research communications
H-chromen-2-one
of 3-(2,2-dibromoacetyl)-4-hydroxy-2aUnité de Chimie des Matériaux et de l'Environnement UR11ES25, ISSBAT, Université de Tunis-El Manar, 9, Avenue Dr. Zoheir SAFI, 1006 Tunis, Tunisia
*Correspondence e-mail: rached.benhassen@fss.rnu.tn
The title compound, C11H6Br2O4, is a new coumarin derivative obtained from the reaction of 3-acetyl-4-hydroxy-2H-chromen-2-one with bromine in acetic acid. The hydroxyl group in involved in an intramolecular O—H⋯O hydrogen bond. In the crystal, π–π interactions between the rings of the bicycle [intercentroid distances = 3.498 (2) and 3.539 (2) Å] pack molecules into stacks along the b axis, and weak intermolecular C—H⋯O hydrogen bonds further link these stacks into layers parallel to the ab plane.
Keywords: crystal structure; coumarin derivatives; dibromation; hydrogen bonding; π–π interactions.
CCDC reference: 1040655
1. Chemical context
3-Acetyl-4-hydroxy-2H-chromen-2-one is one of the well-known 3-substituted-4-hydroxycoumarins, which form a class of fused-ring heterocycles and occur widely among natural products. Several natural products with the coumarinic moiety exhibit interesting biological properties such as anti-oxidant and antibacterial (Kayser & Kolodziej, 1997). They also possess pharmacological activities including anti-inflammatory (Mahidol et al., 2004), anticancer (Wang et al., 2002) and inhibition of platelet aggregation (Cravotto et al., 2001). These derivatives are very susceptible to electrophilic substitutions (Dou et al., 1969); their reaction with bromine can give rise to several compounds used as intermediate products which are susceptible to interesting substitutions (Takase et al., 1971) in a wide range of organic syntheses. The bromination of these compounds increases their anticonvulsant activity (Dimmock et al., 2000), which gives them pharmacological importance. Thus, as part of a study of the effects of substituents on the crystal structures of 3-acetyl-4-hydroxycoumarins (Traven et al., 2000), the structure of 3-(2,2-dibromoacetyl)-4-hydroxy-2H-chromen-2-one, (I), has been determined.
2. Structural commentary
In the title compound (Fig. 1), the hydroxy group is involved in formation of an intramolecular O—H⋯O hydrogen bond (Table 1). In fact, the O3—H5 distance of 0.94 (7) Å has decreased from 1.02 (3) Å, observed in the starting reagent 3-acetyl-4-hydroxy-2H-chromen-2-one (Lyssenko & Antipin, 2001). The H5⋯O4 distance of 1.65 (7) Å is elongated compared with its value in the parent compound [1.45 (3) Å], and the O3—H5⋯O4 angle of 147 (6)° is significantly smaller than that found for the starting reagent [161 (2)°]. This trend has already been observed in the fluorinated compound 2-difluoroacetyl-1,3-cyclohexadione (Grieco et al., 2011), in which the O3—H5 and H5⋯O4 distances are even more affected (0.908 and 1.658 Å respectively). These observations can be easily understood from the point of view of the strong attractive effect of the halogen atoms due to their high electronegativities. All these geometrical parameters are in good agreement with the significant attractor effect of the halogen atoms, which affects the lone pairs of the oxygen atom O4, leading to a decrease of the attractor effect of O4 in the H5⋯O4 hydrogen bond and, consequently, an increase in the H5⋯O4 distance.
The C—C and C—O bond lengths in (I) correspond well to those observed in the parent compound, so they are not affected by the α-ketodibromation except for C10—C11 [1.523 (9) Å] which is elongated compared to the distance in the starting reagent [1.485 (2) Å; Lyssenko & Antipin, 2001). This trend had previously been observed in the similar structure of 2-difluoroacetyl-1,3-cyclohexadione (Grieco et al., 2011), in which the difluoration reaction affects the C10—C11 distance [1.529 (2) Å].
