research communications
N-[(2S,5R)-4-oxo-2,3-diphenyl-1,3-thiazinan-5-yl]acetamide 0.375-hydrate
ofaDepartment of Chemistry, Pennsylvania State University, University Park, PA 16802, USA, and bPennsylvania State University, Schuylkill Campus, 200 University Drive, Schuylkill Haven, PA 17972, USA
*Correspondence e-mail: ljs43@psu.edu
The 18H18N2O2S.0.375H2O, has two independent organic molecules (A and B) and 3/4 of a water molecule distributed over three sites. In molecule A, the 1,3-thiazine ring is in a boat conformation, with the C atoms at the 2- and 5-positions out of the plane. The angle between the two phenyl rings is 51.70 (12)°. In molecule B, the thiazine ring is in a half-chair conformation, with the S atom forming the back of the half-chair. The angle between the two phenyl rings is 84.44 (14)°. The A molecule features an intramolecular N—H⋯O hydrogen bond, which closes an S(5) ring motif. In the crystal, the corresponding N—H grouping of the B molecule participates in an intermolecular hydrogen bond to the A molecule. The A molecule participates in a C—H⋯O interaction back to the B molecule, whilst the B molecule features an intramolecular C—H⋯O link, which generates an S(10) loop.
of the title compound, CKeywords: crystal structure; thiazine ring; boat; half-chair; 1,3-thiazin-4-one; hydrogen bonding.
CCDC reference: 1037009
1. Chemical context
In a recent paper, we reported the 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphorinane-2,4,6-trioxide (T3P)-promoted N-[phenylmethylidene]aniline with 3-sulfanylpropanoic acid to produce 2,3-diphenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one (Yennawar & Silverberg, 2014). As noted before (Yennawar et al., 2014), prior to this, the N-aryl compounds had not easily been prepared by condensation of with thioacids. With respect to the thioacid, the use of a homochiral cysteine derivative is desirable because, along with putting a on the ring, it creates a second chiral center at the 5-position of the thiazinone, potentially allowing the separation of two into cis and trans homochiral heterocycles. A condensation of N-acetylcysteine with two very active (CX3)2C=NH has been reported (Raasch, 1974), giving a thiazinone with one chiral center. Although a search of 2,3,5,6-tetrahydro-4H-1,3-thiazin-4-ones with a nitrogen atom at the 5-position and carbon atoms at positions 2 and 3 found 156 compounds, there were only two compounds with an aryl group at the 3-position and both involved a more complex bridged structure synthesized by a cycloaddition route (Potts, et al., 1974). Herein we report the T3P-promoted of N-[phenylmethylidene]aniline with N-acetyl-L-cysteine. One major product arose along with at least three minor products, as determined by NMR spectroscopy. The major product was isolated by followed by recrystallization. The structure is reported as the title compound here. The minor products have not yet been satisfactorily isolated. As reported here, the major product is the cis diastereomer.
of2. Structural commentary
The two independent organic molecules in the ). In molecule A, the ring takes a boat configuration with the groups at the 2- and 5-positions pseudo-equatorial and the hydrogens at these positions within 1.993 Å of each other. The stability gained by having both groups pseudo-equatorial must offset the higher energy expected in a boat conformation. The dihedral angle between the C1- and C8-benzene rings is 51.7 (2)°. An intramolecular N2—H2N⋯O1 hydrogen bond is observed, which closes an S(5) ring.
exhibit different geometries for the thiazine ring (Fig. 1In molecule B, the thiazine ring adopts a half-chair conformation. The groups at the 2- and 5-positions cannot readily be defined as pseudo-axial or pseudo-equatorial, but the phenyl ring at the 2-position is closer to axial, while the amide group at the 5-position is closer to equatorial. The dihedral angle between the phenyl rings (C20–C25 and C26–C31) is 84.4 (2)°. This conformation is similar to that observed for 2,3-diphenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one (Yennawar & Silverberg, 2014). Molecule B features an intramolecular C21—H21⋯O4 link, which generates an S(10) loop.
The residual electron density suggested several solvent molecule sites but only with partial occupancies. The best model fixed the occupancy for each of the three water-molecule sites at 0.25.
3. Supramolecular features
In the crystal, the N—H grouping of molecule B (corresponding to the one involved in the intramolecular N2—H2N⋯O1 hydrogen bond in molecule A) participates in an intermolecular N4—H4N⋯O2 hydrogen bond to molecule A (Table 1). Molecule A participates in a C7—H7⋯O3 interaction back to molecule B. The crystal packing is shown in Fig. 2.
