research communications
Crystal structures of 2-benzylamino-4-(4-bromophenyl)-6,7,8,9-tetrahydro-5H-cyclohepta[b]pyridine-3-carbonitrile and 2-benzylamino-4-(4-chlorophenyl)-6,7,8,9-tetrahydro-5H-cyclohepta[b]pyridine-3-carbonitrile
aDepartment of Physics, The Madura College, Madurai 625 011, India, bDepartment of Organic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai 625 021, India, and cDepartment of Food Science and Technology, University of Ruhuna, Mapalana, Kamburupitiya 81100, Sri Lanka
*Correspondence e-mail: plakshmannilantha@ymail.com
In the title compounds, C24H22BrN3, (I), and C24H22ClN3, (II), the 2-aminopyridine ring is fused with a cycloheptane ring, which adopts a half-chair conformation. The planes of the phenyl and benzene rings are inclined to that of the central pyridine ring [r.m.s. deviations = 0.0083 (1) and 0.0093 (1) Å for (I) and (II), respectively] by 62.47 (17) and 72.51 (14)°, respectively, in (I), and by 71.44 (9) and 54.90 (8)°, respectively, in (II). The planes of the aromatic rings are inclined to one another by 53.82 (17)° in (I) and by 58.04 (9)° in (II). In the crystals of both (I) and (II), pairs of N—H⋯Nnitrile hydrogen bonds link the molecules, forming inversion dimers with R22(12) ring motifs. In (I), the resulting dimers are connected through C—H⋯Br hydrogen bonds, forming sheets parallel to (10-1), and π–π interactions [inter-centroid distance = 3.7821 (16) Å] involving inversion-related pyridine rings, forming a three-dimensional network. In (II), the resulting dimers are connected through π–π interactions [inter-centroid distance = 3.771 (2) Å] involving inversion-related pyridine rings, forming a two-dimensional network lying parallel to (001).
1. Chemical context
The heterocyclic skeleton containing a nitrogen atom is the basis of many essential pharmaceuticals and of many physiologically active natural products. Molecules containing heterocyclic substructures continue to be attractive targets for synthesis since they often exhibit diverse and important biological properties. Pyridine is used in the pharmaceutical industry as a raw material for various drugs, vitamins and fungicides, and as a solvent (Shinkai et al., 2000; Jansen et al., 2001; Amr et al., 2006). Pyridines are also omnipresent in medicaments and in agrochemicals (Tomlin, 1994). Pyridine derivatives have occupied a unique position in medicinal chemistry. Among them, 2-amino-3-cyanopyridines have been identified as IKK-β inhibitors (Murata et al., 2003). Many fused cyanopyridines have also been shown to have a wide spectrum of biological activity (Boschelli et al., 2004). Our interest in the preparation of pharmacologically active 3-cyanopyridine compounds led us to synthesize the title compounds and we report herein on their crystal structures.
2. Structural commentary
The molecular structures of the title compounds, (I) and (II), are shown in Figs. 1 and 2, respectively. The bromo derivative (I), crystallizes in the monoclinic P21/n while the chloro derivative (II), crystallizes in the triclinic P.
In both compounds, the pyridine ring is connected to a benzene ring by a –CH2—NH2– chain, as found in a similar structure N6-(4-fluorobenzyl)-3-nitropyridine-2,6-diamine (Ge & Qian, 2011). As expected, the pyridine ring (C2–C6/N3) is planar with r.m.s. deviations of 0.0083 and 0.0093 Å in compounds (I) and (II), respectively. In both compounds, the cycloheptane ring adopts a half-chair conformation, with puckering parameters Q2 = 0.415 (3) Å, φ2 = 310.1 (4)° and Q3 = 0.637 (3) Å and φ3 = 283.4 (3)° for compound (I) and Q2 = 0.475 (2) Å, φ2 = 310.3 (2)° and Q3 = 0.635 (2) Å and φ3 = 283.58 (17)° for compound (II). The amine N atom, N2, attached to the pyridine ring (N3/C2–C6) deviates by only 0.0107 (1) and 0.0073 (1) Å from the ring plane in (I) and (II), respectively. rotates the benzene ring (C31–C36) out of the plane of the central pyridine ring by 72.51 (14)° in compound (I) and by only 54.90 (8)° in compound (II). The benzene ring is inclined to the phenyl ring (C22–C27) by 53.82 (17) in (I) and by 58.04 (9)° in (II).
3. Supramolecular features
In the crystal of (I), molecules are linked by pairs of N—H⋯Nnitrile hydrogen bonds, forming inversion dimers with (12) ring motifs (Table 1 and Fig. 3). The resulting dimers are connected through C—H⋯Br hydrogen bonds, forming sheets lying parallel to (10). The sheets are connected by weak π–π stacking interactions involving adjacent inversion-related pyridine rings with a centroid-to-centroid distance of 3.7710 (7) Å, as shown in Fig. 3. These interactions lead to the formation of a three-dimensional network.
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In the crystal of (II), molecules are also linked by pairs of N—H⋯Nnitrile hydrogen bonds, forming inversion dimers with (12) ring motifs (Table 2 and Fig. 4). The dimers are connected through weak π–π interactions involving inversion-related pyridine rings with a centroid-to-centroid distance of 3.7818 (2) Å (Fig. 4). The resulting structure is a two-dimensional network lying parallel to (001).
4. Synthesis and crystallization
Compounds (I) and (II) were prepared in a similar manner using 4-bromo aldehyde (1 mmol) for compound (I) and 4-chloro aldehyde (1 mmol) for compound (II). A mixture of cycloheptanone (1 mmol), aromatic aldehyde (1 mmol), malononitrile (1 mmol) and benzylamine (1mmol) were taken in ethanol (10 ml) to which p-TSA (p-toluenesulfonic acid) (1.0 mmol) was added. The reaction mixture was heated under reflux for 2–3 h. On completion of the reaction, verified by (TLC), the mixture was poured into crushed ice and extracted with ethyl acetate. The excess solvent was removed under vacuum and the residue was subjected to using a petroleum ether/ethyl acetate mixture (97:3 v/v) as to afford the pure products. They were recrystallized from ethyl acetate, giving colourless crystals of compounds (I) [m.p. 417 K; yield 74%] and (II) [m.p. 397 K; yield 75%].
