research communications
of bis[4-(dimethylamino)pyridinium] bis(2-nitrobenzoate) trihydrate
aDepartment of Physics, Presidency College, Chennai 600 005, India, bDepartment of Physics, Anna University, Chennai 600 025, India, cDepartment of Physics, CPCL Polytechnic College, Chennai 600 068, India, and dCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Chennai 600 025, India
*Correspondence e-mail: chakkaravarthi_2005@yahoo.com, anbu24663@yahoo.co.in
The title salt, 2C7H11N2+·2C7H4NO4−·3H2O, crystallized with two anions and two cations in the together with three water molecules. Both 4-dimethylaminopyridinium cations are protonated at their pyridine N atoms with the plane of the N(CH3)2 hetero atoms inclined to the pyridine ring by 4.5 (2) and 1.4 (2)°. In the 2-nitrobenzoate anions, the carboxyl and nitro groups are inclined to their respective benzene rings by 77.1 (3) and 20.0 (3)°, and 75.8 (2) and 20.9 (3)°. In the crystal, the anions are linked via O—H⋯O hydrogen bonds involving the water molecules, forming chains along [100]. The cations are linked to these chains by N—H⋯O hydrogen bonds. The chains are linked via C—H⋯O hydrogen bonds and C—H⋯π and π–π interactions [inter-centroid distances range from 3.617 (1) to 3.851 (1) Å], forming a three-dimensional structure.
Keywords: crystal structure; 4-dimethylaminopyrdidine; 2-nitrobenzoic acid; salt; hydrogen bonds; π–π interactions; C—H⋯π interactions.
CCDC reference: 1024182
1. Chemical context
Pyridine derivatives are used as calcium channel blockers and antagonists, and exhibit biological activities such as fungicidal, antibacterial, antifungal, antimycotic (Bossert et al., 1981; Lohaus & Dittmar, 1968; Wang et al.,1989). Benzene derivatives are extensively used in medicinal chemistry as important intermediates for many pharmaceutical products (Altmann et al., 2004). We herein report on the synthesis and of the title salt prepared by the reaction of 4-dimethylaminopyridine with 2-nitrobenzoic acid in hot ethanol as solvent.
2. Structural commentary
The ). The geometric parameters of the title compound are comparable to those reported for similar structures (Babu et al., 2014; Rajkumar et al., 2014), including the compounds 4-dimethylaminopyridinium 2,4-, 3,4- and 3,5-dinitrobenzoate (Hosomi et al., 2000). The conformations of the two cations are very similar as are the conformations of the two anions. Both 4-dimethylaminopyridinium cations are protonated at their pyridine N atoms (N1 and N2) with the planes of the N(CH3)2 hetero atoms (N3/C6/C7 and N4/C13/C14) inclined to the pyridine rings (N1/C1–C5 and N2/C8–C12) by 4.5 (2) and 1.4 (2)°, respectively. In the 2-nitrobenzoate anions the carboxyl groups (O3/O4/C15 and O5/O6/C28) are inclined to the respective benzene rings (C16–C21 and C22–C27) by 77.1 (3) and 75.8 (2)°. The nitro groups (O1/O2/N5 and O7/O8/N6) are inclined to their respective benzene rings by 20.0 (3) and 20.9 (3)°.
of the title salt consists of two 4-dimethylaminopyrdinium cations and two 2-nitrobenzoate anions, together with three water molecules (Fig. 13. Supramolecular features
In the crystal, the dihedral angle between the two pyridine rings (N1/C1–C5 and N2/C8–C12) is 5.16 (9)°, while the benzene rings (C16–C21 and C22–C27) form a dihedral angle of 19.56 (9)°. The anions are linked via O—H⋯O hydrogen bonds involving the water molecules, forming chains along [100]; Table 1 and Fig. 2. The cations are linked to these chains by N—H⋯O hydrogen bonds (Table 1). The chains are linked via C—H⋯O hydrogen bonds and C—H⋯π and π–π interactions, forming a three-dimensional structure [Cg1⋯Cg1i = 3.851 (1); Cg2⋯Cg2ii = 3.656 (1); Cg3⋯Cg3iii = 3.617 (1) Å; Cg1, Cg2, and Cg3 are the centroids of rings N1/C1–C5, N2/C8–C12, and C16–C21, respectively; symmetry codes: (i) −x + 2, −y + 1, −z + 2; (ii) −x + 2, −y + 3, −z + 1; (iii) −x + 2, −y + 2, −z + 2].
4. Database survey
A search of the Cambridge Structural Database (Version 5.35, last update May 2014; Allen, 2002) of salts including benzoate anions and the cation 4-dimethylaminopyridinium yielded 15 hits. Three of these salts have as anions 2,4-dinitrobenzoate, 3,4-dinitrobenzoate and 3,5-dinitrobenzoate (KOBMAP, KOBNAQ, and KOBNOE, respectively; Hosomi et al., 2000). They were studied for their potential SHG properties; only the 3,5-dintrobenzoate salt crystallized in a non-centrosymmetric space group.
5. Synthesis and crystallization
4-Dimethylaminopyridine (2.442 g, 1 mmol) and 2-nitrobenzoic acid (3.342 g, 1mmol) were dissolved in 50 ml of hot ethanol as a solvent. The mixture was stirred well for 8 h to give a homogeneous solution and is was then allowed to evaporate in air at room temperature. Within a few days, small colourless block-like crystals of the title salt were formed.
