organic compounds
H,3H,5′H-dispiro[benzo[b]thiophene-2,1′-indolizine-3′,3′′-indoline]-2′-carboxylate
of ethyl 5′′-fluoro-2′′,3-dioxo-6′,7′,8′,8a'-tetrahydro-2′aDepartment of Physics, Presidency College (Autonomous), Chennai 600 005, India, bDepartment of Physics, Pachaiyappa's College for Men, Kanchipuram 631 501, India, and cDepartment of Organic Chemistry, University of Madras, Guindy Campus, Chennai 602 025, India
*Correspondence e-mail: aspandian59@gmail.com
In the title compound, C25H23FN2O4S, the fused piperidine ring of the octahydroindolizine ring system adopts a chair conformation and the five-membered ring has a twisted conformation on the N—C(spiro) bond. The mean planes of the benzothiophene and indoline ring systems are inclined to the mean plane of the pyrrolidine ring by 83.1 (1) and 84.9 (1)°, respectively, and to each other by 29.37 (17)°. In the crystal, molecules are linked via pairs of N—H⋯O hydrogen bonds, forming inversion dimers with an R22(8) ring motif. The dimers are linked via C—H⋯O hydrogen bonds, forming slabs lying parallel to (100). The packing between the slabs features a short [2.734 (2) Å] F⋯F contact.
Keywords: crystal structure; dispiro; benzothiophene; indolizine; indoline; F⋯F interactions; hydrogen bonds.
CCDC reference: 1046671
1. Related literature
For the biological activity of indole derivatives, see: Barden (2011); Oudard et al. (2011); Beale (2011); Aanandhi et al. (2008); Muthukumar et al. (2008). For crystal structures of similar compounds, see: Savithri et al. (2014).
2. Experimental
2.1. Crystal data
|
2.3. Refinement
|
|
Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL2014 and PLATON (Spek, 2009).
Supporting information
CCDC reference: 1046671
10.1107/S2056989015002121/su5063sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015002121/su5063Isup2.hkl
A reaction mixture of (E)-ethyl 2-(3-oxobenzo[b]thiophen-2(3H)-ylidene)acetate (1.0 mmol), 5-Fluoroisatin (1.1 mmol) and pipecolic acid (1.1 mmol) was refluxed in methanol (20 ml) until completion of the reaction was evidenced by TLC analysis. After completion of the reaction the solvent was evaporated under reduced pressure. The crude reaction mixture was dissolved in dichloromethane (2 x 50 ml) and washed with water followed by brine solution. The organic layer was separated and dried over sodium sulfate. After filtration and evaporation of the organic solvent was carried out under reduced pressure. The product was separated by
using hexane and ethyl acetate (9:1) as an to give a colorless solid. The product was dissolved in chloroform (3 ml) and heated for two minutes. The resulting solution was subjected to crystallization by slow evaporation of the solvent resulting in single crystals suitable for X-ray crystallographic studies.The NH H atom was located in a difference Fourier map and freely refined. The C-bound H atoms were positioned geometrically (C–H = 0.93–0.98 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(C) for all other H atoms.
