organic compounds
S)-9-methoxy-2-methyl-4-oxo-3,4,5,6-tetrahydro-2H- 2,6-methanobenzo[g][1,3,5]oxadiazocine-11-carboxylate
of ethyl (2aPost Graduate and Research Department of Chemistry, Government Arts College, C-Mutlur, Chidambaram 608 102, Tamil Nadu, India, bCentre for Research & Development, PRIST University, Vallam, Thanjavur 613 403, Tamil Nadu, India, and cDepartment of Physics & Nano Technology, SRM University, SRM Nagar, Kattankulathur, Kancheepuram Dist, Chennai 603 203, Tamil Nadu, India
*Correspondence e-mail: phdguna@gmail.com
In the title compound, C15H18N2O5, the methoxyphenyl ring makes a dihedral angle of 84.70 (12)° with the mean plane of the tetrahydropyrimidin-2(1H)-one ring. Both the pyran and tetrahydropyrimidin-2(1H)-one rings have distorted envelope conformations with the carboxylate-substituted C atom as the flap. In the crystal, molecules are linked via pairs of N—H⋯O hydrogen bonds, forming zigzag chains propagating along [010], which enclose R22(8) ring motifs. The chains are linked by C—H⋯π interactions, forming a two-dimensional network parallel to (100).
Keywords: crystal structure; hydropyrimidine; oxadiazocine; pyran; hydrogen bonding.
CCDC reference: 1043105
1. Related literature
For the biological activity of dihydropyrimidine derivatives, see: Hurst & Hull (1961); Ashok et al. (2007); Bahekar & Shinde (2004); Mayer et al. (1999); Kappe (2000); For the crystal structures of two very similar compounds, see: Jing et al. (2009); Yar et al. (2014; Liu et al. (2014).
2. Experimental
2.1. Crystal data
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008, 2015); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
CCDC reference: 1043105
10.1107/S2056989015000559/su5057sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015000559/su5057Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989015000559/su5057Isup3.cml
2-hydroxy-4-methoxybenzaldehyde (0.76 g, 5 mmol) and urea (0.9 g, 15 mmol) were added to an ethanolic solution of ethyl acetoacetate (0.65 ml, 5 mmol). To this mixture CeCl3.7H2O (0.465 g, 25%) was added slowly with stirring. After the addition was complete the reaction mixture was reflux at 363 K. The reaction mixture was then cooled to room temperature, then poured onto crushed ice water and stirred for 10 min. The solid that separated was filtered under suction, washed with water, and then recrystallized from DMSO giving colourless block-like crystals (yield: 96%; m.p.: 463 K).
H atoms were positioned geometrically and refined using a riding model: N-H = 0.86 Å, C—H = 0.93 - 98 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(N,C) for other H atoms.
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008, 2015); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008, 2015).Fig. 1. The molecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. The crystal packing of the title compound, viewed along the b axis. Hydrogen bonds are shown as dashed lines (see Table 1 for details). |