6. Refinement
Crystal data, data collection and structure . Water H atoms and the pyridinium N atoms were located from difference Fourier maps and refined with distance restraints. O—H = 0.82 (1) and N—H = 0.88 (1) Å, with Uiso(H) = 1.5Ueq(O) for the water H atoms. The C-bound H atoms were positioned geometrically and refined using a riding model: C—H = 0.93–0.96 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(C) for other H atoms.
details are summarized in Table 2
|
Supporting information
CCDC reference: 1024182
10.1107/S1600536814020583/su2777sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814020583/su2777Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814020583/su2777Isup3.cml
Pyridine derivatives are used as calcium channel blockers and antagonists, and exhibit biological activities such as fungicidal, antibacterial, antifungal, antimycotic (Bossert et al., 1981; Lohaus & Dittmar, 1968; Wang et al.,1989). Benzene derivatives are extensively used in medicinal chemistry as important intermediates for many pharmaceutical products (Altmann et al., 2004). We herein report on the synthesis and
of the title salt prepared by the reaction of 4-dimethylaminopyridine with 2-nitrobenzoic acid in hot ethanol as solvent.The
of the title salt consists of two 4-dimethylaminopyrdinium cations and two 2-nitrobenzoate anions, together with three water molecules (Fig. 1). The geometric parameters of the title compound are comparable to those reported for similar structures (Babu et al., 2014; Rajkumar et al., 2014), including the compounds 4-dimethylaminopyridinium 2,4-, 3,4- and 3,5-dinitrobenzoate (Hosomi et al., 2000). The conformations of the two cations are very similar as are the conformations of the two anions. Both 4-dimethylaminopyridinium cations are protonated at their pyridine N atoms (N1 and N2) with the planes of the N(CH3)2 hetero atoms (N3/C6/C7 and N4/C13/C14) inclined to the pyridine rings (N1/C1–C5 and N2/C8–C12) by 4.5 (2) and 1.4 (2)°, respectively. In the 2-nitrobenzoate anions the carboxyl groups (O3/O4/C15 and O5/O6/C28) are inclined to the respective benzene rings (C16–C21 and C22–C27) by 77.1 (3) and 75.8 (2)°. The nitro groups (O1/O2/N5 and O7/O8/N6) are inclined to their respective benzene rings by 20.0 (3) and 20.9 (3)°.In the crystal, the dihedral angle between the two pyridine rings (N1/C1–C5 and N2/C8–C12) is 5.16 (9)°, while the benzene rings (C16–C21 and C22–C27) form a dihedral angle of 19.56 (9)°. The anions are linked via O—H···O hydrogen bonds involving the water molecules, forming chains along [100]; Table 1 and Fig. 2. The cations are linked to these chains by N—H···O hydrogen bonds (Table 1). The chains are linked via C—H···O hydrogen bonds and π–π interactions, forming a three-dimensional structure [Cg1···Cg1i = 3.851 (1); Cg2···Cg2ii = 3.656 (1); Cg3···Cg3iii = 3.617 (1) Å; Cg1, Cg2, and Cg3 are the centroids of rings N1/C1–C5, N2/C8–C12, and C16–C21, respectively; symmetry codes: (i) -x+2, -y+1, -z+2; (ii) -x+2, -y+3, -z+1; (iii) -x+2, -y+2, -z+2]. What is the role of the C—H···π interactions?
A search of the Cambridge Structural Database (Version 5.35, last update May 2014; Allen, 2002) of salts including benzoate anions and the cation 4-dimethylaminopyridinium yielded 15 hits. Three of these salts have as anions 2,4-dinitrobenzoate, 3,4-dinitrobenzoate and 3,5-dinitrobenzoate (KOBMAP, KOBNAQ, and KOBNOE, respectively; Hosomi et al., 2000). They were studied for their potential SHG properties; only the 3,5-dintrobenzoate salt crystallized in a non-centrosymmetric space group.
4-Dimethylaminopyridine (2.442 g, 1 mmol) and 2-nitrobenzoic acid (3.342 g, 1mmol) were dissolved in 50 ml of hot ethanol as a solvent. The mixture was stirred well for 8 hours to give a homogeneous solution and is was then allowed to evaporate in air at room temperature. Within a few days, small colourless block-like crystals of the title salt were formed.
