research communications
Crystal structures of (RS)-N-[(1R,2S)-2-benzyloxy-1-(2,6-dimethylphenyl)propyl]-2-methylpropane-2-sulfinamide and (RS)-N-[(1S,2R)-2-benzyloxy-1-(2,4,6-trimethylphenyl)propyl]-2-methylpropane-2-sulfinamide: two related protected 1,2-amino alcohols
aDepartment of Chemistry, 120 Trustee Road, 412 Hutchison Hall, University of Rochester, Rochester, NY 14627, USA
*Correspondence e-mail: weix@chem.rochester.edu
The title compounds, C22H31NO2S, (1), and C23H33NO2S, (2), are related protected 1,2-amino They differ in the substituents on the benzene ring, viz. 2,6-dimethylphenyl in (1) and 2,4,6-trimethylphenyl in (2). The plane of the phenyl ring is inclined to that of the benzene ring by 28.52 (7)° in (1) and by 44.65 (19)° in (2). In the crystal of (1), N—H⋯O=S and C—H⋯O=S hydrogen bonds link molecules, forming chains along [100], while in (2), similar hydrogen bonds link molecules into chains along [010]. The absolute structures of both compounds were determined by resonance scattering.
1. Chemical context
1,2-Amino ) and have been used extensively as components of chiral ligands and auxiliaries in (Ager et al., 1996; Pu & Yu, 2001). In order to develop new chiral ligands and as part of an advanced undergraduate laboratory course, we sought to make a series of 2-aryl-1-methyl-1,2-amino The most straightforward synthesis of these compounds was reported by Ellman (Tang et al., 2001; Evans & Ellman, 2003). The method relies upon the chiral ammonia equivalent, 2-methyl-2-propanesulfinamide (tert-butanesulfinamide), which is readily available from a variety of commercial sources or easily synthesized on scale (Weix et al., 2005). In the original Ellman report, the of the products was determined by deprotection of the amine and alcohol, to form the corresponding oxazolidinone, and correlation of the 1H NMR spectra with the literature (Zietlow & Steckhan, 1994).
are found in a variety of pharmaceutically active compounds (Lee & Kang, 2004We report herein on the syntheses and structures of two different but related protected 1,2-amino N-tert-butanesulfinyl imine (Evans & Ellman, 2003). The reaction of imine (3a) with xylylmagnesium bromide, (4a), (see Fig. 1) resulted in a mixture of amino alcohol products from which the major product of the reaction, (1), was isolated in 27% yield after chromatographic separation of the The stereochemistry of this major product was confirmed by X-ray diffraction and the result is consistent with the sense of induction reported by Evans & Ellman (2003).
(1) and (2), from the addition of an arylmagnesium bromide to anThe analogous reaction with mesitylmagnesium bromide, (4b), also resulted in a mixture of products, from which the major product, (6), was isolated in 43% yield. A mixture of other was also isolated, from which a crystal suitable for X-ray diffraction was grown. Unexpectedly, X-ray analysis showed this crystal to be (2), a product that could only have derived from a diastereomerically different isomer of (3a). Upon further investigation, we discovered that the starting material, which we had assumed was pure (3a), contained the minor diastereomer, (3b), in about 8% (determined by 1H NMR; Fontenelle et al., 2014), which had formed due to in the synthesis of (3a). Based on the work of Evans & Ellman (2003), it was deduced that (2) is the minor product expected from the reaction of (3b) with an arylmagnesium bromide. Although no further separations were performed on this mixture that contained (2), it follows that the other present were (7), the minor product from the reaction with (3a), and (8), the major product from the reaction with the slight impurity of (3b).
2. Structural commentary
The molecular structures of compounds (1) and (2) are illustrated in Figs. 2 and 3, respectively. The essential difference in the conformation of the two compounds is that the phenyl ring (C5–C10) is inclined to the benzene ring (C11–C16) by 28.52 (7)° in (1) and by 44.65 (19)° in (2).
3. Supramolecular features
In the crystals of both (1) and (2), chains are formed via intermolecular hydrogen bonding (Tables 1 and 2). In (1), molecules are linked along the [100] direction by a combination of classical (N—H⋯O=S) and non-classical (C—H⋯O=S) hydrogen bonds (Table 1 and Fig. 4). In (2), molecules are linked along the [010] direction also by classical (N—H⋯O=S) and non-classical (C—H⋯O=S) hydrogen bonds (Table 2 and Fig. 5).
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4. Database survey
Although there are 78 structures of N-sulfinyl-protected 1,2-amino in the Cambridge Structural Database (CSD, Version 5.35, last update May 2014; Groom & Allen, 2014), only seven of these structures have substitution at the 1-position and an aryl group at the 2-position. Of these compounds, only three have a tert-butanesulfinyl group [CSD refcodes CAVQOG (Zhong et al., 2005), FIZBIB (Jiang et al., 2014) and WOBNEI (Buesking & Ellman, 2014)], and the other four contain p-toluenesulfinyl groups [CSD refcodes PAQZIR (Zhao et al., 2005), RUXZUG (Ghorai et al., 2010), WADYOR (Fadlalla et al., 2010) and SICSII (Guo et al., 2012)]. However, none of these seven compounds were synthesized by our method of interest.
5. Synthesis and crystallization
The starting sulfinamide, (R,E)-N-(2-(benzyloxy)propylidene)-2-methylpropane-2-sulfinamide, (3a), was prepared from S-ethyl lactate (Enders et al., 2002; Evans & Ellman, 2003). (4a) and (4b) were prepared from 2-bromoxylene and 2-bromomesitylene, respectively (Tilstam & Weinmann, 2002). The synthesis of the title compounds is illustrated in Fig. 1.
General procedure
To an oven-dried 50 ml Schlenk flask equipped with a magnetic stirrer bar and a rubber septum, sulfinamide (3a) and toluene (20 ml) were added and the mixture was cooled to 195 K under nitrogen. The Grignard reagent (4a) or (4b) in toluene was placed under positive nitrogen pressure and was added to the Schlenk flask dropwise by cannula at 195 K. The reaction was stirred at 195 K and stopped when complete consumption of the imine was confirmed by (30% ethyl acetate in hexanes, stained with ceric ammonium molybdate). The reaction was quenched with aqueous saturated sodium sulfate (1.5 ml), then the mixture was warmed to room temperature, dried over sodium sulfate, filtered through Celite, and the solvent was removed under reduced pressure. The ratio of was determined by 1H NMR of the crude material, specifically by examining the amine (N—H) proton resonances. The chemical shifts of anti like (1) and (6) were found around δ = 3.78 p.p.m., while those for syn were found slightly further upfield at δ = 3.61 (mixture, see below) and 3.66 (5) p.p.m.. The crude viscous yellow oil was purified by Crystals suitable for single-crystal X-ray diffraction were obtained from slow evaporation of methanol solutions.
(RS)-N-[(1R,2S)-2-benzyloxy-1-(2,6-dimethylphenyl)propyl]-2-methylpropane-2-sulfinamide (1):
The reaction of sulfinamide (3a) (0.631 g, 2.36 mmol) with xylylmagnesium bromide [(4a), 3.80 equiv, 8.87 mmol], performed according to the general procedure, yielded a 2.5:1 ratio of (1) to (5), respectively (see Fig. 1). The light-yellow oil was purified by (100% diethyl ether) to yield a light-yellow solid (239 mg, 27%).
(1): m.p.: 346–348 K, 1H NMR (500 MHz, CDCl3): δ 1.20 (d, J = 0.3, 9H), 1.32 (d, J = 6.1, 3H), 2.36 (s, 3H), 2.43 (s, 3H), 3.71–3.70 (m, 1H), 3.99 (td, J = 6.7, 0.3, 1H), 4.27 (d, J = 11.8, 1H), 4.39 (d, J = 11.8, 1H), 4.92–4.89 (m, 1H), 6.96–6.94 (m, 1H), 7.02–7.01 (m, 3H), 7.08 (d, J = 7.6, 1H), 7.22 (d, J = 4.6, 3H). 13C NMR (126 MHz, CDCl3): δ 17.65, 21.62, 21.77, 22.71, 55.48, 59.01, 71.27, 76.41, 127.49, 127.60, 127.85, 128.35, 128.50, 130.43, 134.91, 137.22, 138.32, 138.57. IR (neat): 3271, 1084, 1041 cm−1. Analysis calculated for C22H31NO2S (%), 70.74 C, 8.36 H, 3.75 N, found (%) 70.99 C, 8.58 H, 3.66 N.
