research communications
μ2-sarcosinato-κ3O,N:O′)copper(II)]
of anhydrous poly[bis(aDepartment of Chemistry, Howard University, 525 College Street NW, Washington, DC 20059, USA, and bDepartment of Chemistry, The Catholic University of America, 620 Michigan Ave., N.E., Washington, DC 20064, USA
*Correspondence e-mail: rbutcher99@yahoo.com
The title compound, [Cu(C3H6NO2)2]n, is a bis-complex of the anion of sarcosine (N-methylglycine). The consists of a copper(II) ion, located on a center of inversion, and one molecule of the uninegative sarcosinate anion. The copper(II) ion exhibits a typical Jahn–Teller distorted [4 + 2] coordination geometry. The four shorter equatorial bonds are to the nitrogen and carboxylate O atoms of two sarcosinate anions, and the longer axial bonds are to carboxylate O atoms of neighboring complexes. The overall structure is made up from two chains formed by these longer axial Cu—O bonds, one extending parallel to [011] and the other parallel to [0-11]. Each one-dimensional array is connected by the equatorial bridging moieties to the chains on either side, creating an extended two-dimensional framework parallel to (100). There is a single intermolecular hydrogen-bonding interaction within the sheets between the amino NH group and an O atom of an adjacent molecule.
CCDC reference: 961026
1. Chemical context
The α-amino acids are essential for life as they are the building blocks of all proteins and enzymes and a great deal is known about their structures and complexes. N-Methyl amino acids, such as sarcosine, are non-proteinogenic and hence differ from the proteinogenic amino acids used in living systems in that the amino N atom is achiral in the free molecule but chiral, R or S, when bound to a metal. Examples of complexes of sarcosine that exhibit due to coordination of the amino N atom have been reported (Blount et al., 1967; Larsen et al., 1968; Prout et al., 1972). This is similar to the that is observed on the binding of reduced tripodal Schiff base complexes of metals (Brewer et al., 2014; Al-Obaidi et al., 1996). In these cases, the binding of three achiral (due to rapid inversion) amine N atoms of the free ligand to the same metal resulted in the observation of a single enantiomeric pair (RRR and SSS) or a single enantiomer (RRR or SSS) if the molecule crystallized in one of the Sohncke space groups. In these cases, the binding of an organic ligand containing three achiral N atoms to a metal resulted in a preference for correlation of the N atoms, RRR or SSS, resulting in homochiral complexes. Similarly, the reduced Schiff base complexes of the condensate of amino acids with salicylaldehyde have an energetic preference for the stereoisomer in which the of the α-C atom and the amine N atom are correlated (Koh et al., 1996).
This preference for homochirality is not always observed: the copper complex of a Schiff base condensate of tyrosine is heterochiral as is the bis-adduct of cobalt(III) with histidine (Pradeep et al., 2006; Zie et al., 2007). The present complex was investigated to determine if there was a preference for homo- (RR or SS) versus heterochirality (RS) in a M(sarcosinato)2 complex (M = divalent transition metal). Heterochirality, RS, was observed in this complex. Future work will focus on related complexes such as M′(sarcosinato)3 (M′ = trivalent transition metal) to determine if the presence of three chiral ligands bound to a single metal favors homochirality, which can serve as a method of enantiomeric separation.
2. Structural commentary
The title compound, [Cu(C3H6NO2)2]n, is a bis-complex of the sarcosinate anion with copper(II). The central metal cation is located on a center of inversion. It is six-coordinate and has a distorted octahedral [4 + 2] coordination sphere characteristic for Jahn–Teller systems. The four shorter equatorial bonds are to the amino N atom and carboxylate O atom of two sarcosinate anions (Fig. 1). The N and O atoms are trans to one another. The related [Cu(sarcosinato)2]·2H2O structure (Krishnakumar et al., 1994) is much simpler in that the two longer axial bonds are to water molecules so that there is no extended bonding to neighboring complexes. In both structures, the equatorial Cu—O and Cu—N bond lengths are very similar [Cu—O = 1.9758 (8) Å and Cu—N = 2.0046 (9) Å in the title compound, and 1.970 and 2.007 Å in the dihydrate], but the axial Cu—O distances are significantly different at 2.5451 (10) and 2.461 Å.
