research communications
of 2-(2-aminophenyl)-1,3-benzoxazole
aÁrea Académica de Química, Universidad Autónoma del Estado de Hidalgo, km. 4.5 Carretera Pachuca-Tulancingo, Mineral de la Reforma, Hidalgo CP 42184, Mexico, and bCentro Conjunto de Investigación en Química Sustentable, UAEM-UNAM, carretera Toluca-Atlacomulco km. 14.5, CP 50200, Toluca, Estado de México, Mexico
*Correspondence e-mail: mei_781@hotmail.com
Crystals of the title compound, C13H10N2O, were grown from a dichloromethane/ketone/methanol solvent mixture. It crystallizes with two molecules, A and B, in the with very similar almost planar conformations [dihedral angles between the ring planes = 0.74 (8) and 0.67 (6)° for molecules A and B, respectively; r.m.s. overlay fit = 0.019 Å]. Each molecule features an intramolecular N—H⋯N hydrogen bond, which closes an S(6) ring and therefore establishes a syn relationship for the N atoms. In the crystal, molecules are linked by N—H⋯N hydrogen bonds, generating [100] chains containing alternating A and B molecules. Weak aromatic π–π stacking [minimum centroid–centroid separation = 3.6212 (9) Å] links the chains into a three-dimensional network.
Keywords: crystal structure; benzoxazole; N—H⋯N hydrogen bonding.
CCDC reference: 1042858
1. Chemical context
Benzimidazole, benzoxazole, and benzothiazole derivatives are key components in many bioactive compounds of both natural and synthetic origin; many are active components of biocides such as bactericides, fungicides, insecticides and anticarcinogens (Kumar-Samota & Seth, 2010). Benzoxazole derivatives have been used as building blocks for biochemical and pharmaceutical agents, as well as dyes, fluorescent brightening agents, biomarkers and biosensors (Costa et al. 2007 and Tong et al. 2005).
In this context, 2-(2-aminophenyl)benzoxazole has shown considerable growth inhibition with respect to fungi and gram-positive and gram-negative bacteria (Elnima et al. 1981). For this reason, several methods have been described for the synthesis of these some of which are summarized in the Scheme, which shows the retrosynthesis for the preparation of the title compound, (I). For example, Gajare et al. (2000) described a procedure for the preparation of 2-(o-aminophenyl)oxazolines from isatoic anhydride and 2-aminoalcohols at reflux of PhCl mediated via a natural kaolinitic clay catalyst; a slightly modified procedure has been describe by Button & Gossage (2003) using zinc chloride as a catalyst. Qiao et al. (2011) described the synthesis of benzoxazole via the reaction of anionically activated trifluoromethyl groups with amino nucleophiles under mild aqueous conditions. Recently, Khalafi-Nezhad & Panahi (2014) reported an efficient approach for the preparation of benzoxazole derivatives, via acceptorless dehydrogenative coupling of with 2-aminophenol using an Ru catalytic system.
In the present work, as part of our ongoing studies of et al., 2011, 2013; de la Cerda-Pedro et al., 2014), we report the synthesis of 2-(2-aminophenyl)benzoxazole, we analyse its molecular structure, as well as its weak intermolecular interactions in molecular packing, which could be useful in the understanding of their mode of action in pharmaceutical science, as well as in the design of materials with specific functions. The title compound has been previously reported by Button & Gossage (2003) from isatoic anhydride and 2-aminophenol but its has not been described.
(López-Ruiz2. Structural commentary
Compound (I) crystallized in the monoclinic P21/c with two independent molecules (A and B) in the (Fig. 1). The orientation of the amino group can be described using as a basis the carbon atom C9, this orientation is syn to the nitrogen atom N3 and anti for the oxygen atom O1.
The skeleton of each molecule is practically planar: to analyse the planarity of the molecule we use the torsion angle N3—C2—C8—C9, indicating the rotation of the aromatic ring C8—C13: these angles are −1.2 (2) and 0.9 (2)° for molecules A and B, respectively. The dihedral angles between the benzene ring and the fused ring system are 0.74 (8) and 0.67 (6)° for molecules A and B, respectively. The two independent molecules are very similar, with an r.m.s. overlay fit of 0.019 Å.
3. Supramolecular features
In the crystal, each NH2 group forms an intramolecular hydrogen bond of the type N2—H2B⋯N3 (Table 1) with an H⋯N distance of 2.094 (18) Å in molecule A and 2.146 (18) Å in molecule B, and an intermolecular N2—H2A⋯N2 hydrogen bond with a distance of 2.289 (15) Å for N2—H2A⋯N2′ and 2.522 (16) Å for N2′—H2A′⋯N2, forming zigzag chains propagating in the [100] direction and containing alternating A and B molecules (Fig. 2). Weak aromatic π–π stacking [minimum centroid–centroid separation = 3.6212 (9) Å] links the chains into a three-dimensional network.