(RS)-N-[(1S,2R)-2-benzyloxy-1-(2,4,6-trimethylphenyl)propyl]-2-methylpropane-2-sulfinamide (2):
The reaction of sulfinamide (3a) (0.757 g, 2.83 mmol), which contained an impurity (8%) of sulfinamide (3b), with mesitylmagnesium bromide [(4b), 3.00 equiv, 8.50 mmol] in toluene, performed according to the general procedure, yielded a mixture of anti and syn The light-yellow oil was purified by (80% diethyl ether in hexanes) to yield two white solids. The first was the expected major product (6) (467 mg, 43%). The second (207 mg, 19%) was determined to be a mixture of (based on 1H NMR) that contained (2) (confirmed by X-ray crystallography) and two others, likely (7) and (8) (see Fig. 1). No further characterization or separation was performed on this mixture.
(6): 1H NMR (500 MHz, CDCl3): δ 1.17 (s, 9H), 1.29 (d, J = 6.1, 3H), 2.26 (s, 3H), 2.33 (s, 3H), 2.39 (s, 3H), 3.72–3.71 (m, 1H), 3.98–3.95 (m, 1H), 4.29 (d, J = 11.9, 1H), 4.39 (d, J = 11.8, 1H), 4.88–4.86 (m, 1H), 6.77 (s, 1H), 6.84 (s, 1H), 7.06 (d, J = 4.3, 2H), 7.22 (s, 3H). 13C NMR (126 MHz, CDCl3): δ 17.61, 20.97, 21.56, 21.65, 22.76, 55.44, 58.65, 58.67, 71.30, 76.66, 127.58, 127.88, 128.34, 129.38, 130.80, 131.22, 137.13, 138.45. IR (neat): 3271, 1057 cm−1. Analysis calculated for C23H33NO2S (%), 71.27 C, 8.58 H, 3.61 N, found (%) 70.55 C, 8.62 H, 3.49 N.
6. Refinement
Crystal data, data collection and structure . For (1), the was determined using 4260 quotients, which gave a of 0.005 (12). The value obtained without Dobs(h) as a restraint was −0.02 (3), calculated from 5203 Friedel pairs. For (2), the was determined using 1713 quotients, which gave a of 0.03 (6). The value obtained without Dobs(h) as a restraint was −0.04 (8), calculated from 2882 Friedel pairs. In (2), the needle-shaped crystal diffracted weakly at higher angles. The cut-off resolution of 0.72 Å was chosen to maximize the number of enantiomer-determining reflections, while limiting the inclusion of very weak high-angle data. The largest residual peak of 0.72 e Å−3 is located in the S1—C20 bond.
details are summarized in Table 3For both structures, the amine H atoms were located from difference Fourier maps and freely refined. The C-bound H atoms were placed geometrically and treated as riding with C—H = 0.95–1.00 Å and with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(C) for other H atoms.
Supporting information
10.1107/S1600536814022570/su2794sup1.cif
contains datablocks 1, 2, global. DOI:Structure factors: contains datablock 1. DOI: 10.1107/S1600536814022570/su27941sup2.hkl
Structure factors: contains datablock 2. DOI: 10.1107/S1600536814022570/su27942sup3.hkl
Supporting information file. DOI: 10.1107/S1600536814022570/su27941sup4.cml
Supporting information file. DOI: 10.1107/S1600536814022570/su27942sup5.cml
1,2-Amino
are found in a variety of pharmaceutically active compounds (Lee & Kang, 2004) and have been used extensively as components of chiral ligands and auxiliaries in (Ager et al., 1996; Pu & Yu, 2001). In order to develop new chiral ligands and as part of an advanced undergraduate laboratory course, we sought to make a series of 2-aryl-1-methyl-1,2-amino The most straightforward synthesis of these compounds was reported by Ellman (Tang et al., 2001; Evans & Ellman, 2003). The method relies upon the chiral ammonia equivalent, 2-methyl-2-propanesulfinamide (tert-butanesulfinamide), which is readily available from a variety of commercial sources or easily synthesized on scale (Weix et al., 2005). In the original Ellman report, the of the products was determined by deprotection of the amine and alcohol, to form the corresponding oxazolidinone, and correlation of the 1H NMR spectra with the literature (Zietlow & Steckhan, 1994).We now report herein on the syntheses and structures of two different but related protected 1,2-amino
(1) and (2), from the addition of an arylmagnesium bromide to an N-(tert-butanesulfinyl imine (Evans & Ellman, 2003). The reaction of imine (3a) with xylylmagnesium bromide, (4a) (see Fig. 1) resulted in a mixture of amino alcohol products from which the major product of the reaction, (1), was isolated in 27% yield after chromatographic separation of the The stereochemistry of this major product was confirmed by X-ray diffraction and the result is consistent with the sense of induction reported by Evans & Ellman (2003).The analogous reaction with mesitylmagnesium bromide, (4b), also resulted in a mixture of products, from which the major product, (6), could be isolated in 43% yield. A mixture of other
was also isolated, from which a crystal suitable for X-ray diffraction was grown. Unexpectedly, X-ray analysis showed this crystal to be (2), a product that could only have derived from a diastereomerically different isomer of (3a). Upon further investigation, we discovered that the starting material, which we had assumed was pure (3a), contained the minor diastereomer, (3b), in about 8% (determined by 1H NMR; Fontenelle et al., 2014), which had formed due to in the synthesis of (3a). Based on the work of Evans & Ellman (2003), it was deduced that (2) is the minor product expected from the reaction of (3b) with an arylmagnesium bromide. Although no further separations were performed on this mixture that contained (2), it follows that the other present were (7), the minor product from the reaction with (3a), and (8), the major product from the reaction with the slight impurity of (3b).The molecular structures of compounds (1) and (2) are illustrated in Figs. 2 and 3, respectively. The essential difference in the conformation of the two compounds is that the phenyl ring (C5–C10) is inclined to the benzene ring (C11–C16) by 28.52 (7)° in (1) and by 44.65 (19)° in (2).
In the crystals of both (1) and (2), chains are formed via intermolecular hydrogen bonding (Tables 1 and 2). In (1), molecules are linked along the [100] direction by a combination of classical (N—H···O═S) and non-classical (C—H···O═S) hydrogen bonds (Table 1 and Fig. 4). In (2), molecules are linked along the [010] direction also by classical (N—H···O═S) and non-classical (C—H···O═S) hydrogen bonds (Table 2 and Fig. 5).
Although there are 78 structures of N-sulfinyl-protected 1,2-amino
in the Cambridge Structural Database (CSD, Version 5.35, last update May 2014; Groom & Allen, 2014), only seven of these structures have substitution at the 1-position and an aryl group at the 2-position. Of these compounds, only three have a tert-butanesulfinyl group [CSD refcodes CAVQOG (Zhong et al., 2005), FIZBIB (Jiang et al., 2014) and WOBNEI (Buesking & Ellman, 2014)], and the other four contain p-toluenesulfinyl groups [CSD refcodes PAQZIR (Zhao et al., 2005), RUXZUG (Ghorai et al., 2010), WADYOR (Fadlalla et al., 2010) and SICSII (Guo et al., 2012)]. However, none of these seven compounds were synthesized by our method of interest.\ The starting sulfinamide, (R,E)-N-(2-(benzyloxy)propylidene)-2-methylpropane-2-\ sulfinamide, (3a), was prepared from S-ethyl lactate (Enders et al., 2002; Evans & Ellman, 2003).
(4a) and (4b) were prepared from 2-bromoxylene and 2-bromomesitylene, respectively (Tilstam & Weinmann, 2002). The synthesis of the title compounds is illustrated in Fig. 1.General procedure
To an oven-dried 50 ml Schlenk flask equipped with a magnetic stirrer bar and a rubber septum, sulfinamide (3a) and toluene (20 ml) were added and the mixture was cooled to 195 K under nitrogen. The Grignard reagent (4a) or (4b) in toluene was placed under positive nitrogen pressure and was added to the Schlenk flask dropwise by cannula at 195 K. The reaction was stirred at 195 K and stopped when complete consumption of the imine was confirmed by δ = 3.78 p.p.m., while those for syn were found slightly further upfield at δ = 3.61 (mixture, see below) and 3.66 (5) p.p.m.. The crude viscous yellow oil was purified by Crystals suitable for single-crystal X-ray diffraction were obtained from slow evaporation of methanol solutions.