5. Database survey
A similar structure reported in the literature, 2-(4-bromophenyl)-4-(4-methoxyphenyl)-6,7,8,9-tetrahydro-5H-cyclohepta[b]pyridine (Çelik et al., 2013) also has a chair conformation of the cycloheptane ring and a planar conformation of the pyridine ring, as found for (I) and (II). In compounds (I) and (II) the C—N bond lengths in the –CH2—NH2– chain, viz. C6—N2 and C21—N2, are 1.350 (3) and 1.441 (3) Å, respectively, in (I) and 1.354 (2) and 1.442 (2) Å, respectively, in (II). These distances are similar to those reported for N6-(4-fluorobenzyl)-3-nitropyridine-2,6-diamine (Ge & Qian, 2011), viz. 1.341 (3) and 1.454 (3) Å, respectively.
6. Refinement
Crystal data, data collection and structure . The NH and C-bound H atoms were placed in calculated positions and allowed to ride on their carrier atoms: N—H = 0.86 Å and C—H = 0.93–0.97 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(N,C) for other H atoms.
details are summarized in Table 3Supporting information
https://doi.org/10.1107/S2056989014025936/su5027sup1.cif
contains datablocks global, I, II. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989014025936/su5027Isup2.hkl
Structure factors: contains datablock II. DOI: https://doi.org/10.1107/S2056989014025936/su5027IIsup3.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989014025936/su5027Isup4.cml
Supporting information file. DOI: https://doi.org/10.1107/S2056989014025936/su5027IIsup5.cml
For both compounds, data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009). Software used to prepare material for publication: SHELXL2014 (Sheldrick, 2008) for (I); SHELXL97 (Sheldrick, 2008) for (II).C24H22BrN3 | F(000) = 888 |
Mr = 432.35 | Dx = 1.383 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 8.9710 (3) Å | Cell parameters from 2000 reflections |
b = 9.3794 (4) Å | θ = 2–31° |
c = 24.9788 (9) Å | µ = 1.99 mm−1 |
β = 99.002 (2)° | T = 293 K |
V = 2075.89 (14) Å3 | Block, colourless |
Z = 4 | 0.21 × 0.19 × 0.18 mm |
Bruker Kappa APEXII diffractometer | 2927 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.040 |
ω and φ scans | θmax = 25.5°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −10→10 |
Tmin = 0.967, Tmax = 0.974 | k = −11→11 |
51599 measured reflections | l = −30→30 |
3863 independent reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.099 | w = 1/[σ2(Fo2) + (0.0313P)2 + 2.0872P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
3863 reflections | Δρmax = 0.42 e Å−3 |
253 parameters | Δρmin = −0.58 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.1307 (3) | 0.3845 (3) | −0.03963 (10) | 0.0396 (6) | |
C2 | 0.2856 (3) | 0.3506 (3) | −0.02221 (10) | 0.0328 (6) | |
C3 | 0.3766 (3) | 0.3123 (3) | −0.06035 (10) | 0.0315 (5) | |
C4 | 0.5237 (3) | 0.2684 (3) | −0.04248 (10) | 0.0340 (6) | |
C5 | 0.5720 (3) | 0.2670 (3) | 0.01347 (11) | 0.0357 (6) | |
C6 | 0.3445 (3) | 0.3496 (3) | 0.03339 (10) | 0.0344 (6) | |
C7 | 0.6278 (3) | 0.2236 (3) | −0.08138 (11) | 0.0440 (7) | |
H7A | 0.7181 | 0.2819 | −0.0748 | 0.053* | |
H7B | 0.5783 | 0.2430 | −0.1180 | 0.053* | |
C8 | 0.6743 (3) | 0.0676 (3) | −0.07771 (12) | 0.0515 (8) | |
H8A | 0.5864 | 0.0101 | −0.0742 | 0.062* | |
H8B | 0.7083 | 0.0404 | −0.1113 | 0.062* | |
C9 | 0.7981 (3) | 0.0338 (3) | −0.03080 (12) | 0.0519 (8) | |
H9A | 0.8247 | −0.0660 | −0.0330 | 0.062* | |
H9B | 0.8866 | 0.0894 | −0.0351 | 0.062* | |
C10 | 0.7601 (3) | 0.0622 (3) | 0.02499 (12) | 0.0508 (8) | |