4. Synthesis and crystallization
500 mg (3.00 mmol) of isatoic anhydride were dissolved in 50 mL of m-xylene then 390 mg (3.60 mmol) of o-aminophenol were added followed by the addition of 0.30 ml (10% mol) of a solution of ZnCl2 (1 M). The mixture was then stirred and heated slowly to reflux temperature during 18 h. The crude reaction product was concentrated on a rotary evaporator with an azeotropic mixture of AcOEt/xylene to obtain a reddish brown solid which was dissolved in EtOAc and washed with 10% aq. NaCl solution. The crude reaction product was purified by to give 356 mg (55%) of the amine (I) as a white solid m.p. = 381–382 K (literature value 379–381 K; Button & Gossage, 2003); IR (film) γmax cm−1: 3408 NH2, 3051 C—H(arom), 1624 C=N; (literature value IR: 1620 cm−1; Button & Gossage, 2003); 1H NMR (CDCl3, 400 MHz): δ = 6.20 (br s, 2H, NH2), 6.79 (m, 2H), 7.29 (m, 1H), 7.33 (m, 2H), 757 (m, 1H), 7.72 (m, 1H), 8.09 (dd, J = 1.6 Hz, J = 8.2 Hz, 1H); 13C NMR (CDCl3, 100 MHz) δ = 108.7, 110.4, 116.3, 116.8, 119.4, 124.3, 124.8, 128.8, 132.5, 141.9, 147.9, 149.3, 163.2 [Literature: Button & Gossage (2003); 1H NMR δ = 6.15 (br s, 2H, –NH2), 6.74 (m, 2H, ArH), 7.28 (m, 3H, ArH), 7.51 (m, 1H, ArH), 7.67 (m, 1H, ArH), 8.03 (m, 1H, ArH). 13C{1H} NMR δ = 108.7, 110.3, 116.3, 116.8, 119.4, 124.3, 124.7, 128.8, 132.4, 141.9, 147.9, 149.3, 163.2]. Analysis calculated for C13H10N2O: C, 74.27; H, 4.79%; Found: C, 74.43; H, 5.05%.
The single crystal used in the experiment was obtained by the method of liquid–liquid diffusion by slow evaporation. The pure compound was dissolved in the minimum amount of dichloromethane to be added by the walls of the tube the same amount of acetone followed by methanol. The tube was sealed to leave the solution in a vibration-free environment at room temperature. After a few days, the solution had evaporated, leaving colourless blocks of the title compound.
5. Refinement
Crystal data, data collection and structure . C-bond H atoms were placed in calculated positions and allowed to ride on their carrier atoms, with C—H = 0.93 Å (aromatic CH) and with Uiso(H) = 1.2Ueq(C). Hydrogen atoms of the amine group were found in a difference map and refined freely.
details are summarized in Table 2Supporting information
CCDC reference: 1042858
10.1107/S2056989015000481/hb7320sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015000481/hb7320Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989015000481/hb7320Isup3.cml
Benzimidazole, benzoxazole, and benzothiazole derivatives are key components in many bioactive compounds of both natural and synthetic origin; many are active components of biocides such as bactericides, fungicides, insecticides and anticarcinogens (Kumar-Samota & Seth, 2010). Benzoxazole derivatives have been used as building blocks for biochemical and pharmaceutical agents, as well as dyes, fluorescent brightening agents, biomarkers and biosensors (Costa et al. 2007 and Tong et al. 2005). In this context, 2-(2-aminophenyl)benzoxazole has shown considerable growth inhibition with respect to fungi and gram-positive and gram-negative bacteria (Elnima et al. 1981). For this reason, several methods have been described for the synthesis of these
some of which are summarized in the Scheme, which shows the retrosynthesis for the preparation of the title compound, (I). For example, Gajare et al. (2000) described a procedure for the preparation of 2-(o-aminophenyl)oxazolines from isatoic anhydride and 2-o-aminoalcohols at reflux of PhCl mediated via a natural kaolinitic clay catalyst; a slightly modified procedure has been describe by Button & Gossage (2003) using zinc chloride as a catalyst. Qiao et al. (2011) described the synthesis of benzoxazole via the reaction of anionically activated trifluoromethyl groups with amino nucleophiles under mild aqueous conditions. Recently, Khalafi-Nezhad & Panahi (2014) reported an efficient approach for the preparation of benzoxazole derivatives, via acceptorless dehydrogenative coupling of with 2-aminophenol using an Ru catalytic system.In the present work, as part of our ongoing studies of
(López-Ruiz et al., 2011, 2013; de la Cerda-Pedro et al., 2014), we report the synthesis of 2-(2-aminophenyl)benzoxazole, we analyse its molecular structure, as well as its weak intermolecular interactions in molecular packing, which could be useful in the understanding of their mode of action in pharmaceutical science, as well as in the design of materials with specific functions. The title compound has been previously reported by Button & Gossage (2003) from isatoic anhydride and 2-amino alcohol but its has not been described.Compound (I) crystallized in the monoclinic
P21/c with two independent molecules (A and B) in the (Fig. 1). The orientation of the amino group can be described using as a basis the carbon atom C9, this orientation is syn to the nitrogen atom N3 and anti for the oxygen atom O1.The skeleton of each molecule is practically planar: to analyse the planarity of the molecule we use the torsion angle N3—C2—C8—C9, indicating the rotation of the aromatic ring C8—C13: these angles are -1.2 (2) and 0.9 (2)° for molecules A and B, respectively. The dihedral angles between the benzene ring and the fused ring system are 0.74 (8) and 0.67 (6)° for molecules A and B, respectively. The two independent molecules are very similar with an r.m.s. overlay fit of 0.019 Å.
