organic compounds
H,3H,5H-[1,3]thiazolo[3,2-a]pyrimidine-6-carboxylate
of ethyl 5-(3-fluorophenyl)-2-[(4-fluorophenyl)methylidene]-7-methyl-3-oxo-2aDepartment of Studies in Chemistry, Bangalore University, Bangalore 560 001, Karnataka, India
*Correspondence e-mail: noorsb@rediffmail.com
In the title molecule, C23H18F2N2O3S, the pyrimidine ring is in a half-chair conformation and the 3-fluorophenyl group is in the axial position. The thiazole ring (r.m.s. deviation = 0.0252 Å) forms dihedral angles of 84.8 (7) and 9.6 (7)° with the 3-fluoro-substituted and 4-fluoro-substituted benzene rings, respectively. In the crystal, weak C—H⋯F and C—H⋯O hydrogen bonds connect molecules, forming zigzag chains along the b axis. In addition π–π stacking interactions with a centroid–centroid distance of 3.7633 (9) Å connect these chains into ladders via inversion-related 4-fluorophenyl groups.
Keywords: crystal structure; pyrimidine; thiazole; hydrogen bonds; π–π stacking interactions.
CCDC reference: 1029845
1. Related literature
For the pharmacological properties of pyrimidine derivatives, see: Alam et al. (2010); Kulakov et al. (2009); Ashok et al. (2007). For examples of compounds with weak intermolecular interactions, see: Prasanna & Guru Row (2001); Yamazaki et al. (2009). For related structures, see: Fischer et al. (2007); Zhao et al. (2011); Nagarajaiah & Begum (2011).
2. Experimental
2.1. Crystal data
|
2.3. Refinement
|
|
Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 2012).
Supporting information
CCDC reference: 1029845
10.1107/S1600536814023010/lh5711sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814023010/lh5711Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814023010/lh5711Isup3.cml
A mixture of 4-(3-fluoro-phenyl)-6-methyl-2-thioxo-1,2,3,4-tetrahydro- pyrimidine-5-carboxylic acid ethyl ester (10 mmol), chloroacetic acid (10 mmol), 4-fluorobenzaldehyde (10 mmol) and sodium acetate (1.5 g) was taken in a mixture of glacial acetic acid and acetic anhydride (25 ml; 1:1) and refluxed for 8–10 h until the TLC assay indicated that the reaction was complete. The reaction mixture was concentrated and the solid thus obtained was filtered and recrystallized from ethyl acetate to get the title compound (76% yield, mp 460 K). The compound was recrystallized by slow evaporation from dimethylformamide (DMF) solvent, yielding pale yellow single crystals suitable for X-ray diffraction studies.
The H atoms were placed at calculated positions in the riding model approximation with C—H = 0.95–1.00 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and Uiso(H) = 1.2Ueq(C) for other hydrogen atoms.