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015) and PLATON (Spek, 2009).C25H23FN2O4S | F(000) = 976 |
Mr = 466.51 | Dx = 1.359 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 13.877 (2) Å | Cell parameters from 3238 reflections |
b = 11.8999 (19) Å | θ = 1.6–25.0° |
c = 15.426 (4) Å | µ = 0.19 mm−1 |
β = 116.463 (4)° | T = 293 K |
V = 2280.5 (8) Å3 | Block, colourless |
Z = 4 | 0.30 × 0.30 × 0.30 mm |
Bruker SMART APEXII area-detector diffractometer | 4784 independent reflections |
Radiation source: fine-focus sealed tube | 3652 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
ω and ϕ scans | θmax = 26.6°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −17→17 |
Tmin = 0.947, Tmax = 0.955 | k = −15→15 |
32121 measured reflections | l = −19→19 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.119 | w = 1/[σ2(Fo2) + (0.0484P)2 + 1.3589P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
4784 reflections | Δρmax = 0.38 e Å−3 |
303 parameters | Δρmin = −0.24 e Å−3 |
C25H23FN2O4S | V = 2280.5 (8) Å3 |
Mr = 466.51 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 13.877 (2) Å | µ = 0.19 mm−1 |
b = 11.8999 (19) Å | T = 293 K |
c = 15.426 (4) Å | 0.30 × 0.30 × 0.30 mm |
β = 116.463 (4)° |
Bruker SMART APEXII area-detector diffractometer | 4784 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 3652 reflections with I > 2σ(I) |
Tmin = 0.947, Tmax = 0.955 | Rint = 0.033 |
32121 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.38 e Å−3 |
4784 reflections | Δρmin = −0.24 e Å−3 |
303 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.35506 (4) | 0.59504 (4) | 0.45922 (4) | 0.04126 (16) | |
F1 | 0.07518 (12) | 1.08370 (13) | 0.02567 (10) | 0.0707 (5) | |
O1 | 0.42901 (14) | 0.75803 (15) | 0.29676 (15) | 0.0677 (5) | |
O2 | 0.32609 (12) | 0.60522 (12) | 0.24108 (12) | 0.0484 (4) | |
O3 | 0.06507 (11) | 0.61184 (12) | 0.25149 (11) | 0.0497 (4) | |
O4 | 0.42650 (12) | 0.85900 (12) | 0.48990 (10) | 0.0464 (4) | |
N1 | 0.18102 (13) | 0.86296 (13) | 0.36986 (11) | 0.0320 (4) | |
N2 | 0.39881 (14) | 1.00547 (14) | 0.38496 (13) | 0.0413 (4) | |
H2 | 0.453 (2) | 1.047 (2) | 0.4226 (18) | 0.055 (7)* | |
C1 | 0.3758 (4) | 0.4290 (3) | 0.2058 (4) | 0.1166 (15) | |
H1A | 0.4227 | 0.3898 | 0.1854 | 0.175* | |
H1B | 0.3032 | 0.4248 | 0.1557 | 0.175* | |
H1C | 0.3799 | 0.3950 | 0.2638 | 0.175* | |
C2 | 0.4091 (2) | 0.5476 (2) | 0.2250 (2) | 0.0677 (8) | |