(30% ethyl acetate in hexanes, stained with ceric ammonium molybdate). The reaction was quenched with aqueous saturated sodium sulfate (1.5 ml), then the mixture was warmed to room temperature, dried over sodium sulfate, filtered through Celite, and the solvent was removed under reduced pressure. The ratio of was determined by 1H NMR of the crude material, specifically by examining the amine (N—H) proton resonances. The chemical shifts of anti like (1) and (6) were found around(RS)-N-\ [(1R,2S)-2-benzyloxy-1-(2,6-\ dimethylphenyl)propyl]-2-methylpropane-2-sulfinamide (1):
The reaction of sulfinamide (3a) (0.631 g, 2.36 mmol) with xylylmagnesium bromide [(4a), 3.80 equiv, 8.87 mmol], performed according to the general procedure, yielded a 2.5:1 ratio of
(1) to (5), respectively (see Fig. 1). The light-yellow oil was purified by (100% diethyl ether) to yield a light-yellow solid (239 mg, 27%).(1): m.p.: 346–348 K, 1H NMR (500 MHz, CDCl3): δ 1.20 (d, J = 0.3, 9H), 1.32 (d, J = 6.1, 3H), 2.36 (s, 3H), 2.43 (s, 3H), 3.71–3.70 (m, 1H), 3.99 (td, J = 6.7, 0.3, 1H), 4.27 (d, J = 11.8, 1H), 4.39 (d, J = 11.8, 1H), 4.92–4.89 (m, 1H), 6.96–6.94 (m, 1H), 7.02–7.01 (m, 3H), 7.08 (d, J = 7.6, 1H), 7.22 (d, J = 4.6, 3H). 13C NMR (126 MHz, CDCl3): δ 17.65, 21.62, 21.77, 22.71, 55.48, 59.01, 71.27, 76.41, 127.49, 127.60, 127.85, 128.35, 128.50, 130.43, 134.91, 137.22, 138.32, 138.57. IR (neat): 3271, 1084, 1041 cm-1. Analysis calculated for C22H31NO2S (%), 70.74 C, 8.36 H, 3.75 N, found (%) 70.99 C, 8.58 H, 3.66 N.
(RS)-N-\ [(1S,2R)-2-benzyloxy-1-(2,4,6-\ trimethylphenyl)propyl]-2-methylpropane-2-sulfinamide (2):
The reaction of sulfinamide (3a) (0.757 g, 2.83 mmol), which contained an impurity (8%) of sulfinamide (3b), with mesitylmagnesium bromide [(4b), 3.00 equiv, 8.50 mmol] in toluene, performed according to the general procedure, yielded a mixture of anti and syn
The light-yellow oil was purified by (80% diethyl ether in hexanes) to yield two white solids. The first was the expected major product (6) (467 mg, 43%). The second (207 mg, 19%) was determined to be a mixture of (based on 1H NMR) that contained (2) (confirmed by X-ray crystallography) and two others, likely (7) and (8) (see Fig. 1). No further characterization or separation was performed on this mixture.(6): 1H NMR (500 MHz, CDCl3): δ 1.17 (s, 9H), 1.29 (d, J = 6.1, 3H), 2.26 (s, 3H), 2.33 (s, 3H), 2.39 (s, 3H), 3.72–3.71 (m, 1H), 3.98–3.95 (m, 1H), 4.29 (d, J = 11.9, 1H), 4.39 (d, J = 11.8, 1H), 4.88–4.86 (m, 1H), 6.77 (s, 1H), 6.84 (s, 1H), 7.06 (d, J = 4.3, 2H), 7.22 (s, 3H). 13C NMR (126 MHz, CDCl3): δ 17.61, 20.97, 21.56, 21.65, 22.76, 55.44, 58.65, 58.67, 71.30, 76.66, 127.58, 127.88, 128.34, 129.38, 130.80, 131.22, 137.13, 138.45. IR (neat): 3271, 1057 cm-1. Analysis calculated for C23H33NO2S (%), 71.27 C, 8.58 H, 3.61 N, found (%) 70.55 C, 8.62 H, 3.49 N.
Crystal data, data collection and structure
details are summarized in Table 3. For (1), the was determined using 4260 quotients, which gave a of 0.005 (12). The value obtained without Dobs(h) as a restraint was -0.02 (3), calculated from 5203 Friedel pairs. For (2), the was determined using 1713 quotients, which gave a of 0.03 (6). The value obtained without Dobs(h) as a restraint was -0.04 (8), calculated from 2882 Friedel pairs. In (2), the needle-shaped crystal diffracted weakly at higher angles. The cut-off resolution of 0.72 Å was chosen to maximize the number of enantiomer-determining reflections, while limiting the inclusion of very weak high-angle data. The largest residual peak of 0.72 e Å-3 is located in the S1—C20 bond.For both structures, the amine H atoms were located from difference Fourier maps and freely refined. The C-bound H atoms were placed geometrically and treated as riding with C—H = 0.95–1.00 Å and with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(C) for other H atoms.
For both compounds, data collection: APEX2 (Bruker, 2014); cell
SAINT (Bruker, 2014); data reduction: SAINT (Bruker, 2014); program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).(Top) Reaction scheme depicting the synthesis of (1) and (5) from (3a), for which (1) is the major product of the reaction. (Bottom) Reaction scheme depicting the synthesis of (6) and (7) from (3a), and (8) and (2) from (3b), for which (6) is the major product of the reaction from (3a), and (8) is the major product from (3b). The molecular structure of compound (1), with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The molecular structure of compound (2), with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. A partial view of the crystal packing of compound (1), illustrating the formation of the hydrogen-bonded chains along [100] (hydrogen bonds are shown as dashed lines; see Table 1 for details). Displacement ellipsoids are drawn at the 50% probability level. A partial view of the crystal packing of compound (2), illustrating the formation of the hydrogen-bonded chains along [010] (hydrogen bonds are shown as dashed lines; see Table 2 for details). Displacement ellipsoids are drawn at the 50% probability level. |
C22H31NO2S | Dx = 1.170 Mg m−3 |
Mr = 373.54 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 3707 reflections |
a = 9.1567 (13) Å | θ = 2.4–38.1° |
b = 10.2951 (15) Å | µ = 0.17 mm−1 |
c = 22.494 (3) Å | T = 100 K |
V = 2120.5 (5) Å3 | Block, colourless |
Z = 4 | 0.40 × 0.25 × 0.20 mm |
F(000) = 808 |
Bruker APEXII CCD diffractometer | 10413 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.041 |
ϕ and ω scans | θmax = 38.7°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | h = −16→15 |
Tmin = 0.642, Tmax = 0.748 | k = −17→17 |
