580 (18) Å | µ = 4.71 mm−1 |
b = 6.054 (4) Å | T = 100 K |
c = 37.268 (13) Å | 0.45 × 0.20 × 0.10 mm |
β = 90.39 (4)° |
Rigaku AFC-7R diffractometer | 1710 reflections with F2 > 2σ(F2) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.024 |
Tmin = 0.339, Tmax = 0.624 | 3 standard reflections every 150 reflections |
4817 measured reflections | intensity decay: 4.8% |
1980 independent reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.109 | H-atom parameters constrained |
S = 1.07 | Δρmax = 1.26 e Å−3 |
1980 reflections | Δρmin = −1.73 e Å−3 |
127 parameters |
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.08234 (8) | 0.06978 (6) | 0.719199 (7) | 0.01987 (15) | |
O1 | 0.1286 (6) | 0.3047 (4) | 0.58604 (6) | 0.0198 (5) | |
O2 | 0.6540 (7) | 0.8813 (4) | 0.60418 (6) | 0.0253 (6) | |
O3 | 0.2989 (8) | 0.7487 (5) | 0.50270 (6) | 0.0321 (6) | |
C1 | 0.1969 (9) | 0.4490 (6) | 0.55957 (8) | 0.0199 (7) | |
C2 | 0.3614 (9) | 0.6437 (6) | 0.56382 (8) | 0.0190 (7) | |
C3 | 0.4862 (8) | 0.7122 (6) | 0.59908 (8) | 0.0181 (6) | |
C4 | 0.4730 (9) | 0.6080 (6) | 0.66421 (8) | 0.0173 (6) | |
C5 | 0.3830 (9) | 0.4628 (6) | 0.69123 (8) | 0.0187 (7) | |
C6 | 0.2140 (8) | 0.2670 (6) | 0.68222 (8) | 0.0167 (6) | |
C7 | 0.1322 (8) | 0.2111 (6) | 0.64716 (8) | 0.0170 (6) | |
C8 | 0.3930 (9) | 0.5598 (5) | 0.62828 (8) | 0.0169 (7) | |
C9 | 0.2221 (8) | 0.3622 (6) | 0.62059 (8) | 0.0164 (6) | |
C10 | 0.4165 (9) | 0.7874 (7) | 0.53244 (9) | 0.0256 (8) | |
H1 | 0.1233 | 0.4106 | 0.5360 | 0.0238* | |
H2 | 0.5900 | 0.7415 | 0.6700 | 0.0207* | |
H3 | 0.4357 | 0.4961 | 0.7156 | 0.0224* | |
H4 | 0.0197 | 0.0759 | 0.6415 | 0.0203* | |
H5 | 0.5512 | 0.9174 | 0.5356 | 0.0307* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0190 (3) | 0.0305 (3) | 0.01010 (19) | −0.00138 (11) | 0.00019 (12) | 0.00367 (11) |
O1 | 0.0260 (12) | 0.0252 (12) | 0.0083 (10) | −0.0074 (10) | −0.0036 (9) | −0.0010 (9) |
O2 | 0.0336 (14) | 0.0259 (12) | 0.0162 (11) | −0.0107 (11) | −0.0033 (10) | −0.0010 (10) |
O3 | 0.0437 (16) | 0.0392 (15) | 0.0133 (12) | −0.0131 (12) | −0.0067 (11) | 0.0046 (11) |
C1 | 0.0209 (16) | 0.0291 (18) | 0.0095 (14) | −0.0034 (13) | −0.0018 (12) | −0.0010 (12) |
C2 | 0.0214 (16) | 0.0261 (16) | 0.0096 (13) | −0.0028 (13) | −0.0008 (12) | 0.0006 (12) |
