research communications
of zwitterionic 4-(ammoniomethyl)benzoate: a simple molecule giving rise to a complex supramolecular structure
aFacultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Casilla 233, Santiago, Chile, bDepartamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Santiago de Chile, Chile, and cDepartamento de Física, Centro Atómico Constituyentes, Comisión Nacional de Energía Atómica, Buenos Aires, Argentina
*Correspondence e-mail: aatria@ciq.uchile.cl
The 8H9NO2·H2O consists of an isolated 4-(ammoniomethyl)benzoate zwitterion derived from 4-aminomethylbenzoic acid through the migration of the acidic proton, together with a water molecule of crystallization that is disordered over three sites with occupancy ratios (0.50:0.35:0.15). In the N—H⋯O hydrogen bonds together with π–π stacking of the benzene rings [centroid–centroid distance = 3.8602 (18) Å] result in a strongly linked, compact three-dimensional structure.
of the title compound, CKeywords: crystal structure; zwitterion; crystal packing; 4-(ammoniomethyl)benzoate; N—H⋯O hydrogen bonds; π–π stacking.
CCDC reference: 1029721
1. Chemical context
As part of a long-range project to find new transition-metal complexes of simple ligands such as carboxylates and ) reveals to have formed few coordination complexes whose structures have been reported. The title compound was the unexpected product of an attempt to form a CoII complex with 4-aminomethylbenzoic acid [HAMBA, (a) in scheme below], which has no entries in the CSD, and diaminopurine (DAP).
we have screened a number of derivatives of benzoic acid, in particular those that a search of the Cambridge Structural Database (CSD, Version 5.35, updated to May 2014; Groom & Allen, 2014No coordination complex resulted, but the reaction provided, as an unexpected bonus, a crystalline phase of the monohydrate of the zwitterion of HAMBA (see scheme below), in which the acidic proton has migrated to the amino group resulting in COO− and CH2NH3+ substituents on the aromatic ring and forming 4-(ammoniomethyl)benzoate [(b) in scheme above]. In contrast to the utmost simplicity of its molecular structure, the zwitterion displays an extremely complex hydrogen-bonding scheme and concomitant supramolecular structure as reported herein.
2. Structural commentary
Fig. 1 shows the of the title compound, (I). The C—C6—C backbone is essentially planar [maximum deviation of 0.005 (3) Å for C8], and subtends dihedral angles of 6.8 (2) and 83.9 (2)° with the O2C–C (major disorder component) and C–CN planes, respectively. Bond lengths and angles are normal, with the C—O bond lengths of the carboxylate group close to equal, indicating extensive electron delocalization over the unit [C7—O1: 1.266 (4), C7—O2: 1.262 (4) Å].
3. Supramolecular features
As indicated previously, the most interesting features in the structure are those derived from the intermolecular interactions, presented in Table 1 (hydrogen bonds) and Table 2 (π–π contacts). Each ammonium group is bound through N—H⋯O hydrogen bonds to three different molecules of (I), with the carboxylato oxygen atoms as acceptors (Fig. 2a). In addition, the benzene rings stack almost parallel to each other in slanted columns (Fig. 2b). N1—H1A⋯O2 and N1—H1C⋯O1 hydrogen bonds link four molecules together, generating R44(24) ring motifs, Fig. 3a, while a second synthon with an R43(10) graph set motif is generated through contacts involving all three hydrogens of the ammonium cation, Fig. 3b (for graph-set notation see, for example, Bernstein et al., 1995).
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The R44(24) synthons combine with the π–π stacking interactions to generate layers of molecules in the ac plane. The π–π contacts are inclined parallel to either the (101) plane for one set of contacts (Fig. 4a) or the (01) plane for the other (Fig. 4b).
Fig. 5 shows a view along the c axis, and reveals the `corrugated' shape of these sheets, consisting of zigzag chains of molecules linked in a head-to-tail fashion and stacked roughly along the a-axis direction. Adjacent sheets are interconnected along b in an obverse fashion by N1—H1B⋯O1 hydrogen bonds.