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4. Synthesis and crystallization
A two-necked 25 ml round-bottom flask was oven-dried, cooled under N2, and charged with a stir bar and N-benzylideneaniline (1.087 g, 6 mmol). Tetrahydrofuran (2.3 ml) was added, the solid dissolved, and the solution was stirred. Pyridine (1.95 ml, 24 mmol) was added and then N-acetyl-L-cysteine (6 mmol, 0.9824 g) was added. Finally, 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphorinane-2,4,6-trioxide (T3P) in 2-methyltetrahydrofuran (50 weight%; 7.1 ml, 12 mmol) was added. The reaction was stirred at room temperature. TLC (EtOAc) after one day showed the reaction was complete, with two product spots, but the reaction was allowed to stir another 13 days. The mixture was poured into a separatory funnel with dichloromethane and distilled water. The layers were separated and the aqueous was then extracted twice with dichloromethane. The organics were combined and washed with saturated sodium bicarbonate and then saturated sodium chloride. The organic was dried over sodium sulfate, and concentrated under vacuum to a solid. The crude was chromatographed on 30 g flash silica gel, eluting with 50% ethyl acetate/hexanes and 100% ethyl acetate. Fractions containing the larger, more polar spot on TLC were combined, concentrated under vacuum, recrystallized from ethyl acetate/hexanes, and rinsed with ethanol to give light-yellow crystals of N-[(2S, 5R)-4-oxo-2,3-diphenyl-1,3-thiazinan-5-yl]acetamide (0.2702 g, 13.8%). m.p.: 460–463 K. Rf = 0.24 (EtOAc). Colourless cuboids were grown by slow evaporation from 2-propanol. The fractions containing the other TLC spot [Rf = 0.33 (EtOAc)] showed four different compounds by NMR, including the title compound.
5. Refinement
Crystal data, data collection and structure . The hydrogen atoms bound to the nitrogen atom was located in the difference Fourier map and refined isotropically. The C-bound H atoms were geometrically placed with C—H = 0.93–0.97 Å, and refined as riding with Uiso(H) = 1.2Ueq(C). The three solvent molecule sites were given occupancy of 0.25 each, as that proved to be the best way to account for the residual electron density.
details are summarized in Table 2Supporting information
CCDC reference: 1037009
https://doi.org/10.1107/S2056989014026425/hb7315sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989014026425/hb7315Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989014026425/hb7315Isup3.mol
Supporting information file. DOI: https://doi.org/10.1107/S2056989014026425/hb7315Isup4.cml
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XSHELL (Bruker, 2001); software used to prepare material for publication: ORTEP-3 for Windows (Farrugia, 2012).2C18H18N2O2S·0.75OH2O | Dx = 1.233 Mg m−3 |
Mr = 664.81 | Melting point: 451(2) K |
Tetragonal, P41212 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 4abw 2nw | Cell parameters from 6252 reflections |
a = 13.3438 (12) Å | θ = 2.2–26.4° |
c = 40.237 (7) Å | µ = 0.19 mm−1 |
V = 7164.6 (16) Å3 | T = 298 K |
Z = 8 | Cube, colorless |
F(000) = 2800 | 0.28 × 0.25 × 0.20 mm |