In the crystal, each NH2 group forms an intramolecular hydrogen bond of the type N2—H2B···N3 (Table 1) with an H···N distance of 2.094 (18) Å in molecule A and 2.146 (18) Å in molecule B, and an intermolecular N2—H2A···N2 hydrogen bond with a distance of 2.289 (15) Å for N2—H2A···N2' and 2.522 (16) Å for N2'—H2A'···N2, forming zigzag chains propagating in the [100] direction (Fig. 2).
500 mg (3.00 mmol) of isatoic anhydride were dissolved in 50 mL of m-xylene then 390 mg (3.60 mmol) of o-aminophenol were added followed by the addition of 0.30 ml (10% mol) of a solution of ZnCl2 (1 M). The mixture was then stirred and heated slowly to reflux temperature during 18 h. The crude reaction product was concentrated on a rotary evaporator with an azeotropic mixture of AcOEt/xylene to obtain a reddish brown solid which was dissolved in EtOAc and washed with 10% aq. NaCl solution. The crude reaction product was purified by γmax cm-1: 3408 NH2, 3051 C—H(arom), 1624 C═N; (literature value IR: 1620 cm-1; Button & Gossage, 2003); 1H NMR (CDCl3, 400 MHz): δ = 6.20 (br s, 2H, NH2), 6.79 (m, 2H), 7.29 (m, 1H), 7.33 (m, 2H), 757 (m, 1H), 7.72 (m, 1H), 8.09 (dd, J = 1.6 Hz, J = 8.2 Hz, 1H); 13C NMR (CDCl3, 100 MHz) δ = 108.7, 110.4, 116.3, 116.8, 119.4, 124.3, 124.8, 128.8, 132.5, 141.9, 147.9, 149.3, 163.2 [Literature: Button & Gossage (2003); 1H NMR δ = 6.15 (br s, 2H, -NH2), 6.74 (m, 2H, ArH), 7.28 (m, 3H, ArH), 7.51 (m, 1H, ArH), 7.67 (m, 1H, ArH), 8.03 (m, 1H, ArH). 13C{1H} NMR δ = 108.7, 110.3, 116.3, 116.8, 119.4, 124.3, 124.7, 128.8, 132.4, 141.9, 147.9, 149.3, 163.2]. Analysis calculated for C13H10N2O: C, 74.27; H, 4.79 %; Found: C, 74.43; H, 5.05%.
to give 356 mg (55 %) of the amine (I) as a white solid m.p. = 381–382 K (literature value 379–381 K; Button & Gossage, 2003); IR (film)The single crystal used in the experiment was obtained by the method of liquid–liquid diffusion by slow evaporation. The pure compound was dissolved in the minimum amount of dichloromethane to be added by the walls of the tube the same amount of acetone followed by methanol. The tube was sealed to leave the solution in a vibration-free environment at room temperature. After a few days, the solution had evaporated, leaving colourless blocks of the title compound.
Crystal data, data collection and structure
details are summarized in Table 2. C-bond H atoms were placed in calculated positions and allowed to ride on their carrier atoms, with C—H = 0.93 Å (aromatic CH) and with Uiso(H) = 1.2Ueq(C). Hydrogen atoms of the amine group were found in a difference map and refined freely.Data collection: CrysAlis PRO (Agilent, 2011); cell
CrysAlis PRO (Agilent, 2011); data reduction: CrysAlis PRO (Agilent, 2011); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).Fig. 1. The asymmetric unit of (I) with displacement ellipsoids drawn at the 50% probability level (left: molecule A and right: molecule B) | |
Fig. 2. Crystal packing for (I), showing the formation of [100] chains. [Symmetry codes: (i) 2 - x, -1/2 + y, 1/2 - z; (ii) 1 - x, -1/2 + y, 1/2 - z; (iii) -x, -1/2 + y, 1/2 - z; (iv) 1 + x, y, z; (v) x, y, z; (vi) 1 - x, 1 - y, 1 - z; (vii) -x, 1 - y, 1 - z; (viii) 1 + x, 3/2 - y, 1/2 + z; (ix) x, 3/2 - y, 1/2 + z; (x) -1 + x, 3/2 - y, 1/2 + z.] |