H2A | 0.4781 | 0.5538 | 0.2817 | 0.081* | |
H2B | 0.4155 | 0.5801 | 0.1701 | 0.081* | |
C3 | 0.34861 (16) | 0.70724 (17) | 0.27985 (16) | 0.0401 (5) | |
C4 | 0.25734 (14) | 0.74688 (15) | 0.29925 (13) | 0.0308 (4) | |
H4 | 0.1921 | 0.7407 | 0.2377 | 0.037* | |
C5 | 0.23753 (14) | 0.67371 (15) | 0.37302 (13) | 0.0305 (4) | |
C6 | 0.10876 (18) | 0.73457 (18) | 0.44935 (17) | 0.0459 (5) | |
H6A | 0.1225 | 0.6662 | 0.4873 | 0.055* | |
H6B | 0.0443 | 0.7236 | 0.3890 | 0.055* | |
C7 | 0.0934 (2) | 0.8330 (2) | 0.50504 (19) | 0.0569 (6) | |
H7A | 0.0297 | 0.8203 | 0.5146 | 0.068* | |
H7B | 0.1548 | 0.8380 | 0.5683 | 0.068* | |
C8 | 0.0813 (2) | 0.9427 (2) | 0.45076 (19) | 0.0553 (6) | |
H8A | 0.0129 | 0.9426 | 0.3930 | 0.066* | |
H8B | 0.0806 | 1.0046 | 0.4914 | 0.066* | |
C9 | 0.17105 (19) | 0.96107 (17) | 0.42185 (17) | 0.0454 (5) | |
H9A | 0.1557 | 1.0270 | 0.3809 | 0.054* | |
H9B | 0.2383 | 0.9737 | 0.4792 | 0.054* | |
C10 | 0.20346 (16) | 0.76111 (15) | 0.42910 (14) | 0.0336 (4) | |
H10 | 0.2660 | 0.7761 | 0.4912 | 0.040* | |
C11 | 0.26183 (14) | 0.86879 (15) | 0.33304 (13) | 0.0298 (4) | |
C12 | 0.23884 (15) | 0.95884 (15) | 0.25758 (13) | 0.0315 (4) | |
C13 | 0.15370 (16) | 0.97322 (17) | 0.16708 (14) | 0.0381 (5) | |
H13 | 0.0970 | 0.9223 | 0.1421 | 0.046* | |
C14 | 0.15659 (17) | 1.06670 (19) | 0.11540 (15) | 0.0443 (5) | |
C15 | 0.23724 (19) | 1.14452 (19) | 0.14926 (17) | 0.0499 (6) | |
H15 | 0.2349 | 1.2064 | 0.1116 | 0.060* | |
C16 | 0.32277 (18) | 1.13050 (18) | 0.24034 (17) | 0.0467 (5) | |
H16 | 0.3788 | 1.1822 | 0.2652 | 0.056* | |
C17 | 0.32165 (16) | 1.03742 (16) | 0.29245 (14) | 0.0358 (4) | |
C18 | 0.37352 (15) | 0.90668 (16) | 0.41243 (14) | 0.0346 (4) | |
C19 | 0.14945 (14) | 0.58543 (15) | 0.31808 (14) | 0.0331 (4) | |
C20 | 0.18285 (15) | 0.47195 (16) | 0.35464 (14) | 0.0344 (4) | |
C21 | 0.11991 (19) | 0.37579 (17) | 0.32308 (17) | 0.0464 (5) | |
H21 | 0.0485 | 0.3808 | 0.2767 | 0.056* | |
C22 | 0.1637 (2) | 0.27384 (19) | 0.3607 (2) | 0.0601 (7) | |
H22 | 0.1221 | 0.2090 | 0.3404 | 0.072* | |
C23 | 0.2707 (2) | 0.26735 (18) | 0.4297 (2) | 0.0589 (7) | |
H23 | 0.3002 | 0.1973 | 0.4537 | 0.071* | |
C24 | 0.33419 (19) | 0.36132 (18) | 0.46330 (17) | 0.0474 (5) | |
H24 | 0.4053 | 0.3556 | 0.5101 | 0.057* | |
C25 | 0.28901 (16) | 0.46518 (16) | 0.42540 (14) | 0.0349 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0304 (2) | 0.0319 (3) | 0.0474 (3) | −0.0023 (2) | 0.0046 (2) | 0.0043 (2) |