C15H18N2O5 | F(000) = 324 |
Mr = 306.31 | Dx = 1.389 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 3030 reflections |
a = 9.6982 (14) Å | θ = 2.0–26.8° |
b = 7.4802 (12) Å | µ = 0.11 mm−1 |
c = 10.8293 (17) Å | T = 295 K |
β = 111.252 (5)° | Block, colourless |
V = 732.2 (2) Å3 | 0.25 × 0.20 × 0.20 mm |
Z = 2 |
Bruker APEXII CCD diffractometer | 3030 independent reflections |
Radiation source: fine-focus sealed tube | 2029 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.053 |
Detector resolution: 0 pixels mm-1 | θmax = 26.9°, θmin = 2.0° |
ω and ϕ scans | h = −11→12 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −9→9 |
Tmin = 0.954, Tmax = 0.975 | l = −13→13 |
10886 measured reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.071 | w = 1/[σ2(Fo2) + (0.0537P)2 + 0.7506P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.175 | (Δ/σ)max < 0.001 |
S = 1.14 | Δρmax = 0.26 e Å−3 |
3030 reflections | Δρmin = −0.25 e Å−3 |
203 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008) |
1 restraint | Extinction coefficient: 0.031 (8) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1371 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.01 (4) |
C15H18N2O5 | V = 732.2 (2) Å3 |
Mr = 306.31 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 9.6982 (14) Å | µ = 0.11 mm−1 |
b = 7.4802 (12) Å | T = 295 K |
c = 10.8293 (17) Å | 0.25 × 0.20 × 0.20 mm |
β = 111.252 (5)° |
Bruker APEXII CCD diffractometer | 3030 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2029 reflections with I > 2σ(I) |
Tmin = 0.954, Tmax = 0.975 | Rint = 0.053 |
10886 measured reflections |
R[F2 > 2σ(F2)] = 0.071 | H-atom parameters constrained |
wR(F2) = 0.175 | Δρmax = 0.26 e Å−3 |
S = 1.14 | Δρmin = −0.25 e Å−3 |
3030 reflections | Absolute structure: Flack (1983), 1371 Friedel pairs |
203 parameters | Absolute structure parameter: 0.01 (4) |
1 restraint |
x | y | z | Uiso*/Ueq | ||
C1 | 0.9053 (5) | 0.2379 (7) | 0.5750 (5) | 0.0437 (13) | |
C2 | 0.8132 (5) | 0.0956 (7) | 0.5239 (5) | 0.0412 (12) | |
H2 | 0.8430 | −0.0198 | 0.5535 | 0.049* | |
C3 | 0.6753 (5) | 0.1257 (6) | 0.4278 (4) | 0.0325 (10) | |
C4 | 0.6293 (5) | 0.2978 (6) | 0.3837 (4) | 0.0309 (10) | |
C5 | 0.7245 (6) | 0.4362 (6) | 0.4375 (5) | 0.0375 (11) | |
H5 | 0.6948 | 0.5519 | 0.4085 | 0.045* | |
C6 | 0.8629 (6) | 0.4105 (7) | 0.5331 (5) | 0.0455 (13) | |
H6 | 0.9257 | 0.5066 | 0.5682 | 0.055* | |
C7 | 0.4765 (5) | 0.3254 (6) | 0.2807 (4) | 0.0299 (10) | |
H7 | 0.4353 | 0.4379 | 0.2984 | 0.036* | |
C8 | 0.4926 (4) | 0.1772 (6) | 0.0871 (4) | 0.0302 (9) | |
C9 | 0.4544 (5) | 0.0033 (6) | 0.2670 (4) | 0.0295 (10) | |
C10 | 0.3772 (4) | 0.1706 (6) | 0.2878 (4) | 0.0308 (9) | |
H10 | 0.3722 | 0.1671 | 0.3765 | 0.037* | |
C11 | 0.2243 (5) | 0.2001 (7) | 0.1873 (5) | 0.0412 (11) | |
C12 | 0.0178 (7) | 0.3958 (9) | 0.1308 (6) | 0.0700 (19) | |
H12A | 0.0121 | 0.3701 | 0.0413 | 0.084* | |
H12B | 0.0123 | 0.5244 | 0.1396 | 0.084* | |