H10A | 0.8436 | 0.0298 | 0.0517 | 0.061* | |
H10B | 0.6724 | 0.0058 | 0.0296 | 0.061* | |
C11 | 0.7278 (3) | 0.2176 (3) | 0.03676 (12) | 0.0470 (7) | |
H11A | 0.7424 | 0.2313 | 0.0757 | 0.056* | |
H11B | 0.8007 | 0.2772 | 0.0224 | 0.056* | |
C21 | 0.3110 (3) | 0.3992 (3) | 0.12794 (11) | 0.0481 (7) | |
H21A | 0.3218 | 0.4992 | 0.1377 | 0.058* | |
H21B | 0.4101 | 0.3557 | 0.1358 | 0.058* | |
C22 | 0.2093 (3) | 0.3296 (3) | 0.16277 (11) | 0.0399 (6) | |
C23 | 0.2260 (4) | 0.3649 (4) | 0.21649 (13) | 0.0708 (10) | |
H23 | 0.2957 | 0.4342 | 0.2302 | 0.085* | |
C24 | 0.1401 (5) | 0.2983 (5) | 0.25061 (15) | 0.0878 (13) | |
H24 | 0.1530 | 0.3231 | 0.2871 | 0.105* | |
C25 | 0.0380 (5) | 0.1977 (5) | 0.23151 (18) | 0.0812 (12) | |
H25 | −0.0183 | 0.1521 | 0.2547 | 0.097* | |
C26 | 0.0187 (5) | 0.1640 (5) | 0.17855 (19) | 0.0843 (12) | |
H26 | −0.0527 | 0.0959 | 0.1650 | 0.101* | |
C27 | 0.1039 (4) | 0.2295 (4) | 0.14421 (14) | 0.0629 (9) | |
H27 | 0.0890 | 0.2049 | 0.1077 | 0.075* | |
C31 | 0.3078 (3) | 0.3224 (3) | −0.11850 (10) | 0.0320 (6) | |
C32 | 0.2628 (4) | 0.2034 (3) | −0.14877 (11) | 0.0512 (8) | |
H32 | 0.2815 | 0.1134 | −0.1336 | 0.061* | |
C33 | 0.1904 (4) | 0.2159 (3) | −0.20130 (12) | 0.0564 (8) | |
H33 | 0.1598 | 0.1348 | −0.2215 | 0.068* | |
C34 | 0.1638 (3) | 0.3475 (3) | −0.22362 (10) | 0.0427 (7) | |
C35 | 0.2063 (3) | 0.4684 (3) | −0.19455 (11) | 0.0473 (7) | |
H35 | 0.1864 | 0.5580 | −0.2099 | 0.057* | |
C36 | 0.2793 (3) | 0.4546 (3) | −0.14193 (11) | 0.0420 (6) | |
H36 | 0.3099 | 0.5360 | −0.1219 | 0.050* | |
N1 | 0.0060 (3) | 0.4098 (3) | −0.05266 (10) | 0.0611 (8) | |
N2 | 0.2581 (3) | 0.3886 (3) | 0.07055 (9) | 0.0475 (6) | |
H2 | 0.1649 | 0.4085 | 0.0592 | 0.057* | |
N3 | 0.4865 (2) | 0.3065 (2) | 0.05039 (8) | 0.0364 (5) | |
Br1 | 0.07272 (5) | 0.36307 (5) | −0.29690 (2) | 0.07749 (17) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0387 (16) | 0.0493 (17) | 0.0303 (13) | 0.0095 (13) | 0.0039 (11) | −0.0035 (12) |
C2 | 0.0278 (12) | 0.0349 (14) | 0.0347 (13) | 0.0055 (11) | 0.0013 (10) | 0.0019 (11) |
C3 | 0.0329 (13) | 0.0272 (13) | 0.0341 (13) | 0.0021 (10) | 0.0047 (10) | −0.0001 (10) |
C4 | 0.0289 (13) | 0.0318 (13) | 0.0414 (14) | 0.0030 (11) | 0.0058 (11) | −0.0005 (11) |
C5 | 0.0287 (13) | 0.0345 (14) | 0.0424 (14) | 0.0036 (11) | 0.0010 (11) | −0.0025 (11) |
C6 | 0.0329 (13) | 0.0355 (14) | 0.0345 (13) | 0.0051 (11) | 0.0041 (10) | 0.0025 (11) |
C7 | 0.0355 (14) | 0.0557 (18) | 0.0424 (15) | 0.0074 (13) | 0.0105 (12) | 0.0055 (13) |
C8 | 0.0460 (17) | 0.0580 (19) | 0.0516 (17) | 0.0139 (15) | 0.0106 (14) | −0.0072 (15) |
C9 | 0.0439 (17) | 0.0483 (18) | 0.0636 (19) | 0.0153 (14) | 0.0085 (14) | −0.0014 (15) |
C10 | 0.0396 (16) | 0.0541 (19) | 0.0566 (18) | 0.0157 (14) | 0.0010 (13) | 0.0057 (15) |
C11 | 0.0321 (14) | 0.0582 (19) | 0.0474 (16) | 0.0094 (13) | −0.0036 (12) | −0.0064 (14) |
C21 | 0.0487 (17) | 0.0607 (19) | 0.0340 (14) | 0.0015 (14) | 0.0035 (12) | 0.0033 (13) |
C22 | 0.0400 (15) | 0.0438 (16) | 0.0360 (14) | 0.0105 (12) | 0.0066 (11) | 0.0013 (12) |
C23 | 0.086 (3) | 0.087 (3) | 0.0424 (18) | −0.019 (2) | 0.0176 (17) | −0.0114 (18) |
C24 | 0.106 (3) | 0.118 (4) | 0.047 (2) | 0.006 (3) | 0.037 (2) | 0.002 (2) |
C25 | 0.068 (3) | 0.095 (3) | 0.087 (3) | 0.008 (2) | 0.035 (2) | 0.033 (3) |
C26 | 0.077 (3) | 0.087 (3) | 0.090 (3) | −0.023 (2) | 0.019 (2) | 0.012 (2) |
C27 | 0.068 (2) | 0.071 (2) | 0.0505 (19) | −0.0095 (19) | 0.0094 (16) | −0.0065 (17) |