F1 | 0.0645 (9) | 0.0798 (11) | 0.0452 (8) | −0.0036 (8) | 0.0042 (7) | 0.0238 (7) |
O1 | 0.0545 (10) | 0.0552 (10) | 0.1114 (15) | −0.0150 (8) | 0.0533 (11) | −0.0126 (10) |
O2 | 0.0471 (9) | 0.0390 (8) | 0.0651 (10) | 0.0031 (7) | 0.0304 (8) | −0.0106 (7) |
O3 | 0.0325 (7) | 0.0351 (8) | 0.0596 (10) | −0.0030 (6) | 0.0009 (7) | −0.0007 (7) |
O4 | 0.0420 (8) | 0.0379 (8) | 0.0404 (8) | −0.0110 (6) | 0.0013 (6) | 0.0069 (6) |
N1 | 0.0370 (8) | 0.0234 (8) | 0.0375 (9) | −0.0013 (6) | 0.0184 (7) | −0.0005 (6) |
N2 | 0.0395 (9) | 0.0313 (9) | 0.0403 (9) | −0.0136 (8) | 0.0063 (8) | 0.0003 (7) |
C1 | 0.159 (4) | 0.0526 (19) | 0.188 (4) | 0.030 (2) | 0.123 (4) | −0.005 (2) |
C2 | 0.0676 (17) | 0.0603 (16) | 0.094 (2) | 0.0148 (14) | 0.0527 (16) | −0.0084 (15) |
C3 | 0.0392 (11) | 0.0346 (11) | 0.0480 (12) | −0.0025 (9) | 0.0208 (9) | −0.0010 (9) |
C4 | 0.0295 (9) | 0.0270 (9) | 0.0330 (10) | −0.0038 (7) | 0.0112 (8) | −0.0033 (7) |
C5 | 0.0257 (9) | 0.0241 (9) | 0.0365 (10) | −0.0021 (7) | 0.0093 (8) | 0.0006 (7) |
C6 | 0.0538 (13) | 0.0395 (12) | 0.0549 (13) | −0.0007 (10) | 0.0336 (11) | 0.0064 (10) |
C7 | 0.0713 (17) | 0.0557 (15) | 0.0614 (15) | 0.0034 (13) | 0.0456 (14) | 0.0020 (12) |
C8 | 0.0738 (17) | 0.0443 (13) | 0.0642 (15) | 0.0102 (12) | 0.0455 (14) | −0.0025 (12) |
C9 | 0.0647 (14) | 0.0286 (10) | 0.0512 (13) | 0.0016 (10) | 0.0333 (11) | −0.0036 (9) |
C10 | 0.0379 (10) | 0.0264 (9) | 0.0347 (10) | −0.0021 (8) | 0.0145 (8) | 0.0017 (8) |
C11 | 0.0301 (9) | 0.0252 (9) | 0.0304 (9) | −0.0041 (7) | 0.0101 (8) | −0.0010 (7) |
C12 | 0.0343 (10) | 0.0264 (9) | 0.0348 (10) | −0.0018 (8) | 0.0162 (8) | −0.0013 (8) |
C13 | 0.0374 (10) | 0.0397 (11) | 0.0349 (10) | −0.0035 (9) | 0.0141 (9) | 0.0007 (9) |
C14 | 0.0432 (12) | 0.0489 (13) | 0.0354 (11) | 0.0049 (10) | 0.0127 (9) | 0.0086 (10) |
C15 | 0.0589 (14) | 0.0420 (12) | 0.0505 (13) | 0.0003 (11) | 0.0259 (11) | 0.0169 (10) |
C16 | 0.0495 (13) | 0.0345 (11) | 0.0534 (13) | −0.0098 (9) | 0.0205 (11) | 0.0053 (10) |
C17 | 0.0377 (10) | 0.0298 (10) | 0.0389 (11) | −0.0031 (8) | 0.0161 (9) | 0.0013 (8) |
C18 | 0.0351 (10) | 0.0275 (9) | 0.0364 (10) | −0.0064 (8) | 0.0117 (8) | −0.0015 (8) |
C19 | 0.0280 (9) | 0.0267 (9) | 0.0414 (11) | −0.0035 (7) | 0.0126 (8) | −0.0040 (8) |
C20 | 0.0347 (10) | 0.0266 (9) | 0.0427 (11) | −0.0019 (8) | 0.0180 (9) | −0.0011 (8) |
C21 | 0.0468 (12) | 0.0335 (11) | 0.0554 (13) | −0.0079 (9) | 0.0198 (11) | −0.0049 (10) |