Bruker SMART APEX CCD diffractometer | 8891 independent reflections |
Radiation source: fine-focus sealed tube | 6254 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.049 |
Detector resolution: 8.34 pixels mm-1 | θmax = 28.3°, θmin = 1.6° |
φ and ω scans | h = −16→17 |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | k = −17→16 |
Tmin = 0.948, Tmax = 0.962 | l = −53→53 |
56028 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.066 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.216 | w = 1/[σ2(Fo2) + (0.140P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.008 |
8891 reflections | Δρmax = 0.75 e Å−3 |
448 parameters | Δρmin = −0.48 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 3769 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.10 (10) |
Experimental. Absorption correction: SADABS was used for absorption correction. R(int) was 0.0331 before and 0.0128 after correction. The Ratio of minimum to maximum transmission is 0.8482. The λ/2 correction factor is 0.0015. The data collection nominally covered a full sphere of reciprocal space by a combination of 4 sets of ω scans each set at different φ and/or 2θ angles and each scan (10 s exposure) covering -0.300° degrees in ω. The crystal to detector distance was 5.82 cm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O5A | 0.0057 (15) | 0.053 (2) | 0.2410 (7) | 0.178 (10) | 0.25 |
C1 | 0.2504 (3) | −0.0827 (2) | 0.18198 (8) | 0.0489 (7) | |
C2 | 0.1531 (3) | −0.1098 (3) | 0.18700 (10) | 0.0651 (9) | |
H2 | 0.1094 | −0.0680 | 0.1985 | 0.078* | |
C3 | 0.1199 (4) | −0.2031 (4) | 0.17437 (13) | 0.0878 (15) | |
H3 | 0.0530 | −0.2212 | 0.1768 | 0.105* | |
C4 | 0.1842 (5) | −0.2668 (3) | 0.15865 (14) | 0.0923 (16) | |
H4 | 0.1618 | −0.3286 | 0.1510 | 0.111* | |
C5 | 0.2808 (4) | −0.2392 (3) | 0.15436 (11) | 0.0800 (13) | |
H5 | 0.3247 | −0.2825 | 0.1436 | 0.096* | |
C6 | 0.3156 (3) | −0.1476 (3) | 0.16574 (9) | 0.0625 (9) | |
H6 | 0.3822 | −0.1297 | 0.1625 | 0.075* | |
C7 | 0.3648 (3) | 0.0213 (3) | 0.21946 (8) | 0.0509 (7) | |
H7 | 0.4174 | 0.0648 | 0.2105 | 0.061* | |
C8 | 0.4137 (3) | −0.0748 (3) | 0.22965 (8) | 0.0562 (8) | |
C9 | 0.3653 (3) | −0.1439 (3) | 0.24980 (10) | 0.0706 (10) | |
H9 | 0.3010 | −0.1323 | 0.2579 | 0.085* | |
C10 | 0.4193 (5) | −0.2344 (3) | 0.25755 (12) | 0.0907 (16) | |
H10 | 0.3891 | −0.2829 | 0.2708 | 0.109* | |
C11 | 0.5109 (5) | −0.2497 (4) | 0.24620 (14) | 0.0932 (16) | |
H11 | 0.5439 | −0.3088 | 0.2517 | 0.112* | |
C12 | 0.5571 (4) | −0.1833 (5) | 0.22722 (15) | 0.0994 (17) | |
H12 | 0.6211 | −0.1966 | 0.2192 | 0.119* | |
C13 | 0.5102 (3) | −0.0938 (4) | 0.21928 (11) | 0.0739 (10) | |
H13 | 0.5442 | −0.0461 | 0.2068 | 0.089* | |
C14 | 0.2462 (2) | 0.0994 (2) | 0.18183 (8) | 0.0499 (7) | |
C15 | 0.2878 (3) | 0.1931 (2) | 0.19744 (9) | 0.0545 (7) | |
H15 | 0.3607 | 0.1932 | 0.1945 | 0.065* | |
C16 | 0.2647 (4) | 0.1940 (3) | 0.23457 (10) | 0.0724 (10) | |
H16A | 0.1927 | 0.1975 | 0.2377 | 0.087* | |
H16B | 0.2940 | 0.2535 | 0.2444 | 0.087* | |
C17 | 0.2967 (3) | 0.3685 (2) | 0.17969 (9) | 0.0577 (8) | |
C18 | 0.2486 (4) | 0.4517 (3) | 0.16103 (11) | 0.0772 (12) | |