Crystal data, data collection and structure
details are summarized in Table 2. Water H atoms and the pyridinium N atoms were located from difference Fourier maps and refined with distance restraints. O—H = 0.82 (1) and N—H = 0.88 (1) Å, with Uiso(H) = 1.5Ueq(O) for the water H atoms. The C-bound H atoms were positioned geometrically and refined using a riding model: C—H = 0.93–0.96 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(C) for other H atoms.Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXS97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title salt, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. A view along the a axis of the crystal packing of the title salt. Hydrogen bonds are shown as dashed lines (see Table 1 for details; H atoms not involved in hydrogen bonding have been omitted for clarity). |
2C7H11N2+·2C7H4NO4−·3H2O | Z = 2 |
Mr = 632.63 | F(000) = 668 |
Triclinic, P1 | Dx = 1.351 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.6163 (4) Å | Cell parameters from 668 reflections |
b = 12.7215 (7) Å | θ = 1.2–26.5° |
c = 17.3478 (9) Å | µ = 0.11 mm−1 |
α = 108.238 (1)° | T = 296 K |
β = 92.247 (2)° | Block, colourless |
γ = 101.512 (1)° | 0.28 × 0.24 × 0.20 mm |
V = 1554.93 (14) Å3 |
Bruker APEXII CCD diffractometer | 6426 independent reflections |
Radiation source: fine-focus sealed tube | 5126 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ω and ϕ scan | θmax = 26.5°, θmin = 1.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→9 |
Tmin = 0.971, Tmax = 0.979 | k = −15→15 |
24031 measured reflections | l = −21→21 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.049 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.154 | w = 1/[σ2(Fo2) + (0.074P)2 + 0.5049P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
6426 reflections | Δρmax = 0.33 e Å−3 |
437 parameters | Δρmin = −0.36 e Å−3 |
9 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.088 (5) |
2C7H11N2+·2C7H4NO4−·3H2O | γ = 101.512 (1)° |
Mr = 632.63 | V = 1554.93 (14) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.6163 (4) Å | Mo Kα radiation |
b = 12.7215 (7) Å | µ = 0.11 mm−1 |
c = 17.3478 (9) Å | T = 296 K |
α = 108.238 (1)° | 0.28 × 0.24 × 0.20 mm |
β = 92.247 (2)° |
Bruker APEXII CCD diffractometer | 6426 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 5126 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.979 | Rint = 0.029 |
24031 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 9 restraints |
wR(F2) = 0.154 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.33 e Å−3 |
6426 reflections | Δρmin = −0.36 e Å−3 |
437 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.8708 (2) | 0.46302 (15) | 1.12324 (10) | 0.0488 (4) | |
H1 | 0.9041 | 0.4227 | 1.1556 | 0.059* | |
C2 | 0.7934 (2) | 0.40558 (14) | 1.04589 (10) | 0.0460 (4) | |
H2 | 0.7728 | 0.3268 | 1.0263 | 0.055* | |
C3 | 0.7434 (2) | 0.46462 (13) | 0.99459 (9) | 0.0409 (3) | |
C4 | 0.7752 (2) | 0.58414 (14) | 1.03061 (11) | 0.0483 (4) | |
H4 | 0.7426 | 0.6276 | 1.0005 | 0.058* | |
C5 | 0.8525 (3) | 0.63547 (15) | 1.10852 (11) | 0.0527 (4) | |
H5 | 0.8727 | 0.7141 | 1.1309 | 0.063* | |
C6 | 0.6297 (3) | 0.28730 (17) | 0.88249 (12) | 0.0664 (5) | |
H6A | 0.7376 | 0.2625 | 0.8660 | 0.100* | |
H6B | 0.5412 | 0.2632 | 0.8359 | 0.100* | |
H6C | 0.5836 | 0.2548 | 0.9227 | 0.100* | |
C7 | 0.6312 (3) | 0.47267 (19) | 0.86320 (12) | 0.0650 (5) | |