C22 | 0.0697 (17) | 0.0259 (11) | 0.0760 (17) | −0.0098 (11) | 0.0246 (14) | −0.0020 (11) |
C23 | 0.0758 (17) | 0.0253 (11) | 0.0736 (17) | 0.0053 (11) | 0.0313 (14) | 0.0067 (11) |
C24 | 0.0468 (12) | 0.0377 (11) | 0.0536 (13) | 0.0078 (10) | 0.0186 (11) | 0.0079 (10) |
C25 | 0.0374 (10) | 0.0273 (9) | 0.0416 (11) | 0.0004 (8) | 0.0191 (9) | 0.0015 (8) |
S1—C25 | 1.753 (2) | C7—H7A | 0.9700 |
S1—C5 | 1.8362 (18) | C7—H7B | 0.9700 |
F1—C14 | 1.356 (2) | C8—C9 | 1.515 (3) |
O1—C3 | 1.191 (3) | C8—H8A | 0.9700 |
O2—C3 | 1.328 (2) | C8—H8B | 0.9700 |
O2—C2 | 1.454 (3) | C9—H9A | 0.9700 |
O3—C19 | 1.205 (2) | C9—H9B | 0.9700 |
O4—C18 | 1.228 (2) | C10—H10 | 0.9800 |
N1—C9 | 1.458 (2) | C11—C12 | 1.508 (3) |
N1—C10 | 1.465 (2) | C11—C18 | 1.554 (2) |
N1—C11 | 1.467 (2) | C12—C13 | 1.380 (3) |
N2—C18 | 1.348 (2) | C12—C17 | 1.390 (3) |
N2—C17 | 1.402 (3) | C13—C14 | 1.380 (3) |
N2—H2 | 0.87 (3) | C13—H13 | 0.9300 |
C1—C2 | 1.474 (4) | C14—C15 | 1.365 (3) |
C1—H1A | 0.9600 | C15—C16 | 1.387 (3) |
C1—H1B | 0.9600 | C15—H15 | 0.9300 |
C1—H1C | 0.9600 | C16—C17 | 1.373 (3) |
C2—H2A | 0.9700 | C16—H16 | 0.9300 |
C2—H2B | 0.9700 | C19—C20 | 1.457 (3) |
C3—C4 | 1.501 (3) | C20—C21 | 1.389 (3) |
C4—C11 | 1.533 (2) | C20—C25 | 1.391 (3) |
C4—C5 | 1.552 (3) | C21—C22 | 1.365 (3) |
C4—H4 | 0.9800 | C21—H21 | 0.9300 |
C5—C19 | 1.547 (2) | C22—C23 | 1.391 (4) |
C5—C10 | 1.555 (3) | C22—H22 | 0.9300 |
C6—C10 | 1.513 (3) | C23—C24 | 1.374 (3) |
C6—C7 | 1.523 (3) | C23—H23 | 0.9300 |
C6—H6A | 0.9700 | C24—C25 | 1.391 (3) |
C6—H6B | 0.9700 | C24—H24 | 0.9300 |
C7—C8 | 1.520 (3) | ||
C25—S1—C5 | 93.21 (9) | C8—C9—H9B | 109.7 |
C3—O2—C2 | 117.57 (19) | H9A—C9—H9B | 108.2 |
C9—N1—C10 | 111.42 (15) | N1—C10—C6 | 109.79 (16) |
C9—N1—C11 | 116.84 (15) | N1—C10—C5 | 103.83 (15) |
C10—N1—C11 | 107.09 (14) | C6—C10—C5 | 118.85 (16) |
C18—N2—C17 | 111.63 (16) | N1—C10—H10 | 108.0 |
C18—N2—H2 | 123.8 (16) | C6—C10—H10 | 108.0 |
C17—N2—H2 | 124.2 (16) | C5—C10—H10 | 108.0 |
C2—C1—H1A | 109.5 | N1—C11—C12 | 113.40 (15) |
C2—C1—H1B | 109.5 | N1—C11—C4 | 99.47 (14) |
H1A—C1—H1B | 109.5 | C12—C11—C4 | 116.58 (15) |
C2—C1—H1C | 109.5 | N1—C11—C18 | 112.01 (15) |
H1A—C1—H1C | 109.5 | C12—C11—C18 | 101.29 (14) |
H1B—C1—H1C | 109.5 | C4—C11—C18 | 114.69 (15) |
O2—C2—C1 | 106.6 (2) | C13—C12—C17 | 119.70 (18) |
O2—C2—H2A | 110.4 | C13—C12—C11 | 131.32 (17) |