3. Supramolecular features
In the , the molecules are assembled in a head-to-tail overlapping manner as a result of the π–π interactions between the benzene and lactone rings of neighbouring molecules (Table 2) into stacks along the b-axis direction (Fig. 2). The observed stacking arrangement can be considered as a balance between van der Waals dispersion and repulsion interactions, and electrostatic interactions between two rings of opposed polarity – the benzene ring (high electron density) and the lactone ring (low electron density) (Hunter & Sanders, 1990). Weak intermolecular C—H⋯O hydrogen bonds (Table 2) further link these stacks into layers parallel to the ab plane (Fig. 3).
of (I)4. Synthesis and crystallization
An excess amount of bromine dissolved in acetic acid was added dropwise to a solution of 3-acetyl-4-hydroxy-2H-chromen-2-one in acetic acid (Fig. 4). During the reaction, the dropwise addition was made after every disappearance of the brown colour of the bromine. The reaction mixture was maintained under stirring at 373 K until the bromine colour persisted. The resulting solution was left to crystallize at room temperature to obtain transparent crystals of a light-yellow colour. Yield: 70%; m.p. = 375 K.
5. Refinement
Crystal data, data collection and structure . The hydroxy atom H5 was located from an electron density difference map and freely refined. C-bound H atoms were fixed geometrically (C—H = 0.93 or 0.98 Å) and refined as riding, with Uiso(H) set to 1.2Ueq of the parent atom.
details are summarized in Table 3
|
Supporting information
CCDC reference: 1040655
10.1107/S2056989014027947/cv5480sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989014027947/cv5480Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989014027947/cv5480Isup3.cml
3-Acetyl-4-hydroxy-2H-chromen-2-one is one of the well-known 3-substituted-4-hydroxycoumarins, which form a class of fused-ring heterocycles and occur widely among natural products. Several natural products with the coumarinic moiety exhibit interesting biological properties such as anti-oxidant and antibacterial (Kayser & Kolodziej, 1997). They possess also pharmacological activities: anti-inflammatory (Mahidol et al., 2004), anticancer (Wang et al., 2002) and inhibition of platelet aggregation (Cravotto et al., 2001). These derivatives are very susceptible to electrophilic substitutions (Dou et al., 1969); their reaction with bromine can give rise to several compounds used as intermediate products susceptible to interesting substitutions (Takase et al., 1971) in a wide range of organic syntheses. The bromination of these compounds increases their anticonvulsant activity (Dimmock et al., 2000), which gives them pharmacological importance. Thus, as part of a study of the effects of substituents on the crystal structures of 3-acetyl-4-hydroxycoumarins (Traven et al., 2000), the structure of 3-(2,2-dibromoacetyl)-4-hydroxy-2H-chromen-2-one, (I), has been determined.
In the title compound (Fig. 1), the hydroxy group is involved in formation of an intramolecular O—H···O hydrogen bond (Table 1). In fact, the O3—H5 distance of 0.94 (7) Å has decreased from 1.02 (3) Å, observed in the starting reagent 3-acetyl-4-hydroxy-2H-chromen-2-one (Lyssenko & Antipin, 2001). The H5···O4 distance of 1.65 (7) Å is elongated compared with its value in the parent compound [1.45 (3) Å], and the O3—H5···O4 angle of 147 (6)° is significantly smaller than that found for the starting reagent [161 (2)°]. This trend has already been observed in the fluorinated compound 2-difluoroacetyl-1,3-cyclohexadione (Grieco et al., 2011), in which the O3—H5 and H5···O4 distances are even more affected (0.908 and 1.658 Å respectively). These observations can be easily understood from the point of view of the strong attractive effect of the halogen atoms due to their high electronegativities. All these geometrical parameters are in good agreement with the significant attractor effect of the halogen atoms, which affects the lone pairs of the oxygen atom O4, leading to a decrease of the attractor effect of O4 in the H5···O4 hydrogen bond and, consequently, an increase in the H5···O4 distance.
The C—C and C—O bond lengths in (I) correspond well to those observed in the parent compound, so they are not affected by the α-ketodibromation except for C10—C11 [1.523 (9) Å] which is elongated as compared to that in the starting reagent [1.485 (2) Å; Lyssenko & Antipin, 2001). This trend had previously been observed in the similar structure of 2-difluoroacetyl-1,3-cyclohexadione (Grieco et al., 2011), in which the difluoration reaction affects the C10—C11 distance [1.529 (2) Å].