H7A | 0.5391 | 0.5126 | 0.8832 | 0.097* | |
H7B | 0.5903 | 0.4202 | 0.8092 | 0.097* | |
H7C | 0.7384 | 0.5261 | 0.8616 | 0.097* | |
C8 | 0.8222 (3) | 1.47002 (15) | 0.57602 (11) | 0.0523 (4) | |
H8 | 0.8505 | 1.4290 | 0.6089 | 0.063* | |
C9 | 0.7602 (2) | 1.41427 (15) | 0.49641 (11) | 0.0500 (4) | |
H9 | 0.7461 | 1.3359 | 0.4755 | 0.060* | |
C10 | 0.7169 (2) | 1.47433 (14) | 0.44473 (10) | 0.0446 (4) | |
C11 | 0.7429 (3) | 1.59337 (15) | 0.48165 (11) | 0.0537 (4) | |
H11 | 0.7176 | 1.6377 | 0.4508 | 0.064* | |
C12 | 0.8050 (3) | 1.64289 (16) | 0.56213 (12) | 0.0573 (5) | |
H12 | 0.8210 | 1.7211 | 0.5855 | 0.069* | |
C13 | 0.6263 (4) | 1.29817 (19) | 0.32983 (13) | 0.0759 (6) | |
H13A | 0.7383 | 1.2756 | 0.3343 | 0.114* | |
H13B | 0.5807 | 1.2754 | 0.2733 | 0.114* | |
H13C | 0.5407 | 1.2625 | 0.3583 | 0.114* | |
C14 | 0.6142 (4) | 1.4840 (2) | 0.31276 (13) | 0.0776 (7) | |
H14A | 0.5189 | 1.5211 | 0.3325 | 0.116* | |
H14B | 0.5767 | 1.4324 | 0.2583 | 0.116* | |
H14C | 0.7195 | 1.5398 | 0.3126 | 0.116* | |
C15 | 0.9883 (3) | 0.77742 (14) | 0.79236 (10) | 0.0495 (4) | |
C16 | 0.9024 (2) | 0.83033 (12) | 0.93876 (10) | 0.0403 (3) | |
C17 | 0.9453 (2) | 0.87021 (13) | 1.02242 (10) | 0.0459 (4) | |
H17 | 0.8552 | 0.8706 | 1.0571 | 0.055* | |
C18 | 1.1237 (3) | 0.90929 (14) | 1.05345 (10) | 0.0513 (4) | |
H18 | 1.1552 | 0.9363 | 1.1096 | 0.062* | |
C19 | 1.2561 (2) | 0.90851 (14) | 1.00132 (12) | 0.0526 (4) | |
H19 | 1.3767 | 0.9347 | 1.0226 | 0.063* | |
C20 | 1.2105 (2) | 0.86906 (14) | 0.91776 (11) | 0.0489 (4) | |
H20 | 1.3011 | 0.8699 | 0.8834 | 0.059* | |
C21 | 1.0315 (2) | 0.82816 (12) | 0.88416 (9) | 0.0410 (4) | |
C22 | 0.8177 (2) | 1.16928 (13) | 0.58212 (10) | 0.0456 (4) | |
C23 | 0.9267 (3) | 1.12931 (18) | 0.52210 (14) | 0.0671 (5) | |
H23 | 1.0470 | 1.1331 | 0.5369 | 0.081* | |
C24 | 0.8576 (4) | 1.0839 (2) | 0.44030 (14) | 0.0823 (7) | |
H24 | 0.9322 | 1.0573 | 0.4010 | 0.099* | |
C25 | 0.6807 (4) | 1.07774 (18) | 0.41684 (13) | 0.0755 (7) | |
H25 | 0.6360 | 1.0473 | 0.3619 | 0.091* | |
C26 | 0.5713 (3) | 1.11601 (15) | 0.47379 (12) | 0.0613 (5) | |
H26 | 0.4514 | 1.1123 | 0.4583 | 0.074* | |
C27 | 0.6400 (2) | 1.16086 (13) | 0.55545 (10) | 0.0456 (4) | |
C28 | 0.9034 (2) | 1.22402 (14) | 0.66958 (11) | 0.0503 (4) | |
N1 | 0.9009 (2) | 0.57649 (13) | 1.15435 (9) | 0.0512 (4) | |
N2 | 0.8436 (2) | 1.58265 (13) | 0.60863 (9) | 0.0541 (4) | |
N3 | 0.6704 (2) | 0.41060 (13) | 0.91725 (8) | 0.0511 (4) | |
N4 | 0.6558 (2) | 1.42142 (13) | 0.36576 (9) | 0.0562 (4) | |
N5 | 0.7108 (2) | 0.79252 (13) | 0.90781 (10) | 0.0541 (4) | |
N6 | 0.5164 (2) | 1.19959 (14) | 0.61527 (12) | 0.0626 (4) | |
O1 | 0.6036 (2) | 0.76776 (17) | 0.95241 (13) | 0.0902 (5) | |
O2 | 0.6658 (2) | 0.7890 (2) | 0.83978 (12) | 0.1068 (7) | |
O3 | 0.9533 (3) | 0.67136 (11) | 0.76561 (8) | 0.0799 (5) | |
O4 | 0.9988 (2) | 0.84108 (12) | 0.75059 (8) | 0.0675 (4) | |
O5 | 0.9399 (2) | 1.16209 (12) | 0.70715 (10) | 0.0762 (5) | |
O6 | 0.9380 (3) | 1.32923 (11) | 0.69509 (9) | 0.0787 (5) | |
O7 | 0.5517 (3) | 1.2051 (2) | 0.68427 (11) | 0.1237 (9) | |
O8 | 0.3773 (3) | 1.21786 (19) | 0.59186 (15) | 0.1076 (7) | |
O9 | 0.1837 (2) | 1.07159 (15) | 0.78781 (11) | 0.0777 (4) | |
O10 | 0.7405 (2) | 0.93838 (16) | 0.68527 (13) | 0.0874 (5) | |
O11 | 0.5046 (3) | 1.0003 (3) | 0.81462 (15) | 0.1128 (7) | |
H9A | 0.141 (6) | 1.103 (3) | 0.758 (2) | 0.169* | |