C31 | 0.0276 (13) | 0.0357 (14) | 0.0334 (13) | 0.0045 (11) | 0.0071 (10) | −0.0002 (11) |
C32 | 0.078 (2) | 0.0347 (15) | 0.0397 (15) | −0.0015 (15) | 0.0057 (15) | 0.0002 (13) |
C33 | 0.084 (2) | 0.0457 (19) | 0.0381 (16) | −0.0168 (17) | 0.0037 (15) | −0.0081 (14) |
C34 | 0.0402 (15) | 0.0544 (18) | 0.0320 (13) | −0.0076 (13) | 0.0006 (11) | 0.0001 (13) |
C35 | 0.0580 (18) | 0.0404 (16) | 0.0399 (15) | 0.0015 (14) | −0.0037 (13) | 0.0031 (13) |
C36 | 0.0502 (16) | 0.0357 (15) | 0.0378 (14) | 0.0007 (13) | −0.0002 (12) | −0.0044 (12) |
N1 | 0.0367 (14) | 0.094 (2) | 0.0506 (15) | 0.0198 (14) | −0.0004 (11) | −0.0073 (14) |
N2 | 0.0377 (12) | 0.0729 (18) | 0.0316 (11) | 0.0193 (12) | 0.0044 (10) | 0.0047 (11) |
N3 | 0.0324 (11) | 0.0394 (12) | 0.0352 (11) | 0.0067 (10) | −0.0012 (9) | 0.0002 (10) |
Br1 | 0.0937 (3) | 0.0883 (3) | 0.04077 (19) | −0.0216 (2) | −0.01969 (17) | 0.00315 (18) |
C1—N1 | 1.140 (3) | C21—C22 | 1.505 (4) |
C1—C2 | 1.426 (4) | C21—H21A | 0.9700 |
C2—C3 | 1.395 (3) | C21—H21B | 0.9700 |
C2—C6 | 1.406 (3) | C22—C27 | 1.361 (4) |
C3—C4 | 1.388 (3) | C22—C23 | 1.367 (4) |
C3—C31 | 1.490 (3) | C23—C24 | 1.384 (5) |
C4—C5 | 1.397 (4) | C23—H23 | 0.9300 |
C4—C7 | 1.508 (4) | C24—C25 | 1.349 (6) |
C5—N3 | 1.341 (3) | C24—H24 | 0.9300 |
C5—C11 | 1.501 (3) | C25—C26 | 1.345 (6) |
C6—N3 | 1.340 (3) | C25—H25 | 0.9300 |
C6—N2 | 1.350 (3) | C26—C27 | 1.379 (5) |
C7—C8 | 1.521 (4) | C26—H26 | 0.9300 |
C7—H7A | 0.9700 | C27—H27 | 0.9300 |
C7—H7B | 0.9700 | C31—C32 | 1.372 (4) |
C8—C9 | 1.517 (4) | C31—C36 | 1.378 (4) |
C8—H8A | 0.9700 | C32—C33 | 1.375 (4) |
C8—H8B | 0.9700 | C32—H32 | 0.9300 |
C9—C10 | 1.509 (4) | C33—C34 | 1.359 (4) |
C9—H9A | 0.9700 | C33—H33 | 0.9300 |
C9—H9B | 0.9700 | C34—C35 | 1.368 (4) |
C10—C11 | 1.524 (4) | C34—Br1 | 1.890 (3) |
C10—H10A | 0.9700 | C35—C36 | 1.380 (4) |
C10—H10B | 0.9700 | C35—H35 | 0.9300 |
C11—H11A | 0.9700 | C36—H36 | 0.9300 |
C11—H11B | 0.9700 | N2—H2 | 0.8600 |
C21—N2 | 1.441 (3) | ||
N1—C1—C2 | 178.5 (3) | N2—C21—C22 | 114.2 (2) |
C3—C2—C6 | 120.2 (2) | N2—C21—H21A | 108.7 |
C3—C2—C1 | 119.7 (2) | C22—C21—H21A | 108.7 |
C6—C2—C1 | 120.0 (2) | N2—C21—H21B | 108.7 |
C4—C3—C2 | 119.0 (2) | C22—C21—H21B | 108.7 |
C4—C3—C31 | 124.1 (2) | H21A—C21—H21B | 107.6 |
C2—C3—C31 | 116.8 (2) | C27—C22—C23 | 117.7 (3) |
C3—C4—C5 | 117.0 (2) | C27—C22—C21 | 123.6 (3) |
C3—C4—C7 | 121.9 (2) | C23—C22—C21 | 118.6 (3) |
C5—C4—C7 | 121.1 (2) | C22—C23—C24 | 120.6 (4) |
N3—C5—C4 | 124.4 (2) | C22—C23—H23 | 119.7 |
N3—C5—C11 | 114.6 (2) | C24—C23—H23 | 119.7 |
C4—C5—C11 | 121.0 (2) | C25—C24—C23 | 120.7 (4) |
N3—C6—N2 | 118.9 (2) | C25—C24—H24 | 119.7 |
N3—C6—C2 | 120.4 (2) | C23—C24—H24 | 119.7 |
N2—C6—C2 | 120.6 (2) | C26—C25—C24 | 119.2 (4) |
C4—C7—C8 | 114.9 (2) | C26—C25—H25 | 120.4 |
C4—C7—H7A | 108.6 | C24—C25—H25 | 120.4 |
C8—C7—H7A | 108.6 | C25—C26—C27 | 120.6 (4) |
C4—C7—H7B | 108.6 | C25—C26—H26 | 119.7 |
C8—C7—H7B | 108.6 | C27—C26—H26 | 119.7 |
H7A—C7—H7B | 107.5 | C22—C27—C26 | 121.2 (3) |
C9—C8—C7 | 114.1 (3) | C22—C27—H27 | 119.4 |
C9—C8—H8A | 108.7 | C26—C27—H27 | 119.4 |
C7—C8—H8A | 108.7 | C32—C31—C36 | 118.6 (2) |
C9—C8—H8B | 108.7 | C32—C31—C3 | 121.8 (2) |
C7—C8—H8B | 108.7 | C36—C31—C3 | 119.5 (2) |
H8A—C8—H8B | 107.6 | C31—C32—C33 | 120.7 (3) |
C10—C9—C8 | 115.6 (2) | C31—C32—H32 | 119.7 |
C10—C9—H9A | 108.4 | C33—C32—H32 | 119.7 |
C8—C9—H9A | 108.4 | C34—C33—C32 | 119.7 (3) |
C10—C9—H9B | 108.4 | C34—C33—H33 | 120.2 |