C1—C2—H2A | 110.4 | C17—C12—C11 | 108.98 (16) |
O2—C2—H2B | 110.4 | C14—C13—C12 | 116.89 (19) |
C1—C2—H2B | 110.4 | C14—C13—H13 | 121.6 |
H2A—C2—H2B | 108.6 | C12—C13—H13 | 121.6 |
O1—C3—O2 | 124.9 (2) | F1—C14—C15 | 117.2 (2) |
O1—C3—C4 | 126.0 (2) | F1—C14—C13 | 118.98 (19) |
O2—C3—C4 | 109.08 (17) | C15—C14—C13 | 123.8 (2) |
C3—C4—C11 | 117.05 (16) | C14—C15—C16 | 119.4 (2) |
C3—C4—C5 | 114.26 (16) | C14—C15—H15 | 120.3 |
C11—C4—C5 | 105.98 (15) | C16—C15—H15 | 120.3 |
C3—C4—H4 | 106.3 | C17—C16—C15 | 117.5 (2) |
C11—C4—H4 | 106.3 | C17—C16—H16 | 121.2 |
C5—C4—H4 | 106.3 | C15—C16—H16 | 121.2 |
C19—C5—C4 | 109.53 (15) | C16—C17—C12 | 122.62 (19) |
C19—C5—C10 | 113.40 (15) | C16—C17—N2 | 127.73 (19) |
C4—C5—C10 | 103.29 (14) | C12—C17—N2 | 109.64 (17) |
C19—C5—S1 | 106.29 (12) | O4—C18—N2 | 125.60 (18) |
C4—C5—S1 | 115.26 (13) | O4—C18—C11 | 125.97 (17) |
C10—C5—S1 | 109.29 (13) | N2—C18—C11 | 108.26 (16) |
C10—C6—C7 | 108.01 (18) | O3—C19—C20 | 126.31 (17) |
C10—C6—H6A | 110.1 | O3—C19—C5 | 121.35 (17) |
C7—C6—H6A | 110.1 | C20—C19—C5 | 112.32 (15) |
C10—C6—H6B | 110.1 | C21—C20—C25 | 120.52 (18) |
C7—C6—H6B | 110.1 | C21—C20—C19 | 125.85 (18) |
H6A—C6—H6B | 108.4 | C25—C20—C19 | 113.60 (16) |
C8—C7—C6 | 111.02 (19) | C22—C21—C20 | 119.5 (2) |
C8—C7—H7A | 109.4 | C22—C21—H21 | 120.3 |
C6—C7—H7A | 109.4 | C20—C21—H21 | 120.3 |
C8—C7—H7B | 109.4 | C21—C22—C23 | 119.7 (2) |
C6—C7—H7B | 109.4 | C21—C22—H22 | 120.1 |
H7A—C7—H7B | 108.0 | C23—C22—H22 | 120.1 |
C9—C8—C7 | 112.5 (2) | C24—C23—C22 | 122.0 (2) |
C9—C8—H8A | 109.1 | C24—C23—H23 | 119.0 |
C7—C8—H8A | 109.1 | C22—C23—H23 | 119.0 |
C9—C8—H8B | 109.1 | C23—C24—C25 | 118.1 (2) |
C7—C8—H8B | 109.1 | C23—C24—H24 | 120.9 |
H8A—C8—H8B | 107.8 | C25—C24—H24 | 120.9 |
N1—C9—C8 | 109.79 (18) | C20—C25—C24 | 120.17 (18) |
N1—C9—H9A | 109.7 | C20—C25—S1 | 114.38 (14) |
C8—C9—H9A | 109.7 | C24—C25—S1 | 125.45 (16) |
N1—C9—H9B | 109.7 | ||
C3—O2—C2—C1 | 165.9 (3) | C4—C11—C12—C17 | −128.26 (18) |
C2—O2—C3—O1 | 5.0 (4) | C18—C11—C12—C17 | −3.1 (2) |
C2—O2—C3—C4 | −174.5 (2) | C17—C12—C13—C14 | 0.4 (3) |
O1—C3—C4—C11 | 7.5 (3) | C11—C12—C13—C14 | 179.6 (2) |
O2—C3—C4—C11 | −172.97 (16) | C12—C13—C14—F1 | 179.32 (19) |
O1—C3—C4—C5 | −117.2 (2) | C12—C13—C14—C15 | −0.8 (3) |
O2—C3—C4—C5 | 62.3 (2) | F1—C14—C15—C16 | −179.5 (2) |
C3—C4—C5—C19 | −94.74 (18) | C13—C14—C15—C16 | 0.6 (4) |
C11—C4—C5—C19 | 134.87 (15) | C14—C15—C16—C17 | 0.0 (4) |