H9B | 0.087 (2) | 1.020 (2) | 0.777 (3) | 0.169* | |
H10A | 0.814 (5) | 0.917 (4) | 0.709 (2) | 0.169* | |
H10B | 0.803 (5) | 1.0021 (18) | 0.692 (3) | 0.169* | |
H11A | 0.425 (4) | 1.026 (4) | 0.798 (3) | 0.169* | |
H11B | 0.566 (5) | 0.996 (4) | 0.7735 (18) | 0.169* | |
H1A | 0.957 (3) | 0.6117 (18) | 1.2044 (8) | 0.074 (7)* | |
H2A | 0.887 (3) | 1.6140 (18) | 0.6610 (7) | 0.073 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0534 (10) | 0.0527 (9) | 0.0438 (9) | 0.0111 (7) | −0.0004 (7) | 0.0217 (7) |
C2 | 0.0536 (9) | 0.0411 (8) | 0.0446 (9) | 0.0107 (7) | 0.0017 (7) | 0.0161 (7) |
C3 | 0.0414 (8) | 0.0448 (8) | 0.0373 (8) | 0.0095 (6) | 0.0039 (6) | 0.0146 (7) |
C4 | 0.0590 (10) | 0.0434 (8) | 0.0462 (9) | 0.0116 (7) | 0.0013 (7) | 0.0203 (7) |
C5 | 0.0632 (11) | 0.0398 (8) | 0.0501 (10) | 0.0042 (7) | 0.0004 (8) | 0.0130 (7) |
C6 | 0.0867 (15) | 0.0554 (11) | 0.0452 (10) | 0.0093 (10) | −0.0065 (10) | 0.0057 (8) |
C7 | 0.0803 (14) | 0.0753 (13) | 0.0431 (10) | 0.0207 (11) | −0.0041 (9) | 0.0240 (9) |
C8 | 0.0630 (11) | 0.0519 (10) | 0.0439 (9) | 0.0088 (8) | −0.0013 (8) | 0.0218 (8) |
C9 | 0.0601 (10) | 0.0428 (8) | 0.0456 (9) | 0.0067 (7) | −0.0027 (8) | 0.0164 (7) |
C10 | 0.0451 (8) | 0.0481 (9) | 0.0395 (8) | 0.0057 (7) | 0.0012 (7) | 0.0163 (7) |
C11 | 0.0666 (11) | 0.0484 (9) | 0.0500 (10) | 0.0142 (8) | 0.0005 (8) | 0.0216 (8) |
C12 | 0.0720 (12) | 0.0443 (9) | 0.0517 (10) | 0.0132 (8) | 0.0040 (9) | 0.0106 (8) |
C13 | 0.0970 (17) | 0.0637 (13) | 0.0493 (11) | 0.0072 (11) | −0.0159 (11) | 0.0035 (9) |
C14 | 0.0997 (17) | 0.0870 (16) | 0.0473 (11) | 0.0099 (13) | −0.0081 (11) | 0.0322 (11) |
C15 | 0.0684 (11) | 0.0442 (9) | 0.0377 (8) | 0.0162 (8) | 0.0020 (8) | 0.0144 (7) |
C16 | 0.0472 (8) | 0.0311 (7) | 0.0436 (8) | 0.0097 (6) | 0.0005 (7) | 0.0139 (6) |
C17 | 0.0623 (10) | 0.0373 (8) | 0.0416 (9) | 0.0152 (7) | 0.0094 (7) | 0.0147 (6) |
C18 | 0.0741 (12) | 0.0386 (8) | 0.0375 (8) | 0.0126 (8) | −0.0067 (8) | 0.0090 (7) |
C19 | 0.0512 (10) | 0.0431 (9) | 0.0580 (11) | 0.0075 (7) | −0.0093 (8) | 0.0125 (8) |
C20 | 0.0505 (9) | 0.0450 (9) | 0.0516 (10) | 0.0120 (7) | 0.0071 (7) | 0.0154 (7) |
C21 | 0.0544 (9) | 0.0314 (7) | 0.0381 (8) | 0.0117 (6) | 0.0023 (7) | 0.0114 (6) |
C22 | 0.0553 (9) | 0.0356 (8) | 0.0429 (9) | 0.0062 (7) | −0.0054 (7) | 0.0125 (7) |
C23 | 0.0645 (12) | 0.0624 (12) | 0.0701 (13) | 0.0136 (10) | 0.0101 (10) | 0.0157 (10) |
C24 | 0.117 (2) | 0.0663 (14) | 0.0559 (13) | 0.0153 (13) | 0.0275 (13) | 0.0100 (11) |
C25 | 0.118 (2) | 0.0532 (11) | 0.0406 (10) | −0.0022 (12) | −0.0100 (12) | 0.0109 (9) |
C26 | 0.0772 (13) | 0.0440 (9) | 0.0540 (11) | −0.0037 (9) | −0.0243 (10) | 0.0182 (8) |
C27 | 0.0566 (9) | 0.0342 (7) | 0.0428 (9) | 0.0042 (7) | −0.0085 (7) | 0.0135 (6) |
C28 | 0.0553 (10) | 0.0452 (9) | 0.0476 (9) | 0.0046 (7) | −0.0131 (8) | 0.0175 (7) |
N1 | 0.0546 (8) | 0.0524 (8) | 0.0401 (8) | 0.0022 (7) | −0.0065 (6) | 0.0134 (6) |
N2 | 0.0665 (10) | 0.0548 (9) | 0.0360 (8) | 0.0098 (7) | 0.0001 (7) | 0.0107 (7) |
N3 | 0.0630 (9) | 0.0512 (8) | 0.0380 (7) | 0.0131 (7) | −0.0022 (6) | 0.0137 (6) |
N4 | 0.0667 (10) | 0.0580 (9) | 0.0404 (8) | 0.0069 (7) | −0.0061 (7) | 0.0172 (7) |
N5 | 0.0502 (8) | 0.0475 (8) | 0.0660 (10) | 0.0103 (6) | −0.0011 (7) | 0.0220 (7) |
N6 | 0.0550 (9) | 0.0560 (9) | 0.0715 (11) | 0.0113 (7) | −0.0042 (8) | 0.0156 (8) |