H18A | 0.2521 | 0.5121 | 0.1739 | 0.116* | |
H18B | 0.1798 | 0.4353 | 0.1568 | 0.116* | |
H18C | 0.2830 | 0.4614 | 0.1403 | 0.116* | |
C19 | 0.6796 (2) | 0.1320 (2) | 0.09363 (8) | 0.0481 (7) | |
H19 | 0.6662 | 0.1120 | 0.0706 | 0.058* | |
C20 | 0.7810 (2) | 0.0882 (2) | 0.10234 (9) | 0.0516 (7) | |
C21 | 0.8070 (3) | 0.0618 (3) | 0.13434 (10) | 0.0612 (8) | |
H21 | 0.7602 | 0.0671 | 0.1514 | 0.073* | |
C22 | 0.9023 (3) | 0.0278 (3) | 0.14103 (15) | 0.0826 (13) | |
H22 | 0.9196 | 0.0100 | 0.1626 | 0.099* | |
C23 | 0.9725 (3) | 0.0197 (4) | 0.11586 (16) | 0.0866 (15) | |
H23 | 1.0374 | −0.0012 | 0.1207 | 0.104* | |
C24 | 0.9467 (3) | 0.0419 (4) | 0.08473 (16) | 0.0900 (15) | |
H24 | 0.9933 | 0.0340 | 0.0677 | 0.108* | |
C25 | 0.8515 (3) | 0.0765 (3) | 0.07738 (12) | 0.0693 (10) | |
H25 | 0.8347 | 0.0921 | 0.0555 | 0.083* | |
C26 | 0.5686 (2) | −0.0093 (2) | 0.10451 (8) | 0.0492 (7) | |
C27 | 0.5836 (3) | −0.0874 (3) | 0.12672 (11) | 0.0614 (8) | |
H27 | 0.6106 | −0.0748 | 0.1476 | 0.074* | |
C28 | 0.5582 (3) | −0.1838 (3) | 0.11770 (13) | 0.0726 (11) | |
H28 | 0.5669 | −0.2361 | 0.1327 | 0.087* | |
C29 | 0.5199 (4) | −0.2029 (3) | 0.08654 (14) | 0.0817 (13) | |
H29 | 0.5027 | −0.2681 | 0.0806 | 0.098* | |
C30 | 0.5071 (4) | −0.1261 (4) | 0.06417 (13) | 0.0899 (15) | |
H30 | 0.4823 | −0.1396 | 0.0430 | 0.108* | |
C31 | 0.5311 (3) | −0.0281 (3) | 0.07304 (10) | 0.0678 (10) | |
H31 | 0.5220 | 0.0240 | 0.0580 | 0.081* | |
C32 | 0.5461 (2) | 0.1382 (2) | 0.13924 (8) | 0.0490 (7) | |
C33 | 0.5743 (3) | 0.2454 (3) | 0.14941 (9) | 0.0542 (8) | |
H33 | 0.5249 | 0.2891 | 0.1387 | 0.065* | |
C34 | 0.6759 (3) | 0.2826 (2) | 0.13793 (10) | 0.0570 (8) | |
H34A | 0.7286 | 0.2442 | 0.1486 | 0.068* | |
H34B | 0.6842 | 0.3525 | 0.1439 | 0.068* | |
C35 | 0.6035 (3) | 0.1985 (4) | 0.20735 (10) | 0.0707 (10) | |
C36 | 0.5771 (5) | 0.2170 (5) | 0.24334 (11) | 0.1019 (17) | |
H36A | 0.5455 | 0.2813 | 0.2455 | 0.153* | |
H36B | 0.6371 | 0.2157 | 0.2565 | 0.153* | |
H36C | 0.5321 | 0.1657 | 0.2509 | 0.153* | |
N1 | 0.28612 (19) | 0.01260 (19) | 0.19383 (7) | 0.0474 (6) | |
N2 | 0.2471 (3) | 0.2807 (2) | 0.18125 (9) | 0.0601 (7) | |
H2N | 0.193 (5) | 0.265 (4) | 0.1701 (12) | 0.100 (17)* | |
N3 | 0.59653 (19) | 0.09217 (19) | 0.11341 (7) | 0.0481 (6) | |
N4 | 0.5591 (3) | 0.2575 (3) | 0.18477 (9) | 0.0633 (8) | |
H4N | 0.511 (3) | 0.305 (3) | 0.1853 (9) | 0.053 (10)* | |
O1 | 0.1807 (2) | 0.10192 (19) | 0.16054 (7) | 0.0673 (7) | |
O2 | 0.3791 (2) | 0.3763 (2) | 0.19349 (8) | 0.0734 (7) | |
O3 | 0.47621 (19) | 0.09644 (19) | 0.15238 (7) | 0.0629 (6) | |
O4 | 0.6614 (3) | 0.1312 (3) | 0.19895 (8) | 0.0841 (9) | |
S1 | 0.31262 (10) | 0.08417 (8) | 0.25589 (2) | 0.0726 (3) | |
S2 | 0.68356 (7) | 0.26844 (7) | 0.09362 (3) | 0.0624 (2) | |
O5C | 0.9973 (9) | 0.2040 (12) | 0.2631 (3) | 0.092 (4) | 0.25 |
O5B | 0.8745 (12) | 0.1255 (12) | 0.2500 | 0.270 (15) | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
O5A | 0.092 (12) | 0.22 (3) | 0.22 (3) | 0.038 (16) | 0.064 (14) | 0.00 (2) |
C1 | 0.0553 (18) | 0.0383 (15) | 0.0533 (15) | −0.0032 (13) | −0.0101 (14) | 0.0055 (12) |