C13H10N2O | Dx = 1.328 Mg m−3 |
Mr = 210.23 | Melting point: 381 K |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 4.81703 (10) Å | Cell parameters from 7503 reflections |
b = 14.8104 (3) Å | θ = 3.0–74.3° |
c = 29.4801 (6) Å | µ = 0.69 mm−1 |
β = 91.3715 (18)° | T = 293 K |
V = 2102.57 (7) Å3 | Block, colourless |
Z = 8 | 0.38 × 0.14 × 0.11 mm |
F(000) = 880 |
Agilent Xcalibur Atlas Gemini diffractometer | 4278 independent reflections |
Radiation source: Enhance (Cu) X-ray Source | 3621 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
Detector resolution: 10.3659 pixels mm-1 | θmax = 74.5°, θmin = 3.0° |
ω scans | h = −6→4 |
Absorption correction: analytical [CrysAlis PRO (Agilent, 2011), based on expressions derived by Clark & Reid (1995)] | k = −18→18 |
Tmin = 0.742, Tmax = 0.887 | l = −36→36 |
21894 measured reflections |
Refinement on F2 | 4 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.043 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.121 | w = 1/[σ2(Fo2) + (0.0602P)2 + 0.2656P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max < 0.001 |
4278 reflections | Δρmax = 0.14 e Å−3 |
301 parameters | Δρmin = −0.16 e Å−3 |
C13H10N2O | V = 2102.57 (7) Å3 |
Mr = 210.23 | Z = 8 |
Monoclinic, P21/c | Cu Kα radiation |
a = 4.81703 (10) Å | µ = 0.69 mm−1 |
b = 14.8104 (3) Å | T = 293 K |
c = 29.4801 (6) Å | 0.38 × 0.14 × 0.11 mm |
β = 91.3715 (18)° |
Agilent Xcalibur Atlas Gemini diffractometer | 4278 independent reflections |
Absorption correction: analytical [CrysAlis PRO (Agilent, 2011), based on expressions derived by Clark & Reid (1995)] | 3621 reflections with I > 2σ(I) |
Tmin = 0.742, Tmax = 0.887 | Rint = 0.032 |
21894 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 4 restraints |
wR(F2) = 0.121 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.14 e Å−3 |
4278 reflections | Δρmin = −0.16 e Å−3 |
301 parameters |
Experimental. Absorption correction: CrysAlisPro, Agilent Technologies, Version 1.171.35.15 (release 03-08-2011 CrysAlis171 .NET) (compiled Aug 3 2011,13:03:54) Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by R.C. Clark & J.S. Reid. (Clark, R. C. & Reid, J. S. (1995). Acta Cryst. A51, 887-897) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.0170 (2) | 0.92286 (7) | 0.34568 (3) | 0.0625 (3) | |
O1' | 0.6575 (2) | 0.30487 (7) | 0.46343 (3) | 0.0605 (3) | |
N2 | 0.4198 (3) | 0.85716 (10) | 0.22601 (4) | 0.0678 (3) | |
H2A | 0.559 (4) | 0.8439 (13) | 0.2065 (6) | 0.081* | |
H2B | 0.337 (4) | 0.8108 (11) | 0.2413 (6) | 0.081* | |
N2' | 0.1130 (3) | 0.31854 (11) | 0.34698 (5) | 0.0703 (4) | |
H2'A | −0.034 (4) | 0.3172 (13) | 0.3298 (6) | 0.084* | |
H2'B | 0.180 (4) | 0.2642 (11) | 0.3545 (7) | 0.084* | |
N3 | 0.0403 (2) | 0.81678 (8) | 0.29206 (4) | 0.0575 (3) | |
N3' | 0.5227 (3) | 0.23223 (8) | 0.39963 (4) | 0.0576 (3) | |
C2 | 0.1126 (3) | 0.89555 (9) | 0.30691 (4) | 0.0532 (3) | |
C2' | 0.4906 (3) | 0.30246 (9) | 0.42478 (4) | 0.0533 (3) | |