O1 | 0.0539 (9) | 0.1180 (14) | 0.1136 (14) | 0.0119 (9) | 0.0183 (9) | 0.0619 (12) |
O2 | 0.0651 (10) | 0.172 (2) | 0.0772 (12) | 0.0044 (11) | −0.0220 (9) | 0.0492 (13) |
O3 | 0.1489 (16) | 0.0448 (7) | 0.0383 (7) | 0.0178 (8) | −0.0128 (8) | 0.0077 (6) |
O4 | 0.1011 (11) | 0.0583 (8) | 0.0494 (7) | 0.0185 (7) | 0.0010 (7) | 0.0271 (6) |
O5 | 0.0974 (11) | 0.0614 (8) | 0.0711 (9) | 0.0069 (8) | −0.0274 (8) | 0.0346 (7) |
O6 | 0.1240 (13) | 0.0446 (7) | 0.0532 (8) | 0.0023 (7) | −0.0385 (8) | 0.0119 (6) |
O7 | 0.0940 (14) | 0.211 (3) | 0.0547 (11) | 0.0546 (15) | 0.0089 (9) | 0.0146 (13) |
O8 | 0.0775 (12) | 0.1227 (16) | 0.1424 (18) | 0.0515 (11) | 0.0068 (12) | 0.0535 (14) |
O9 | 0.0827 (11) | 0.0792 (11) | 0.0707 (10) | 0.0185 (8) | −0.0039 (8) | 0.0252 (8) |
O10 | 0.0776 (11) | 0.0778 (11) | 0.1062 (14) | 0.0037 (9) | −0.0192 (10) | 0.0413 (10) |
O11 | 0.0952 (15) | 0.153 (2) | 0.0994 (16) | 0.0310 (14) | 0.0013 (12) | 0.0531 (15) |
C1—N1 | 1.341 (2) | C15—O3 | 1.250 (2) |
C1—C2 | 1.355 (2) | C15—C21 | 1.514 (2) |
C1—H1 | 0.9300 | C16—C17 | 1.381 (2) |
C2—C3 | 1.416 (2) | C16—C21 | 1.390 (2) |
C2—H2 | 0.9300 | C16—N5 | 1.464 (2) |
C3—N3 | 1.339 (2) | C17—C18 | 1.374 (3) |
C3—C4 | 1.417 (2) | C17—H17 | 0.9300 |
C4—C5 | 1.354 (2) | C18—C19 | 1.380 (3) |
C4—H4 | 0.9300 | C18—H18 | 0.9300 |
C5—N1 | 1.338 (2) | C19—C20 | 1.382 (3) |
C5—H5 | 0.9300 | C19—H19 | 0.9300 |
C6—N3 | 1.456 (2) | C20—C21 | 1.391 (2) |
C6—H6A | 0.9600 | C20—H20 | 0.9300 |
C6—H6B | 0.9600 | C22—C27 | 1.385 (2) |
C6—H6C | 0.9600 | C22—C23 | 1.392 (3) |
C7—N3 | 1.459 (2) | C22—C28 | 1.514 (2) |
C7—H7A | 0.9600 | C23—C24 | 1.390 (3) |
C7—H7B | 0.9600 | C23—H23 | 0.9300 |
C7—H7C | 0.9600 | C24—C25 | 1.372 (4) |
C8—N2 | 1.339 (2) | C24—H24 | 0.9300 |
C8—C9 | 1.355 (2) | C25—C26 | 1.354 (3) |
C8—H8 | 0.9300 | C25—H25 | 0.9300 |
C9—C10 | 1.415 (2) | C26—C27 | 1.387 (2) |
C9—H9 | 0.9300 | C26—H26 | 0.9300 |
C10—N4 | 1.339 (2) | C27—N6 | 1.465 (3) |
C10—C11 | 1.416 (2) | C28—O5 | 1.232 (2) |
C11—C12 | 1.360 (3) | C28—O6 | 1.239 (2) |
C11—H11 | 0.9300 | N1—H1A | 0.886 (10) |
C12—N2 | 1.335 (2) | N2—H2A | 0.890 (10) |
C12—H12 | 0.9300 | N5—O2 | 1.201 (2) |
C13—N4 | 1.461 (3) | N5—O1 | 1.210 (2) |
C13—H13A | 0.9600 | N6—O7 | 1.193 (2) |
C13—H13B | 0.9600 | N6—O8 | 1.211 (2) |
C13—H13C | 0.9600 | O9—H9A | 0.833 (10) |
C14—N4 | 1.455 (3) | O9—H9B | 0.850 (10) |
C14—H14A | 0.9600 | O10—H10A | 0.823 (10) |
C14—H14B | 0.9600 | O10—H10B | 0.824 (10) |
C14—H14C | 0.9600 | O11—H11A | 0.826 (10) |
C15—O4 | 1.238 (2) | O11—H11B | 0.861 (10) |
N1—C1—C2 | 121.77 (15) | C21—C16—N5 | 119.65 (15) |
N1—C1—H1 | 119.1 | C18—C17—C16 | 118.75 (16) |
C2—C1—H1 | 119.1 | C18—C17—H17 | 120.6 |
C1—C2—C3 | 120.51 (15) | C16—C17—H17 | 120.6 |
C1—C2—H2 | 119.7 | C17—C18—C19 | 120.07 (16) |
C3—C2—H2 | 119.7 | C17—C18—H18 | 120.0 |
N3—C3—C2 | 121.99 (15) | C19—C18—H18 | 120.0 |
N3—C3—C4 | 122.39 (15) | C18—C19—C20 | 120.39 (17) |
C2—C3—C4 | 115.62 (14) | C18—C19—H19 | 119.8 |
C5—C4—C3 | 120.42 (15) | C20—C19—H19 | 119.8 |
C5—C4—H4 | 119.8 | C19—C20—C21 | 121.14 (16) |
C3—C4—H4 | 119.8 | C19—C20—H20 | 119.4 |
N1—C5—C4 | 121.97 (16) | C21—C20—H20 | 119.4 |
N1—C5—H5 | 119.0 | C16—C21—C20 | 116.66 (15) |
C4—C5—H5 | 119.0 | C16—C21—C15 | 123.84 (15) |
N3—C6—H6A | 109.5 | C20—C21—C15 | 119.37 (15) |
N3—C6—H6B | 109.5 | C27—C22—C23 | 116.35 (17) |
H6A—C6—H6B | 109.5 | C27—C22—C28 | 125.37 (16) |