C13 | −0.1071 (7) | 0.3110 (11) | 0.1540 (7) | 0.088 (2) | |
H13A | −0.1119 | 0.1870 | 0.1299 | 0.132* | |
H13B | −0.1974 | 0.3693 | 0.1011 | 0.132* | |
H13C | −0.0937 | 0.3212 | 0.2460 | 0.132* | |
C14 | 0.3703 (5) | −0.1689 (6) | 0.2594 (5) | 0.0398 (12) | |
H14A | 0.2826 | −0.1685 | 0.1810 | 0.060* | |
H14B | 0.3432 | −0.1792 | 0.3361 | 0.060* | |
H14C | 0.4316 | −0.2683 | 0.2564 | 0.060* | |
C15 | 1.1301 (7) | 0.3274 (10) | 0.7503 (6) | 0.074 (2) | |
H15A | 1.1513 | 0.4157 | 0.6953 | 0.111* | |
H15B | 1.2209 | 0.2756 | 0.8085 | 0.111* | |
H15C | 1.0794 | 0.3828 | 0.8017 | 0.111* | |
N1 | 0.4778 (4) | 0.3287 (5) | 0.1464 (3) | 0.0341 (9) | |
H1 | 0.4690 | 0.4288 | 0.1051 | 0.041* | |
N2 | 0.4908 (4) | 0.0226 (4) | 0.1509 (3) | 0.0326 (9) | |
H2A | 0.5136 | −0.0733 | 0.1187 | 0.039* | |
O1 | 0.5875 (3) | −0.0211 (4) | 0.3833 (3) | 0.0343 (8) | |
O2 | 0.5039 (3) | 0.1774 (4) | −0.0236 (3) | 0.0383 (8) | |
O3 | 0.1709 (4) | 0.1240 (6) | 0.0862 (4) | 0.0817 (15) | |
O4 | 0.1593 (4) | 0.3304 (6) | 0.2256 (4) | 0.0650 (12) | |
O5 | 1.0392 (4) | 0.1917 (6) | 0.6693 (4) | 0.0682 (12) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.033 (3) | 0.059 (3) | 0.037 (3) | 0.002 (2) | 0.010 (2) | −0.003 (2) |
C2 | 0.044 (3) | 0.040 (3) | 0.039 (3) | 0.006 (2) | 0.014 (2) | 0.003 (2) |
C3 | 0.040 (3) | 0.028 (2) | 0.031 (2) | −0.001 (2) | 0.016 (2) | −0.0004 (18) |
C4 | 0.039 (3) | 0.028 (2) | 0.028 (2) | 0.003 (2) | 0.015 (2) | 0.0012 (19) |
C5 | 0.046 (3) | 0.033 (3) | 0.038 (3) | −0.003 (2) | 0.020 (2) | 0.000 (2) |
C6 | 0.046 (3) | 0.044 (3) | 0.048 (3) | −0.015 (3) | 0.018 (3) | −0.008 (2) |
C7 | 0.042 (3) | 0.023 (2) | 0.028 (2) | 0.000 (2) | 0.017 (2) | −0.0006 (18) |
C8 | 0.039 (2) | 0.026 (2) | 0.029 (2) | 0.001 (2) | 0.0161 (18) | 0.000 (2) |
C9 | 0.037 (2) | 0.025 (2) | 0.028 (2) | 0.000 (2) | 0.013 (2) | 0.0020 (18) |
C10 | 0.036 (2) | 0.031 (2) | 0.030 (2) | 0.001 (2) | 0.0173 (18) | −0.002 (2) |
C11 | 0.042 (3) | 0.040 (3) | 0.042 (3) | 0.002 (2) | 0.016 (2) | −0.004 (2) |
C12 | 0.060 (4) | 0.077 (4) | 0.065 (4) | 0.028 (4) | 0.014 (3) | 0.009 (3) |
C13 | 0.060 (4) | 0.084 (5) | 0.099 (5) | 0.006 (4) | 0.003 (4) | 0.011 (5) |
C14 | 0.051 (3) | 0.030 (2) | 0.047 (3) | −0.007 (2) | 0.028 (2) | −0.002 (2) |
C15 | 0.057 (4) | 0.089 (5) | 0.055 (3) | −0.020 (4) | −0.006 (3) | 0.004 (4) |
N1 | 0.058 (3) | 0.0218 (18) | 0.0261 (19) | 0.0069 (18) | 0.0197 (18) | 0.0055 (15) |
N2 | 0.050 (2) | 0.0202 (19) | 0.036 (2) | 0.0038 (17) | 0.0244 (19) | 0.0013 (15) |
O1 | 0.0418 (18) | 0.0264 (16) | 0.0315 (16) | 0.0019 (14) | 0.0092 (14) | 0.0033 (13) |
O2 | 0.062 (2) | 0.0286 (16) | 0.0309 (15) | −0.0006 (17) | 0.0244 (14) | 0.0015 (14) |
O3 | 0.058 (3) | 0.089 (3) | 0.071 (3) | 0.019 (2) | −0.011 (2) | −0.041 (3) |
O4 | 0.060 (2) | 0.074 (3) | 0.051 (2) | 0.037 (2) | 0.0092 (19) | −0.004 (2) |
O5 | 0.044 (2) | 0.073 (3) | 0.066 (2) | 0.007 (2) | −0.0064 (19) | −0.008 (2) |
C1—C2 | 1.371 (7) | C9—C10 | 1.516 (6) |
C1—O5 | 1.373 (6) | C10—C11 | 1.504 (6) |