C4 | −0.3081 (3) | 0.70682 (12) | 0.32430 (7) | 0.0735 (4) | |
H4 | −0.2870 | 0.6619 | 0.3026 | 0.088* | |
C4' | 0.8489 (4) | 0.09914 (11) | 0.41168 (6) | 0.0683 (4) | |
H4' | 0.7961 | 0.0673 | 0.3857 | 0.082* | |
C5 | −0.4916 (4) | 0.69714 (13) | 0.35908 (7) | 0.0804 (5) | |
H5 | −0.5976 | 0.6448 | 0.3607 | 0.096* | |
C3A | −0.1563 (3) | 0.78613 (10) | 0.32287 (5) | 0.0587 (3) | |
C3A' | 0.7278 (3) | 0.18126 (10) | 0.42227 (5) | 0.0567 (3) | |
C5' | 1.0510 (4) | 0.06674 (12) | 0.44134 (6) | 0.0752 (5) | |
H5' | 1.1357 | 0.0118 | 0.4352 | 0.090* | |
C6 | −0.5220 (4) | 0.76345 (16) | 0.39167 (7) | 0.0864 (6) | |
H6 | −0.6470 | 0.7543 | 0.4148 | 0.104* | |
C6' | 1.1316 (4) | 0.11380 (13) | 0.48016 (6) | 0.0763 (5) | |
H6' | 1.2695 | 0.0899 | 0.4992 | 0.092* | |
C7 | −0.3698 (4) | 0.84388 (14) | 0.39075 (6) | 0.0785 (5) | |
H7 | −0.3887 | 0.8890 | 0.4124 | 0.094* | |
C7' | 1.0110 (4) | 0.19587 (12) | 0.49121 (5) | 0.0708 (4) | |
H7' | 1.0631 | 0.2279 | 0.5172 | 0.085* | |
C8 | 0.3115 (3) | 0.95868 (9) | 0.28832 (4) | 0.0536 (3) | |
C7A | −0.1899 (3) | 0.85106 (11) | 0.35532 (5) | 0.0607 (3) | |
C7A' | 0.8096 (3) | 0.22647 (10) | 0.46119 (5) | 0.0574 (3) | |
C8' | 0.3042 (3) | 0.37874 (10) | 0.41810 (5) | 0.0564 (3) | |
C9 | 0.4607 (3) | 0.93665 (10) | 0.24915 (4) | 0.0553 (3) | |
C9' | 0.1199 (3) | 0.38352 (11) | 0.38020 (5) | 0.0590 (3) | |
C10 | 0.6493 (3) | 1.00084 (11) | 0.23331 (5) | 0.0670 (4) | |
H10 | 0.7479 | 0.9883 | 0.2073 | 0.080* | |
C10' | −0.0505 (4) | 0.46002 (13) | 0.37630 (6) | 0.0734 (4) | |
H10' | −0.1725 | 0.4652 | 0.3515 | 0.088* | |
C11 | 0.6923 (4) | 1.08145 (12) | 0.25509 (6) | 0.0734 (4) | |
H11 | 0.8203 | 1.1223 | 0.2439 | 0.088* | |
C11' | −0.0415 (4) | 0.52712 (13) | 0.40806 (7) | 0.0805 (5) | |
H11' | −0.1578 | 0.5769 | 0.4046 | 0.097* | |
C12 | 0.5471 (4) | 1.10261 (11) | 0.29352 (6) | 0.0722 (4) | |
H12 | 0.5765 | 1.1575 | 0.3082 | 0.087* | |
C12' | 0.1369 (4) | 0.52214 (13) | 0.44503 (7) | 0.0815 (5) | |
H12' | 0.1420 | 0.5681 | 0.4665 | 0.098* | |
C13 | 0.3603 (3) | 1.04212 (10) | 0.30963 (5) | 0.0634 (4) | |
H13 | 0.2624 | 1.0565 | 0.3355 | 0.076* | |
C13' | 0.3072 (4) | 0.44845 (11) | 0.44974 (6) | 0.0709 (4) | |
H13' | 0.4280 | 0.4449 | 0.4748 | 0.085* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0665 (6) | 0.0656 (6) | 0.0558 (5) | 0.0094 (5) | 0.0078 (4) | −0.0016 (4) |
O1' | 0.0618 (6) | 0.0648 (6) | 0.0549 (5) | 0.0045 (5) | −0.0013 (4) | −0.0050 (4) |
N2 | 0.0683 (8) | 0.0784 (8) | 0.0571 (7) | 0.0071 (7) | 0.0072 (6) | −0.0083 (6) |
N2' | 0.0623 (8) | 0.0896 (9) | 0.0586 (7) | −0.0043 (7) | −0.0046 (6) | 0.0023 (7) |
N3 | 0.0519 (7) | 0.0619 (6) | 0.0587 (6) | 0.0081 (5) | −0.0023 (5) | −0.0015 (5) |
N3' | 0.0572 (7) | 0.0621 (6) | 0.0535 (6) | −0.0006 (5) | 0.0038 (5) | −0.0030 (5) |
C2 | 0.0505 (7) | 0.0584 (7) | 0.0504 (6) | 0.0132 (6) | −0.0028 (5) | 0.0011 (5) |
C2' | 0.0502 (7) | 0.0615 (7) | 0.0485 (6) | −0.0033 (6) | 0.0054 (5) | 0.0013 (5) |
C4 | 0.0572 (9) | 0.0744 (10) | 0.0885 (11) | −0.0002 (7) | −0.0072 (8) | 0.0117 (8) |