3. Supramolecular features
In the title compound, the individual coordination polyhedra are linked by longer axial Cu—O bonds into two chains, one extending parallel to [011] and the other parallel to [01]. The one-dimensional array is linked by equatorial bridging bonds to the chains on either side, creating an extended two-dimensional framework (Fig. 2) parallel to (100). There is a single intermolecular hydrogen-bonding interaction within the sheets between the amino NH and an carboxylate O atom of an adjacent molecule (Table 1).
4. Database survey
The structure of the zwitterionic form of sarcosine has been reported by Rodrigues et al. (2005). The structure of the copper(II) and nickel(II) complexes of this same ligand have been reported as their dihydrates by Krishnakumar et al. (1994) and Guha (1973), respectively.
5. Synthesis and crystallization
Sarcosine (N-methylglycine) was purchased from Aldrich Chemical. Sarcosine (1.87 mmol, 0.166 g) was dissolved in 0.10 M aqueous potassium hydroxide (18.7 ml, 1.87 mmol). Copper chloride dihydrate (0.468 mmol, 0.078 g) was added to the above solution and crystals of the title compound were grown by slow evaporation.
6. Refinement
Crystal data, data collection and structure . H atoms were positioned geometrically and refined using a riding model, with C—H distances of 0.93–0.99 Å, and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(C) for methyl H atoms. The H attached to N was located in a difference Fourier map and refined using a riding model, with an N—H distance of 0.93 Å and Uiso(H) = 1.2Ueq(N).
details are summarized in Table 2Supporting information
CCDC reference: 961026
10.1107/S1600536814020418/wm5056sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814020418/wm5056Isup2.hkl
The α-amino acids are essential for life as they are the building blocks of all proteins and enzymes and a great deal is known about their structures and complexes. N-Methyl amino acids, such as sarcosine, are non-proteinogenic and hence differ from the proteinogenic amino acids used in living systems in that the amino N atom is achiral in the free molecule but chiral, R or S, when bound to a metal. Examples of complexes of sarcosine that exhibit due to coordination of the amino N atom have been reported (Blount et al., 1967; Larsen et al., 1968; Prout et al., 1972). This is similar to the that is observed on the binding of reduced tripodal Schiff base complexes of metals (Brewer et al., 2014; Al-Obaidi et al., 1996). In these cases, the binding of three achiral (due to rapid inversion) amine N atoms of the free ligand to the same metal resulted in the observation of a single enantiomeric pair (RRR and SSS) or a single enantiomer (RRR or SSS) if the molecule crystallized in one of the Sohncke space groups. In these cases, the binding of an organic ligand containing three achiral N atoms to a metal resulted in a preference for correlation of the N atoms, RRR or SSS, resulting in homochiral complexes. Similarly, the reduced Schiff base complexes of the condensate of amino acids with salicylaldehyde have an energetic preference for the stereoisomer in which the of the α-C atom and the amine N atom are correlated (Koh et al., 1996).
This preference for homochirality is not always observed: the copper complex of a Schiff base condensate of tyrosine is heterochiral as is the bis-adduct of cobalt(III) with histidine (Pradeep et al., 2006; Zie et al., 2007). The present complex was investigated to determine if there was a preference for homo- (RR or SS) versus heterochirality (RS) in a M(sarcosinato)2 complex (M = divalent transition metal). Heterochirality, RS, was observed in this complex. Future work will focus on related complexes such as M'(sarcosinato)3 (M' = trivalent transition metal) to determine if the presence of three chiral ligands bound to a single metal favors homochirality, which can serve as a method of enantiomeric separation.