N3—C6—H6C | 109.5 | C23—C22—C28 | 118.17 (17) |
H6A—C6—H6C | 109.5 | C24—C23—C22 | 120.7 (2) |
H6B—C6—H6C | 109.5 | C24—C23—H23 | 119.7 |
N3—C7—H7A | 109.5 | C22—C23—H23 | 119.7 |
N3—C7—H7B | 109.5 | C25—C24—C23 | 120.8 (2) |
H7A—C7—H7B | 109.5 | C25—C24—H24 | 119.6 |
N3—C7—H7C | 109.5 | C23—C24—H24 | 119.6 |
H7A—C7—H7C | 109.5 | C26—C25—C24 | 119.88 (19) |
H7B—C7—H7C | 109.5 | C26—C25—H25 | 120.1 |
N2—C8—C9 | 121.68 (16) | C24—C25—H25 | 120.1 |
N2—C8—H8 | 119.2 | C25—C26—C27 | 119.3 (2) |
C9—C8—H8 | 119.2 | C25—C26—H26 | 120.3 |
C8—C9—C10 | 120.53 (16) | C27—C26—H26 | 120.3 |
C8—C9—H9 | 119.7 | C22—C27—C26 | 122.93 (18) |
C10—C9—H9 | 119.7 | C22—C27—N6 | 119.45 (15) |
N4—C10—C9 | 121.79 (16) | C26—C27—N6 | 117.62 (17) |
N4—C10—C11 | 122.36 (15) | O5—C28—O6 | 126.17 (16) |
C9—C10—C11 | 115.85 (15) | O5—C28—C22 | 118.31 (15) |
C12—C11—C10 | 120.03 (16) | O6—C28—C22 | 115.42 (14) |
C12—C11—H11 | 120.0 | C5—N1—C1 | 119.69 (15) |
C10—C11—H11 | 120.0 | C5—N1—H1A | 120.8 (16) |
N2—C12—C11 | 122.02 (17) | C1—N1—H1A | 119.5 (15) |
N2—C12—H12 | 119.0 | C12—N2—C8 | 119.89 (15) |
C11—C12—H12 | 119.0 | C12—N2—H2A | 123.1 (15) |
N4—C13—H13A | 109.5 | C8—N2—H2A | 117.0 (15) |
N4—C13—H13B | 109.5 | C3—N3—C6 | 121.71 (15) |
H13A—C13—H13B | 109.5 | C3—N3—C7 | 121.54 (15) |
N4—C13—H13C | 109.5 | C6—N3—C7 | 116.73 (15) |
H13A—C13—H13C | 109.5 | C10—N4—C14 | 121.44 (16) |
H13B—C13—H13C | 109.5 | C10—N4—C13 | 121.11 (15) |
N4—C14—H14A | 109.5 | C14—N4—C13 | 117.45 (16) |
N4—C14—H14B | 109.5 | O2—N5—O1 | 122.49 (18) |
H14A—C14—H14B | 109.5 | O2—N5—C16 | 118.90 (16) |
N4—C14—H14C | 109.5 | O1—N5—C16 | 118.60 (17) |
H14A—C14—H14C | 109.5 | O7—N6—O8 | 122.5 (2) |
H14B—C14—H14C | 109.5 | O7—N6—C27 | 118.58 (18) |
O4—C15—O3 | 125.90 (16) | O8—N6—C27 | 118.8 (2) |
O4—C15—C21 | 119.44 (15) | H9A—O9—H9B | 91 (4) |
O3—C15—C21 | 114.55 (14) | H10A—O10—H10B | 96 (4) |
C17—C16—C21 | 123.00 (15) | H11A—O11—H11B | 96 (4) |
C17—C16—N5 | 117.32 (15) | ||
N1—C1—C2—C3 | 0.9 (3) | C24—C25—C26—C27 | −0.1 (3) |
C1—C2—C3—N3 | 178.43 (16) | C23—C22—C27—C26 | −0.3 (2) |
C1—C2—C3—C4 | −1.8 (2) | C28—C22—C27—C26 | 175.91 (15) |
N3—C3—C4—C5 | −178.69 (17) | C23—C22—C27—N6 | 179.05 (16) |
C2—C3—C4—C5 | 1.6 (2) | C28—C22—C27—N6 | −4.7 (2) |
C3—C4—C5—N1 | −0.3 (3) | C25—C26—C27—C22 | 0.4 (3) |
N2—C8—C9—C10 | 0.4 (3) | C25—C26—C27—N6 | −179.00 (17) |
C8—C9—C10—N4 | 179.85 (17) | C27—C22—C28—O5 | 108.3 (2) |
C8—C9—C10—C11 | 0.1 (3) | C23—C22—C28—O5 | −75.5 (2) |
N4—C10—C11—C12 | 179.88 (18) | C27—C22—C28—O6 | −75.0 (2) |
C9—C10—C11—C12 | −0.4 (3) | C23—C22—C28—O6 | 101.1 (2) |
C10—C11—C12—N2 | 0.2 (3) | C4—C5—N1—C1 | −0.7 (3) |
C21—C16—C17—C18 | −0.2 (2) | C2—C1—N1—C5 | 0.4 (3) |
N5—C16—C17—C18 | −178.21 (13) | C11—C12—N2—C8 | 0.3 (3) |
C16—C17—C18—C19 | 0.2 (2) | C9—C8—N2—C12 | −0.6 (3) |
C17—C18—C19—C20 | 0.3 (3) | C2—C3—N3—C6 | 3.1 (3) |
C18—C19—C20—C21 | −0.8 (3) | C4—C3—N3—C6 | −176.64 (17) |
C17—C16—C21—C20 | −0.2 (2) | C2—C3—N3—C7 | −175.62 (17) |
N5—C16—C21—C20 | 177.74 (13) | C4—C3—N3—C7 | 4.6 (3) |
C17—C16—C21—C15 | 175.61 (14) | C9—C10—N4—C14 | −179.02 (19) |
N5—C16—C21—C15 | −6.5 (2) | C11—C10—N4—C14 | 0.7 (3) |
C19—C20—C21—C16 | 0.7 (2) | C9—C10—N4—C13 | 1.7 (3) |
C19—C20—C21—C15 | −175.32 (15) | C11—C10—N4—C13 | −178.59 (19) |
O4—C15—C21—C16 | 107.6 (2) | C17—C16—N5—O2 | 158.56 (19) |
O3—C15—C21—C16 | −75.9 (2) | C21—C16—N5—O2 | −19.5 (3) |