C4' | 0.0738 (10) | 0.0631 (8) | 0.0686 (9) | 0.0043 (7) | 0.0107 (8) | −0.0016 (7) |
C5 | 0.0558 (9) | 0.0857 (11) | 0.0994 (13) | −0.0001 (8) | −0.0036 (9) | 0.0281 (10) |
C3A | 0.0468 (7) | 0.0663 (8) | 0.0627 (8) | 0.0096 (6) | −0.0060 (6) | 0.0087 (6) |
C3A' | 0.0555 (8) | 0.0593 (7) | 0.0558 (7) | −0.0024 (6) | 0.0100 (6) | 0.0028 (6) |
C5' | 0.0793 (11) | 0.0663 (9) | 0.0807 (11) | 0.0137 (8) | 0.0157 (9) | 0.0109 (8) |
C6 | 0.0597 (10) | 0.1152 (15) | 0.0846 (12) | 0.0099 (10) | 0.0102 (8) | 0.0386 (11) |
C6' | 0.0704 (10) | 0.0836 (11) | 0.0749 (10) | 0.0141 (8) | 0.0036 (8) | 0.0226 (9) |
C7 | 0.0724 (11) | 0.0958 (12) | 0.0676 (9) | 0.0158 (9) | 0.0120 (8) | 0.0119 (9) |
C7' | 0.0714 (10) | 0.0821 (10) | 0.0587 (8) | 0.0035 (8) | −0.0009 (7) | 0.0056 (7) |
C8 | 0.0497 (7) | 0.0589 (7) | 0.0519 (7) | 0.0097 (6) | −0.0045 (5) | 0.0056 (5) |
C7A | 0.0516 (8) | 0.0693 (8) | 0.0612 (8) | 0.0105 (6) | −0.0002 (6) | 0.0123 (6) |
C7A' | 0.0553 (8) | 0.0608 (8) | 0.0565 (7) | 0.0016 (6) | 0.0068 (6) | 0.0046 (6) |
C8' | 0.0516 (8) | 0.0620 (7) | 0.0560 (7) | 0.0003 (6) | 0.0084 (6) | 0.0041 (6) |
C9 | 0.0508 (8) | 0.0651 (7) | 0.0498 (6) | 0.0117 (6) | −0.0053 (5) | 0.0033 (6) |
C9' | 0.0491 (8) | 0.0746 (9) | 0.0538 (7) | −0.0041 (6) | 0.0107 (6) | 0.0103 (6) |
C10 | 0.0612 (9) | 0.0797 (10) | 0.0603 (8) | 0.0094 (8) | 0.0057 (7) | 0.0103 (7) |
C10' | 0.0582 (9) | 0.0937 (12) | 0.0684 (9) | 0.0094 (8) | 0.0059 (7) | 0.0210 (8) |
C11 | 0.0681 (10) | 0.0721 (9) | 0.0799 (10) | −0.0009 (8) | 0.0014 (8) | 0.0171 (8) |
C11' | 0.0741 (11) | 0.0815 (11) | 0.0865 (12) | 0.0231 (9) | 0.0164 (9) | 0.0173 (9) |
C12 | 0.0804 (11) | 0.0594 (8) | 0.0765 (10) | −0.0002 (8) | −0.0034 (8) | 0.0037 (7) |
C12' | 0.0881 (13) | 0.0732 (10) | 0.0835 (11) | 0.0182 (9) | 0.0080 (9) | −0.0049 (9) |
C13 | 0.0676 (9) | 0.0636 (8) | 0.0592 (8) | 0.0094 (7) | 0.0039 (7) | 0.0005 (6) |
C13' | 0.0731 (11) | 0.0717 (9) | 0.0677 (9) | 0.0098 (8) | −0.0004 (8) | −0.0062 (7) |
O1—C2 | 1.3763 (16) | C6—H6 | 0.9300 |
O1—C7A | 1.3842 (19) | C6—C7 | 1.399 (3) |
O1'—C2' | 1.3791 (16) | C6'—H6' | 0.9300 |
O1'—C7A' | 1.3756 (17) | C6'—C7' | 1.389 (2) |
N2—H2A | 0.916 (15) | C7—H7 | 0.9300 |
N2—H2B | 0.919 (14) | C7—C7A | 1.377 (2) |
N2—C9 | 1.372 (2) | C7'—H7' | 0.9300 |
N2'—H2'A | 0.861 (15) | C7'—C7A' | 1.374 (2) |
N2'—H2'B | 0.894 (14) | C8—C9 | 1.4129 (19) |
N2'—C9' | 1.373 (2) | C8—C13 | 1.404 (2) |
N3—C2 | 1.2910 (18) | C8'—C9' | 1.412 (2) |
N3—C3A | 1.4033 (19) | C8'—C13' | 1.391 (2) |
N3'—C2' | 1.2889 (18) | C9—C10 | 1.403 (2) |
N3'—C3A' | 1.4001 (19) | C9'—C10' | 1.402 (2) |
C2—C8 | 1.455 (2) | C10—H10 | 0.9300 |
C2'—C8' | 1.454 (2) | C10—C11 | 1.369 (3) |
C4—H4 | 0.9300 | C10'—H10' | 0.9300 |
C4—C5 | 1.377 (3) | C10'—C11' | 1.365 (3) |
C4—C3A | 1.385 (2) | C11—H11 | 0.9300 |
C4'—H4' | 0.9300 | C11—C12 | 1.382 (3) |
C4'—C3A' | 1.388 (2) | C11'—H11' | 0.9300 |
C4'—C5' | 1.379 (2) | C11'—C12' | 1.374 (3) |
C5—H5 | 0.9300 | C12—H12 | 0.9300 |
C5—C6 | 1.384 (3) | C12—C13 | 1.363 (2) |
C3A—C7A | 1.369 (2) | C12'—H12' | 0.9300 |
C3A'—C7A' | 1.378 (2) | C12'—C13' | 1.370 (2) |
C5'—H5' | 0.9300 | C13—H13 | 0.9300 |