C8—C9—H9B | 108.4 | C32—C33—H33 | 120.2 |
H9A—C9—H9B | 107.4 | C33—C34—C35 | 121.2 (3) |
C9—C10—C11 | 115.1 (3) | C33—C34—Br1 | 119.3 (2) |
C9—C10—H10A | 108.5 | C35—C34—Br1 | 119.5 (2) |
C11—C10—H10A | 108.5 | C34—C35—C36 | 118.6 (3) |
C9—C10—H10B | 108.5 | C34—C35—H35 | 120.7 |
C11—C10—H10B | 108.5 | C36—C35—H35 | 120.7 |
H10A—C10—H10B | 107.5 | C31—C36—C35 | 121.2 (3) |
C5—C11—C10 | 114.5 (2) | C31—C36—H36 | 119.4 |
C5—C11—H11A | 108.6 | C35—C36—H36 | 119.4 |
C10—C11—H11A | 108.6 | C6—N2—C21 | 124.6 (2) |
C5—C11—H11B | 108.6 | C6—N2—H2 | 117.7 |
C10—C11—H11B | 108.6 | C21—N2—H2 | 117.7 |
H11A—C11—H11B | 107.6 | C6—N3—C5 | 118.9 (2) |
C6—C2—C3—C4 | 2.3 (4) | C22—C23—C24—C25 | −0.2 (7) |
C1—C2—C3—C4 | −174.8 (2) | C23—C24—C25—C26 | −1.0 (7) |
C6—C2—C3—C31 | −177.4 (2) | C24—C25—C26—C27 | 1.1 (7) |
C1—C2—C3—C31 | 5.5 (4) | C23—C22—C27—C26 | −1.1 (5) |
C2—C3—C4—C5 | −0.7 (4) | C21—C22—C27—C26 | 176.7 (3) |
C31—C3—C4—C5 | 179.0 (2) | C25—C26—C27—C22 | 0.0 (6) |
C2—C3—C4—C7 | 179.2 (2) | C4—C3—C31—C32 | 75.4 (4) |
C31—C3—C4—C7 | −1.1 (4) | C2—C3—C31—C32 | −104.9 (3) |
C3—C4—C5—N3 | −0.7 (4) | C4—C3—C31—C36 | −108.7 (3) |
C7—C4—C5—N3 | 179.4 (3) | C2—C3—C31—C36 | 71.0 (3) |
C3—C4—C5—C11 | 178.4 (2) | C36—C31—C32—C33 | −0.2 (4) |
C7—C4—C5—C11 | −1.5 (4) | C3—C31—C32—C33 | 175.6 (3) |
C3—C2—C6—N3 | −2.6 (4) | C31—C32—C33—C34 | 0.4 (5) |
C1—C2—C6—N3 | 174.5 (2) | C32—C33—C34—C35 | −0.7 (5) |
C3—C2—C6—N2 | 179.0 (2) | C32—C33—C34—Br1 | 177.1 (2) |
C1—C2—C6—N2 | −3.9 (4) | C33—C34—C35—C36 | 0.9 (5) |
C3—C4—C7—C8 | −114.6 (3) | Br1—C34—C35—C36 | −176.9 (2) |
C5—C4—C7—C8 | 65.3 (3) | C32—C31—C36—C35 | 0.5 (4) |
C4—C7—C8—C9 | −78.9 (3) | C3—C31—C36—C35 | −175.5 (2) |
C7—C8—C9—C10 | 61.7 (4) | C34—C35—C36—C31 | −0.8 (4) |
C8—C9—C10—C11 | −62.9 (4) | N3—C6—N2—C21 | 5.5 (4) |
N3—C5—C11—C10 | 116.6 (3) | C2—C6—N2—C21 | −176.0 (3) |
C4—C5—C11—C10 | −62.6 (4) | C22—C21—N2—C6 | −133.1 (3) |
C9—C10—C11—C5 | 79.7 (3) | N2—C6—N3—C5 | 179.6 (2) |
N2—C21—C22—C27 | 19.3 (4) | C2—C6—N3—C5 | 1.2 (4) |
N2—C21—C22—C23 | −162.8 (3) | C4—C5—N3—C6 | 0.5 (4) |
C27—C22—C23—C24 | 1.2 (5) | C11—C5—N3—C6 | −178.7 (2) |
C21—C22—C23—C24 | −176.7 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N1i | 0.86 | 2.28 | 3.010 (3) | 143 |
C21—H21B···Br1ii | 0.97 | 2.90 | 3.703 (3) | 141 |
Symmetry codes: (i) −x, −y+1, −z; (ii) x+1/2, −y+1/2, z+1/2. |
C24H22ClN3 | Z = 2 |
Mr = 387.89 | F(000) = 408 |
Triclinic, P1 | Dx = 1.299 Mg m−3 |
a = 9.002 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.097 (5) Å | Cell parameters from 2000 reflections |
c = 11.856 (5) Å | θ = 2–31° |
α = 94.939 (5)° | µ = 0.21 mm−1 |
β = 108.204 (5)° | T = 293 K |
γ = 101.272 (5)° | Block, colourless |
V = 991.3 (8) Å3 | 0.21 × 0.19 × 0.18 mm |
Bruker Kappa APEXII diffractometer | 2918 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.026 |
ω and φ scans | θmax = 25.5°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −10→10 |
Tmin = 0.967, Tmax = 0.974 | k = −12→12 |
24808 measured reflections | l = −14→14 |
3685 independent reflections |
Refinement on F2 | 1 restraint |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.037 | H-atom parameters constrained |
wR(F2) = 0.105 | w = 1/[σ2(Fo2) + (0.0486P)2 + 0.3383P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
3685 reflections | Δρmax = 0.19 e Å−3 |
253 parameters | Δρmin = −0.33 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.1170 (2) | 0.47342 (18) | 0.36822 (15) | 0.0401 (4) | |