74315 measured reflections | l = −39→39 |
11731 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.096 | w = 1/[σ2(Fo2) + (0.0463P)2 + 0.2202P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max < 0.001 |
11731 reflections | Δρmax = 0.40 e Å−3 |
245 parameters | Δρmin = −0.30 e Å−3 |
0 restraints | Absolute structure: Flack x determined using 4260 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.005 (12) |
C22H31NO2S | V = 2120.5 (5) Å3 |
Mr = 373.54 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 9.1567 (13) Å | µ = 0.17 mm−1 |
b = 10.2951 (15) Å | T = 100 K |
c = 22.494 (3) Å | 0.40 × 0.25 × 0.20 mm |
Bruker APEXII CCD diffractometer | 11731 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | 10413 reflections with I > 2σ(I) |
Tmin = 0.642, Tmax = 0.748 | Rint = 0.041 |
74315 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.096 | Δρmax = 0.40 e Å−3 |
S = 1.09 | Δρmin = −0.30 e Å−3 |
11731 reflections | Absolute structure: Flack x determined using 4260 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
245 parameters | Absolute structure parameter: 0.005 (12) |
0 restraints |
Experimental. Dry solvents were prepared from ACS grade, inhibitor free solvents by passage through activated molecular sieves in an Innovative Technology solvent purification system. CDCl3 was purchased from Cambridge Isotope Laboratories, Inc., and dried over molecular sieves. 1H and 13C NMR spectra were recorded on an Avance 500 MHz spectrometer with residual protiated solvent as a reference. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. The amine H atom was found from the difference Fourier map and refined freely. All other H atoms were placed geometrically and treated as riding atoms: methine, C—H = 1.00 Å with Uiso(H) = 1.2Ueq(C), methylene, C—H = 0.99 Å with Uiso(H) = 1.2Ueq(C), methyl, C—H = 0.98 Å with Uiso(H) = 1.5Ueq(C), sp2, C—H = 0.95 Å with Uiso(H) = 1.2Ueq(C). The absolute configuration was deterimined using 4260 quotients, which gave a Flack parameter of 0.005 (12) (Parsons and Flack, 2004, Parsons et al., 2013). The value obtained without Dobs(h) as a restraint was -0.02 (3), calculated from 5203 Friedel pairs (Flack, 1983). |
x | y | z | Uiso*/Ueq | ||
S1 | 0.79149 (3) | 0.10142 (3) | 0.03041 (2) | 0.01557 (5) | |
O1 | 0.91190 (11) | 0.06660 (10) | −0.18104 (4) | 0.02226 (18) | |
O2 | 0.68782 (10) | 0.21396 (10) | 0.02920 (4) | 0.02241 (17) | |
N1 | 0.92290 (11) | 0.11541 (10) | −0.01896 (4) | 0.01623 (16) | |
H1 | 0.977 (2) | 0.1819 (19) | −0.0167 (8) | 0.021 (4)* | |
C1 | 0.89269 (12) | 0.05350 (11) | −0.07694 (5) | 0.01571 (17) | |
H1A | 0.7843 | 0.0558 | −0.0823 | 0.019* | |
C2 | 0.95786 (13) | 0.13364 (12) | −0.12820 (5) | 0.01660 (18) | |
H2A | 1.0669 | 0.1337 | −0.1255 | 0.020* | |
C3 | 0.90089 (15) | 0.27252 (13) | −0.12894 (6) | 0.0217 (2) | |
H3A | 0.9377 | 0.3191 | −0.0940 | 0.033* | |
H3B | 0.7939 | 0.2716 | −0.1281 | 0.033* | |
H3C | 0.9344 | 0.3162 | −0.1652 | 0.033* | |
C4 | 1.00691 (18) | 0.08699 (16) | −0.23019 (6) | 0.0281 (3) | |
H4A | 1.0292 | 0.1809 | −0.2332 | 0.034* | |
H4B | 0.9559 | 0.0609 | −0.2671 | 0.034* | |
C5 | 1.14836 (16) | 0.01255 (14) | −0.22566 (5) | 0.0225 (2) | |
C6 | 1.14793 (17) | −0.11740 (14) | −0.20832 (6) | 0.0253 (2) | |
H6A | 1.0585 | −0.1582 | −0.1977 | 0.030* | |
C7 | 1.2770 (2) | −0.18760 (17) | −0.20640 (7) | 0.0326 (3) | |
H7A | 1.2755 | −0.2765 | −0.1951 | 0.039* | |
C8 | 1.40849 (19) | −0.12847 (19) | −0.22088 (7) | 0.0349 (4) | |
H8A | 1.4968 | −0.1769 | −0.2198 | 0.042* | |
C9 | 1.4105 (2) | 0.0017 (2) | −0.23699 (8) | 0.0382 (4) | |
H9A | 1.5004 | 0.0428 | −0.2463 | 0.046* | |
C10 | 1.2812 (2) | 0.07163 (15) | −0.23950 (7) | 0.0319 (3) | |
H10A | 1.2831 | 0.1606 | −0.2507 | 0.038* | |
C11 | 0.93628 (12) | −0.08950 (11) | −0.07699 (5) | 0.01664 (18) | |
C12 | 0.82885 (15) | −0.18286 (13) | −0.09100 (6) | 0.0229 (2) | |
C13 | 0.86506 (17) | −0.31517 (14) | −0.09039 (7) | 0.0290 (3) | |
H13A | 0.7934 | −0.3778 | −0.1009 | 0.035* | |
C14 | 1.00387 (18) | −0.35576 (14) | −0.07467 (8) | 0.0300 (3) | |
H14A | 1.0265 | −0.4458 | −0.0733 | 0.036* | |
C15 | 1.10962 (16) | −0.26432 (13) | −0.06090 (7) | 0.0247 (2) | |
H15A | 1.2046 | −0.2925 | −0.0499 | 0.030* | |
C16 | 1.07903 (13) | −0.13087 (11) | −0.06295 (5) | 0.01810 (19) | |
C17 | 0.67364 (17) | −0.14536 (17) | −0.10624 (9) | 0.0355 (4) | |
H17A | 0.6180 | −0.2234 | −0.1166 | 0.053* | |
H17B | 0.6740 | −0.0855 | −0.1401 | 0.053* | |
H17C | 0.6283 | −0.1028 | −0.0719 | 0.053* | |
C18 | 1.20616 (14) | −0.04049 (12) | −0.05286 (6) | 0.0209 (2) | |
H18A | 1.1704 | 0.0421 | −0.0368 | 0.031* | |
H18B | 1.2564 | −0.0248 | −0.0907 | 0.031* | |
H18C | 1.2743 | −0.0800 | −0.0246 | 0.031* | |
C19 | 0.90048 (13) | 0.12273 (13) | 0.09851 (5) | 0.0195 (2) | |
C20 | 1.01500 (19) | 0.01501 (19) | 0.09980 (7) | 0.0349 (4) | |
H20A | 1.0883 | 0.0312 | 0.0689 | 0.052* | |
H20B | 0.9677 | −0.0689 | 0.0925 | 0.052* | |
H20C | 1.0625 | 0.0135 | 0.1388 | 0.052* | |
C22 | 0.78986 (16) | 0.10520 (16) | 0.14911 (5) | 0.0259 (2) | |
H22A | 0.7145 | 0.1725 | 0.1463 | 0.039* | |
H22B | 0.8401 | 0.1126 | 0.1874 | 0.039* | |
H22C | 0.7443 | 0.0193 | 0.1460 | 0.039* | |
C23 | 0.96837 (16) | 0.25766 (16) | 0.10044 (6) | 0.0267 (3) | |
H23A | 0.8923 | 0.3232 | 0.0941 | 0.040* | |
H23B | 1.0423 | 0.2651 | 0.0691 | 0.040* | |
H23C | 1.0142 | 0.2715 | 0.1393 | 0.040* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01487 (10) | 0.01513 (10) | 0.01672 (10) | 0.00088 (9) | 0.00119 (9) | 0.00003 (9) |
O1 | 0.0245 (4) | 0.0271 (5) | 0.0152 (3) | −0.0001 (3) | −0.0034 (3) | −0.0033 (3) |
O2 | 0.0182 (4) | 0.0259 (4) | 0.0231 (4) | 0.0091 (3) | −0.0017 (3) | −0.0013 (3) |