C2 | 0.0536 (19) | 0.064 (2) | 0.078 (2) | −0.0075 (16) | −0.0073 (17) | 0.0157 (18) |
C3 | 0.079 (3) | 0.070 (3) | 0.114 (3) | −0.028 (2) | −0.036 (3) | 0.023 (3) |
C4 | 0.115 (4) | 0.046 (2) | 0.116 (4) | −0.008 (3) | −0.047 (3) | 0.002 (2) |
C5 | 0.103 (4) | 0.054 (2) | 0.083 (3) | 0.014 (2) | −0.024 (2) | −0.013 (2) |
C6 | 0.066 (2) | 0.061 (2) | 0.0607 (19) | 0.0083 (17) | −0.0060 (17) | −0.0083 (16) |
C7 | 0.0494 (17) | 0.0505 (17) | 0.0527 (16) | −0.0001 (13) | −0.0053 (13) | 0.0027 (13) |
C8 | 0.059 (2) | 0.0545 (19) | 0.0552 (16) | −0.0001 (15) | −0.0102 (15) | −0.0019 (14) |
C9 | 0.074 (3) | 0.069 (2) | 0.069 (2) | −0.0090 (19) | −0.006 (2) | 0.0174 (19) |
C10 | 0.132 (5) | 0.058 (2) | 0.083 (3) | −0.016 (3) | −0.038 (3) | 0.017 (2) |
C11 | 0.099 (4) | 0.083 (3) | 0.097 (3) | 0.023 (3) | −0.037 (3) | 0.007 (3) |
C12 | 0.081 (3) | 0.106 (4) | 0.111 (4) | 0.033 (3) | −0.023 (3) | 0.006 (3) |
C13 | 0.059 (2) | 0.089 (3) | 0.074 (2) | 0.016 (2) | −0.0084 (19) | 0.007 (2) |
C14 | 0.0495 (17) | 0.0416 (16) | 0.0585 (17) | 0.0026 (13) | −0.0020 (14) | 0.0028 (13) |
C15 | 0.0507 (17) | 0.0406 (15) | 0.0722 (19) | 0.0010 (13) | 0.0011 (15) | −0.0072 (15) |
C16 | 0.088 (3) | 0.052 (2) | 0.077 (2) | 0.0129 (19) | 0.009 (2) | −0.0090 (18) |
C17 | 0.062 (2) | 0.0402 (16) | 0.071 (2) | 0.0004 (14) | 0.0133 (17) | −0.0029 (14) |
C18 | 0.104 (3) | 0.0449 (19) | 0.083 (3) | 0.005 (2) | 0.009 (2) | 0.0092 (18) |
C19 | 0.0402 (15) | 0.0411 (15) | 0.0630 (17) | −0.0036 (12) | 0.0048 (13) | 0.0051 (13) |
C20 | 0.0445 (16) | 0.0382 (15) | 0.0722 (19) | −0.0046 (12) | 0.0036 (14) | −0.0062 (14) |
C21 | 0.055 (2) | 0.0498 (18) | 0.078 (2) | 0.0039 (16) | −0.0041 (17) | −0.0032 (16) |
C22 | 0.066 (3) | 0.056 (2) | 0.126 (4) | 0.0054 (19) | −0.030 (3) | −0.011 (2) |
C23 | 0.043 (2) | 0.069 (3) | 0.148 (5) | 0.0080 (17) | −0.008 (3) | −0.009 (3) |
C24 | 0.052 (2) | 0.083 (3) | 0.135 (5) | 0.004 (2) | 0.031 (3) | −0.012 (3) |
C25 | 0.056 (2) | 0.060 (2) | 0.091 (3) | −0.0015 (17) | 0.0156 (19) | 0.001 (2) |
C26 | 0.0369 (15) | 0.0466 (16) | 0.0641 (17) | −0.0015 (12) | 0.0024 (13) | 0.0020 (14) |
C27 | 0.0502 (19) | 0.0510 (19) | 0.083 (2) | 0.0040 (15) | 0.0034 (17) | 0.0045 (17) |
C28 | 0.058 (2) | 0.0470 (19) | 0.113 (3) | 0.0028 (16) | 0.003 (2) | 0.007 (2) |
C29 | 0.070 (3) | 0.049 (2) | 0.126 (4) | −0.0124 (18) | 0.006 (3) | −0.014 (2) |
C30 | 0.089 (3) | 0.093 (3) | 0.088 (3) | −0.035 (3) | 0.002 (3) | −0.015 (3) |
C31 | 0.063 (2) | 0.070 (2) | 0.070 (2) | −0.0136 (18) | −0.0083 (18) | −0.0008 (18) |
C32 | 0.0362 (15) | 0.0483 (17) | 0.0624 (17) | 0.0014 (12) | 0.0060 (13) | 0.0011 (14) |
C33 | 0.0456 (17) | 0.0442 (16) | 0.073 (2) | 0.0081 (13) | 0.0025 (15) | −0.0023 (14) |
C34 | 0.0499 (18) | 0.0363 (15) | 0.085 (2) | −0.0017 (13) | 0.0023 (16) | 0.0065 (15) |
C35 | 0.062 (2) | 0.079 (3) | 0.071 (2) | −0.014 (2) | −0.0045 (18) | −0.005 (2) |
C36 | 0.108 (4) | 0.129 (5) | 0.069 (2) | −0.034 (3) | 0.008 (3) | −0.017 (3) |
N1 | 0.0457 (14) | 0.0392 (13) | 0.0574 (14) | 0.0019 (10) | −0.0038 (11) | −0.0014 (11) |
N2 | 0.0589 (18) | 0.0402 (15) | 0.081 (2) | 0.0012 (12) | −0.0044 (16) | −0.0011 (13) |