C2 | 0.24864 (18) | 0.41014 (15) | 0.38041 (14) | 0.0327 (3) | |
C3 | 0.32569 (17) | 0.40885 (15) | 0.29430 (13) | 0.0304 (3) | |
C4 | 0.44508 (17) | 0.33539 (15) | 0.30821 (14) | 0.0321 (3) | |
C5 | 0.48147 (17) | 0.26963 (15) | 0.40915 (14) | 0.0331 (3) | |
C6 | 0.29611 (17) | 0.34315 (15) | 0.48044 (14) | 0.0320 (3) | |
C7 | 0.53288 (19) | 0.32240 (17) | 0.21988 (15) | 0.0395 (4) | |
H7A | 0.6478 | 0.3489 | 0.2631 | 0.047* | |
H7B | 0.5074 | 0.3854 | 0.1633 | 0.047* | |
C8 | 0.4910 (2) | 0.17808 (19) | 0.14983 (16) | 0.0477 (4) | |
H8A | 0.3760 | 0.1411 | 0.1274 | 0.057* | |
H8B | 0.5158 | 0.1839 | 0.0762 | 0.057* | |
C9 | 0.5782 (3) | 0.0790 (2) | 0.21741 (18) | 0.0540 (5) | |
H9A | 0.5446 | −0.0086 | 0.1652 | 0.065* | |
H9B | 0.6926 | 0.1124 | 0.2336 | 0.065* | |
C10 | 0.5522 (2) | 0.05584 (19) | 0.33498 (18) | 0.0516 (5) | |
H10A | 0.6113 | −0.0104 | 0.3685 | 0.062* | |
H10B | 0.4389 | 0.0163 | 0.3184 | 0.062* | |
C11 | 0.6037 (2) | 0.18367 (19) | 0.42923 (16) | 0.0451 (4) | |
H11A | 0.6223 | 0.1565 | 0.5081 | 0.054* | |
H11B | 0.7046 | 0.2386 | 0.4285 | 0.054* | |
C21 | 0.2814 (2) | 0.29636 (18) | 0.67846 (15) | 0.0416 (4) | |
H21A | 0.3240 | 0.3740 | 0.7428 | 0.050* | |
H21B | 0.3692 | 0.2540 | 0.6781 | 0.050* | |
C22 | 0.15556 (19) | 0.19495 (16) | 0.70552 (14) | 0.0347 (3) | |
C23 | 0.1853 (2) | 0.16979 (18) | 0.82224 (16) | 0.0449 (4) | |
H23 | 0.2789 | 0.2189 | 0.8823 | 0.054* | |
C24 | 0.0778 (3) | 0.0727 (2) | 0.85090 (19) | 0.0589 (5) | |
H24 | 0.0996 | 0.0564 | 0.9298 | 0.071* | |
C25 | −0.0605 (3) | 0.0004 (2) | 0.7635 (2) | 0.0629 (6) | |
H25 | −0.1323 | −0.0658 | 0.7826 | 0.075* | |
C26 | −0.0929 (2) | 0.0256 (2) | 0.6480 (2) | 0.0617 (5) | |
H26 | −0.1877 | −0.0228 | 0.5886 | 0.074* | |
C27 | 0.0142 (2) | 0.12280 (19) | 0.61870 (17) | 0.0503 (4) | |
H27 | −0.0092 | 0.1396 | 0.5399 | 0.060* | |
C31 | 0.28089 (17) | 0.49110 (15) | 0.19592 (14) | 0.0321 (3) | |
C32 | 0.2876 (2) | 0.62890 (17) | 0.22518 (15) | 0.0396 (4) | |
H32 | 0.3223 | 0.6683 | 0.3056 | 0.047* | |
C33 | 0.2437 (2) | 0.70820 (18) | 0.13681 (17) | 0.0459 (4) | |
H33 | 0.2491 | 0.8004 | 0.1574 | 0.055* | |
C34 | 0.19207 (19) | 0.64947 (18) | 0.01821 (16) | 0.0428 (4) | |
C35 | 0.1840 (2) | 0.51340 (19) | −0.01437 (16) | 0.0454 (4) | |
H35 | 0.1493 | 0.4748 | −0.0950 | 0.055* | |
C36 | 0.2284 (2) | 0.43515 (17) | 0.07516 (15) | 0.0395 (4) | |
H36 | 0.2231 | 0.3430 | 0.0540 | 0.047* | |
N1 | 0.0094 (2) | 0.51850 (19) | 0.36511 (16) | 0.0616 (5) | |
N2 | 0.22527 (17) | 0.34558 (15) | 0.56572 (13) | 0.0425 (3) | |
H2 | 0.1413 | 0.3786 | 0.5517 | 0.051* | |
N3 | 0.41191 (15) | 0.27423 (13) | 0.49346 (11) | 0.0349 (3) | |
Cl1 | 0.13087 (7) | 0.74901 (6) | −0.09170 (5) | 0.06667 (19) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0457 (9) | 0.0481 (10) | 0.0398 (9) | 0.0242 (8) | 0.0226 (7) | 0.0144 (7) |
C2 | 0.0336 (7) | 0.0323 (8) | 0.0369 (8) | 0.0132 (6) | 0.0151 (6) | 0.0062 (6) |
C3 | 0.0315 (7) | 0.0271 (8) | 0.0337 (8) | 0.0084 (6) | 0.0118 (6) | 0.0038 (6) |
C4 | 0.0294 (7) | 0.0317 (8) | 0.0382 (8) | 0.0096 (6) | 0.0141 (6) | 0.0050 (6) |
C5 | 0.0307 (7) | 0.0328 (8) | 0.0362 (8) | 0.0110 (6) | 0.0104 (6) | 0.0028 (6) |
C6 | 0.0328 (8) | 0.0297 (8) | 0.0369 (8) | 0.0093 (6) | 0.0153 (6) | 0.0047 (6) |
C7 | 0.0368 (8) | 0.0452 (9) | 0.0472 (9) | 0.0170 (7) | 0.0224 (7) | 0.0144 (8) |
C8 | 0.0523 (10) | 0.0567 (11) | 0.0441 (10) | 0.0229 (9) | 0.0246 (8) | 0.0062 (8) |