C3 | 0.0197 (15) | 0.0240 (15) | 0.0107 (14) | −0.0011 (12) | 0.0011 (11) | −0.0015 (12) |
C4 | 0.0175 (15) | 0.0245 (16) | 0.0098 (14) | −0.0003 (12) | −0.0021 (11) | −0.0049 (12) |
C5 | 0.0192 (16) | 0.0268 (17) | 0.0099 (14) | −0.0008 (12) | −0.0015 (12) | −0.0030 (12) |
C6 | 0.0149 (14) | 0.0260 (16) | 0.0091 (13) | 0.0001 (12) | −0.0003 (10) | 0.0001 (12) |
C7 | 0.0154 (14) | 0.0226 (15) | 0.0128 (14) | −0.0035 (12) | −0.0017 (11) | −0.0022 (12) |
C8 | 0.0179 (15) | 0.0231 (16) | 0.0095 (14) | −0.0023 (12) | −0.0013 (12) | −0.0014 (11) |
C9 | 0.0175 (15) | 0.0247 (15) | 0.0070 (13) | −0.0010 (12) | −0.0022 (11) | −0.0043 (12) |
C10 | 0.0299 (19) | 0.0299 (17) | 0.0171 (16) | −0.0078 (15) | −0.0006 (14) | 0.0021 (14) |
Br1—C6 | 1.895 (4) | C4—C8 | 1.403 (5) |
O1—C1 | 1.345 (4) | C5—C6 | 1.393 (5) |
O1—C9 | 1.379 (4) | C6—C7 | 1.384 (5) |
O2—C3 | 1.226 (4) | C7—C9 | 1.394 (5) |
O3—C10 | 1.217 (5) | C8—C9 | 1.395 (5) |
C1—C2 | 1.348 (5) | C1—H1 | 0.950 |
C2—C3 | 1.457 (5) | C4—H2 | 0.950 |
C2—C10 | 1.474 (5) | C5—H3 | 0.950 |
C3—C8 | 1.473 (5) | C7—H4 | 0.950 |
C4—C5 | 1.382 (5) | C10—H5 | 0.950 |
O1···C3 | 2.866 (5) | C10···H1 | 2.5501 |
O2···C1 | 3.561 (5) | H1···H5 | 3.4843 |
O2···C4 | 2.873 (4) | H2···H3 | 2.3357 |
O2···C10 | 2.877 (5) | Br1···H2i | 3.2968 |
O3···C1 | 2.820 (4) | Br1···H2ii | 3.3454 |
C1···C7 | 3.578 (5) | Br1···H3iii | 3.5917 |
C1···C8 | 2.748 (5) | Br1···H3x | 3.1886 |
C2···C9 | 2.772 (5) | Br1···H3xi | 3.0827 |
C4···C7 | 2.810 (5) | O1···H5ii | 3.4250 |
C5···C9 | 2.769 (5) | O2···H4iv | 3.0581 |
C6···C8 | 2.771 (5) | O2···H4v | 2.2984 |
O1···O2i | 3.224 (4) | O3···H1ix | 2.3733 |
O1···O2ii | 3.334 (4) | O3···H1vii | 2.8324 |
O1···C3iii | 3.533 (5) | O3···H5iii | 3.3041 |
O2···O1iv | 3.334 (4) | O3···H5viii | 2.5428 |
O2···O1v | 3.224 (4) | C2···H1vi | 3.4277 |
O2···C2vi | 3.440 (5) | C3···H4iv | 3.2588 |
O2···C3vi | 3.376 (5) | C3···H4v | 3.3965 |
O2···C7iv | 3.263 (4) | C4···H2iii | 3.5093 |
O2···C7v | 3.149 (4) | C4···H4iv | 3.4320 |
O2···C8vi | 3.562 (5) | C5···H2iii | 3.5776 |
O2···C9iv | 3.412 (5) | C6···H2ii | 3.5270 |
O3···O3vii | 3.394 (5) | C6···H3iii | 3.5409 |
O3···O3viii | 3.422 (5) | C7···H2ii | 3.4509 |
O3···C1ix | 3.228 (5) | C7···H4vi | 3.5285 |
O3···C1vii | 3.265 (5) | C8···H4iv | 3.4764 |