Finally, Fig. 6 presents a view approximately along the ac diagonal displaying the two hydrogen-bonding synthons, A and B, together with the π–π interactions and demonstrates how they combine to generate the three-dimensional network.
4. Database survey
Neither 4-(ammoniomethyl)benzoate nor its zwitterionic form described here appear in the CSD (Version 5.35, updated to May 2014). The most closely related structures are those of a zwitterionic form of 4-ammoniomethylcyclohexane-1-carboxylic acid (IIa) (Shahzadi et al., 2007; CSD refcode AMMCHC11) and its hemihydrated analogue (IIb) (Yamazaki et al., 1981; CSD refcode AMCHCA), in which the phenyl ring is replaced by cyclohexane. This introduces some obvious differences with (I), for π–π contacts are clearly precluded and there are different relative orientations of the hydrogen-bonding donors and acceptors. In spite of this, the hydrogen-bonding schemes do show some striking similarities, leading to similar (though differently connected) two-dimensional sub-structures. In particular, the same R44(24) and R43(10) synthons are present in both cases as in (I), and play predominant roles in the crystal packing. This is despite the presence of the water solvate in (IIb), which is not involved in classical hydrogen bonding to the zwitterion.
5. Synthesis and crystallization
To an aqueous solution of HAMBA (1 mmol, 0.15116g) were added an aqueous solution of Co(Ac)2·4H2O (2 mmol, 0.49816g) and an ethanolic solution of DAP (1 mmol, 0.15009 g). The resulting mixture was heated at reflux for 4 h and left to cool down and evaporate at room temperature. After a few days, crystals suitable for X-ray diffraction of the (uncomplexed) zwitterion (I) appeared. These were used as grown.
6. Refinement
Crystal data, data collection and structure .
details are summarized in Table 3
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There are two disorder features in this structure. The oxygen atoms of the carboxylate group were disordered over two positions that were refined with similarity restraints with occupancy factors 0.912 (13)/0.088 (13). Disorder involving the water molecule was more pronounced, with the oxygen atoms disordered over three distinct sites. When refined, the occupancies appeared to be strongly correlated with their displacement factors, showing an oscillating behaviour. In the final
cycles, occupancies were fixed to the mean values of these oscillation ranges with occupancy ratios 0.50:0.35:0.15.All the H atoms (except for those of the disordered water molecules) were recognizable in an early difference Fourier map. Hydrogen atoms of the NH3 group were refined with N—H distances restrained to be equal to within 0.01Å [final d(N—H) = 1.07 (3) Å]. All H atoms bound to carbon were refined using a riding model with d(C—H) = 0.93 Å and Uiso = 1.2Ueq(C) for aromatic and 0.98 Å, Uiso = 1.2Ueq(C) for methylene H atoms. The hydrogen atoms on the disordered water solvate were not identified.
When trying to calculate the Fdd2, the `inversion rule' to be applied is Inv(x, y, z) = − x, − y, −z, After this, the proceeded smoothly without any change in the symmetry operators. Even so, the resulting Flack Parameters were both disparate and high [−1.2 (4) vs 2.2 (4) for the reported/inverted structures, respectively]. Hence, the could not be determined reliably.