Data collection: SMART (Bruker, 1998); cell
SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 2012).Figure 1.The molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. Figure 2. Part of the showing intermolecular interactions with dotted lines. H-atoms not involved in hydrogen bonds have been excluded. |
C23H18F2N2O3S | F(000) = 912 |
Mr = 440.45 | Dx = 1.422 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4480 reflections |
a = 9.4358 (5) Å | θ = 2.1–27.0° |
b = 10.7862 (6) Å | µ = 0.20 mm−1 |
c = 20.2246 (11) Å | T = 100 K |
β = 92.159 (1)° | Block, yellow |
V = 2056.93 (19) Å3 | 0.18 × 0.16 × 0.16 mm |
Z = 4 |
Bruker SMART APEX diffractometer | 4480 independent reflections |
Radiation source: fine-focus sealed tube | 3890 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ω scans | θmax = 27.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −11→12 |
Tmin = 0.964, Tmax = 0.968 | k = −13→11 |
15631 measured reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0546P)2 + 0.9996P] where P = (Fo2 + 2Fc2)/3 |
4480 reflections | (Δ/σ)max = 0.001 |
282 parameters | Δρmax = 0.44 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C23H18F2N2O3S | V = 2056.93 (19) Å3 |
Mr = 440.45 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.4358 (5) Å | µ = 0.20 mm−1 |
b = 10.7862 (6) Å | T = 100 K |
c = 20.2246 (11) Å | 0.18 × 0.16 × 0.16 mm |
β = 92.159 (1)° |
Bruker SMART APEX diffractometer | 4480 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 3890 reflections with I > 2σ(I) |
Tmin = 0.964, Tmax = 0.968 | Rint = 0.026 |
15631 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.44 e Å−3 |
4480 reflections | Δρmin = −0.23 e Å−3 |
282 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.88687 (4) | 0.19204 (3) | 0.034764 (17) | 0.01589 (11) | |
F2 | 0.38224 (11) | −0.20262 (10) | 0.14390 (5) | 0.0344 (3) | |
N1 | 1.02387 (12) | 0.21900 (11) | −0.07291 (6) | 0.0130 (2) | |
O1 | 0.95802 (11) | 0.05123 (9) | −0.13566 (5) | 0.0168 (2) | |
O3 | 1.32012 (11) | 0.35754 (11) | −0.18945 (5) | 0.0234 (3) | |
N2 | 1.08494 (13) | 0.36112 (12) | 0.01251 (6) | 0.0178 (3) | |
F1 | 0.83639 (12) | 0.28603 (11) | −0.33642 (5) | 0.0364 (3) | |
C6 | 1.20222 (15) | 0.37625 (13) | −0.09169 (7) | 0.0168 (3) | |
C2 | 0.86191 (15) | 0.08022 (13) | −0.02757 (7) | 0.0136 (3) | |
C17 | 0.77697 (14) | −0.01947 (13) | −0.02952 (7) | 0.0145 (3) | |
H17 | 0.7813 | −0.0677 | −0.0687 | 0.017* | |
C9 | 1.01253 (15) | 0.27081 (13) | −0.01116 (7) | 0.0138 (3) | |
C11 | 0.99691 (15) | 0.34259 (14) | −0.17420 (7) | 0.0160 (3) | |