O3···C10iii | 3.595 (5) | C10···H1vi | 3.5572 |
O3···C10viii | 3.290 (5) | C10···H1ix | 3.4940 |
C1···O3ix | 3.228 (5) | C10···H1vii | 3.3402 |
C1···O3vii | 3.265 (5) | C10···H5iii | 3.4327 |
C1···C2iii | 3.437 (5) | C10···H5viii | 3.1048 |
C1···C3iii | 3.504 (5) | H1···O3ix | 2.3733 |
C2···O2iii | 3.440 (5) | H1···O3vii | 2.8324 |
C2···C1vi | 3.437 (5) | H1···C2iii | 3.4277 |
C3···O1vi | 3.533 (5) | H1···C10iii | 3.5572 |
C3···O2iii | 3.376 (5) | H1···C10ix | 3.4940 |
C3···C1vi | 3.504 (5) | H1···C10vii | 3.3402 |
C4···C6vi | 3.586 (5) | H1···H1ix | 3.0401 |
C4···C7vi | 3.559 (5) | H1···H5ii | 3.4115 |
C5···C6vi | 3.437 (5) | H1···H5vii | 3.5617 |
C6···C4iii | 3.586 (5) | H2···Br1iv | 3.3454 |
C6···C5iii | 3.437 (5) | H2···Br1v | 3.2968 |
C7···O2i | 3.149 (4) | H2···C4vi | 3.5093 |
C7···O2ii | 3.263 (4) | H2···C5vi | 3.5776 |
C7···C4iii | 3.559 (5) | H2···C6iv | 3.5270 |
C8···O2iii | 3.562 (5) | H2···C7iv | 3.4509 |
C8···C9vi | 3.429 (5) | H2···H4iv | 3.1684 |
C9···O2ii | 3.412 (5) | H2···H4v | 2.8291 |
C9···C8iii | 3.429 (5) | H3···Br1vi | 3.5917 |
C10···O3vi | 3.595 (5) | H3···Br1xii | 3.1886 |
C10···O3viii | 3.290 (5) | H3···Br1xiii | 3.0827 |
C10···C10viii | 3.593 (6) | H3···C6vi | 3.5409 |
Br1···H3 | 2.9226 | H4···O2i | 2.2984 |
Br1···H4 | 2.9055 | H4···O2ii | 3.0581 |
O1···H4 | 2.5249 | H4···C3i | 3.3965 |
O2···H2 | 2.6093 | H4···C3ii | 3.2588 |
O2···H5 | 2.5934 | H4···C4ii | 3.4320 |
O3···H1 | 2.4901 | H4···C7iii | 3.5285 |
C1···H5 | 3.2749 | H4···C8ii | 3.4764 |
C3···H1 | 3.2825 | H4···H2i | 2.8291 |
C3···H2 | 2.6775 | H4···H2ii | 3.1684 |
C3···H5 | 2.6858 | H5···O1iv | 3.4250 |
C5···H4 | 3.2949 | H5···O3vi | 3.3041 |
C6···H2 | 3.2513 | H5···O3viii | 2.5428 |
C7···H3 | 3.2879 | H5···C10vi | 3.4327 |
C8···H3 | 3.2793 | H5···C10viii | 3.1048 |
C8···H4 | 3.3027 | H5···H1iv | 3.4115 |
C9···H1 | 3.1864 | H5···H1vii | 3.5617 |
C9···H2 | 3.2628 | H5···H5viii | 2.8597 |
C1—O1—C9 | 118.0 (3) | C4—C8—C9 | 118.4 (3) |
O1—C1—C2 | 125.2 (3) | O1—C9—C7 | 115.7 (3) |
C1—C2—C3 | 120.5 (3) | O1—C9—C8 | 121.9 (3) |
C1—C2—C10 | 119.6 (3) | C7—C9—C8 | 122.4 (3) |
C3—C2—C10 | 120.0 (3) | O3—C10—C2 | 123.6 (4) |
O2—C3—C2 | 123.3 (3) | O1—C1—H1 | 117.410 |
O2—C3—C8 | 122.7 (3) | C2—C1—H1 | 117.401 |
C2—C3—C8 | 114.0 (3) | C5—C4—H2 | 119.709 |