of the inverted structure, it was recognised that the was one of the few (seven, in fact) where the structure cannot be inverted by simple inversion of the atomic coordinates. In the case ofSupporting information
CCDC reference: 1029721
10.1107/S1600536814022831/sj5430sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814022831/sj5430Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814022831/sj5430Isup3.cml
As part of a long-range project to find new transition-metal complexes of simple ligands such as carboxylates and
we have screened a number of derivatives of benzoic acid, in particular those that a search of the Cambridge Structural Database (CSD, Version 5.35, updated to May 2014; Groom & Allen, 2014) reveals to have formed few coordination complexes whose structures have been reported. The title compound was the unexpected product of an attempt to form a CoII complex with 4-aminomethylbenzoic acid [HAMBA, (a) in scheme below], which has no entries in the CSD, and diaminopurine (DAP).No coordination complex resulted, but the reaction provided, as an unexpected bonus, a crystalline phase of the monohydrate of the zwitterion of HAMBA (see scheme below), in which the acidic proton has migrated to the amino group resulting in COO- and CH2NH3+ substituents on the aromatic ring and forming 4-(ammoniomethyl)benzoate [(b) in scheme above]. In contrast to the utmost simplicity of its molecular structure, the zwitterion displays an extremely complex hydrogen-bonding scheme and concomitant supramolecular structure as reported herein.
Fig. 1 shows the
of the title compound, (I). The C—C6—C backbone is planar [maximum deviation of 0.005 (3) Å for C8], and subtends dihedral angles of 6.8 (su?) and 83.9 (su?)° with the O2C–C (major disorder component) and C–CN planes, respectively. Bond lengths and angles are normal, with the C—O bond lengths of the carboxylate group close to equal, indicating extensive electron delocalization over the unit [C7—O1: 1.266 (4), C7—O2: 1.262 (4) Å].As indicated previously, the most interesting features in the structure are those derived from the intermolecular interactions, presented in Table 2 (hydrogen bonds) and Table 3 (π–π contacts). Each ammonium group is bound through N—H···O hydrogen bonds to three different molecules of (I), with the carboxylato oxygens as acceptors (Fig 2a). In addition, the benzene rings stack almost parallel to each other in slanted columns (Fig. 2b). N1—H1A···O2 and N1—H1C···O1 hydrogen bonds link four molecules together, generating R44(24) ring motifs, Fig. 3a, while a second synthon with an R34(10) graph set motif is generated through contacts involving all three hydrogens of the ammonium cation, Fig 3b (for graph-set notation see, for example, Bernstein et al., 1995).
The R44(24) synthons combine with the π–π stacking interactions to generate layers of molecules in the ac plane. The π–π contacts are inclined parallel to either the (101) plane for one set of contacts (Fig. 4a) or the (101) plane for the other (Fig. 4b).
Fig. 5 shows a view along the c axis, and reveals the `corrugated' shape of these sheets, consisting of zigzag chains of molecules linked in a head-to-tail fashion and stacked roughly along the a-axis direction. Adjacent sheets are interconnected along b in an obverse fashion by N1—H1B···O1 hydrogen bonds.
Finally, Fig 6 presents a view approximately along the ac diagonal displaying the two hydrogen-bonding synthons, A and B, together with the π–π interactions and demonstrates how they combine to generate the three-dimensional network.
Neither 4-(ammoniomethyl)benzoate nor its zwitterionic form described here appear in the CSD (Version 5.35, updated to May 2014). The most closely related structures are those of a zwitterionic form of 4-ammoniomethylcyclohexane-1-carboxylic acid (IIa) (Shahzadi et al., 2007; CSD refcode AMMCHC11) and its hemihydrated analogue (IIb) (Yamazaki et al., 1981; CSD refcode AMCHCA), in which the phenyl ring is replaced by cyclohexane. This introduces some obvious differences with (I), for π–π contacts are clearly precluded and there are different relative orientations of the hydrogen-bonding donors and acceptors. In spite of this, the hydrogen-bonding schemes do show some striking similarities, leading to similar (though differently connected) two-dimensional sub-structures. In particular, the same R44(24) and R34(10) synthons are present in both cases as in (I), and play predominant roles in the crystal packing. This is despite the presence of the water solvate in (IIb), which is not involved in classical hydrogen bonding to the zwitterion.