C1—C6 | 1.381 (7) | C10—H10 | 0.9800 |
C2—C3 | 1.383 (6) | C11—O3 | 1.174 (5) |
C2—H2 | 0.9300 | C11—O4 | 1.308 (6) |
C3—O1 | 1.366 (5) | C12—O4 | 1.468 (7) |
C3—C4 | 1.389 (6) | C12—C13 | 1.468 (9) |
C4—C5 | 1.369 (6) | C12—H12A | 0.9700 |
C4—C7 | 1.511 (6) | C12—H12B | 0.9700 |
C5—C6 | 1.379 (7) | C13—H13A | 0.9600 |
C5—H5 | 0.9300 | C13—H13B | 0.9600 |
C6—H6 | 0.9300 | C13—H13C | 0.9600 |
C7—N1 | 1.459 (5) | C14—H14A | 0.9600 |
C7—C10 | 1.526 (6) | C14—H14B | 0.9600 |
C7—H7 | 0.9800 | C14—H14C | 0.9600 |
C8—O2 | 1.242 (5) | C15—O5 | 1.420 (7) |
C8—N1 | 1.336 (5) | C15—H15A | 0.9600 |
C8—N2 | 1.351 (5) | C15—H15B | 0.9600 |
C9—N2 | 1.431 (6) | C15—H15C | 0.9600 |
C9—O1 | 1.452 (5) | N1—H1 | 0.8600 |
C9—C14 | 1.510 (6) | N2—H2A | 0.8600 |
C2—C1—O5 | 114.0 (5) | C7—C10—H10 | 109.1 |
C2—C1—C6 | 121.3 (4) | O3—C11—O4 | 123.8 (5) |
O5—C1—C6 | 124.6 (5) | O3—C11—C10 | 126.1 (4) |
C1—C2—C3 | 119.3 (4) | O4—C11—C10 | 110.0 (4) |
C1—C2—H2 | 120.4 | O4—C12—C13 | 110.9 (5) |
C3—C2—H2 | 120.4 | O4—C12—H12A | 109.5 |
O1—C3—C2 | 116.3 (4) | C13—C12—H12A | 109.5 |
O1—C3—C4 | 122.9 (4) | O4—C12—H12B | 109.5 |
C2—C3—C4 | 120.8 (4) | C13—C12—H12B | 109.5 |
C5—C4—C3 | 118.1 (4) | H12A—C12—H12B | 108.1 |
C5—C4—C7 | 122.8 (4) | C12—C13—H13A | 109.5 |
C3—C4—C7 | 119.1 (4) | C12—C13—H13B | 109.5 |
C4—C5—C6 | 122.5 (4) | H13A—C13—H13B | 109.5 |
C4—C5—H5 | 118.8 | C12—C13—H13C | 109.5 |
C6—C5—H5 | 118.8 | H13A—C13—H13C | 109.5 |
C5—C6—C1 | 118.1 (5) | H13B—C13—H13C | 109.5 |
C5—C6—H6 | 121.0 | C9—C14—H14A | 109.5 |
C1—C6—H6 | 121.0 | C9—C14—H14B | 109.5 |
N1—C7—C4 | 112.2 (4) | H14A—C14—H14B | 109.5 |
N1—C7—C10 | 107.3 (3) | C9—C14—H14C | 109.5 |
C4—C7—C10 | 109.1 (3) | H14A—C14—H14C | 109.5 |
N1—C7—H7 | 109.4 | H14B—C14—H14C | 109.5 |
C4—C7—H7 | 109.4 | O5—C15—H15A | 109.5 |
C10—C7—H7 | 109.4 | O5—C15—H15B | 109.5 |
O2—C8—N1 | 121.7 (4) | H15A—C15—H15B | 109.5 |
O2—C8—N2 | 121.1 (4) | O5—C15—H15C | 109.5 |
N1—C8—N2 | 117.2 (3) | H15A—C15—H15C | 109.5 |
N2—C9—O1 | 110.5 (3) | H15B—C15—H15C | 109.5 |
N2—C9—C14 | 109.8 (3) | C8—N1—C7 | 120.4 (4) |
O1—C9—C14 | 103.5 (3) | C8—N1—H1 | 119.8 |
N2—C9—C10 | 109.8 (3) | C7—N1—H1 | 119.8 |
O1—C9—C10 | 107.8 (3) | C8—N2—C9 | 126.1 (3) |
C14—C9—C10 | 115.2 (4) | C8—N2—H2A | 117.0 |
C11—C10—C9 | 115.1 (4) | C9—N2—H2A | 117.0 |
C11—C10—C7 | 109.1 (4) | C3—O1—C9 | 116.7 (3) |
C9—C10—C7 | 105.3 (3) | C11—O4—C12 | 117.5 (4) |
C11—C10—H10 | 109.1 | C1—O5—C15 | 119.1 (5) |
C9—C10—H10 | 109.1 | ||
O5—C1—C2—C3 | −179.8 (4) | N1—C7—C10—C9 | 64.6 (4) |
C6—C1—C2—C3 | 0.4 (7) | C4—C7—C10—C9 | −57.2 (4) |
C1—C2—C3—O1 | −178.5 (4) | C9—C10—C11—O3 | −12.8 (7) |
C1—C2—C3—C4 | −0.5 (7) | C7—C10—C11—O3 | 105.3 (6) |
O1—C3—C4—C5 | 178.2 (4) | C9—C10—C11—O4 | 170.0 (4) |
C2—C3—C4—C5 | 0.4 (6) | C7—C10—C11—O4 | −71.9 (5) |
O1—C3—C4—C7 | −0.9 (6) | O2—C8—N1—C7 | −175.1 (4) |
C2—C3—C4—C7 | −178.7 (4) | N2—C8—N1—C7 | 6.6 (6) |
C3—C4—C5—C6 | −0.2 (7) | C4—C7—N1—C8 | 75.5 (5) |
C7—C4—C5—C6 | 178.9 (4) | C10—C7—N1—C8 | −44.2 (5) |