C5'—C6' | 1.387 (3) | C13'—H13' | 0.9300 |
C2—O1—C7A | 103.41 (11) | C7A'—C7'—C6' | 115.48 (16) |
C7A'—O1'—C2' | 103.83 (11) | C7A'—C7'—H7' | 122.3 |
H2A—N2—H2B | 118.9 (17) | C9—C8—C2 | 120.78 (13) |
C9—N2—H2A | 113.5 (12) | C13—C8—C2 | 120.11 (13) |
C9—N2—H2B | 117.1 (12) | C13—C8—C9 | 119.10 (14) |
H2'A—N2'—H2'B | 114.5 (19) | C3A—C7A—O1 | 108.32 (13) |
C9'—N2'—H2'A | 116.2 (14) | C3A—C7A—C7 | 124.26 (17) |
C9'—N2'—H2'B | 116.8 (13) | C7—C7A—O1 | 127.41 (16) |
C2—N3—C3A | 104.68 (12) | O1'—C7A'—C3A' | 107.95 (13) |
C2'—N3'—C3A' | 104.70 (12) | C7'—C7A'—O1' | 128.04 (14) |
O1—C2—C8 | 116.10 (12) | C7'—C7A'—C3A' | 124.01 (15) |
N3—C2—O1 | 115.04 (13) | C9'—C8'—C2' | 121.39 (13) |
N3—C2—C8 | 128.86 (13) | C13'—C8'—C2' | 119.30 (14) |
O1'—C2'—C8' | 115.96 (12) | C13'—C8'—C9' | 119.31 (14) |
N3'—C2'—O1' | 114.88 (12) | N2—C9—C8 | 122.32 (14) |
N3'—C2'—C8' | 129.16 (13) | N2—C9—C10 | 120.15 (14) |
C5—C4—H4 | 121.3 | C10—C9—C8 | 117.49 (14) |
C5—C4—C3A | 117.38 (18) | N2'—C9'—C8' | 122.22 (14) |
C3A—C4—H4 | 121.3 | N2'—C9'—C10' | 120.26 (15) |
C3A'—C4'—H4' | 121.4 | C10'—C9'—C8' | 117.45 (15) |
C5'—C4'—H4' | 121.4 | C9—C10—H10 | 119.1 |
C5'—C4'—C3A' | 117.16 (16) | C11—C10—C9 | 121.80 (15) |
C4—C5—H5 | 119.2 | C11—C10—H10 | 119.1 |
C4—C5—C6 | 121.56 (18) | C9'—C10'—H10' | 119.2 |
C6—C5—H5 | 119.2 | C11'—C10'—C9' | 121.53 (16) |
C4—C3A—N3 | 131.24 (15) | C11'—C10'—H10' | 119.2 |
C7A—C3A—N3 | 108.55 (13) | C10—C11—H11 | 119.7 |
C7A—C3A—C4 | 120.21 (15) | C10—C11—C12 | 120.57 (16) |
C4'—C3A'—N3' | 131.37 (14) | C12—C11—H11 | 119.7 |
C7A'—C3A'—N3' | 108.64 (13) | C10'—C11'—H11' | 119.5 |
C7A'—C3A'—C4' | 120.00 (15) | C10'—C11'—C12' | 120.94 (17) |
C4'—C5'—H5' | 119.1 | C12'—C11'—H11' | 119.5 |
C4'—C5'—C6' | 121.84 (16) | C11—C12—H12 | 120.4 |
C6'—C5'—H5' | 119.1 | C13—C12—C11 | 119.20 (16) |
C5—C6—H6 | 119.1 | C13—C12—H12 | 120.4 |
C5—C6—C7 | 121.76 (17) | C11'—C12'—H12' | 120.5 |
C7—C6—H6 | 119.1 | C13'—C12'—C11' | 118.99 (18) |
C5'—C6'—H6' | 119.2 | C13'—C12'—H12' | 120.5 |
C5'—C6'—C7' | 121.52 (16) | C8—C13—H13 | 119.1 |
C7'—C6'—H6' | 119.2 | C12—C13—C8 | 121.83 (15) |
C6—C7—H7 | 122.6 | C12—C13—H13 | 119.1 |
C7A—C7—C6 | 114.83 (18) | C8'—C13'—H13' | 119.1 |
C7A—C7—H7 | 122.6 | C12'—C13'—C8' | 121.77 (17) |
C6'—C7'—H7' | 122.3 | C12'—C13'—H13' | 119.1 |
O1—C2—C8—C9 | 178.67 (11) | C5—C4—C3A—N3 | −178.83 (15) |
O1—C2—C8—C13 | −0.43 (18) | C5—C4—C3A—C7A | 0.4 (2) |
O1'—C2'—C8'—C9' | −179.01 (12) | C5—C6—C7—C7A | −0.2 (3) |
O1'—C2'—C8'—C13' | 0.9 (2) | C3A—N3—C2—O1 | 0.01 (15) |
N2—C9—C10—C11 | 178.96 (15) | C3A—N3—C2—C8 | 179.91 (13) |
N2'—C9'—C10'—C11' | −177.83 (16) | C3A—C4—C5—C6 | −0.6 (3) |
N3—C2—C8—C9 | −1.2 (2) | C3A'—N3'—C2'—O1' | 0.00 (16) |
N3—C2—C8—C13 | 179.67 (14) | C3A'—N3'—C2'—C8' | −179.94 (13) |
N3—C3A—C7A—O1 | −0.04 (15) | C3A'—C4'—C5'—C6' | −0.1 (3) |
N3—C3A—C7A—C7 | 179.31 (14) | C5'—C4'—C3A'—N3' | 179.39 (15) |
N3'—C2'—C8'—C9' | 0.9 (2) | C5'—C4'—C3A'—C7A' | −0.4 (2) |
N3'—C2'—C8'—C13' | −179.17 (15) | C5'—C6'—C7'—C7A' | −0.1 (3) |
N3'—C3A'—C7A'—O1' | 0.35 (16) | C6—C7—C7A—O1 | 179.19 (14) |
N3'—C3A'—C7A'—C7' | −179.14 (14) | C6—C7—C7A—C3A | 0.0 (2) |