To an aqueous solution of HAMBA (1 mmol, 0.15116g ) were added an aqueous solution of Co(Ac)2·4H2O ( 2 mmol, 0.49816g ) and an ethanolic solution of DAP (1 mmol, 0.15009 g). The resulting mixture was heated at reflux for 4 hours and left to cool down and evaporate at room temperature. After a few days, crystals suitable for X-ray diffraction of the (uncomplexed) zwitterion (I) appeared. These were used as grown.
Crystal data, data collection and structure
details are summarized in Table 3.There are two disorder features in this structure. The oxygen atoms of the carboxylate group were disordered over two positions that were refined with similarity restraints with occupancy factors 0.912 (13)/0.088 (13). Disorder involving the water solvate was more pronounced, with the oxygen atoms disordered over three distinct sites. When refined, the occupancies appeared to be strongly correlated with their displacement factors, showing an oscillating behaviour. In the final
cycles, occupancies were fixed to the mean values of these oscillation ranges with occupancy ratios 0.50:0.35:0.15.All the H atoms (except for those of the disordered water molecules) were recognizable in an early difference Fourier map. Hydrogen atoms of the NH3 group were refined with N—H distances restrained to be equal to within 0.01Å [final d(N—H) = 1.07 (3) Å]. All H atoms bound to carbon were refined using a riding model with d(C—H) = 0.93 Å and Uiso = 1.2Ueq(C) for aromatic and 0.98 Å, Uiso = 1.2Ueq(C) for methylene H atoms. The hydrogen atoms on the disordered water solvate were not identified.
When trying to calculate the
of the inverted structure, it was recognised that the was one of the few (seven, in fact) where the structure cannot be inverted by simple inversion of the atomic coordinates. In the case of Fdd2, the `inversion rule' to be applied is Inv(x,y,z) = 0.25-x, 0.25-y,-z, After this, the proceeded smoothly without any change in the symmetry operators. Even so, the resulting Flack Parameters were both disparate and high [-1.2 (4) vs 2.2 (4) for the reported/inverted structures, respectively]. Hence, the could not be determined reliably.Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2002); data reduction: SAINT (Bruker, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).The asymmetric unit of (I). The minor disorder component of the carboxylate group and those of the solvate water molecule are drawn with broken lines. (a) Hydrogen-bonding and (b) π–π interactions in (I). Symmetry codes: (i) x - 1/4, -y + 7/4, z - 3/4; (ii) -x + 5/4, y - 1/4, z - 1/4; (iii) x - 1/4, -y + 7/4, z + 1/4; (iv) x + 1/4,-y + 7/4,z - 1/4. (a) R44(24) loops, A, formed by molecules of (I) through N1—H1A···O2 and N1—H1C···O1 hydrogen bonds. (b) R34(10) loops, B, formed by molecules of (I) through N—H···O contacts involving all three H atoms of the NH3+ substituent. Sheets of molecules of (I) in the ac plane linked by N—H···O hydrogen bonds (single dashed lines) and π–π interactions (double dashed lines). Chains of molecules of (I) linked by N—H···O hydrogen bonds to form a three-dimensional network. Overall packing for (I) showing how the A and B ring motifs combine with π–π stacking interactions to generate a three-dimensional network. |