N1 | 0.0168 (4) | 0.0165 (4) | 0.0154 (3) | −0.0027 (3) | 0.0016 (3) | −0.0019 (3) |
C1 | 0.0152 (4) | 0.0166 (4) | 0.0154 (4) | −0.0020 (3) | −0.0009 (3) | −0.0014 (3) |
C2 | 0.0169 (4) | 0.0184 (5) | 0.0146 (4) | −0.0004 (3) | −0.0011 (3) | 0.0000 (3) |
C3 | 0.0229 (5) | 0.0184 (5) | 0.0239 (5) | 0.0019 (4) | −0.0007 (4) | 0.0023 (4) |
C4 | 0.0382 (7) | 0.0317 (7) | 0.0144 (4) | 0.0072 (6) | 0.0002 (4) | 0.0015 (4) |
C5 | 0.0301 (6) | 0.0240 (6) | 0.0135 (4) | 0.0004 (5) | 0.0017 (4) | −0.0037 (4) |
C6 | 0.0323 (6) | 0.0226 (6) | 0.0209 (5) | −0.0008 (5) | 0.0010 (4) | −0.0038 (4) |
C7 | 0.0416 (8) | 0.0305 (7) | 0.0257 (6) | 0.0083 (6) | 0.0018 (6) | −0.0029 (5) |
C8 | 0.0314 (7) | 0.0483 (10) | 0.0250 (6) | 0.0096 (7) | 0.0002 (5) | −0.0110 (6) |
C9 | 0.0316 (7) | 0.0491 (10) | 0.0340 (8) | −0.0079 (7) | 0.0110 (6) | −0.0155 (7) |
C10 | 0.0405 (8) | 0.0281 (7) | 0.0271 (6) | −0.0050 (6) | 0.0128 (6) | −0.0057 (5) |
C11 | 0.0179 (4) | 0.0146 (4) | 0.0174 (4) | −0.0029 (3) | −0.0008 (3) | −0.0011 (3) |
C12 | 0.0229 (5) | 0.0199 (5) | 0.0260 (5) | −0.0079 (4) | −0.0033 (4) | 0.0004 (4) |
C13 | 0.0312 (7) | 0.0193 (6) | 0.0365 (7) | −0.0105 (5) | −0.0017 (6) | −0.0015 (5) |
C14 | 0.0348 (7) | 0.0145 (5) | 0.0406 (8) | −0.0033 (5) | 0.0023 (6) | −0.0007 (5) |
C15 | 0.0250 (6) | 0.0156 (5) | 0.0336 (6) | 0.0002 (4) | 0.0010 (5) | 0.0000 (4) |
C16 | 0.0190 (5) | 0.0144 (4) | 0.0209 (5) | −0.0013 (3) | 0.0002 (4) | −0.0014 (3) |
C17 | 0.0242 (6) | 0.0292 (7) | 0.0531 (9) | −0.0119 (5) | −0.0154 (6) | 0.0066 (7) |
C18 | 0.0168 (4) | 0.0177 (5) | 0.0283 (5) | −0.0006 (4) | −0.0026 (4) | −0.0021 (4) |
C19 | 0.0182 (4) | 0.0241 (6) | 0.0162 (4) | 0.0074 (4) | −0.0004 (3) | 0.0003 (4) |
C20 | 0.0365 (8) | 0.0441 (9) | 0.0242 (6) | 0.0263 (7) | −0.0023 (5) | 0.0011 (6) |
C22 | 0.0270 (5) | 0.0338 (6) | 0.0169 (4) | 0.0053 (6) | 0.0028 (4) | 0.0038 (4) |
C23 | 0.0219 (5) | 0.0349 (7) | 0.0232 (5) | −0.0027 (5) | −0.0020 (4) | −0.0066 (5) |
S1—O2 | 1.4980 (9) | C11—C16 | 1.4106 (17) |
S1—N1 | 1.6436 (10) | C11—C12 | 1.4109 (16) |
S1—C19 | 1.8415 (12) | C12—C13 | 1.402 (2) |
O1—C4 | 1.4225 (17) | C12—C17 | 1.512 (2) |
O1—C2 | 1.4374 (14) | C13—C14 | 1.384 (2) |
N1—C1 | 1.4778 (14) | C13—H13A | 0.9500 |
N1—H1 | 0.84 (2) | C14—C15 | 1.386 (2) |
C1—C11 | 1.5253 (17) | C14—H14A | 0.9500 |
C1—C2 | 1.5383 (16) | C15—C16 | 1.4029 (18) |
C1—H1A | 1.0000 | C15—H15A | 0.9500 |
C2—C3 | 1.5221 (18) | C16—C18 | 1.5075 (17) |
C2—H2A | 1.0000 | C17—H17A | 0.9800 |
C3—H3A | 0.9800 | C17—H17B | 0.9800 |
C3—H3B | 0.9800 | C17—H17C | 0.9800 |
C3—H3C | 0.9800 | C18—H18A | 0.9800 |
C4—C5 | 1.508 (2) | C18—H18B | 0.9800 |
C4—H4A | 0.9900 | C18—H18C | 0.9800 |
C4—H4B | 0.9900 | C19—C23 | 1.522 (2) |
C5—C6 | 1.394 (2) | C19—C20 | 1.5266 (18) |
C5—C10 | 1.395 (2) | C19—C22 | 1.5342 (17) |
C6—C7 | 1.386 (2) | C20—H20A | 0.9800 |
C6—H6A | 0.9500 | C20—H20B | 0.9800 |
C7—C8 | 1.388 (3) | C20—H20C | 0.9800 |
C7—H7A | 0.9500 | C22—H22A | 0.9800 |
C8—C9 | 1.388 (3) | C22—H22B | 0.9800 |
C8—H8A | 0.9500 | C22—H22C | 0.9800 |
C9—C10 | 1.387 (3) | C23—H23A | 0.9800 |
C9—H9A | 0.9500 | C23—H23B | 0.9800 |
C10—H10A | 0.9500 | C23—H23C | 0.9800 |
O2—S1—N1 | 112.57 (5) | C13—C12—C11 | 119.66 (13) |
O2—S1—C19 | 105.45 (5) | C13—C12—C17 | 118.20 (12) |
N1—S1—C19 | 98.91 (5) | C11—C12—C17 | 122.14 (13) |
C4—O1—C2 | 113.13 (10) | C14—C13—C12 | 120.87 (13) |
C1—N1—S1 | 114.92 (8) | C14—C13—H13A | 119.6 |
C1—N1—H1 | 120.8 (13) | C12—C13—H13A | 119.6 |
S1—N1—H1 | 117.1 (13) | C13—C14—C15 | 119.59 (13) |
N1—C1—C11 | 111.58 (9) | C13—C14—H14A | 120.2 |
N1—C1—C2 | 110.96 (9) | C15—C14—H14A | 120.2 |
C11—C1—C2 | 114.56 (9) | C14—C15—C16 | 121.23 (13) |
N1—C1—H1A | 106.4 | C14—C15—H15A | 119.4 |
C11—C1—H1A | 106.4 | C16—C15—H15A | 119.4 |
C2—C1—H1A | 106.4 | C15—C16—C11 | 119.22 (11) |
O1—C2—C3 | 109.98 (10) | C15—C16—C18 | 116.44 (11) |
O1—C2—C1 | 104.41 (9) | C11—C16—C18 | 124.26 (11) |
C3—C2—C1 | 112.28 (10) | C12—C17—H17A | 109.5 |
O1—C2—H2A | 110.0 | C12—C17—H17B | 109.5 |
C3—C2—H2A | 110.0 | H17A—C17—H17B | 109.5 |
C1—C2—H2A | 110.0 | C12—C17—H17C | 109.5 |
C2—C3—H3A | 109.5 | H17A—C17—H17C | 109.5 |
C2—C3—H3B | 109.5 | H17B—C17—H17C | 109.5 |
H3A—C3—H3B | 109.5 | C16—C18—H18A | 109.5 |
C2—C3—H3C | 109.5 | C16—C18—H18B | 109.5 |
H3A—C3—H3C | 109.5 | H18A—C18—H18B | 109.5 |
H3B—C3—H3C | 109.5 | C16—C18—H18C | 109.5 |
O1—C4—C5 | 113.43 (11) | H18A—C18—H18C | 109.5 |
O1—C4—H4A | 108.9 | H18B—C18—H18C | 109.5 |
C5—C4—H4A | 108.9 | C23—C19—C20 | 112.44 (13) |
O1—C4—H4B | 108.9 | C23—C19—C22 | 110.84 (11) |
C5—C4—H4B | 108.9 | C20—C19—C22 | 110.73 (11) |
H4A—C4—H4B | 107.7 | C23—C19—S1 | 110.71 (9) |
C6—C5—C10 | 118.92 (14) | C20—C19—S1 | 107.55 (9) |
C6—C5—C4 | 120.28 (13) | C22—C19—S1 | 104.21 (9) |
C10—C5—C4 | 120.80 (13) | C19—C20—H20A | 109.5 |
C7—C6—C5 | 120.45 (15) | C19—C20—H20B | 109.5 |
C7—C6—H6A | 119.8 | H20A—C20—H20B | 109.5 |
C5—C6—H6A | 119.8 | C19—C20—H20C | 109.5 |
C6—C7—C8 | 120.25 (15) | H20A—C20—H20C | 109.5 |
C6—C7—H7A | 119.9 | H20B—C20—H20C | 109.5 |
C8—C7—H7A | 119.9 | C19—C22—H22A | 109.5 |
C7—C8—C9 | 119.74 (16) | C19—C22—H22B | 109.5 |
C7—C8—H8A | 120.1 | H22A—C22—H22B | 109.5 |
C9—C8—H8A | 120.1 | C19—C22—H22C | 109.5 |
C10—C9—C8 | 120.05 (16) | H22A—C22—H22C | 109.5 |
C10—C9—H9A | 120.0 | H22B—C22—H22C | 109.5 |
C8—C9—H9A | 120.0 | C19—C23—H23A | 109.5 |
C9—C10—C5 | 120.57 (15) | C19—C23—H23B | 109.5 |
C9—C10—H10A | 119.7 | H23A—C23—H23B | 109.5 |
C5—C10—H10A | 119.7 | C19—C23—H23C | 109.5 |
C16—C11—C12 | 119.36 (11) | H23A—C23—H23C | 109.5 |
C16—C11—C1 | 122.26 (10) | H23B—C23—H23C | 109.5 |
C12—C11—C1 | 118.37 (11) | ||
O2—S1—N1—C1 | −92.54 (9) | N1—C1—C11—C12 | 123.09 (11) |