The title compound, [Cu(C3H6NO2)2]n, is a bis-complex of the sarcosinate anion with copper(II). The central metal cation is located on a center of inversion. It is six-coordinate and has a distorted octahedral [4+2] coordination sphere characteristic for Jahn–Teller systems. The four shorter equatorial bonds are to the amino N atom and carboxylate O atom of two sarcosinate anions (Fig. 1). The N and O atoms are trans to one another. The related [Cu(sarcosinato)2].2H2O structure (Krishnakumar et al., 1994) is much simpler in that the two longer axial bonds are to water molecules so that there is no extended bonding to neighboring complexes. In both structures, the equatorial Cu—O and Cu—N bond lengths are very similar [Cu—O = 1.9758 (8) Å and Cu—N = 2.0046 (9) Å in the title compound, and 1.970 and 2.007 Å in the dihydrate], but the axial Cu—O distances are significantly different at 2.5451 (10) and 2.461 Å.
In the title compound, the individual coordination polyhedra are linked by longer axial Cu—O bonds into two chains, one extending parallel to [011] and the other parallel to [011]. The one-dimensional array is linked by equatorial bridging bonds to the chains on either side, creating an extended two-dimensional framework (Fig. 2) parallel to (100). There is a single intermolecular hydrogen-bonding interaction within the sheets between the amino NH and an carboxylate O atom of an adjacent molecule (Table 1).
The structure of the zwitterionic form of sarcosine has been reported by Rodrigues et al. (2005). The structure of the copper(II) and nickel(II) complexes of this same ligand have been reported as their dihydrates by Krishnakumar et al. (1994) and Guha (1973), respectively.
Sarcosine (N-methylglycine) was purchased from Aldrich Chemical. Sarcosine (1.87 mmol, 0.166 g) was dissolved in 0.10 M aqueous potassium hydroxide (18.7 ml, 1.87 mmol). Copper chloride dihydrate (0.468 mmol, 0.078 g) was added to the above solution and crystals of the title compound were grown by slow evaporation.
Crystal data, data collection and structure
details are summarized in Table 2. H atoms were positioned geometrically and refined using a riding model, with C—H distances of 0.93–0.99 Å, and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(C) for methyl H atoms. The H attached to N was located in a difference Fourier map and refined using a riding model, with an N—H distance of 0.93 Å and Uiso(H) = 1.2Ueq(N).Data collection: CrysAlis PRO (Agilent, 2012); cell
CrysAlis PRO (Agilent, 2012); data reduction: CrysAlis PRO (Agilent, 2012); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Part of a chain in the title compound, with the atom-numbering scheme and atomic displacement parameters drawn at the 30% probability level. Hydrogen bonding is shown by dashed lines. [Symmetry codes: (A) 1-x, 1-y, 1-z; (B) 1-x, y-1/2, 1/2-z; (C) x, 3/2-y, 1/2+z.] | |
Fig. 2. Packing diagram of the title compound viewed along the a axis. Hydrogen bonding is shown by dashed lines. |
[Cu(C3H6NO2)2] | F(000) = 246 |
Mr = 239.72 | Dx = 1.884 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2393 reflections |