C8H9NO2·H2O | Dx = 1.362 Mg m−3 |
Mr = 169.18 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Fdd2 | Cell parameters from 1680 reflections |
a = 13.743 (3) Å | θ = 3.1–26.1° |
b = 38.302 (7) Å | µ = 0.11 mm−1 |
c = 6.2686 (11) Å | T = 297 K |
V = 3299.7 (11) Å3 | Block, pale pink |
Z = 16 | 0.48 × 0.30 × 0.22 mm |
F(000) = 1440 |
Bruker SMART CCD area detector diffractometer | 1555 reflections with I > 2σ(I) |
CCD rotation images, thin slices scans | Rint = 0.021 |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | θmax = 27.9°, θmin = 2.1° |
Tmin = 0.94, Tmax = 0.98 | h = −16→18 |
6720 measured reflections | k = −48→47 |
1827 independent reflections | l = −8→8 |
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.046 | w = 1/[σ2(Fo2) + (0.0839P)2 + 1.177P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.137 | (Δ/σ)max < 0.001 |
S = 1.04 | Δρmax = 0.21 e Å−3 |
1827 reflections | Δρmin = −0.18 e Å−3 |
134 parameters | Absolute structure: Flack x determined using 616 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons & Flack, 2004) |
13 restraints | Absolute structure parameter: −1.2 (4) |
C8H9NO2·H2O | V = 3299.7 (11) Å3 |
Mr = 169.18 | Z = 16 |
Orthorhombic, Fdd2 | Mo Kα radiation |
a = 13.743 (3) Å | µ = 0.11 mm−1 |
b = 38.302 (7) Å | T = 297 K |
c = 6.2686 (11) Å | 0.48 × 0.30 × 0.22 mm |
Bruker SMART CCD area detector diffractometer | 1827 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | 1555 reflections with I > 2σ(I) |
Tmin = 0.94, Tmax = 0.98 | Rint = 0.021 |
6720 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.137 | Δρmax = 0.21 e Å−3 |
S = 1.04 | Δρmin = −0.18 e Å−3 |
1827 reflections | Absolute structure: Flack x determined using 616 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons & Flack, 2004) |
134 parameters | Absolute structure parameter: −1.2 (4) |
13 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.6801 (4) | 0.96039 (6) | 0.9009 (5) | 0.0628 (10) | 0.912 (13) |
O2 | 0.6899 (4) | 0.94439 (9) | 1.2429 (5) | 0.0759 (12) | 0.912 (13) |
O1A | 0.641 (3) | 0.9615 (6) | 0.946 (6) | 0.0628 (10) | 0.088 (13) |
O2A | 0.736 (3) | 0.9413 (8) | 1.210 (5) | 0.0759 (12) | 0.088 (13) |
C1 | 0.67898 (18) | 0.89967 (7) | 0.9810 (4) | 0.0461 (6) | |
C2 | 0.6919 (2) | 0.87399 (7) | 1.1326 (5) | 0.0579 (7) | |
H2 | 0.7033 | 0.8802 | 1.2738 | 0.069* | |
C3 | 0.6881 (2) | 0.83912 (7) | 1.0764 (6) | 0.0620 (8) | |
H3 | 0.6974 | 0.8221 | 1.1800 | 0.074* | |
C4 | 0.6705 (2) | 0.82944 (6) | 0.8686 (5) | 0.0507 (7) | |