C5—C4—C8 | 120.6 (3) | C8—C4—H2 | 119.732 |
C4—C5—C6 | 119.0 (3) | C4—C5—H3 | 120.507 |
Br1—C6—C5 | 119.2 (3) | C6—C5—H3 | 120.495 |
Br1—C6—C7 | 118.2 (3) | C6—C7—H4 | 121.481 |
C5—C6—C7 | 122.6 (3) | C9—C7—H4 | 121.508 |
C6—C7—C9 | 117.0 (3) | O3—C10—H5 | 118.165 |
C3—C8—C4 | 121.4 (3) | C2—C10—H5 | 118.205 |
C3—C8—C9 | 120.2 (3) | ||
C1—O1—C9—C7 | 177.4 (3) | C8—C4—C5—C6 | 0.5 (5) |
C1—O1—C9—C8 | −2.2 (4) | C8—C4—C5—H3 | −179.5 |
C9—O1—C1—C2 | 2.5 (5) | H2—C4—C5—C6 | −179.5 |
C9—O1—C1—H1 | −177.5 | H2—C4—C5—H3 | 0.5 |
O1—C1—C2—C3 | 0.9 (5) | H2—C4—C8—C3 | −0.0 |
O1—C1—C2—C10 | −179.4 (3) | H2—C4—C8—C9 | 179.8 |
H1—C1—C2—C3 | −179.1 | C4—C5—C6—Br1 | −178.8 (3) |
H1—C1—C2—C10 | 0.6 | C4—C5—C6—C7 | 0.1 (5) |
C1—C2—C3—O2 | 175.8 (3) | H3—C5—C6—Br1 | 1.1 |
C1—C2—C3—C8 | −4.2 (5) | H3—C5—C6—C7 | −179.9 |
C1—C2—C10—O3 | 5.6 (5) | Br1—C6—C7—C9 | 178.02 (18) |
C1—C2—C10—H5 | −174.4 | Br1—C6—C7—H4 | −2.0 |
C3—C2—C10—O3 | −174.7 (3) | C5—C6—C7—C9 | −0.9 (5) |
C3—C2—C10—H5 | 5.3 | C5—C6—C7—H4 | 179.1 |
C10—C2—C3—O2 | −3.9 (5) | C6—C7—C9—O1 | −178.3 (3) |
C10—C2—C3—C8 | 176.1 (3) | C6—C7—C9—C8 | 1.2 (5) |
O2—C3—C8—C4 | 4.2 (5) | H4—C7—C9—O1 | 1.7 |
O2—C3—C8—C9 | −175.6 (3) | H4—C7—C9—C8 | −178.8 |
C2—C3—C8—C4 | −175.8 (3) | C3—C8—C9—O1 | −1.4 (5) |
C2—C3—C8—C9 | 4.4 (4) | C3—C8—C9—C7 | 179.2 (3) |
C5—C4—C8—C3 | 180.0 (3) | C4—C8—C9—O1 | 178.8 (3) |
C5—C4—C8—C9 | −0.2 (5) | C4—C8—C9—C7 | −0.7 (5) |
Symmetry codes: (i) x−1, y−1, z; (ii) x, y−1, z; (iii) x−1, y, z; (iv) x, y+1, z; (v) x+1, y+1, z; (vi) x+1, y, z; (vii) −x+1, −y+1, −z+1; (viii) −x+1, −y+2, −z+1; (ix) −x, −y+1, −z+1; (x) −x, y−1/2, −z+3/2; (xi) −x+1, y−1/2, −z+3/2; (xii) −x, y+1/2, −z+3/2; (xiii) −x+1, y+1/2, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C7v—H4v···O2 | 0.95 | 2.30 | 3.149 (4) | 149 (1) |
C1ix—H1ix···O3 | 0.95 | 2.37 | 3.228 (5) | 149 (1) |
Symmetry codes: (v) x+1, y+1, z; (ix) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
C7i—H4i···O2 | 0.95 | 2.30 | 3.149 (4) | 148.7 (2) |
C1ii—H1ii···O3 | 0.95 | 2.37 | 3.228 (5) | 149.4 (2) |
Symmetry codes: (i) x+1, y+1, z; (ii) −x, −y+1, −z+1. |
Acknowledgements
The University of Shizuoka is acknowledged for instrument support.
References
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