a = 7.9031 (3) Å | θ = 3.4–35.0° |
b = 5.9461 (2) Å | µ = 2.57 mm−1 |
c = 8.9907 (3) Å | T = 123 K |
β = 90.039 (3)° | Plate, dark blue |
V = 422.50 (3) Å3 | 0.51 × 0.45 × 0.12 mm |
Z = 2 |
Agilent Xcalibur Ruby Gemini diffractometer | 1768 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 1542 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
Detector resolution: 10.5081 pixels mm-1 | θmax = 35.0°, θmin = 4.1° |
ω scans | h = −12→11 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) | k = −9→8 |
Tmin = 0.478, Tmax = 1.000 | l = −14→14 |
5479 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.023 | H-atom parameters constrained |
wR(F2) = 0.061 | w = 1/[σ2(Fo2) + (0.0285P)2 + 0.0835P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
1768 reflections | Δρmax = 0.64 e Å−3 |
63 parameters | Δρmin = −0.36 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.014 (3) |
[Cu(C3H6NO2)2] | V = 422.50 (3) Å3 |
Mr = 239.72 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.9031 (3) Å | µ = 2.57 mm−1 |
b = 5.9461 (2) Å | T = 123 K |
c = 8.9907 (3) Å | 0.51 × 0.45 × 0.12 mm |
β = 90.039 (3)° |
Agilent Xcalibur Ruby Gemini diffractometer | 1768 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) | 1542 reflections with I > 2σ(I) |
Tmin = 0.478, Tmax = 1.000 | Rint = 0.025 |
5479 measured reflections |
R[F2 > 2σ(F2)] = 0.023 | 0 restraints |
wR(F2) = 0.061 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.64 e Å−3 |
1768 reflections | Δρmin = −0.36 e Å−3 |
63 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu | 0.5000 | 0.5000 | 0.5000 | 0.01076 (7) | |
O1 | 0.53710 (10) | 0.74236 (14) | 0.35326 (9) | 0.01390 (16) | |
O2 | 0.72233 (12) | 0.85036 (16) | 0.17943 (10) | 0.0221 (2) | |
N1 | 0.69539 (12) | 0.35314 (16) | 0.39628 (10) | 0.01218 (17) | |
H1A | 0.6524 | 0.2775 | 0.3140 | 0.015* | |
C1 | 0.67866 (14) | 0.72698 (19) | 0.28370 (12) | 0.01373 (19) | |
C2 | 0.79685 (14) | 0.5444 (2) | 0.34046 (13) | 0.0135 (2) | |
H2A | 0.8718 | 0.4933 | 0.2590 | 0.016* | |
H2B | 0.8685 | 0.6048 | 0.4215 | 0.016* | |
C3 | 0.79798 (15) | 0.1919 (2) | 0.48149 (14) | 0.0171 (2) | |
H3A | 0.8941 | 0.1425 | 0.4209 | 0.026* | |
H3B | 0.7284 | 0.0615 | 0.5080 | 0.026* | |
H3C | 0.8398 | 0.2642 | 0.5723 | 0.026* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu | 0.00955 (10) | 0.01254 (10) | 0.01019 (10) | 0.00153 (6) | 0.00211 (6) | 0.00253 (6) |
O1 | 0.0127 (3) | 0.0158 (4) | 0.0132 (3) | 0.0014 (3) | 0.0018 (3) | 0.0034 (3) |
O2 | 0.0215 (4) | 0.0249 (5) | 0.0199 (4) | 0.0014 (4) | 0.0060 (3) | 0.0105 (4) |
N1 | 0.0111 (4) | 0.0142 (4) | 0.0112 (4) | −0.0001 (3) | 0.0001 (3) | 0.0001 (3) |
C1 | 0.0132 (4) | 0.0152 (5) | 0.0128 (4) | −0.0016 (4) | 0.0005 (4) | 0.0008 (4) |
C2 | 0.0107 (4) | 0.0165 (5) | 0.0132 (5) | −0.0008 (4) | 0.0011 (4) | 0.0012 (4) |
C3 | 0.0161 (5) | 0.0168 (5) | 0.0183 (5) | 0.0040 (4) | 0.0003 (4) | 0.0020 (4) |
Cu—O1i | 1.9758 (8) | N1—C2 | 1.4796 (15) |
Cu—O1 | 1.9758 (8) | N1—H1A | 0.9300 |
Cu—N1i | 2.0046 (9) | C1—C2 | 1.5200 (17) |
Cu—N1 | 2.0046 (9) | C2—H2A | 0.9900 |