O4—C15—C21—C20 | −76.7 (2) | C17—C16—N5—O1 | −20.3 (2) |
O3—C15—C21—C20 | 99.8 (2) | C21—C16—N5—O1 | 161.69 (17) |
C27—C22—C23—C24 | 0.0 (3) | C22—C27—N6—O7 | −22.2 (3) |
C28—C22—C23—C24 | −176.52 (18) | C26—C27—N6—O7 | 157.2 (2) |
C22—C23—C24—C25 | 0.2 (3) | C22—C27—N6—O8 | 162.33 (19) |
C23—C24—C25—C26 | −0.2 (3) | C26—C27—N6—O8 | −18.2 (3) |
Cg1, Cg3 and Cg4 are the centroids of rings N1/C1–C5, C16–C21, and C22–C27, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O6i | 0.89 (2) | 1.75 (2) | 2.639 (2) | 175 (2) |
O9—H9A···O5ii | 0.84 (4) | 2.11 (4) | 2.896 (2) | 156 (4) |
O10—H10A···O4 | 0.82 (4) | 2.08 (4) | 2.892 (2) | 170 (4) |
O10—H10B···O5 | 0.82 (3) | 2.02 (3) | 2.847 (3) | 176 (4) |
O11—H11A···O9 | 0.83 (4) | 2.05 (3) | 2.841 (3) | 160 (4) |
O11—H11B···O10 | 0.86 (4) | 2.12 (4) | 2.943 (3) | 160 (4) |
C1—H1···O3iii | 0.93 | 2.43 | 3.348 (2) | 169 |
C4—H4···O1 | 0.93 | 2.57 | 3.474 (3) | 164 |
C6—H6B···O7iv | 0.96 | 2.51 | 3.258 (3) | 135 |
C8—H8···O6 | 0.93 | 2.40 | 3.325 (3) | 177 |
C23—H23···O8v | 0.93 | 2.55 | 3.434 (3) | 160 |
C2—H2···Cg3iii | 0.93 | 2.96 | 3.7481 (19) | 144 |
C7—H7A···Cg1vi | 0.93 | 2.85 | 3.661 (2) | 142 |
C9—H9···Cg4 | 0.93 | 2.86 | 3.702 (2) | 151 |
Symmetry codes: (i) −x+2, −y+2, −z+2; (ii) x−1, y, z; (iii) −x+2, −y+1, −z+2; (iv) x, y−1, z; (v) x+1, y, z; (vi) −x+1, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | 2C7H11N2+·2C7H4NO4−·3H2O |
Mr | 632.63 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 7.6163 (4), 12.7215 (7), 17.3478 (9) |
α, β, γ (°) | 108.238 (1), 92.247 (2), 101.512 (1) |
V (Å3) | 1554.93 (14) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.28 × 0.24 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.971, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 24031, 6426, 5126 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.627 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.154, 1.04 |
No. of reflections | 6426 |
No. of parameters | 437 |
No. of restraints | 9 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.36 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXL97 (Sheldrick, 2008), SHELXS97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1, Cg3 and Cg4 are the centroids of rings N1/C1–C5, C16–C21, and C22–C27, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O6i | 0.888 (15) | 1.754 (15) | 2.639 (2) | 175 (2) |
O9—H9A···O5ii | 0.84 (4) | 2.11 (4) | 2.896 (2) | 156 (4) |
O10—H10A···O4 | 0.82 (4) | 2.08 (4) | 2.892 (2) | 170 (4) |
O10—H10B···O5 | 0.82 (3) | 2.02 (3) | 2.847 (3) | 176 (4) |
O11—H11A···O9 | 0.83 (4) | 2.05 (3) | 2.841 (3) | 160 (4) |
O11—H11B···O10 | 0.86 (4) | 2.12 (4) | 2.943 (3) | 160 (4) |
C1—H1···O3iii | 0.93 | 2.43 | 3.348 (2) | 169 |
C4—H4···O1 | 0.93 | 2.57 | 3.474 (3) | 164 |
C6—H6B···O7iv | 0.96 | 2.51 | 3.258 (3) | 135 |
C8—H8···O6 | 0.93 | 2.40 | 3.325 (3) | 177 |
C23—H23···O8v | 0.93 | 2.55 | 3.434 (3) | 160 |
C2—H2···Cg3iii | 0.93 | 2.96 | 3.7481 (19) | 144 |
C7—H7A···Cg1vi | 0.93 | 2.85 | 3.661 (2) | 142 |
C9—H9···Cg4 | 0.93 | 2.86 | 3.702 (2) | 151 |
Symmetry codes: (i) −x+2, −y+2, −z+2; (ii) x−1, y, z; (iii) −x+2, −y+1, −z+2; (iv) x, y−1, z; (v) x+1, y, z; (vi) −x+1, −y+1, −z+2. |
Acknowledgements
The authors are grateful to T. Srinivasan, CAS in Crystallography and Biophysics, University of Madras, Chennai 600 025, India, for the X-ray data collection.
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