N3 | 0.0396 (13) | 0.0426 (13) | 0.0622 (14) | 0.0000 (10) | 0.0053 (11) | 0.0027 (11) |
N4 | 0.0577 (18) | 0.0550 (18) | 0.0772 (19) | 0.0000 (15) | 0.0121 (15) | −0.0127 (15) |
O1 | 0.0695 (16) | 0.0490 (13) | 0.0834 (16) | −0.0016 (12) | −0.0239 (14) | 0.0030 (12) |
O2 | 0.0626 (17) | 0.0519 (15) | 0.106 (2) | −0.0026 (12) | 0.0136 (15) | −0.0058 (14) |
O3 | 0.0511 (13) | 0.0584 (14) | 0.0791 (16) | −0.0047 (11) | 0.0173 (12) | −0.0021 (12) |
O4 | 0.0760 (19) | 0.094 (2) | 0.0821 (18) | 0.0198 (17) | −0.0026 (16) | 0.0077 (17) |
S1 | 0.0985 (8) | 0.0656 (6) | 0.0537 (4) | 0.0074 (5) | 0.0004 (5) | −0.0062 (4) |
S2 | 0.0592 (5) | 0.0476 (5) | 0.0805 (6) | −0.0027 (4) | 0.0059 (4) | 0.0147 (4) |
O5C | 0.059 (7) | 0.114 (11) | 0.103 (9) | 0.018 (7) | 0.012 (6) | −0.027 (8) |
O5B | 0.172 (12) | 0.172 (12) | 0.47 (4) | 0.015 (16) | −0.096 (18) | −0.096 (18) |
O5A—O5Ai | 1.33 (4) | C19—C20 | 1.515 (4) |
C1—C2 | 1.363 (5) | C19—S2 | 1.822 (3) |
C1—C6 | 1.391 (5) | C19—H19 | 0.9800 |
C1—N1 | 1.439 (4) | C20—C21 | 1.379 (5) |
C2—C3 | 1.415 (6) | C20—C25 | 1.384 (5) |
C2—H2 | 0.9300 | C21—C22 | 1.377 (6) |
C3—C4 | 1.363 (8) | C21—H21 | 0.9300 |
C3—H3 | 0.9300 | C22—C23 | 1.384 (8) |
C4—C5 | 1.352 (8) | C22—H22 | 0.9300 |
C4—H4 | 0.9300 | C23—C24 | 1.333 (7) |
C5—C6 | 1.385 (6) | C23—H23 | 0.9300 |
C5—H5 | 0.9300 | C24—C25 | 1.384 (7) |
C6—H6 | 0.9300 | C24—H24 | 0.9300 |
C7—N1 | 1.477 (4) | C25—H25 | 0.9300 |
C7—C8 | 1.496 (5) | C26—C31 | 1.385 (5) |
C7—S1 | 1.827 (4) | C26—C27 | 1.388 (5) |
C7—H7 | 0.9800 | C26—N3 | 1.449 (4) |
C8—C13 | 1.377 (6) | C27—C28 | 1.379 (6) |
C8—C9 | 1.388 (5) | C27—H27 | 0.9300 |
C9—C10 | 1.440 (7) | C28—C29 | 1.378 (7) |
C9—H9 | 0.9300 | C28—H28 | 0.9300 |
C10—C11 | 1.321 (8) | C29—C30 | 1.376 (7) |
C10—H10 | 0.9300 | C29—H29 | 0.9300 |
C11—C12 | 1.322 (8) | C30—C31 | 1.392 (6) |
C11—H11 | 0.9300 | C30—H30 | 0.9300 |
C12—C13 | 1.386 (7) | C31—H31 | 0.9300 |
C12—H12 | 0.9300 | C32—O3 | 1.208 (4) |
C13—H13 | 0.9300 | C32—N3 | 1.382 (4) |
C14—O1 | 1.225 (4) | C32—C33 | 1.535 (5) |
C14—N1 | 1.363 (4) | C33—N4 | 1.446 (5) |
C14—C15 | 1.505 (5) | C33—C34 | 1.516 (5) |
C15—N2 | 1.444 (5) | C33—H33 | 0.9800 |
C15—C16 | 1.525 (5) | C34—S2 | 1.796 (4) |
C15—H15 | 0.9800 | C34—H34A | 0.9700 |
C16—S1 | 1.814 (4) | C34—H34B | 0.9700 |
C16—H16A | 0.9700 | C35—O4 | 1.232 (5) |
C16—H16B | 0.9700 | C35—N4 | 1.340 (6) |
C17—O2 | 1.236 (5) | C35—C36 | 1.510 (6) |
C17—N2 | 1.346 (5) | C36—H36A | 0.9600 |
C17—C18 | 1.486 (6) | C36—H36B | 0.9600 |
C18—H18A | 0.9600 | C36—H36C | 0.9600 |
C18—H18B | 0.9600 | N2—H2N | 0.87 (6) |
C18—H18C | 0.9600 | N4—H4N | 0.90 (4) |
C19—N3 | 1.464 (4) | ||
C2—C1—C6 | 120.0 (3) | C21—C20—C19 | 122.6 (3) |
C2—C1—N1 | 120.1 (3) | C25—C20—C19 | 118.8 (3) |
C6—C1—N1 | 119.9 (3) | C22—C21—C20 | 119.9 (4) |
C1—C2—C3 | 118.6 (4) | C22—C21—H21 | 120.1 |
C1—C2—H2 | 120.7 | C20—C21—H21 | 120.1 |
C3—C2—H2 | 120.7 | C21—C22—C23 | 120.5 (5) |
C4—C3—C2 | 121.2 (5) | C21—C22—H22 | 119.7 |
C4—C3—H3 | 119.4 | C23—C22—H22 | 119.7 |
C2—C3—H3 | 119.4 | C24—C23—C22 | 119.7 (4) |
C5—C4—C3 | 119.3 (4) | C24—C23—H23 | 120.2 |
C5—C4—H4 | 120.4 | C22—C23—H23 | 120.2 |