C9 | 0.0662 (12) | 0.0486 (11) | 0.0619 (12) | 0.0279 (9) | 0.0335 (10) | 0.0071 (9) |
C10 | 0.0646 (12) | 0.0436 (10) | 0.0629 (12) | 0.0302 (9) | 0.0318 (10) | 0.0148 (9) |
C11 | 0.0454 (9) | 0.0549 (11) | 0.0453 (10) | 0.0294 (8) | 0.0172 (8) | 0.0146 (8) |
C21 | 0.0435 (9) | 0.0471 (10) | 0.0368 (9) | 0.0101 (8) | 0.0168 (7) | 0.0088 (7) |
C22 | 0.0398 (8) | 0.0331 (8) | 0.0381 (8) | 0.0154 (7) | 0.0184 (7) | 0.0066 (6) |
C23 | 0.0513 (10) | 0.0473 (10) | 0.0398 (9) | 0.0150 (8) | 0.0171 (8) | 0.0111 (8) |
C24 | 0.0745 (14) | 0.0608 (13) | 0.0570 (12) | 0.0228 (11) | 0.0345 (11) | 0.0288 (10) |
C25 | 0.0589 (12) | 0.0536 (12) | 0.0923 (16) | 0.0156 (10) | 0.0404 (12) | 0.0339 (12) |
C26 | 0.0479 (11) | 0.0535 (12) | 0.0764 (14) | 0.0035 (9) | 0.0144 (10) | 0.0156 (11) |
C27 | 0.0498 (10) | 0.0527 (11) | 0.0455 (10) | 0.0092 (9) | 0.0127 (8) | 0.0119 (8) |
C31 | 0.0298 (7) | 0.0341 (8) | 0.0386 (8) | 0.0116 (6) | 0.0167 (6) | 0.0094 (6) |
C32 | 0.0413 (9) | 0.0368 (9) | 0.0408 (9) | 0.0121 (7) | 0.0123 (7) | 0.0060 (7) |
C33 | 0.0460 (9) | 0.0332 (9) | 0.0594 (11) | 0.0111 (7) | 0.0164 (8) | 0.0136 (8) |
C34 | 0.0384 (9) | 0.0483 (10) | 0.0500 (10) | 0.0146 (8) | 0.0195 (8) | 0.0240 (8) |
C35 | 0.0499 (10) | 0.0558 (11) | 0.0370 (9) | 0.0171 (8) | 0.0196 (8) | 0.0115 (8) |
C36 | 0.0457 (9) | 0.0380 (9) | 0.0416 (9) | 0.0158 (7) | 0.0206 (7) | 0.0072 (7) |
N1 | 0.0655 (10) | 0.0839 (13) | 0.0638 (11) | 0.0493 (10) | 0.0377 (9) | 0.0285 (9) |
N2 | 0.0472 (8) | 0.0511 (9) | 0.0466 (8) | 0.0259 (7) | 0.0281 (7) | 0.0202 (7) |
N3 | 0.0366 (7) | 0.0351 (7) | 0.0366 (7) | 0.0145 (6) | 0.0135 (6) | 0.0072 (6) |
Cl1 | 0.0687 (3) | 0.0744 (4) | 0.0699 (3) | 0.0251 (3) | 0.0271 (3) | 0.0466 (3) |
C1—N1 | 1.140 (2) | C21—C22 | 1.505 (2) |
C1—C2 | 1.428 (2) | C21—H21A | 0.9700 |
C2—C3 | 1.403 (2) | C21—H21B | 0.9700 |
C2—C6 | 1.408 (2) | C22—C27 | 1.378 (3) |
C3—C4 | 1.398 (2) | C22—C23 | 1.381 (2) |
C3—C31 | 1.489 (2) | C23—C24 | 1.380 (3) |
C4—C5 | 1.399 (2) | C23—H23 | 0.9300 |
C4—C7 | 1.508 (2) | C24—C25 | 1.366 (3) |
C5—N3 | 1.337 (2) | C24—H24 | 0.9300 |
C5—C11 | 1.505 (2) | C25—C26 | 1.366 (3) |
C6—N3 | 1.340 (2) | C25—H25 | 0.9300 |
C6—N2 | 1.354 (2) | C26—C27 | 1.382 (3) |
C7—C8 | 1.529 (3) | C26—H26 | 0.9300 |
C7—H7A | 0.9700 | C27—H27 | 0.9300 |
C7—H7B | 0.9700 | C31—C36 | 1.388 (2) |
C8—C9 | 1.520 (3) | C31—C32 | 1.389 (2) |
C8—H8A | 0.9700 | C32—C33 | 1.380 (2) |
C8—H8B | 0.9700 | C32—H32 | 0.9300 |
C9—C10 | 1.513 (3) | C33—C34 | 1.373 (3) |
C9—H9A | 0.9700 | C33—H33 | 0.9300 |
C9—H9B | 0.9700 | C34—C35 | 1.376 (3) |
C10—C11 | 1.524 (3) | C34—Cl1 | 1.7334 (17) |
C10—H10A | 0.9700 | C35—C36 | 1.383 (2) |
C10—H10B | 0.9700 | C35—H35 | 0.9300 |
C11—H11A | 0.9700 | C36—H36 | 0.9300 |
C11—H11B | 0.9700 | N2—H2 | 0.8600 |
C21—N2 | 1.442 (2) | ||
N1—C1—C2 | 174.73 (18) | N2—C21—C22 | 114.79 (14) |
C3—C2—C6 | 120.15 (13) | N2—C21—H21A | 108.6 |
C3—C2—C1 | 122.07 (14) | C22—C21—H21A | 108.6 |
C6—C2—C1 | 117.73 (14) | N2—C21—H21B | 108.6 |
C4—C3—C2 | 118.39 (14) | C22—C21—H21B | 108.6 |
C4—C3—C31 | 123.49 (13) | H21A—C21—H21B | 107.5 |
C2—C3—C31 | 118.06 (13) | C27—C22—C23 | 118.37 (16) |
C3—C4—C5 | 117.26 (13) | C27—C22—C21 | 123.14 (15) |
C3—C4—C7 | 123.47 (14) | C23—C22—C21 | 118.46 (15) |
C5—C4—C7 | 119.26 (13) | C24—C23—C22 | 120.88 (18) |
N3—C5—C4 | 124.52 (14) | C24—C23—H23 | 119.6 |
N3—C5—C11 | 114.38 (14) | C22—C23—H23 | 119.6 |
C4—C5—C11 | 121.08 (14) | C25—C24—C23 | 120.05 (19) |