C5 | 0.6570 (2) | 0.85503 (7) | 0.7172 (5) | 0.0584 (7) | |
H5 | 0.6449 | 0.8488 | 0.5764 | 0.070* | |
C6 | 0.6612 (2) | 0.89013 (7) | 0.7727 (5) | 0.0538 (7) | |
H6 | 0.6521 | 0.9072 | 0.6691 | 0.065* | |
C7 | 0.68372 (16) | 0.93753 (7) | 1.0465 (5) | 0.0546 (7) | |
C8 | 0.6665 (2) | 0.79104 (7) | 0.8069 (7) | 0.0653 (9) | |
H8A | 0.6956 | 0.7880 | 0.6672 | 0.078* | |
H8B | 0.7040 | 0.7775 | 0.9085 | 0.078* | |
N1 | 0.5655 (2) | 0.77823 (6) | 0.8030 (5) | 0.0576 (6) | |
H1A | 0.524 (2) | 0.7907 (12) | 0.682 (7) | 0.131 (18)* | |
H1B | 0.5636 (19) | 0.7506 (9) | 0.776 (8) | 0.119 (16)* | |
H1C | 0.529 (2) | 0.7830 (10) | 0.951 (6) | 0.16 (2)* | |
O1WA | 0.6665 (7) | 0.73276 (19) | 0.2872 (17) | 0.100 (2) | 0.5 |
O1WB | 0.6438 (12) | 0.7488 (3) | 0.244 (3) | 0.100 (2) | 0.35 |
O1WC | 0.647 (2) | 0.7552 (7) | 0.323 (5) | 0.100 (2) | 0.15 |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.088 (3) | 0.0314 (9) | 0.0690 (15) | −0.0019 (11) | 0.0092 (15) | −0.0041 (10) |
O2 | 0.107 (3) | 0.0553 (14) | 0.0655 (15) | −0.0144 (17) | −0.0026 (16) | −0.0195 (12) |
O1A | 0.088 (3) | 0.0314 (9) | 0.0690 (15) | −0.0019 (11) | 0.0092 (15) | −0.0041 (10) |
O2A | 0.107 (3) | 0.0553 (14) | 0.0655 (15) | −0.0144 (17) | −0.0026 (16) | −0.0195 (12) |
C1 | 0.0512 (14) | 0.0333 (12) | 0.0537 (15) | −0.0039 (9) | 0.0023 (11) | −0.0037 (10) |
C2 | 0.0784 (19) | 0.0426 (14) | 0.0526 (16) | −0.0071 (13) | −0.0054 (16) | −0.0023 (12) |
C3 | 0.0843 (19) | 0.0379 (13) | 0.0638 (19) | −0.0031 (14) | −0.0036 (14) | 0.0076 (13) |
C4 | 0.0527 (13) | 0.0296 (11) | 0.0697 (17) | −0.0005 (10) | 0.0082 (12) | −0.0056 (12) |
C5 | 0.083 (2) | 0.0411 (14) | 0.0511 (15) | −0.0050 (13) | 0.0033 (14) | −0.0103 (12) |
C6 | 0.0757 (18) | 0.0318 (12) | 0.0538 (16) | −0.0001 (11) | −0.0040 (13) | −0.0002 (11) |
C7 | 0.0639 (16) | 0.0372 (13) | 0.0626 (18) | −0.0062 (11) | 0.0025 (13) | −0.0113 (13) |
C8 | 0.0710 (18) | 0.0320 (12) | 0.093 (2) | 0.0035 (12) | 0.0091 (17) | −0.0108 (14) |
N1 | 0.0777 (15) | 0.0303 (10) | 0.0648 (15) | −0.0039 (10) | −0.0015 (12) | −0.0033 (11) |
O1WA | 0.102 (4) | 0.086 (5) | 0.110 (6) | −0.028 (5) | 0.013 (4) | −0.009 (5) |
O1WB | 0.102 (4) | 0.086 (5) | 0.110 (6) | −0.028 (5) | 0.013 (4) | −0.009 (5) |
O1WC | 0.102 (4) | 0.086 (5) | 0.110 (6) | −0.028 (5) | 0.013 (4) | −0.009 (5) |
O1—C7 | 1.266 (4) | C4—C5 | 1.377 (4) |
O2—C7 | 1.262 (4) | C4—C8 | 1.521 (4) |
O1A—C7 | 1.259 (13) | C5—C6 | 1.390 (4) |
O2A—C7 | 1.256 (13) | C5—H5 | 0.9300 |
C1—C6 | 1.378 (4) | C6—H6 | 0.9300 |
C1—C2 | 1.379 (4) | C8—N1 | 1.472 (4) |
C1—C7 | 1.509 (4) | C8—H8A | 0.9700 |
C2—C3 | 1.382 (4) | C8—H8B | 0.9700 |
C2—H2 | 0.9300 | N1—H1A | 1.07 (3) |
C3—C4 | 1.376 (5) | N1—H1B | 1.07 (3) |
C3—H3 | 0.9300 | N1—H1C | 1.07 (3) |
C6—C1—C2 | 119.1 (2) | O2A—C7—O1A | 126.0 (16) |
C6—C1—C7 | 121.4 (2) | O2—C7—O1 | 124.2 (3) |
C2—C1—C7 | 119.5 (3) | O2A—C7—C1 | 111.0 (15) |