C19—S1—N1—C1 | 156.53 (9) | C2—C1—C11—C12 | −109.78 (12) |
S1—N1—C1—C11 | −86.77 (10) | C16—C11—C12—C13 | 0.43 (19) |
S1—N1—C1—C2 | 144.18 (8) | C1—C11—C12—C13 | −178.90 (12) |
C4—O1—C2—C3 | 85.24 (13) | C16—C11—C12—C17 | 179.78 (14) |
C4—O1—C2—C1 | −154.11 (10) | C1—C11—C12—C17 | 0.45 (19) |
N1—C1—C2—O1 | −176.40 (9) | C11—C12—C13—C14 | 1.7 (2) |
C11—C1—C2—O1 | 56.15 (12) | C17—C12—C13—C14 | −177.64 (16) |
N1—C1—C2—C3 | −57.29 (13) | C12—C13—C14—C15 | −1.7 (2) |
C11—C1—C2—C3 | 175.25 (10) | C13—C14—C15—C16 | −0.4 (2) |
C2—O1—C4—C5 | 74.91 (15) | C14—C15—C16—C11 | 2.6 (2) |
O1—C4—C5—C6 | 44.88 (17) | C14—C15—C16—C18 | −174.29 (13) |
O1—C4—C5—C10 | −136.05 (14) | C12—C11—C16—C15 | −2.54 (18) |
C10—C5—C6—C7 | −1.68 (19) | C1—C11—C16—C15 | 176.77 (11) |
C4—C5—C6—C7 | 177.41 (12) | C12—C11—C16—C18 | 174.06 (12) |
C5—C6—C7—C8 | 1.0 (2) | C1—C11—C16—C18 | −6.63 (18) |
C6—C7—C8—C9 | 0.4 (2) | O2—S1—C19—C23 | −53.16 (10) |
C7—C8—C9—C10 | −1.0 (2) | N1—S1—C19—C23 | 63.36 (9) |
C8—C9—C10—C5 | 0.3 (2) | O2—S1—C19—C20 | −176.36 (10) |
C6—C5—C10—C9 | 1.0 (2) | N1—S1—C19—C20 | −59.85 (11) |
C4—C5—C10—C9 | −178.05 (13) | O2—S1—C19—C22 | 66.06 (10) |
N1—C1—C11—C16 | −56.23 (14) | N1—S1—C19—C22 | −177.43 (9) |
C2—C1—C11—C16 | 70.90 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.84 (2) | 2.23 (2) | 3.0039 (15) | 152.8 (7) |
C18—H18A···O2i | 0.98 | 2.52 | 3.4077 (17) | 150 |
C23—H23B···O2i | 0.98 | 2.59 | 3.5534 (17) | 167 |
Symmetry code: (i) x+1/2, −y+1/2, −z. |
C23H33NO2S | F(000) = 420 |
Mr = 387.56 | Dx = 1.167 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.535 (3) Å | Cell parameters from 4086 reflections |
b = 7.984 (2) Å | θ = 2.2–28.7° |
c = 13.481 (4) Å | µ = 0.16 mm−1 |
β = 103.519 (5)° | T = 100 K |
V = 1102.5 (5) Å3 | Needle, colorless |
Z = 2 | 0.50 × 0.14 × 0.10 mm |
Bruker SMART APEXII CCD platform diffractometer | 4675 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.074 |
ω scans | θmax = 29.6°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | h = −14→14 |
Tmin = 0.564, Tmax = 0.746 | k = −11→11 |
18025 measured reflections | l = −18→18 |
6191 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.126 | w = 1/[σ2(Fo2) + (0.0563P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max < 0.001 |
6191 reflections | Δρmax = 0.72 e Å−3 |
255 parameters | Δρmin = −0.32 e Å−3 |
1 restraint | Absolute structure: Flack x determined using 1713 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.03 (6) |
C23H33NO2S | V = 1102.5 (5) Å3 |
Mr = 387.56 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 10.535 (3) Å | µ = 0.16 mm−1 |
b = 7.984 (2) Å | T = 100 K |
c = 13.481 (4) Å | 0.50 × 0.14 × 0.10 mm |
β = 103.519 (5)° |
Bruker SMART APEXII CCD platform diffractometer | 6191 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | 4675 reflections with I > 2σ(I) |
Tmin = 0.564, Tmax = 0.746 | Rint = 0.074 |
18025 measured reflections |
R[F2 > 2σ(F2)] = 0.055 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.126 | Δρmax = 0.72 e Å−3 |
S = 1.01 | Δρmin = −0.32 e Å−3 |
6191 reflections | Absolute structure: Flack x determined using 1713 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
255 parameters | Absolute structure parameter: 0.03 (6) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. The amine H atom was found from the difference Fourier map and refined freely. All other H atoms were placed geometrically and treated as riding atoms: methine, C—H = 1.00 Å with Uiso(H) = 1.2Ueq(C), methylene, C—H = 0.99 Å with Uiso(H) = 1.2Ueq(C), methyl, C—H = 0.98 Å with Uiso(H) = 1.5Ueq(C), sp2, C—H = 0.95 Å with Uiso(H) = 1.2Ueq(C). The absolute configuration was deterimined using 1713 quotients, which gave a Flack parameter of 0.03 (6) (Parsons and Flack, 2004, Parsons et al., 2013). The value obtained without Dobs(h) as a restraint was -0.04 (8), calculated from 2882 Friedel pairs (Flack, 1983). |
x | y | z | Uiso*/Ueq | ||
S1 | 0.14253 (7) | 0.70038 (11) | 0.52944 (5) | 0.01937 (18) | |
O1 | −0.1200 (3) | 0.7675 (3) | 0.79000 (17) | 0.0277 (6) | |
O2 | 0.1009 (2) | 0.5256 (3) | 0.54810 (18) | 0.0255 (5) | |
N1 | 0.0861 (3) | 0.8363 (4) | 0.6010 (2) | 0.0193 (6) | |
H1 | 0.029 (4) | 0.895 (5) | 0.565 (3) | 0.029 (11)* | |
C1 | 0.0582 (3) | 0.7907 (4) | 0.7007 (2) | 0.0187 (7) | |
H1A | 0.0758 | 0.6681 | 0.7107 | 0.022* | |
C2 | −0.0893 (4) | 0.8173 (5) | 0.6958 (2) | 0.0228 (7) | |
H2A | −0.1121 | 0.9380 | 0.6822 | 0.027* | |
C3 | −0.1748 (3) | 0.7098 (6) | 0.6136 (2) | 0.0281 (7) | |
H3A | −0.2659 | 0.7182 | 0.6187 | 0.042* | |
H3B | −0.1462 | 0.5929 | 0.6228 | 0.042* | |
H3C | −0.1675 | 0.7490 | 0.5463 | 0.042* | |
C4 | −0.1156 (4) | 0.8932 (5) | 0.8670 (3) | 0.0309 (9) | |
H4A | −0.0238 | 0.9283 | 0.8935 | 0.037* | |
H4B | −0.1465 | 0.8434 | 0.9243 | 0.037* | |
C5 | −0.1973 (4) | 1.0465 (5) | 0.8290 (3) | 0.0277 (8) | |
C6 | −0.1330 (4) | 1.1992 (6) | 0.8314 (3) | 0.0399 (9) | |
H6A | −0.0414 | 1.2050 | 0.8587 | 0.048* | |
C7 | −0.2017 (6) | 1.3429 (6) | 0.7941 (4) | 0.0542 (14) | |
H7A | −0.1575 | 1.4467 | 0.7949 | 0.065* | |
C8 | −0.3341 (6) | 1.3334 (6) | 0.7562 (3) | 0.0516 (14) | |
H8A | −0.3812 | 1.4306 | 0.7284 | 0.062* | |
C9 | −0.4009 (5) | 1.1822 (8) | 0.7580 (3) | 0.0538 (14) | |
H9A | −0.4931 | 1.1777 | 0.7342 | 0.065* | |
C10 | −0.3300 (4) | 1.0372 (6) | 0.7954 (3) | 0.0375 (10) | |
H10A | −0.3739 | 0.9337 | 0.7972 | 0.045* | |
C11 | 0.1486 (3) | 0.8807 (4) | 0.7901 (2) | 0.0191 (7) | |
C12 | 0.2023 (4) | 0.7877 (4) | 0.8796 (2) | 0.0203 (7) | |
C13 | 0.2873 (3) | 0.8671 (5) | 0.9617 (2) | 0.0238 (7) | |
H13A | 0.3229 | 0.8043 | 1.0216 | 0.029* | |
C14 | 0.3208 (4) | 1.0342 (5) | 0.9582 (2) | 0.0276 (8) | |