In the π–π interactions between the benzene and lactone rings of neighbouring molecules (Table 2) into stacks along the b-axis direction (Fig. 2). The observed stacking arrangement can be considered as a balance between van der Waals dispersion and repulsion interactions, and electrostatic interactions between two rings of opposed polarity – the benzene ring (high electron density) and the lactone ring (low electron density) (Hunter & Sanders, 1990). Weak intermolecular C—H···O hydrogen bonds (Table 2) further link these stacks into layers parallel to the ab plane (Fig. 3).
of (I), the molecules are assembled in a head-to-tail overlapping manner as a result of theAn excess amount of bromine dissolved in acetic acid was added dropwise to a solution of 3-acetyl-4-hydroxy-2H-chromen-2-one in acetic acid (Fig. 4). During the reaction, the drop addition was made after every disappearance of the brown colour of the bromine. The reaction mixture was maintained under stirring at 373 K until the bromine colour persisted. The resulting solution was left to crystallize at room temperature to obtain transparent crystals of a light-yellow colour. Yield: 70%; m.p. = 375 K.
Data collection: SMART (Bruker, 2001); cell
SMART (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).Fig. 1. The molecular structure of (I), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Intramolecular hydrogen bonds are shown as dashed lines. | |
Fig. 2. A portion of the crystal packing showing one stack of molecules parallel to the b axis. | |
Fig. 3. The crystal packing, viewed down the b axis, showing the intermolecular C—H···O hydrogen bonds as thin blue lines. | |
Fig. 4. The synthetic route for (I). |
C11H6Br2O4 | Z = 4 |
Mr = 361.98 | F(000) = 696 |
Monoclinic, P21/n | Dx = 2.076 Mg m−3 |
Hall symbol: -P 2yn | Melting point: 375 K |
a = 9.399 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 6.916 (3) Å | µ = 7.00 mm−1 |
c = 17.967 (7) Å | T = 296 K |
β = 97.37 (3)° | Needle, yellow |
V = 1158.4 (8) Å3 | 0.15 × 0.12 × 0.10 mm |
Bruker SMART CCD area-detector diffractometer | 3234 independent reflections |
Radiation source: fine-focus sealed tube | 1094 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.089 |
ϕ and ω scans | θmax = 30.4°, θmin = 2.3° |
Absorption correction: for a sphere (WinGX; Farrugia, 2012) | h = −10→13 |
Tmin = 0.58, Tmax = 0.75 | k = −6→8 |
11685 measured reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.96 | w = 1/[σ2(Fo2) + (0.0409P)2 + 0.259P] where P = (Fo2 + 2Fc2)/3 |
3234 reflections | (Δ/σ)max < 0.001 |
158 parameters | Δρmax = 0.43 e Å−3 |
0 restraints | Δρmin = −0.48 e Å−3 |
C11H6Br2O4 | V = 1158.4 (8) Å3 |
Mr = 361.98 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.399 (4) Å | µ = 7.00 mm−1 |
b = 6.916 (3) Å | T = 296 K |
c = 17.967 (7) Å | 0.15 × 0.12 × 0.10 mm |
β = 97.37 (3)° |
Bruker SMART CCD area-detector diffractometer | 3234 independent reflections |
Absorption correction: for a sphere (WinGX; Farrugia, 2012) | 1094 reflections with I > 2σ(I) |
Tmin = 0.58, Tmax = 0.75 | Rint = 0.089 |