C4—C5—C6—C1 | 0.0 (7) | O2—C8—N2—C9 | −169.1 (4) |
C2—C1—C6—C5 | −0.2 (7) | N1—C8—N2—C9 | 9.1 (6) |
O5—C1—C6—C5 | −179.9 (5) | O1—C9—N2—C8 | −103.2 (5) |
C5—C4—C7—N1 | 87.0 (5) | C14—C9—N2—C8 | 143.3 (4) |
C3—C4—C7—N1 | −94.0 (5) | C10—C9—N2—C8 | 15.7 (6) |
C5—C4—C7—C10 | −154.3 (4) | C2—C3—O1—C9 | −169.5 (4) |
C3—C4—C7—C10 | 24.7 (5) | C4—C3—O1—C9 | 12.6 (6) |
N2—C9—C10—C11 | 69.2 (5) | N2—C9—O1—C3 | 72.7 (4) |
O1—C9—C10—C11 | −170.3 (3) | C14—C9—O1—C3 | −169.9 (4) |
C14—C9—C10—C11 | −55.3 (5) | C10—C9—O1—C3 | −47.4 (5) |
N2—C9—C10—C7 | −50.9 (4) | O3—C11—O4—C12 | −6.2 (8) |
O1—C9—C10—C7 | 69.5 (4) | C10—C11—O4—C12 | 171.1 (5) |
C14—C9—C10—C7 | −175.5 (4) | C13—C12—O4—C11 | 96.3 (7) |
N1—C7—C10—C11 | −59.5 (4) | C2—C1—O5—C15 | −166.0 (5) |
C4—C7—C10—C11 | 178.8 (3) | C6—C1—O5—C15 | 13.8 (8) |
Cg1 is the centroid of the C1–C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.86 | 2.12 | 2.962 (5) | 168 |
N2—H2A···O2ii | 0.86 | 2.11 | 2.936 (4) | 162 |
C14—H14B···Cg1iii | 0.96 | 2.62 | 3.570 (6) | 171 |
Symmetry codes: (i) −x+1, y+1/2, −z; (ii) −x+1, y−1/2, −z; (iii) −x+1, y−1/2, −z+1. |
Cg1 is the centroid of the C1–C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.86 | 2.12 | 2.962 (5) | 168 |
N2—H2A···O2ii | 0.86 | 2.11 | 2.936 (4) | 162 |
C14—H14B···Cg1iii | 0.96 | 2.62 | 3.570 (6) | 171 |
Symmetry codes: (i) −x+1, y+1/2, −z; (ii) −x+1, y−1/2, −z; (iii) −x+1, y−1/2, −z+1. |
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Dihydropyrimidine derivatives have recently received great attention because of their wide range of therapeutic and pharmacological properties, such as antiviral (Hurst & Hull, 1961), antitumor, antibacterial and antifungal (Ashok et al., 2007), anti-inflammatory (Bahekar & Shinde, 2004), antihypertensive agents, and neuropeptide Y (NPY) antagonists (Mayer et al., 1999). The natural products containing these heterocyclic moieties have been studied as new leads for AIDS therapies (Kappe, 2000).
The molecular structure of the title compound is illustrated in Fig. 1. The methoxyphenyl ring (C1-C6) makes a dihedral angles of 84.70 (12) ° with the mean plane of the tetrahydropyrimidin-2(1H)-one ring (N1/N2/C7-C10). Both the pyran (O1/C3/C4/C7/C10)and tetrahydropyrimidin-2(1H)-one rings have distorted envelope con formations with atom C10 as the flap.
The geometrical parameters of the title molecule agree well with those reported for two very similar compounds, viz. ethyl 2-methyl-4-oxo-3,4,5,6-tetrahydro-2H-2,6-methanobenzo[g][1,3,5]oxadiazocine-11-carboxylate (Jing et al., 2009; Yar et al., 2014) and methyl 2-methyl-4-oxo-3,4,5,6-tetrahydro-2H-2,6-methanobenzo[g][1,3,5]oxadiazocine-11-carboxylate (Liu et al., 2014)
In the crystal, molecules are linked via pairs of N—H···O hydrogen bonds forming zigzag chains propagating along [010], which enclose R22(8) ring motifs (Table 1 and Fig. 2). The chains are linked by C-H···π interactions forming a two-dimensional network parallel to (100).