C5 | 1.10183 (15) | 0.28309 (13) | −0.12475 (7) | 0.0144 (3) | |
H5 | 1.1592 | 0.2205 | −0.1485 | 0.017* | |
C18 | 0.67908 (15) | −0.06573 (13) | 0.01880 (7) | 0.0157 (3) | |
C21 | 0.48097 (17) | −0.15811 (16) | 0.10318 (8) | 0.0240 (3) | |
C7 | 1.19145 (15) | 0.40940 (13) | −0.02781 (8) | 0.0175 (3) | |
C16 | 0.96568 (17) | 0.28569 (15) | −0.23478 (8) | 0.0202 (3) | |
H16 | 1.0110 | 0.2107 | −0.2466 | 0.024* | |
C3 | 0.94988 (14) | 0.11093 (13) | −0.08497 (7) | 0.0135 (3) | |
C20 | 0.48715 (17) | −0.20784 (15) | 0.04067 (9) | 0.0236 (3) | |
H20 | 0.4247 | −0.2726 | 0.0267 | 0.028* | |
C19 | 0.58648 (16) | −0.16121 (14) | −0.00123 (8) | 0.0195 (3) | |
H19 | 0.5921 | −0.1946 | −0.0445 | 0.023* | |
C23 | 0.67034 (16) | −0.01971 (15) | 0.08349 (8) | 0.0202 (3) | |
H23 | 0.7331 | 0.0442 | 0.0983 | 0.024* | |
C15 | 0.86709 (17) | 0.34154 (16) | −0.27702 (7) | 0.0243 (4) | |
C10 | 1.31041 (16) | 0.42857 (15) | −0.13541 (8) | 0.0235 (3) | |
O2 | 1.37971 (16) | 0.52124 (13) | −0.12605 (8) | 0.0448 (4) | |
C13 | 0.83007 (17) | 0.50531 (16) | −0.20222 (9) | 0.0266 (4) | |
H13 | 0.7836 | 0.5800 | −0.1908 | 0.032* | |
C12 | 0.92960 (16) | 0.45299 (15) | −0.15833 (8) | 0.0206 (3) | |
H12 | 0.9519 | 0.4926 | −0.1173 | 0.025* | |
C1 | 1.28965 (17) | 0.49369 (16) | 0.01043 (9) | 0.0253 (4) | |
H1A | 1.3665 | 0.5199 | −0.0177 | 0.038* | |
H1B | 1.3296 | 0.4498 | 0.0493 | 0.038* | |
H1C | 1.2373 | 0.5667 | 0.0248 | 0.038* | |
C22 | 0.57151 (17) | −0.06610 (15) | 0.12598 (8) | 0.0235 (3) | |
H22 | 0.5663 | −0.0352 | 0.1698 | 0.028* | |
C14 | 0.79808 (17) | 0.44933 (16) | −0.26257 (8) | 0.0265 (4) | |
H14 | 0.7303 | 0.4846 | −0.2930 | 0.032* | |
C8 | 1.41942 (18) | 0.39730 (18) | −0.23844 (9) | 0.0309 (4) | |
H8A | 1.5130 | 0.4160 | −0.2170 | 0.037* | |
H8B | 1.3840 | 0.4728 | −0.2615 | 0.037* | |
C4 | 1.4318 (2) | 0.29285 (19) | −0.28635 (9) | 0.0358 (4) | |
H4A | 1.4729 | 0.2205 | −0.2635 | 0.054* | |
H4B | 1.4931 | 0.3178 | −0.3221 | 0.054* | |
H4C | 1.3375 | 0.2717 | −0.3050 | 0.054* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01805 (19) | 0.01604 (19) | 0.01374 (18) | −0.00094 (13) | 0.00276 (13) | −0.00157 (13) |
F2 | 0.0247 (5) | 0.0389 (6) | 0.0406 (6) | −0.0027 (4) | 0.0143 (4) | 0.0164 (5) |
N1 | 0.0131 (6) | 0.0139 (6) | 0.0121 (5) | −0.0001 (4) | 0.0003 (4) | 0.0014 (4) |
O1 | 0.0185 (5) | 0.0175 (5) | 0.0147 (5) | −0.0020 (4) | 0.0024 (4) | −0.0026 (4) |
O3 | 0.0197 (6) | 0.0269 (6) | 0.0238 (6) | −0.0057 (5) | 0.0057 (4) | 0.0064 (5) |
N2 | 0.0167 (6) | 0.0160 (6) | 0.0206 (6) | −0.0004 (5) | −0.0012 (5) | −0.0029 (5) |