C3—C4—H4 | 120.4 | C23—C24—C25 | 120.8 (4) |
C4—C5—C6 | 121.2 (4) | C23—C24—H24 | 119.6 |
C4—C5—H5 | 119.4 | C25—C24—H24 | 119.6 |
C6—C5—H5 | 119.4 | C24—C25—C20 | 120.4 (5) |
C5—C6—C1 | 119.7 (4) | C24—C25—H25 | 119.8 |
C5—C6—H6 | 120.1 | C20—C25—H25 | 119.8 |
C1—C6—H6 | 120.1 | C31—C26—C27 | 120.3 (3) |
N1—C7—C8 | 115.7 (3) | C31—C26—N3 | 119.3 (3) |
N1—C7—S1 | 109.0 (2) | C27—C26—N3 | 120.4 (3) |
C8—C7—S1 | 109.9 (2) | C28—C27—C26 | 119.8 (4) |
N1—C7—H7 | 107.3 | C28—C27—H27 | 120.1 |
C8—C7—H7 | 107.3 | C26—C27—H27 | 120.1 |
S1—C7—H7 | 107.3 | C29—C28—C27 | 120.2 (4) |
C13—C8—C9 | 119.3 (4) | C29—C28—H28 | 119.9 |
C13—C8—C7 | 118.9 (4) | C27—C28—H28 | 119.9 |
C9—C8—C7 | 121.8 (3) | C30—C29—C28 | 120.3 (4) |
C8—C9—C10 | 116.8 (4) | C30—C29—H29 | 119.9 |
C8—C9—H9 | 121.6 | C28—C29—H29 | 119.9 |
C10—C9—H9 | 121.6 | C29—C30—C31 | 120.2 (4) |
C11—C10—C9 | 121.2 (5) | C29—C30—H30 | 119.9 |
C11—C10—H10 | 119.4 | C31—C30—H30 | 119.9 |
C9—C10—H10 | 119.4 | C26—C31—C30 | 119.3 (4) |
C10—C11—C12 | 121.8 (5) | C26—C31—H31 | 120.4 |
C10—C11—H11 | 119.1 | C30—C31—H31 | 120.4 |
C12—C11—H11 | 119.1 | O3—C32—N3 | 120.0 (3) |
C11—C12—C13 | 120.0 (5) | O3—C32—C33 | 120.1 (3) |
C11—C12—H12 | 120.0 | N3—C32—C33 | 119.7 (3) |
C13—C12—H12 | 120.0 | N4—C33—C34 | 112.9 (3) |
C8—C13—C12 | 120.8 (5) | N4—C33—C32 | 109.4 (3) |
C8—C13—H13 | 119.6 | C34—C33—C32 | 116.3 (3) |
C12—C13—H13 | 119.6 | N4—C33—H33 | 105.8 |
O1—C14—N1 | 123.4 (3) | C34—C33—H33 | 105.8 |
O1—C14—C15 | 122.1 (3) | C32—C33—H33 | 105.8 |
N1—C14—C15 | 114.5 (3) | C33—C34—S2 | 108.6 (3) |
N2—C15—C14 | 110.3 (3) | C33—C34—H34A | 110.0 |
N2—C15—C16 | 111.1 (3) | S2—C34—H34A | 110.0 |
C14—C15—C16 | 109.9 (3) | C33—C34—H34B | 110.0 |
N2—C15—H15 | 108.5 | S2—C34—H34B | 110.0 |
C14—C15—H15 | 108.5 | H34A—C34—H34B | 108.3 |
C16—C15—H15 | 108.5 | O4—C35—N4 | 121.3 (4) |
C15—C16—S1 | 112.7 (2) | O4—C35—C36 | 121.8 (5) |
C15—C16—H16A | 109.1 | N4—C35—C36 | 116.8 (5) |
S1—C16—H16A | 109.1 | C14—N1—C1 | 120.3 (3) |
C15—C16—H16B | 109.1 | C14—N1—C7 | 117.3 (3) |
S1—C16—H16B | 109.1 | C1—N1—C7 | 122.4 (3) |
H16A—C16—H16B | 107.8 | C17—N2—C15 | 122.7 (3) |
O2—C17—N2 | 119.3 (3) | C17—N2—H2N | 126 (4) |
O2—C17—C18 | 123.2 (3) | C15—N2—H2N | 111 (4) |
N2—C17—C18 | 117.5 (4) | C32—N3—C26 | 118.4 (3) |
N3—C19—C20 | 114.2 (3) | C32—N3—C19 | 128.0 (3) |
N3—C19—S2 | 112.6 (2) | C26—N3—C19 | 113.5 (2) |
C20—C19—S2 | 111.1 (2) | C35—N4—C33 | 122.7 (3) |
N3—C19—H19 | 106.1 | C35—N4—H4N | 135 (2) |
C20—C19—H19 | 106.1 | C33—N4—H4N | 102 (2) |
S2—C19—H19 | 106.1 | C16—S1—C7 | 97.23 (17) |
C21—C20—C25 | 118.6 (3) | C34—S2—C19 | 95.94 (15) |
C6—C1—C2—C3 | −2.1 (5) | C29—C30—C31—C26 | 0.5 (7) |
N1—C1—C2—C3 | 178.6 (3) | O3—C32—C33—N4 | 36.7 (4) |
C1—C2—C3—C4 | 2.6 (7) | N3—C32—C33—N4 | −147.8 (3) |
C2—C3—C4—C5 | −1.7 (7) | O3—C32—C33—C34 | 166.0 (3) |
C3—C4—C5—C6 | 0.2 (7) | N3—C32—C33—C34 | −18.5 (4) |
C4—C5—C6—C1 | 0.2 (6) | N4—C33—C34—S2 | −177.7 (2) |
C2—C1—C6—C5 | 0.8 (5) | C32—C33—C34—S2 | 54.8 (3) |
N1—C1—C6—C5 | −179.9 (3) | O1—C14—N1—C1 | −1.1 (5) |
N1—C7—C8—C13 | 106.9 (4) | C15—C14—N1—C1 | 177.6 (3) |
S1—C7—C8—C13 | −129.2 (3) | O1—C14—N1—C7 | 179.9 (3) |