11685 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | 0 restraints |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.96 | Δρmax = 0.43 e Å−3 |
3234 reflections | Δρmin = −0.48 e Å−3 |
158 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.56249 (8) | 0.89000 (12) | 0.15244 (5) | 0.0906 (3) | |
Br2 | 0.58984 (10) | 0.45607 (13) | 0.21230 (4) | 0.1029 (4) | |
O1 | 0.1772 (4) | 0.7341 (5) | −0.05777 (19) | 0.0525 (10) | |
O2 | 0.4010 (5) | 0.6891 (6) | −0.0136 (2) | 0.0637 (12) | |
O3 | 0.0411 (5) | 0.6852 (6) | 0.1484 (2) | 0.0639 (12) | |
O4 | 0.2923 (5) | 0.6171 (7) | 0.2042 (2) | 0.0782 (14) | |
C1 | −0.1597 (7) | 0.7718 (8) | 0.0249 (3) | 0.0552 (16) | |
H1 | −0.1941 | 0.7656 | 0.0711 | 0.066* | |
C2 | −0.2515 (7) | 0.8099 (8) | −0.0390 (4) | 0.0609 (17) | |
H2 | −0.3490 | 0.8267 | −0.0365 | 0.073* | |
C3 | −0.1981 (8) | 0.8233 (8) | −0.1075 (3) | 0.0590 (17) | |
H3 | −0.2612 | 0.8507 | −0.1504 | 0.071* | |
C4 | −0.0559 (7) | 0.7973 (8) | −0.1138 (3) | 0.0533 (16) | |
H4 | −0.0219 | 0.8061 | −0.1601 | 0.064* | |
C5 | 0.0358 (7) | 0.7576 (7) | −0.0489 (3) | 0.0453 (15) | |
C6 | −0.0123 (6) | 0.7421 (7) | 0.0202 (3) | 0.0426 (14) | |
C7 | 0.0922 (7) | 0.7009 (8) | 0.0839 (3) | 0.0476 (15) | |
C8 | 0.2351 (7) | 0.6807 (8) | 0.0762 (3) | 0.0448 (14) | |
C9 | 0.2804 (8) | 0.7008 (8) | 0.0022 (3) | 0.0489 (15) | |
C10 | 0.3352 (7) | 0.6382 (8) | 0.1427 (3) | 0.0576 (17) | |
C11 | 0.4958 (7) | 0.6271 (9) | 0.1383 (3) | 0.0637 (18) | |
H11 | 0.5117 | 0.5825 | 0.0883 | 0.076* | |
H5 | 0.117 (8) | 0.628 (9) | 0.180 (3) | 0.08 (2)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0551 (5) | 0.1001 (6) | 0.1139 (7) | −0.0050 (4) | 0.0000 (4) | −0.0223 (5) |
Br2 | 0.1112 (8) | 0.1317 (8) | 0.0614 (5) | 0.0584 (6) | −0.0057 (4) | 0.0091 (4) |
O1 | 0.044 (3) | 0.071 (3) | 0.042 (2) | 0.005 (2) | 0.004 (2) | 0.0054 (18) |
O2 | 0.044 (3) | 0.093 (3) | 0.055 (3) | 0.010 (2) | 0.008 (2) | 0.006 (2) |
O3 | 0.061 (3) | 0.088 (3) | 0.044 (3) | 0.006 (3) | 0.012 (2) | −0.003 (2) |
O4 | 0.066 (3) | 0.130 (4) | 0.037 (2) | 0.005 (3) | 0.003 (2) | 0.001 (2) |
C1 | 0.052 (5) | 0.054 (4) | 0.062 (4) | −0.001 (3) | 0.017 (4) | −0.007 (3) |
C2 | 0.048 (4) | 0.054 (4) | 0.078 (5) | 0.003 (3) | −0.005 (4) | −0.002 (3) |
C3 | 0.062 (5) | 0.053 (4) | 0.058 (4) | 0.002 (3) | −0.006 (4) | 0.006 (3) |
C4 | 0.046 (5) | 0.054 (4) | 0.058 (4) | 0.000 (3) | 0.001 (3) | 0.004 (3) |
C5 | 0.045 (4) | 0.035 (4) | 0.055 (4) | 0.001 (3) | 0.003 (3) | 0.004 (3) |
C6 | 0.048 (4) | 0.036 (4) | 0.043 (4) | −0.003 (3) | 0.006 (3) | −0.003 (2) |
C7 | 0.059 (5) | 0.046 (4) | 0.040 (4) | −0.008 (3) | 0.016 (3) | −0.004 (3) |
C8 | 0.050 (4) | 0.054 (4) | 0.031 (3) | 0.001 (3) | 0.007 (3) | 0.000 (3) |
C9 | 0.054 (5) | 0.045 (4) | 0.048 (4) | 0.005 (3) | 0.007 (4) | 0.000 (3) |
C10 | 0.062 (5) | 0.064 (4) | 0.045 (4) | 0.005 (3) | 0.002 (4) | −0.001 (3) |
C11 | 0.058 (5) | 0.086 (5) | 0.044 (4) | 0.011 (4) | −0.006 (3) | −0.004 (3) |
Br1—C11 | 1.930 (6) | C2—H2 | 0.9300 |
Br2—C11 | 1.910 (6) | C3—C4 | 1.368 (8) |
O1—C5 | 1.368 (6) | C3—H3 | 0.9300 |