F1 | 0.0456 (7) | 0.0419 (6) | 0.0206 (5) | −0.0067 (5) | −0.0127 (5) | 0.0051 (4) |
C6 | 0.0127 (7) | 0.0136 (7) | 0.0238 (7) | −0.0002 (5) | −0.0023 (6) | 0.0026 (6) |
C2 | 0.0131 (6) | 0.0147 (7) | 0.0131 (6) | 0.0026 (5) | −0.0002 (5) | 0.0006 (5) |
C17 | 0.0130 (7) | 0.0154 (7) | 0.0152 (7) | 0.0028 (5) | 0.0000 (5) | 0.0014 (5) |
C9 | 0.0133 (6) | 0.0139 (6) | 0.0143 (6) | 0.0030 (5) | −0.0002 (5) | 0.0009 (5) |
C11 | 0.0126 (7) | 0.0176 (7) | 0.0178 (7) | −0.0033 (5) | 0.0008 (5) | 0.0060 (6) |
C5 | 0.0120 (6) | 0.0147 (7) | 0.0167 (7) | −0.0012 (5) | 0.0022 (5) | 0.0025 (5) |
C18 | 0.0132 (7) | 0.0133 (7) | 0.0207 (7) | 0.0033 (5) | 0.0014 (5) | 0.0053 (6) |
C21 | 0.0165 (7) | 0.0255 (8) | 0.0306 (8) | 0.0042 (6) | 0.0085 (6) | 0.0141 (7) |
C7 | 0.0125 (7) | 0.0124 (7) | 0.0273 (8) | 0.0010 (5) | −0.0025 (6) | −0.0005 (6) |
C16 | 0.0215 (8) | 0.0192 (7) | 0.0198 (7) | −0.0027 (6) | 0.0003 (6) | 0.0050 (6) |
C3 | 0.0116 (6) | 0.0144 (7) | 0.0142 (6) | 0.0012 (5) | −0.0017 (5) | 0.0020 (5) |
C20 | 0.0157 (7) | 0.0179 (8) | 0.0373 (9) | −0.0015 (6) | 0.0006 (6) | 0.0084 (7) |
C19 | 0.0164 (7) | 0.0169 (7) | 0.0252 (8) | 0.0022 (6) | 0.0001 (6) | 0.0041 (6) |
C23 | 0.0191 (7) | 0.0193 (7) | 0.0222 (7) | 0.0007 (6) | 0.0021 (6) | 0.0044 (6) |
C15 | 0.0247 (8) | 0.0309 (9) | 0.0169 (7) | −0.0095 (7) | −0.0038 (6) | 0.0071 (7) |
C10 | 0.0166 (7) | 0.0215 (8) | 0.0323 (9) | −0.0025 (6) | 0.0007 (6) | 0.0042 (7) |
O2 | 0.0439 (8) | 0.0382 (8) | 0.0535 (9) | −0.0277 (7) | 0.0159 (7) | −0.0068 (7) |
C13 | 0.0195 (8) | 0.0275 (9) | 0.0329 (9) | 0.0055 (6) | 0.0019 (7) | 0.0090 (7) |
C12 | 0.0186 (7) | 0.0208 (8) | 0.0226 (7) | 0.0010 (6) | 0.0010 (6) | 0.0039 (6) |
C1 | 0.0181 (8) | 0.0214 (8) | 0.0361 (9) | −0.0035 (6) | −0.0021 (7) | −0.0083 (7) |
C22 | 0.0237 (8) | 0.0254 (8) | 0.0217 (8) | 0.0044 (6) | 0.0059 (6) | 0.0072 (6) |
C14 | 0.0171 (7) | 0.0336 (9) | 0.0285 (8) | −0.0019 (6) | −0.0037 (6) | 0.0160 (7) |
C8 | 0.0229 (8) | 0.0393 (10) | 0.0311 (9) | −0.0082 (7) | 0.0091 (7) | 0.0114 (8) |
C4 | 0.0371 (10) | 0.0491 (12) | 0.0219 (8) | −0.0069 (9) | 0.0088 (7) | 0.0084 (8) |
S1—C9 | 1.7531 (14) | C21—C22 | 1.378 (2) |
S1—C2 | 1.7542 (14) | C7—C1 | 1.493 (2) |
F2—C21 | 1.3544 (17) | C16—C15 | 1.378 (2) |
N1—C3 | 1.3758 (18) | C16—H16 | 0.9500 |
N1—C9 | 1.3761 (18) | C20—C19 | 1.382 (2) |
N1—C5 | 1.4753 (17) | C20—H20 | 0.9500 |
O1—C3 | 1.2154 (17) | C19—H19 | 0.9500 |
O3—C10 | 1.341 (2) | C23—C22 | 1.385 (2) |
O3—C8 | 1.4538 (18) | C23—H23 | 0.9500 |
N2—C9 | 1.2728 (19) | C15—C14 | 1.370 (3) |
N2—C7 | 1.4171 (19) | C10—O2 | 1.206 (2) |
F1—C15 | 1.3636 (19) | C13—C14 | 1.385 (2) |