N1—C7—C8—C9 | −74.5 (4) | C15—C14—N1—C7 | −1.3 (4) |
S1—C7—C8—C9 | 49.4 (4) | C2—C1—N1—C14 | −62.4 (4) |
C13—C8—C9—C10 | −2.3 (6) | C6—C1—N1—C14 | 118.4 (4) |
C7—C8—C9—C10 | 179.1 (3) | C2—C1—N1—C7 | 116.5 (4) |
C8—C9—C10—C11 | 0.7 (7) | C6—C1—N1—C7 | −62.7 (4) |
C9—C10—C11—C12 | −0.2 (8) | C8—C7—N1—C14 | −174.3 (3) |
C10—C11—C12—C13 | 1.3 (9) | S1—C7—N1—C14 | 61.3 (3) |
C9—C8—C13—C12 | 3.5 (6) | C8—C7—N1—C1 | 6.7 (4) |
C7—C8—C13—C12 | −177.9 (4) | S1—C7—N1—C1 | −117.7 (3) |
C11—C12—C13—C8 | −3.0 (8) | O2—C17—N2—C15 | −2.4 (6) |
O1—C14—C15—N2 | −6.0 (5) | C18—C17—N2—C15 | 177.4 (3) |
N1—C14—C15—N2 | 175.3 (3) | C14—C15—N2—C17 | −152.0 (3) |
O1—C14—C15—C16 | 116.8 (4) | C16—C15—N2—C17 | 85.9 (4) |
N1—C14—C15—C16 | −61.9 (4) | O3—C32—N3—C26 | −4.8 (5) |
N2—C15—C16—S1 | 179.1 (3) | C33—C32—N3—C26 | 179.7 (3) |
C14—C15—C16—S1 | 56.7 (4) | O3—C32—N3—C19 | 177.3 (3) |
N3—C19—C20—C21 | −34.8 (4) | C33—C32—N3—C19 | 1.8 (5) |
S2—C19—C20—C21 | 93.9 (3) | C31—C26—N3—C32 | 117.9 (4) |
N3—C19—C20—C25 | 147.0 (3) | C27—C26—N3—C32 | −64.9 (4) |
S2—C19—C20—C25 | −84.3 (3) | C31—C26—N3—C19 | −63.9 (4) |
C25—C20—C21—C22 | 2.0 (5) | C27—C26—N3—C19 | 113.2 (3) |
C19—C20—C21—C22 | −176.3 (3) | C20—C19—N3—C32 | 104.5 (4) |
C20—C21—C22—C23 | 0.0 (6) | S2—C19—N3—C32 | −23.5 (4) |
C21—C22—C23—C24 | −2.2 (7) | C20—C19—N3—C26 | −73.5 (3) |
C22—C23—C24—C25 | 2.4 (8) | S2—C19—N3—C26 | 158.6 (2) |
C23—C24—C25—C20 | −0.4 (7) | O4—C35—N4—C33 | 1.1 (6) |
C21—C20—C25—C24 | −1.8 (6) | C36—C35—N4—C33 | −177.4 (4) |
C19—C20—C25—C24 | 176.5 (4) | C34—C33—N4—C35 | −74.5 (4) |
C31—C26—C27—C28 | −1.9 (6) | C32—C33—N4—C35 | 56.6 (4) |
N3—C26—C27—C28 | −179.0 (3) | C15—C16—S1—C7 | −1.7 (4) |
C26—C27—C28—C29 | 1.3 (6) | N1—C7—S1—C16 | −53.5 (3) |
C27—C28—C29—C30 | 0.2 (7) | C8—C7—S1—C16 | 178.7 (3) |
C28—C29—C30—C31 | −1.1 (7) | C33—C34—S2—C19 | −65.8 (2) |
C27—C26—C31—C30 | 1.0 (6) | N3—C19—S2—C34 | 50.5 (3) |
N3—C26—C31—C30 | 178.1 (4) | C20—C19—S2—C34 | −79.1 (2) |
Symmetry code: (i) −y, −x, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1 | 0.88 (6) | 2.22 (5) | 2.678 (4) | 113 (5) |
N4—H4N···O2 | 0.90 (4) | 2.03 (4) | 2.899 (5) | 162 (4) |
C7—H7···O3 | 0.98 | 2.50 | 3.241 (4) | 132 |
C21—H21···O4 | 0.93 | 2.48 | 3.375 (5) | 162 |
Acknowledgements
We acknowledge NSF funding (CHEM-0131112) for the X-ray diffractometer. We also express gratitude to Euticals for the gift of T3P in 2-methyltetrahydrofuran, and to Oakwood Products for the gift of N-acetyl-L-cysteine.
References
Bruker (2001). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Potts, K. T., Baum, J., Houghton, E., Roy, D. N. & Singh, U. P. (1974). J. Org. Chem. 39, 3619–3627. CrossRef CAS Web of Science Google Scholar
Raasch, M. S. (1974). J. Heterocycl. Chem. 11, 587–593. CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Yennawar, H. P., Bendinsky, R. V., Coyle, D. J., Cali, A. S. & Silverberg, L. J. (2014). Acta Cryst. E70, o465. CSD CrossRef IUCr Journals Google Scholar
Yennawar, H. P. & Silverberg, L. J. (2014). Acta Cryst. E70, o133. CSD CrossRef IUCr Journals Google Scholar
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