C2—O1—C7A—C3A | 0.05 (14) | C6'—C7'—C7A'—O1' | −179.79 (15) |
C2—O1—C7A—C7 | −179.29 (15) | C6'—C7'—C7A'—C3A' | −0.4 (2) |
C2—N3—C3A—C4 | 179.31 (15) | C8—C9—C10—C11 | 1.0 (2) |
C2—N3—C3A—C7A | 0.02 (15) | C7A—O1—C2—N3 | −0.03 (15) |
C2—C8—C9—N2 | 2.2 (2) | C7A—O1—C2—C8 | −179.95 (11) |
C2—C8—C9—C10 | −179.83 (12) | C7A'—O1'—C2'—N3' | 0.21 (15) |
C2—C8—C13—C12 | 179.28 (14) | C7A'—O1'—C2'—C8' | −179.85 (12) |
C2'—O1'—C7A'—C3A' | −0.33 (14) | C8'—C9'—C10'—C11' | −0.6 (2) |
C2'—O1'—C7A'—C7' | 179.14 (15) | C9—C8—C13—C12 | 0.2 (2) |
C2'—N3'—C3A'—C4' | 179.99 (15) | C9—C10—C11—C12 | −0.7 (3) |
C2'—N3'—C3A'—C7A' | −0.21 (16) | C9'—C8'—C13'—C12' | −0.4 (3) |
C2'—C8'—C9'—N2' | −2.3 (2) | C9'—C10'—C11'—C12' | 0.3 (3) |
C2'—C8'—C9'—C10' | −179.43 (13) | C10—C11—C12—C13 | 0.1 (3) |
C2'—C8'—C13'—C12' | 179.70 (16) | C10'—C11'—C12'—C13' | 0.0 (3) |
C4—C5—C6—C7 | 0.5 (3) | C11—C12—C13—C8 | 0.2 (3) |
C4—C3A—C7A—O1 | −179.43 (13) | C11'—C12'—C13'—C8' | 0.1 (3) |
C4—C3A—C7A—C7 | −0.1 (2) | C13—C8—C9—N2 | −178.64 (13) |
C4'—C3A'—C7A'—O1' | −179.83 (13) | C13—C8—C9—C10 | −0.72 (19) |
C4'—C3A'—C7A'—C7' | 0.7 (2) | C13'—C8'—C9'—N2' | 177.80 (15) |
C4'—C5'—C6'—C7' | 0.4 (3) | C13'—C8'—C9'—C10' | 0.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···N2′i | 0.92 (2) | 2.29 (2) | 3.202 (2) | 175 (2) |
N2—H2B···N3 | 0.92 (1) | 2.09 (2) | 2.7679 (19) | 129 (2) |
N2′—H2′A···N2ii | 0.86 (2) | 2.52 (2) | 3.359 (2) | 164 (2) |
N2′—H2′B···N3′ | 0.89 (1) | 2.15 (2) | 2.7913 (19) | 129 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x, y−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···N2'i | 0.916 (15) | 2.289 (15) | 3.202 (2) | 175.0 (17) |
N2—H2B···N3 | 0.919 (14) | 2.094 (18) | 2.7679 (19) | 129.2 (16) |
N2'—H2'A···N2ii | 0.861 (15) | 2.522 (16) | 3.359 (2) | 164.0 (18) |
N2'—H2'B···N3' | 0.894 (14) | 2.146 (18) | 2.7913 (19) | 128.5 (17) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H10N2O |
Mr | 210.23 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 4.81703 (10), 14.8104 (3), 29.4801 (6) |
β (°) | 91.3715 (18) |
V (Å3) | 2102.57 (7) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 0.69 |
Crystal size (mm) | 0.38 × 0.14 × 0.11 |
Data collection | |
Diffractometer | Agilent Xcalibur Atlas Gemini diffractometer |
Absorption correction | Analytical [CrysAlis PRO (Agilent, 2011), based on expressions derived by Clark & Reid (1995)] |
Tmin, Tmax | 0.742, 0.887 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21894, 4278, 3621 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.121, 1.02 |
No. of reflections | 4278 |
No. of parameters | 301 |
No. of restraints | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.14, −0.16 |
Computer programs: CrysAlis PRO (Agilent, 2011), SHELXS97 (Sheldrick, 2008), SHELXL2013 (Sheldrick, 2015), OLEX2 (Dolomanov et al., 2009).
Acknowledgements
We gratefully acknowledge financial support from CONACyT (CB-2012–01-182415, CB-2009–135172). IPP is also grateful to CONACyT for a scholarship (grant 206301) to support her studies.
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