C3—C4—C5—C10 | 144.15 (16) | C15—C16—C17—C12 | −0.3 (3) |
C11—C4—C5—C10 | 13.77 (18) | C15—C16—C17—N2 | 179.6 (2) |
C3—C4—C5—S1 | 25.0 (2) | C13—C12—C17—C16 | 0.1 (3) |
C11—C4—C5—S1 | −105.36 (15) | C11—C12—C17—C16 | −179.2 (2) |
C25—S1—C5—C19 | −1.52 (14) | C13—C12—C17—N2 | −179.83 (18) |
C25—S1—C5—C4 | −123.05 (14) | C11—C12—C17—N2 | 0.8 (2) |
C25—S1—C5—C10 | 121.20 (13) | C18—N2—C17—C16 | −177.7 (2) |
C10—C6—C7—C8 | 54.8 (3) | C18—N2—C17—C12 | 2.3 (2) |
C6—C7—C8—C9 | −51.8 (3) | C17—N2—C18—O4 | −179.8 (2) |
C10—N1—C9—C8 | −58.9 (2) | C17—N2—C18—C11 | −4.3 (2) |
C11—N1—C9—C8 | 177.59 (17) | N1—C11—C18—O4 | 58.7 (3) |
C7—C8—C9—N1 | 52.5 (3) | C12—C11—C18—O4 | 179.9 (2) |
C9—N1—C10—C6 | 64.7 (2) | C4—C11—C18—O4 | −53.7 (3) |
C11—N1—C10—C6 | −166.38 (16) | N1—C11—C18—N2 | −116.76 (18) |
C9—N1—C10—C5 | −167.21 (16) | C12—C11—C18—N2 | 4.4 (2) |
C11—N1—C10—C5 | −38.31 (17) | C4—C11—C18—N2 | 130.83 (18) |
C7—C6—C10—N1 | −61.1 (2) | C4—C5—C19—O3 | −49.5 (3) |
C7—C6—C10—C5 | 179.72 (18) | C10—C5—C19—O3 | 65.3 (2) |
C19—C5—C10—N1 | −104.87 (17) | S1—C5—C19—O3 | −174.61 (17) |
C4—C5—C10—N1 | 13.58 (17) | C4—C5—C19—C20 | 128.87 (17) |
S1—C5—C10—N1 | 136.76 (13) | C10—C5—C19—C20 | −116.35 (18) |
C19—C5—C10—C6 | 17.4 (2) | S1—C5—C19—C20 | 3.7 (2) |
C4—C5—C10—C6 | 135.84 (18) | O3—C19—C20—C21 | −4.7 (4) |
S1—C5—C10—C6 | −100.99 (18) | C5—C19—C20—C21 | 177.0 (2) |
C9—N1—C11—C12 | −63.7 (2) | O3—C19—C20—C25 | 173.4 (2) |
C10—N1—C11—C12 | 170.60 (15) | C5—C19—C20—C25 | −4.8 (2) |
C9—N1—C11—C4 | 171.82 (16) | C25—C20—C21—C22 | −1.3 (3) |
C10—N1—C11—C4 | 46.10 (17) | C19—C20—C21—C22 | 176.8 (2) |
C9—N1—C11—C18 | 50.2 (2) | C20—C21—C22—C23 | −0.4 (4) |
C10—N1—C11—C18 | −75.51 (17) | C21—C22—C23—C24 | 1.5 (4) |
C3—C4—C11—N1 | −164.31 (16) | C22—C23—C24—C25 | −0.9 (4) |
C5—C4—C11—N1 | −35.55 (17) | C21—C20—C25—C24 | 1.9 (3) |
C3—C4—C11—C12 | 73.4 (2) | C19—C20—C25—C24 | −176.41 (19) |
C5—C4—C11—C12 | −157.80 (15) | C21—C20—C25—S1 | −178.07 (17) |
C3—C4—C11—C18 | −44.7 (2) | C19—C20—C25—S1 | 3.6 (2) |
C5—C4—C11—C18 | 84.10 (18) | C23—C24—C25—C20 | −0.8 (3) |
N1—C11—C12—C13 | −62.1 (3) | C23—C24—C25—S1 | 179.14 (19) |
C4—C11—C12—C13 | 52.5 (3) | C5—S1—C25—C20 | −1.11 (17) |
C18—C11—C12—C13 | 177.7 (2) | C5—S1—C25—C24 | 179.0 (2) |
N1—C11—C12—C17 | 117.10 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O4i | 0.87 (3) | 1.96 (3) | 2.834 (2) | 179 (2) |