Cu—O2ii | 2.5451 (10) | C2—H2B | 0.9900 |
Cu—O2iii | 2.5451 (10) | C3—H3A | 0.9800 |
O1—C1 | 1.2853 (13) | C3—H3B | 0.9800 |
O2—C1 | 1.2396 (14) | C3—H3C | 0.9800 |
N1—C3 | 1.4705 (15) | ||
O1i—Cu—O1 | 180.0 | C3—N1—H1A | 107.4 |
O1i—Cu—N1i | 83.82 (3) | C2—N1—H1A | 107.4 |
O1—Cu—N1i | 96.18 (3) | Cu—N1—H1A | 107.4 |
O1i—Cu—N1 | 96.18 (3) | O2—C1—O1 | 124.66 (11) |
O1—Cu—N1 | 83.82 (3) | O2—C1—C2 | 120.34 (10) |
N1i—Cu—N1 | 180.0 | O1—C1—C2 | 114.98 (10) |
O1i—Cu—O2ii | 86.24 (3) | N1—C2—C1 | 109.26 (9) |
O1—Cu—O2ii | 93.76 (3) | N1—C2—H2A | 109.8 |
N1i—Cu—O2ii | 94.85 (3) | C1—C2—H2A | 109.8 |
N1—Cu—O2ii | 85.15 (3) | N1—C2—H2B | 109.8 |
O1i—Cu—O2iii | 93.76 (3) | C1—C2—H2B | 109.8 |
O1—Cu—O2iii | 86.24 (3) | H2A—C2—H2B | 108.3 |
N1i—Cu—O2iii | 85.15 (3) | N1—C3—H3A | 109.5 |
N1—Cu—O2iii | 94.85 (3) | N1—C3—H3B | 109.5 |
O2ii—Cu—O2iii | 180.0 | H3A—C3—H3B | 109.5 |
C1—O1—Cu | 113.74 (7) | N1—C3—H3C | 109.5 |
C3—N1—C2 | 112.28 (9) | H3A—C3—H3C | 109.5 |
C3—N1—Cu | 117.79 (7) | H3B—C3—H3C | 109.5 |
C2—N1—Cu | 103.93 (7) | ||
O1i—Cu—O1—C1 | −64 (100) | O1—Cu—N1—C2 | 29.24 (7) |
N1i—Cu—O1—C1 | 166.53 (8) | N1i—Cu—N1—C2 | 80 (100) |
N1—Cu—O1—C1 | −13.47 (8) | O2ii—Cu—N1—C2 | −65.08 (7) |
O2ii—Cu—O1—C1 | 71.23 (8) | O2iii—Cu—N1—C2 | 114.92 (7) |
O2iii—Cu—O1—C1 | −108.77 (8) | Cu—O1—C1—O2 | 174.29 (10) |
O1i—Cu—N1—C3 | −25.85 (8) | Cu—O1—C1—C2 | −6.96 (12) |
O1—Cu—N1—C3 | 154.15 (8) | C3—N1—C2—C1 | −167.81 (9) |
N1i—Cu—N1—C3 | −155 (100) | Cu—N1—C2—C1 | −39.44 (10) |
O2ii—Cu—N1—C3 | 59.83 (8) | O2—C1—C2—N1 | −148.69 (11) |
O2iii—Cu—N1—C3 | −120.17 (8) | O1—C1—C2—N1 | 32.50 (13) |
O1i—Cu—N1—C2 | −150.76 (7) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, −y+3/2, z+1/2; (iii) −x+1, y−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1iii | 0.93 | 2.13 | 2.9729 (13) | 150 |
Symmetry code: (iii) −x+1, y−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1i | 0.93 | 2.13 | 2.9729 (13) | 149.8 |
Symmetry code: (i) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C3H6NO2)2] |
Mr | 239.72 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 123 |
a, b, c (Å) | 7.9031 (3), 5.9461 (2), 8.9907 (3) |
β (°) | 90.039 (3) |
V (Å3) | 422.50 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 2.57 |
Crystal size (mm) | 0.51 × 0.45 × 0.12 |
Data collection | |
Diffractometer | Agilent Xcalibur Ruby Gemini diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2012) |
Tmin, Tmax | 0.478, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5479, 1768, 1542 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.808 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.023, 0.061, 1.08 |
No. of reflections | 1768 |
No. of parameters | 63 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.64, −0.36 |
Computer programs: CrysAlis PRO (Agilent, 2012), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Acknowledgements
RJB wishes to acknowledge the NSF–MRI program (grant No. CHE-0619278) for funds to purchase the diffractometer. GB wishes to acknowledge support of this work from NASA (NNX10AK71A)
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