C1—C2—C3 | 120.6 (3) | O1A—C7—C1 | 123.0 (14) |
C1—C2—H2 | 119.7 | O2—C7—C1 | 118.0 (3) |
C3—C2—H2 | 119.7 | O1—C7—C1 | 117.8 (3) |
C4—C3—C2 | 120.6 (3) | N1—C8—C4 | 111.1 (2) |
C4—C3—H3 | 119.7 | N1—C8—H8A | 109.4 |
C2—C3—H3 | 119.7 | C4—C8—H8A | 109.4 |
C3—C4—C5 | 119.0 (2) | N1—C8—H8B | 109.4 |
C3—C4—C8 | 120.5 (3) | C4—C8—H8B | 109.4 |
C5—C4—C8 | 120.5 (3) | H8A—C8—H8B | 108.0 |
C4—C5—C6 | 120.7 (3) | C8—N1—H1A | 111.9 (15) |
C4—C5—H5 | 119.6 | C8—N1—H1B | 110.8 (15) |
C6—C5—H5 | 119.6 | H1A—N1—H1B | 109 (4) |
C1—C6—C5 | 120.1 (3) | C8—N1—H1C | 111.6 (16) |
C1—C6—H6 | 120.0 | H1A—N1—H1C | 107 (2) |
C5—C6—H6 | 120.0 | H1B—N1—H1C | 107 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2i | 1.07 (3) | 1.75 (3) | 2.804 (4) | 170 (3) |
N1—H1B···O1ii | 1.07 (3) | 1.73 (4) | 2.768 (3) | 162 (4) |
N1—H1C···O1iii | 1.07 (3) | 1.87 (3) | 2.901 (6) | 161 (3) |
Symmetry codes: (i) x−1/4, −y+7/4, z−3/4; (ii) −x+5/4, y−1/4, z−1/4; (iii) x−1/4, −y+7/4, z+1/4. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2i | 1.07 (3) | 1.75 (3) | 2.804 (4) | 170 (3) |
N1—H1B···O1ii | 1.07 (3) | 1.73 (4) | 2.768 (3) | 162 (4) |
N1—H1C···O1iii | 1.07 (3) | 1.87 (3) | 2.901 (6) | 161 (3) |
Symmetry codes: (i) x−1/4, −y+7/4, z−3/4; (ii) −x+5/4, y−1/4, z−1/4; (iii) x−1/4, −y+7/4, z+1/4. |
Cg1 is the centroid of atoms C1–C6. ccd is the centroid–centroid distance, da is the dihedral angle between rings and ipd is the interplanar distance, or (mean) distance from one plane to the neighbouring centroid. For details, see Janiak (2000). |
Group 1···Group 2 | ccd | da | ipd |
Cg1···Cg1iii | 3.8602 (18) | 0.7 (2) | 3.665 (5) |
Symmetry code: (iii) x-1/4, -y+7/4, z+1/4. |
Experimental details
Crystal data | |
Chemical formula | C8H9NO2·H2O |
Mr | 169.18 |
Crystal system, space group | Orthorhombic, Fdd2 |
Temperature (K) | 297 |
a, b, c (Å) | 13.743 (3), 38.302 (7), 6.2686 (11) |
V (Å3) | 3299.7 (11) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.48 × 0.30 × 0.22 |
Data collection | |
Diffractometer | Bruker SMART CCD area detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2002) |
Tmin, Tmax | 0.94, 0.98 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6720, 1827, 1555 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.659 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.137, 1.04 |
No. of reflections | 1827 |
No. of parameters | 134 |
No. of restraints | 13 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.21, −0.18 |
Absolute structure | Flack x determined using 616 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons & Flack, 2004) |
Absolute structure parameter | −1.2 (4) |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2002), SHELXS97 (Sheldrick, 2008), SHELXL2014 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Acknowledgements
The authors acknowledge FONDECYT project No. 1120125.
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