C6—C7 | 1.348 (2) | C13—C12 | 1.388 (2) |
C6—C10 | 1.487 (2) | C13—H13 | 0.9500 |
C6—C5 | 1.519 (2) | C12—H12 | 0.9500 |
C2—C17 | 1.341 (2) | C1—H1A | 0.9800 |
C2—C3 | 1.4897 (18) | C1—H1B | 0.9800 |
C17—C18 | 1.4578 (19) | C1—H1C | 0.9800 |
C17—H17 | 0.9500 | C22—H22 | 0.9500 |
C11—C16 | 1.392 (2) | C14—H14 | 0.9500 |
C11—C12 | 1.393 (2) | C8—C4 | 1.493 (3) |
C11—C5 | 1.5222 (19) | C8—H8A | 0.9900 |
C5—H5 | 1.0000 | C8—H8B | 0.9900 |
C18—C19 | 1.401 (2) | C4—H4A | 0.9800 |
C18—C23 | 1.405 (2) | C4—H4B | 0.9800 |
C21—C20 | 1.376 (2) | C4—H4C | 0.9800 |
C9—S1—C2 | 91.59 (7) | C19—C20—H20 | 120.8 |
C3—N1—C9 | 116.66 (12) | C20—C19—C18 | 121.37 (15) |
C3—N1—C5 | 122.30 (11) | C20—C19—H19 | 119.3 |
C9—N1—C5 | 120.84 (12) | C18—C19—H19 | 119.3 |
C10—O3—C8 | 116.91 (13) | C22—C23—C18 | 120.98 (15) |
C9—N2—C7 | 116.55 (12) | C22—C23—H23 | 119.5 |
C7—C6—C10 | 123.20 (14) | C18—C23—H23 | 119.5 |
C7—C6—C5 | 121.96 (13) | F1—C15—C14 | 118.29 (15) |
C10—C6—C5 | 114.84 (13) | F1—C15—C16 | 118.06 (16) |
C17—C2—C3 | 120.36 (13) | C14—C15—C16 | 123.65 (15) |
C17—C2—S1 | 129.53 (11) | O2—C10—O3 | 123.27 (15) |
C3—C2—S1 | 110.09 (10) | O2—C10—C6 | 127.00 (16) |
C2—C17—C18 | 130.38 (13) | O3—C10—C6 | 109.72 (13) |
C2—C17—H17 | 114.8 | C14—C13—C12 | 120.42 (16) |
C18—C17—H17 | 114.8 | C14—C13—H13 | 119.8 |
N2—C9—N1 | 126.38 (13) | C12—C13—H13 | 119.8 |
N2—C9—S1 | 122.40 (11) | C13—C12—C11 | 120.25 (15) |
N1—C9—S1 | 111.18 (10) | C13—C12—H12 | 119.9 |
C16—C11—C12 | 119.77 (14) | C11—C12—H12 | 119.9 |
C16—C11—C5 | 120.22 (13) | C7—C1—H1A | 109.5 |
C12—C11—C5 | 120.00 (13) | C7—C1—H1B | 109.5 |
N1—C5—C6 | 108.45 (11) | H1A—C1—H1B | 109.5 |
N1—C5—C11 | 109.58 (11) | C7—C1—H1C | 109.5 |
C6—C5—C11 | 112.94 (12) | H1A—C1—H1C | 109.5 |
N1—C5—H5 | 108.6 | H1B—C1—H1C | 109.5 |
C6—C5—H5 | 108.6 | C21—C22—C23 | 118.42 (15) |
C11—C5—H5 | 108.6 | C21—C22—H22 | 120.8 |
C19—C18—C23 | 118.12 (13) | C23—C22—H22 | 120.8 |
C19—C18—C17 | 117.51 (13) | C15—C14—C13 | 117.95 (15) |
C23—C18—C17 | 124.36 (14) | C15—C14—H14 | 121.0 |
F2—C21—C20 | 118.31 (15) | C13—C14—H14 | 121.0 |
F2—C21—C22 | 118.93 (15) | O3—C8—C4 | 106.72 (14) |
C20—C21—C22 | 122.76 (14) | O3—C8—H8A | 110.4 |
C6—C7—N2 | 122.33 (13) | C4—C8—H8A | 110.4 |
C6—C7—C1 | 126.18 (14) | O3—C8—H8B | 110.4 |
N2—C7—C1 | 111.43 (13) | C4—C8—H8B | 110.4 |
C15—C16—C11 | 117.95 (15) | H8A—C8—H8B | 108.6 |
C15—C16—H16 | 121.0 | C8—C4—H4A | 109.5 |
C11—C16—H16 | 121.0 | C8—C4—H4B | 109.5 |
O1—C3—N1 | 123.41 (12) | H4A—C4—H4B | 109.5 |
O1—C3—C2 | 126.46 (13) | C8—C4—H4C | 109.5 |
N1—C3—C2 | 110.13 (12) | H4A—C4—H4C | 109.5 |
C21—C20—C19 | 118.32 (15) | H4B—C4—H4C | 109.5 |