O1—C9 | 1.374 (6) | C4—C5 | 1.386 (7) |
O2—C9 | 1.206 (7) | C4—H4 | 0.9300 |
O3—C7 | 1.315 (6) | C5—C6 | 1.379 (7) |
O3—H5 | 0.94 (7) | C6—C7 | 1.438 (7) |
O4—C10 | 1.233 (7) | C7—C8 | 1.375 (8) |
C1—C2 | 1.370 (7) | C8—C10 | 1.453 (7) |
C1—C6 | 1.413 (8) | C8—C9 | 1.454 (8) |
C1—H1 | 0.9300 | C10—C11 | 1.523 (9) |
C2—C3 | 1.391 (8) | C11—H11 | 0.9800 |
C5—O1—C9 | 121.8 (5) | C1—C6—C7 | 123.8 (5) |
C7—O3—H5 | 103 (4) | O3—C7—C8 | 123.5 (5) |
C2—C1—C6 | 119.7 (6) | O3—C7—C6 | 115.4 (6) |
C2—C1—H1 | 120.2 | C8—C7—C6 | 121.1 (5) |
C6—C1—H1 | 120.2 | C7—C8—C10 | 118.4 (5) |
C1—C2—C3 | 119.6 (6) | C7—C8—C9 | 119.1 (5) |
C1—C2—H2 | 120.2 | C10—C8—C9 | 122.5 (6) |
C3—C2—H2 | 120.2 | O2—C9—O1 | 114.7 (5) |
C4—C3—C2 | 122.2 (6) | O2—C9—C8 | 127.1 (6) |
C4—C3—H3 | 118.9 | O1—C9—C8 | 118.2 (6) |
C2—C3—H3 | 118.9 | O4—C10—C8 | 120.7 (6) |
C3—C4—C5 | 117.7 (6) | O4—C10—C11 | 118.7 (5) |
C3—C4—H4 | 121.1 | C8—C10—C11 | 120.6 (6) |
C5—C4—H4 | 121.1 | C10—C11—Br2 | 111.6 (4) |
O1—C5—C6 | 122.1 (5) | C10—C11—Br1 | 104.7 (4) |
O1—C5—C4 | 115.7 (5) | Br2—C11—Br1 | 112.2 (3) |
C6—C5—C4 | 122.2 (6) | C10—C11—H11 | 109.4 |
C5—C6—C1 | 118.7 (5) | Br2—C11—H11 | 109.4 |
C5—C6—C7 | 117.5 (6) | Br1—C11—H11 | 109.4 |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H5···O4 | 0.94 (7) | 1.65 (7) | 2.489 (6) | 147 (6) |
C11—H11···O2 | 0.98 | 2.12 | 2.793 (7) | 125 |
C11—H11···O2i | 0.98 | 2.51 | 3.362 (8) | 146 |
C2—H2···O2ii | 0.93 | 2.62 | 3.458 (8) | 151 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x−1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H5···O4 | 0.94 (7) | 1.65 (7) | 2.489 (6) | 147 (6) |
C11—H11···O2 | 0.98 | 2.12 | 2.793 (7) | 125 |
C11—H11···O2i | 0.98 | 2.51 | 3.362 (8) | 146 |
C2—H2···O2ii | 0.93 | 2.62 | 3.458 (8) | 151 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x−1, y, z. |
Cg1 and Cg2 are centroids of the C1–C6 and O1/C5–C9 rings, respectively. |
Cg1···Cg2i | 3.498 (7) |
Cg1···Cg2ii | 3.539 (7) |
Symmetry codes: (i) -x, -y + 2, -z; (ii) -x, -y + 1, -z. |
Experimental details
Crystal data | |
Chemical formula | C11H6Br2O4 |
Mr | 361.98 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 296 |
a, b, c (Å) | 9.399 (4), 6.916 (3), 17.967 (7) |
β (°) | 97.37 (3) |
V (Å3) | 1158.4 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 7.00 |
Crystal size (mm) | 0.15 × 0.12 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | For a sphere (WinGX; Farrugia, 2012) |
Tmin, Tmax | 0.58, 0.75 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11685, 3234, 1094 |
Rint | 0.089 |
(sin θ/λ)max (Å−1) | 0.712 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.133, 0.96 |
No. of reflections | 3234 |
No. of parameters | 158 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.43, −0.48 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), WinGX (Farrugia, 2012).
Acknowledgements
Professor A. Ben Salah is acknowledged for his contribution to the X-ray diffraction data collection at the Laboratory of Materials Science and the Environment, University of Sfax, Tunisia.
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