N3—C6—N2 | 118.13 (14) | C25—C24—H24 | 120.0 |
N3—C6—C2 | 120.89 (13) | C23—C24—H24 | 120.0 |
N2—C6—C2 | 120.98 (13) | C24—C25—C26 | 119.80 (19) |
C4—C7—C8 | 113.51 (14) | C24—C25—H25 | 120.1 |
C4—C7—H7A | 108.9 | C26—C25—H25 | 120.1 |
C8—C7—H7A | 108.9 | C25—C26—C27 | 120.40 (19) |
C4—C7—H7B | 108.9 | C25—C26—H26 | 119.8 |
C8—C7—H7B | 108.9 | C27—C26—H26 | 119.8 |
H7A—C7—H7B | 107.7 | C22—C27—C26 | 120.48 (18) |
C9—C8—C7 | 114.77 (15) | C22—C27—H27 | 119.8 |
C9—C8—H8A | 108.6 | C26—C27—H27 | 119.8 |
C7—C8—H8A | 108.6 | C36—C31—C32 | 118.14 (14) |
C9—C8—H8B | 108.6 | C36—C31—C3 | 122.71 (14) |
C7—C8—H8B | 108.6 | C32—C31—C3 | 119.13 (14) |
H8A—C8—H8B | 107.6 | C33—C32—C31 | 121.05 (16) |
C10—C9—C8 | 116.06 (15) | C33—C32—H32 | 119.5 |
C10—C9—H9A | 108.3 | C31—C32—H32 | 119.5 |
C8—C9—H9A | 108.3 | C34—C33—C32 | 119.28 (16) |
C10—C9—H9B | 108.3 | C34—C33—H33 | 120.4 |
C8—C9—H9B | 108.3 | C32—C33—H33 | 120.4 |
H9A—C9—H9B | 107.4 | C33—C34—C35 | 121.39 (16) |
C9—C10—C11 | 115.01 (16) | C33—C34—Cl1 | 118.72 (14) |
C9—C10—H10A | 108.5 | C35—C34—Cl1 | 119.86 (14) |
C11—C10—H10A | 108.5 | C34—C35—C36 | 118.70 (16) |
C9—C10—H10B | 108.5 | C34—C35—H35 | 120.6 |
C11—C10—H10B | 108.5 | C36—C35—H35 | 120.6 |
H10A—C10—H10B | 107.5 | C35—C36—C31 | 121.43 (16) |
C5—C11—C10 | 113.24 (15) | C35—C36—H36 | 119.3 |
C5—C11—H11A | 108.9 | C31—C36—H36 | 119.3 |
C10—C11—H11A | 108.9 | C6—N2—C21 | 124.26 (14) |
C5—C11—H11B | 108.9 | C6—N2—H2 | 117.9 |
C10—C11—H11B | 108.9 | C21—N2—H2 | 117.9 |
H11A—C11—H11B | 107.7 | C5—N3—C6 | 118.73 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N1i | 0.86 | 2.26 | 3.007 (2) | 145 |
Symmetry code: (i) −x, −y+1, −z+1. |
Acknowledgements
JS and RAN thank the management of The Madura College (Autonomous), Madurai, for their encouragement and support. RRK thanks the University Grants Commission, New Delhi, for funds through the Major Research Project F. No. 42–242/2013 (SR).
References
Amr, A. G., Mohamed, A. M., Mohamed, S. F., Abdel-Hafez, N. A. & Hammam, A. G. (2006). Bioorg. Med. Chem. 14, 5481–5488. Web of Science CrossRef PubMed CAS Google Scholar
Boschelli, D. H., Wu, B., Barrios Sosa, A. C., Durutlic, H., Ye, F., Raifeld, Y., Golas, J. M. & Boschelli, F. (2004). J. Med. Chem. 47, 6666–6668. Web of Science CrossRef PubMed CAS Google Scholar
Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Çelik, Í., Akkurt, M., Gezegen, H. & Kazak, C. (2013). Acta Cryst. E69, o956. CSD CrossRef IUCr Journals Google Scholar
Ge, J. & Qian, X. (2011). Acta Cryst. E67, o1481. Web of Science CSD CrossRef IUCr Journals Google Scholar
Jansen, B. A. J., van der Zwan, J., den Dulk, H., Brouwer, J. & Reedijk, J. (2001). J. Med. Chem. 44, 245–249. Web of Science CrossRef PubMed CAS Google Scholar
Murata, T., Shimada, M., Sakakibara, S., Yoshino, T., Kadono, H., Masuda, T., Shimazaki, M., Shintani, T., Fuchikami, K., Sakai, K., Inbe, H., Takeshita, K., Niki, T., Umeda, M., Bacon, K. B., Ziegelbauer, K. B. & Lowinger, T. B. (2003). Bioorg. Med. Chem. Lett. 13, 913–918. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Shinkai, H., Ito, T., Iida, T., Kitao, Y., Yamada, H. & Uchida, I. (2000). J. Med. Chem. 43, 4667–4677. Web of Science CrossRef PubMed CAS Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tomlin, C. (1994). The Pesticide Manual, 10th ed. Cambridge: British Crop Protection Council/Royal Society of Medicine. Google Scholar
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