C15 | 0.2652 (3) | 1.1243 (5) | 0.8705 (3) | 0.0253 (8) | |
H15A | 0.2866 | 1.2395 | 0.8672 | 0.030* | |
C16 | 0.1790 (3) | 1.0514 (4) | 0.7869 (2) | 0.0196 (7) | |
C17 | 0.1703 (4) | 0.6060 (5) | 0.8916 (3) | 0.0264 (8) | |
H17A | 0.2246 | 0.5630 | 0.9557 | 0.040* | |
H17B | 0.1876 | 0.5416 | 0.8343 | 0.040* | |
H17C | 0.0780 | 0.5953 | 0.8927 | 0.040* | |
C18 | 0.4126 (4) | 1.1175 (6) | 1.0483 (3) | 0.0416 (11) | |
H18A | 0.4920 | 1.0499 | 1.0695 | 0.062* | |
H18B | 0.3696 | 1.1268 | 1.1051 | 0.062* | |
H18C | 0.4356 | 1.2295 | 1.0285 | 0.062* | |
C19 | 0.1231 (4) | 1.1646 (4) | 0.6973 (2) | 0.0254 (8) | |
H19A | 0.1332 | 1.2817 | 0.7194 | 0.038* | |
H19B | 0.0303 | 1.1394 | 0.6712 | 0.038* | |
H19C | 0.1697 | 1.1459 | 0.6433 | 0.038* | |
C20 | 0.3203 (3) | 0.7019 (6) | 0.5841 (2) | 0.0256 (7) | |
C21 | 0.3559 (4) | 0.6297 (6) | 0.6915 (3) | 0.0344 (9) | |
H21A | 0.4510 | 0.6197 | 0.7141 | 0.052* | |
H21B | 0.3160 | 0.5188 | 0.6916 | 0.052* | |
H21C | 0.3236 | 0.7041 | 0.7380 | 0.052* | |
C22 | 0.3660 (4) | 0.8809 (6) | 0.5811 (4) | 0.0463 (12) | |
H22A | 0.4615 | 0.8846 | 0.6018 | 0.069* | |
H22B | 0.3292 | 0.9493 | 0.6278 | 0.069* | |
H22C | 0.3368 | 0.9247 | 0.5116 | 0.069* | |
C23 | 0.3749 (4) | 0.5895 (7) | 0.5121 (3) | 0.0415 (11) | |
H23A | 0.4705 | 0.5892 | 0.5329 | 0.062* | |
H23B | 0.3469 | 0.6321 | 0.4422 | 0.062* | |
H23C | 0.3422 | 0.4751 | 0.5150 | 0.062* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0237 (4) | 0.0206 (4) | 0.0128 (3) | −0.0007 (4) | 0.0020 (3) | −0.0017 (4) |
O1 | 0.0448 (16) | 0.0204 (13) | 0.0200 (12) | 0.0009 (11) | 0.0122 (11) | 0.0008 (10) |
O2 | 0.0313 (14) | 0.0179 (13) | 0.0265 (12) | −0.0014 (10) | 0.0053 (10) | −0.0064 (10) |
N1 | 0.0276 (16) | 0.0165 (14) | 0.0120 (12) | 0.0023 (12) | 0.0010 (11) | 0.0034 (11) |
C1 | 0.0311 (18) | 0.0125 (16) | 0.0119 (13) | −0.0027 (13) | 0.0042 (13) | 0.0000 (12) |
C2 | 0.0339 (19) | 0.0198 (17) | 0.0145 (14) | −0.0023 (14) | 0.0055 (13) | 0.0005 (13) |
C3 | 0.0316 (18) | 0.0297 (19) | 0.0234 (15) | −0.0088 (19) | 0.0072 (13) | −0.0046 (18) |
C4 | 0.041 (2) | 0.029 (2) | 0.0231 (18) | 0.0047 (17) | 0.0093 (15) | −0.0058 (15) |
C5 | 0.042 (2) | 0.026 (2) | 0.0195 (16) | 0.0040 (17) | 0.0152 (15) | −0.0025 (15) |
C6 | 0.058 (2) | 0.030 (2) | 0.039 (2) | 0.002 (2) | 0.0265 (18) | −0.005 (2) |
C7 | 0.094 (4) | 0.035 (3) | 0.043 (3) | 0.012 (3) | 0.033 (3) | 0.007 (2) |
C8 | 0.095 (4) | 0.037 (3) | 0.023 (2) | 0.027 (3) | 0.015 (2) | 0.0048 (19) |
C9 | 0.057 (3) | 0.072 (4) | 0.0263 (19) | 0.023 (3) | −0.0033 (18) | −0.015 (2) |
C10 | 0.041 (2) | 0.045 (3) | 0.0253 (19) | 0.007 (2) | 0.0037 (17) | −0.0105 (18) |
C11 | 0.0244 (17) | 0.0188 (17) | 0.0131 (14) | 0.0019 (13) | 0.0025 (12) | −0.0016 (12) |
C12 | 0.0300 (19) | 0.0162 (17) | 0.0155 (15) | 0.0033 (14) | 0.0067 (13) | 0.0017 (13) |
C13 | 0.0283 (19) | 0.0253 (19) | 0.0154 (15) | 0.0030 (15) | 0.0000 (13) | 0.0037 (14) |
C14 | 0.033 (2) | 0.028 (2) | 0.0179 (16) | −0.0045 (16) | −0.0009 (14) | −0.0029 (14) |
C15 | 0.032 (2) | 0.0177 (17) | 0.0251 (17) | −0.0022 (15) | 0.0038 (15) | −0.0023 (14) |
C16 | 0.0262 (18) | 0.0167 (17) | 0.0147 (14) | 0.0003 (13) | 0.0023 (13) | 0.0007 (12) |
C17 | 0.040 (2) | 0.0201 (18) | 0.0175 (16) | 0.0024 (16) | 0.0044 (15) | 0.0042 (14) |
C18 | 0.049 (3) | 0.039 (2) | 0.027 (2) | −0.010 (2) | −0.0111 (18) | −0.0025 (19) |
C19 | 0.040 (2) | 0.0143 (19) | 0.0203 (16) | −0.0027 (14) | 0.0040 (14) | −0.0018 (12) |
C20 | 0.0226 (16) | 0.0331 (18) | 0.0203 (14) | 0.0020 (18) | 0.0032 (12) | −0.0016 (19) |
C21 | 0.029 (2) | 0.051 (3) | 0.0208 (17) | 0.0104 (18) | 0.0002 (15) | −0.0013 (17) |
C22 | 0.027 (2) | 0.041 (3) | 0.068 (3) | −0.0101 (19) | 0.004 (2) | 0.003 (2) |
C23 | 0.030 (2) | 0.064 (3) | 0.031 (2) | 0.008 (2) | 0.0078 (17) | −0.011 (2) |
S1—O2 | 1.501 (3) | C12—C13 | 1.402 (5) |
S1—N1 | 1.652 (3) | C12—C17 | 1.507 (5) |
S1—C20 | 1.845 (3) | C13—C14 | 1.384 (5) |
O1—C4 | 1.437 (4) | C13—H13A | 0.9500 |
O1—C2 | 1.437 (4) | C14—C15 | 1.391 (5) |
N1—C1 | 1.487 (4) | C14—C18 | 1.518 (5) |
N1—H1 | 0.82 (4) | C15—C16 | 1.398 (4) |
C1—C11 | 1.529 (4) | C15—H15A | 0.9500 |
C1—C2 | 1.554 (5) | C16—C19 | 1.513 (4) |
C1—H1A | 1.0000 | C17—H17A | 0.9800 |
C2—C3 | 1.520 (5) | C17—H17B | 0.9800 |
C2—H2A | 1.0000 | C17—H17C | 0.9800 |
C3—H3A | 0.9800 | C18—H18A | 0.9800 |
C3—H3B | 0.9800 | C18—H18B | 0.9800 |
C3—H3C | 0.9800 | C18—H18C | 0.9800 |
C4—C5 | 1.515 (5) | C19—H19A | 0.9800 |
C4—H4A | 0.9900 | C19—H19B | 0.9800 |
C4—H4B | 0.9900 | C19—H19C | 0.9800 |
C5—C10 | 1.367 (6) | C20—C22 | 1.511 (6) |
C5—C6 | 1.391 (6) | C20—C21 | 1.522 (5) |
C6—C7 | 1.387 (7) | C20—C23 | 1.529 (5) |
C6—H6A | 0.9500 | C21—H21A | 0.9800 |
C7—C8 | 1.371 (7) | C21—H21B | 0.9800 |
C7—H7A | 0.9500 | C21—H21C | 0.9800 |
C8—C9 | 1.400 (8) | C22—H22A | 0.9800 |
C8—H8A | 0.9500 | C22—H22B | 0.9800 |
C9—C10 | 1.406 (7) | C22—H22C | 0.9800 |
C9—H9A | 0.9500 | C23—H23A | 0.9800 |
C10—H10A | 0.9500 | C23—H23B | 0.9800 |
C11—C16 | 1.403 (5) | C23—H23C | 0.9800 |
C11—C12 | 1.417 (4) | ||
O2—S1—N1 | 110.67 (15) | C14—C13—C12 | 122.0 (3) |
O2—S1—C20 | 104.37 (18) | C14—C13—H13A | 119.0 |
N1—S1—C20 | 103.45 (16) | C12—C13—H13A | 119.0 |
C4—O1—C2 | 118.0 (3) | C13—C14—C15 | 117.9 (3) |
C1—N1—S1 | 122.8 (2) | C13—C14—C18 | 121.0 (3) |
C1—N1—H1 | 113 (3) | C15—C14—C18 | 121.1 (4) |
S1—N1—H1 | 110 (3) | C14—C15—C16 | 122.3 (3) |
N1—C1—C11 | 112.3 (3) | C14—C15—H15A | 118.8 |
N1—C1—C2 | 109.6 (3) | C16—C15—H15A | 118.8 |
C11—C1—C2 | 113.7 (3) | C15—C16—C11 | 119.4 (3) |
N1—C1—H1A | 107.0 | C15—C16—C19 | 116.9 (3) |
C11—C1—H1A | 107.0 | C11—C16—C19 | 123.7 (3) |
C2—C1—H1A | 107.0 | C12—C17—H17A | 109.5 |