C21—C20—H20 | 120.8 | ||
C9—S1—C2—C17 | 179.32 (14) | C9—N1—C3—O1 | −174.93 (13) |
C9—S1—C2—C3 | −2.35 (10) | C5—N1—C3—O1 | 10.2 (2) |
C3—C2—C17—C18 | −177.86 (13) | C9—N1—C3—C2 | 4.85 (17) |
S1—C2—C17—C18 | 0.3 (2) | C5—N1—C3—C2 | −169.99 (12) |
C7—N2—C9—N1 | −2.8 (2) | C17—C2—C3—O1 | −2.5 (2) |
C7—N2—C9—S1 | 174.64 (10) | S1—C2—C3—O1 | 178.97 (12) |
C3—N1—C9—N2 | 170.94 (14) | C17—C2—C3—N1 | 177.70 (13) |
C5—N1—C9—N2 | −14.1 (2) | S1—C2—C3—N1 | −0.80 (14) |
C3—N1—C9—S1 | −6.71 (15) | F2—C21—C20—C19 | 179.07 (13) |
C5—N1—C9—S1 | 168.21 (10) | C22—C21—C20—C19 | −1.5 (2) |
C2—S1—C9—N2 | −172.76 (13) | C21—C20—C19—C18 | 0.0 (2) |
C2—S1—C9—N1 | 5.00 (11) | C23—C18—C19—C20 | 1.2 (2) |
C3—N1—C5—C6 | −164.71 (12) | C17—C18—C19—C20 | −177.90 (14) |
C9—N1—C5—C6 | 20.67 (17) | C19—C18—C23—C22 | −1.0 (2) |
C3—N1—C5—C11 | 71.60 (16) | C17—C18—C23—C22 | 178.08 (14) |
C9—N1—C5—C11 | −103.03 (14) | C11—C16—C15—F1 | 179.95 (13) |
C7—C6—C5—N1 | −13.70 (19) | C11—C16—C15—C14 | −0.2 (2) |
C10—C6—C5—N1 | 167.22 (12) | C8—O3—C10—O2 | −0.4 (2) |
C7—C6—C5—C11 | 107.95 (16) | C8—O3—C10—C6 | 178.65 (13) |
C10—C6—C5—C11 | −71.13 (16) | C7—C6—C10—O2 | −16.7 (3) |
C16—C11—C5—N1 | −101.02 (15) | C5—C6—C10—O2 | 162.33 (17) |
C12—C11—C5—N1 | 77.65 (16) | C7—C6—C10—O3 | 164.23 (14) |
C16—C11—C5—C6 | 137.96 (14) | C5—C6—C10—O3 | −16.70 (18) |
C12—C11—C5—C6 | −43.37 (17) | C14—C13—C12—C11 | −0.9 (2) |
C2—C17—C18—C19 | 169.68 (15) | C16—C11—C12—C13 | 1.0 (2) |
C2—C17—C18—C23 | −9.4 (2) | C5—C11—C12—C13 | −177.68 (14) |
C10—C6—C7—N2 | 178.12 (13) | F2—C21—C22—C23 | −178.84 (14) |
C5—C6—C7—N2 | −0.9 (2) | C20—C21—C22—C23 | 1.7 (2) |
C10—C6—C7—C1 | −5.0 (2) | C18—C23—C22—C21 | −0.4 (2) |
C5—C6—C7—C1 | 175.96 (14) | F1—C15—C14—C13 | −179.84 (14) |
C9—N2—C7—C6 | 10.3 (2) | C16—C15—C14—C13 | 0.4 (2) |
C9—N2—C7—C1 | −166.99 (13) | C12—C13—C14—C15 | 0.2 (2) |
C12—C11—C16—C15 | −0.4 (2) | C10—O3—C8—C4 | 169.32 (15) |
C5—C11—C16—C15 | 178.24 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
C19—H19···F1i | 0.95 | 2.53 | 3.437 (2) | 159 |
C13—H13···F1ii | 0.95 | 2.56 | 3.513 (2) | 178 |
C14—H14···O1ii | 0.95 | 2.36 | 3.303 (2) | 172 |
Symmetry codes: (i) −x+3/2, y−1/2, −z−1/2; (ii) −x+3/2, y+1/2, −z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C19—H19···F1i | 0.95 | 2.534 | 3.437 (2) | 159 |
C13—H13···F1ii | 0.95 | 2.563 | 3.513 (2) | 178 |
C14—H14···O1ii | 0.95 | 2.359 | 3.303 (2) | 172 |
Symmetry codes: (i) −x+3/2, y−1/2, −z−1/2; (ii) −x+3/2, y+1/2, −z−1/2. |
Acknowledgements
NSB is thankful to the University Grants Commission (UGC), India, for financial assistance.