O1—C2—C3 | 105.7 (3) | C12—C17—H17B | 109.5 |
O1—C2—C1 | 110.7 (3) | H17A—C17—H17B | 109.5 |
C3—C2—C1 | 111.7 (3) | C12—C17—H17C | 109.5 |
O1—C2—H2A | 109.5 | H17A—C17—H17C | 109.5 |
C3—C2—H2A | 109.5 | H17B—C17—H17C | 109.5 |
C1—C2—H2A | 109.5 | C14—C18—H18A | 109.5 |
C2—C3—H3A | 109.5 | C14—C18—H18B | 109.5 |
C2—C3—H3B | 109.5 | H18A—C18—H18B | 109.5 |
H3A—C3—H3B | 109.5 | C14—C18—H18C | 109.5 |
C2—C3—H3C | 109.5 | H18A—C18—H18C | 109.5 |
H3A—C3—H3C | 109.5 | H18B—C18—H18C | 109.5 |
H3B—C3—H3C | 109.5 | C16—C19—H19A | 109.5 |
O1—C4—C5 | 113.6 (3) | C16—C19—H19B | 109.5 |
O1—C4—H4A | 108.8 | H19A—C19—H19B | 109.5 |
C5—C4—H4A | 108.8 | C16—C19—H19C | 109.5 |
O1—C4—H4B | 108.8 | H19A—C19—H19C | 109.5 |
C5—C4—H4B | 108.8 | H19B—C19—H19C | 109.5 |
H4A—C4—H4B | 107.7 | C22—C20—C21 | 112.0 (3) |
C10—C5—C6 | 120.7 (4) | C22—C20—C23 | 111.6 (4) |
C10—C5—C4 | 121.6 (4) | C21—C20—C23 | 109.6 (4) |
C6—C5—C4 | 117.7 (4) | C22—C20—S1 | 107.2 (3) |
C7—C6—C5 | 120.4 (4) | C21—C20—S1 | 112.3 (2) |
C7—C6—H6A | 119.8 | C23—C20—S1 | 103.9 (2) |
C5—C6—H6A | 119.8 | C20—C21—H21A | 109.5 |
C8—C7—C6 | 119.3 (5) | C20—C21—H21B | 109.5 |
C8—C7—H7A | 120.4 | H21A—C21—H21B | 109.5 |
C6—C7—H7A | 120.4 | C20—C21—H21C | 109.5 |
C7—C8—C9 | 120.8 (4) | H21A—C21—H21C | 109.5 |
C7—C8—H8A | 119.6 | H21B—C21—H21C | 109.5 |
C9—C8—H8A | 119.6 | C20—C22—H22A | 109.5 |
C8—C9—C10 | 119.3 (4) | C20—C22—H22B | 109.5 |
C8—C9—H9A | 120.3 | H22A—C22—H22B | 109.5 |
C10—C9—H9A | 120.3 | C20—C22—H22C | 109.5 |
C5—C10—C9 | 119.4 (5) | H22A—C22—H22C | 109.5 |
C5—C10—H10A | 120.3 | H22B—C22—H22C | 109.5 |
C9—C10—H10A | 120.3 | C20—C23—H23A | 109.5 |
C16—C11—C12 | 119.1 (3) | C20—C23—H23B | 109.5 |
C16—C11—C1 | 122.5 (3) | H23A—C23—H23B | 109.5 |
C12—C11—C1 | 118.4 (3) | C20—C23—H23C | 109.5 |
C13—C12—C11 | 119.3 (3) | H23A—C23—H23C | 109.5 |
C13—C12—C17 | 117.9 (3) | H23B—C23—H23C | 109.5 |
C11—C12—C17 | 122.8 (3) | ||
O2—S1—N1—C1 | 27.5 (3) | C2—C1—C11—C12 | 98.0 (4) |
C20—S1—N1—C1 | −83.8 (3) | C16—C11—C12—C13 | −1.7 (5) |
S1—N1—C1—C11 | 114.3 (3) | C1—C11—C12—C13 | 178.9 (3) |
S1—N1—C1—C2 | −118.3 (3) | C16—C11—C12—C17 | 177.2 (3) |
C4—O1—C2—C3 | −146.4 (3) | C1—C11—C12—C17 | −2.2 (5) |
C4—O1—C2—C1 | 92.5 (3) | C11—C12—C13—C14 | −0.1 (5) |
N1—C1—C2—O1 | 177.6 (3) | C17—C12—C13—C14 | −179.0 (4) |
C11—C1—C2—O1 | −55.9 (4) | C12—C13—C14—C15 | 1.3 (6) |
N1—C1—C2—C3 | 60.1 (3) | C12—C13—C14—C18 | 179.8 (4) |
C11—C1—C2—C3 | −173.4 (3) | C13—C14—C15—C16 | −0.7 (6) |
C2—O1—C4—C5 | 53.4 (4) | C18—C14—C15—C16 | −179.2 (4) |
O1—C4—C5—C10 | 63.7 (5) | C14—C15—C16—C11 | −1.2 (5) |
O1—C4—C5—C6 | −117.6 (4) | C14—C15—C16—C19 | 178.6 (3) |
C10—C5—C6—C7 | −3.7 (6) | C12—C11—C16—C15 | 2.3 (5) |
C4—C5—C6—C7 | 177.6 (3) | C1—C11—C16—C15 | −178.3 (3) |
C5—C6—C7—C8 | 0.9 (6) | C12—C11—C16—C19 | −177.4 (3) |
C6—C7—C8—C9 | 2.2 (7) | C1—C11—C16—C19 | 2.0 (5) |
C7—C8—C9—C10 | −2.6 (6) | O2—S1—C20—C22 | −172.3 (3) |
C6—C5—C10—C9 | 3.3 (5) | N1—S1—C20—C22 | −56.5 (3) |
C4—C5—C10—C9 | −178.0 (3) | O2—S1—C20—C21 | −48.9 (3) |
C8—C9—C10—C5 | −0.2 (6) | N1—S1—C20—C21 | 66.9 (3) |
N1—C1—C11—C16 | 43.8 (4) | O2—S1—C20—C23 | 69.4 (3) |
C2—C1—C11—C16 | −81.3 (4) | N1—S1—C20—C23 | −174.7 (3) |
N1—C1—C11—C12 | −136.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.83 (4) | 2.08 (4) | 2.890 (4) | 169 (4) |
C7—H7A···O1ii | 0.95 | 2.59 | 3.501 (6) | 160 |
Symmetry codes: (i) −x, y+1/2, −z+1; (ii) x, y+1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.84 (2) | 2.23 (2) | 3.0039 (15) | 152.8 (7) |
C18—H18A···O2i | 0.98 | 2.52 | 3.4077 (17) | 150 |
C23—H23B···O2i | 0.98 | 2.59 | 3.5534 (17) | 167 |
Symmetry code: (i) x+1/2, −y+1/2, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.83 (4) | 2.08 (4) | 2.890 (4) | 169 (4) |
C7—H7A···O1ii | 0.95 | 2.59 | 3.501 (6) | 160 |
Symmetry codes: (i) −x, y+1/2, −z+1; (ii) x, y+1, z. |
Experimental details
(1) | (2) | |
Crystal data | ||
Chemical formula | C22H31NO2S | C23H33NO2S |
Mr | 373.54 | 387.56 |
Crystal system, space group | Orthorhombic, P212121 | Monoclinic, P21 |
Temperature (K) | 100 | 100 |
a, b, c (Å) | 9.1567 (13), 10.2951 (15), 22.494 (3) | 10.535 (3), 7.984 (2), 13.481 (4) |
α, β, γ (°) | 90, 90, 90 | 90, 103.519 (5), 90 |
V (Å3) | 2120.5 (5) | 1102.5 (5) |
Z | 4 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.17 | 0.16 |
Crystal size (mm) | 0.40 × 0.25 × 0.20 | 0.50 × 0.14 × 0.10 |
Data collection | ||
Diffractometer | Bruker APEXII CCD diffractometer | Bruker SMART APEXII CCD platform diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2014) | Multi-scan (SADABS; Bruker, 2014) |
Tmin, Tmax | 0.642, 0.748 | 0.564, 0.746 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 74315, 11731, 10413 | 18025, 6191, 4675 |
Rint | 0.041 | 0.074 |
(sin θ/λ)max (Å−1) | 0.879 | 0.695 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.096, 1.09 | 0.055, 0.126, 1.01 |
No. of reflections | 11731 | 6191 |
No. of parameters | 245 | 255 |
No. of restraints | 0 | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.40, −0.30 | 0.72, −0.32 |
Absolute structure | Flack x determined using 4260 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) | Flack x determined using 1713 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
Absolute structure parameter | 0.005 (12) | 0.03 (6) |
Computer programs: APEX2 (Bruker, 2014), SAINT (Bruker, 2014), SHELXS2013 (Sheldrick, 2008), SHELXL2014 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Acknowledgements
The authors thank Keywan Johnson and Kierra Huihui for their expert guidance with the synthetic work and the University of Rochester Chemistry Department (CHM 234) for financial support.
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