References
Alam, O., Khan, S. A., Siddiqui, N. & Ahsan, W. (2010). Med. Chem. Res. 19, 1245–1258. Web of Science CrossRef CAS Google Scholar
Ashok, M., Holla, B. S. & Kumari, N. S. (2007). Eur. J. Med. Chem. 42, 380–385. Web of Science CrossRef PubMed CAS Google Scholar
Bruker. (1998). SMART, SAINT-Plus and SADABS. Bruker Axs Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Fischer, A., Yathirajan, H. S., Mithun, A., Bindya, S. & Narayana, B. (2007). Acta Cryst. E63, o1224–o1225. Web of Science CSD CrossRef IUCr Journals Google Scholar
Kulakov, I., Nurkenov, O., Turdybekov, D., Issabaeva, G., Mahmutova, A. & Turdybekov, K. (2009). Chem. Heterocycl. Compd, 45, 856–859. CrossRef CAS Google Scholar
Nagarajaiah, H. & Begum, N. S. (2011). Acta Cryst. E67, o3444. Web of Science CSD CrossRef IUCr Journals Google Scholar
Prasanna, M. D. & Guru Row, T. N. (2001). J. Mol. Struct. 562, 55–61. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Watkin, D. J., Prout, C. K. & Pearce, L. J. (1996). CAMERON. Chemical Crystallography Laboratory, University of Oxford, England. Google Scholar
Yamazaki, T., Taguchi, T. & Ojima, I. (2009). In Fluorine in Medicinal Chemistry and Chemical Biology. edited by I. Ojima, pp. 3–46. Chichester: Wiley-Blackwell. Google Scholar
Zhao, C.-G., Hu, J., Zhang, Y.-L., Zhang, J. & Yang, S.-L. (2011). Acta Cryst. E67, o3009. Web of Science CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyrimidine derivatives are of interest because of their useful biological and therapeutic activities (Ashok et al., 2007). The presence of both pyrimidine and thiazole rings results in enhanced activity (Alam et al., 2010; Kulakov et al., 2009). Intermolecular interactions of the type C—H···F and C—F···π can supply both directional and actively favorable pathways to hold the molecules together in the crystalline lattice that offer additional stability (Prasanna & Guru Row, 2001; Yamazaki et al., 2009). Herein, we report the crystal structure of the title compound.
The molecular structure of the title compound is shown in Fig. 1. The 3-fluoro phenyl ring adopts a syn periplanar conformation with respect to C5—H5 bond of the pyrimidine ring. The pyrimidine ring is in a half-chair conformation with atoms N1 and C5 displaced by -0.110 (1) and 0.168 (1) Å from the mean plane of the other four atoms (N2/C6/C7/C9 with a maximun deviation of 0.042 (1)Å for both atoms N2 and C7). The 3-fluorophenyl group is in the axial position. The thiazole ring (r.m.s. deviation = 0.0252 Å) forms dihedral angles of 84.8 (7) and 9.6 (7)° with the 3-fluoro-substituted and 4-fluoro-substituted benzene rings respectively. The exocyclic ester group at C6 adopts cis orientation with respect to C6═C7 double bond. The bond and angles in the title compound agree with the corresponding bond distances and angles reported in related compounds (Fischer et al., 2007; Zhao et al., 2011; Nagarajaiah & Begum, 2011). In the crystal, weak C—H···F and C—H···O hydrogen bonds connect molecules forming zigzag chains along the b axis (Fig. 2). In addition π–π stacking interactions with a centroid–centroid distance of 3.7633 (9)Å connect these chains into ladders via inversion-related 4-fluorophenyl groups.