C1—H1A···O1ii | 0.96 | 2.50 | 3.401 (4) | 156 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1, y−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O4i | 0.87 (3) | 1.96 (3) | 2.834 (2) | 179 (2) |
C1—H1A···O1ii | 0.96 | 2.50 | 3.401 (4) | 156 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1, y−1/2, −z+1/2. |
Acknowledgements
The authors thank the TBI X-ray facility, CAS in Crystallography and BioPhysics, University of Madras, Chennai, India, for the data collection.
References
Aanandhi, M. V., Vaidhyalingam, V. & George, S. (2008). Asian J. Chem. 20, 4588–4594. CAS Google Scholar
Barden, T. C. (2011). Top Heterocycl. Chem. 26, 31–46. CrossRef Google Scholar
Beale, J. M. (2011). Wilson and Gisvold's Textbook of Organic Medicinal and Pharmaceutical Chemistry, 12th ed., edited by J. M. Beale & J. H. Block, pp. 342–352. Philadelphia: Lippincott Williams and Wilkins. Google Scholar
Bruker (2008). APEX2, SADABS and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Muthukumar, V. A., George, S. & Vaidhyalingam, V. (2008). Biol. Pharm. Bull. 31, 1461–1464. Web of Science CrossRef PubMed CAS Google Scholar
Oudard, S., Beuselinck, B., Decoene, J. & Albers, P. (2011). Cancer Treat. Rev. 37, 178–184. Web of Science CrossRef CAS PubMed Google Scholar
Savithri, M. P., Suresh, M., Raghunathan, R., Vimala, G., Raja, R. & SubbiahPandi, A. (2014). Acta Cryst. E70, 94–97. CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Indole-containing compounds are best known for their medicinal properties in the pharmaceutical industry. In modern times, analogs based on indole are significant players in a diverse array of markets such as dyes, plastics, agriculture, vitamin supplements, over-the-counterdrugs, flavour enhancers and perfumery (Barden, 2011). Several indole derivatives, such as Sunitinib, a tyrosine kinase inhibitor (Oudard et al., 2011), or Delavirdine a non-nucleoside reverse transcriptase inhibitor (Beale, 2011), are in clinical use. Spiroindoles are important heterocyclic compounds with diverse bioactivities (Aanandhi et al., 2008; Muthukumar et al., 2008).
The X-ray study confirmed the molecular structure and atomic connectivity for the title compound, as illustrated in Fig. 1. Pyridine ring adopts a chair conformation [puckering parameters q2= 0.069 (3) Å and π2= 303 (2)°]. The pyrrole ring adopts a twisted conformation with the lowest asymmetry parameters ΔC2(N1—C10) = 1.8 (2)°. The pyrrole ring system is oriented with a dihedral angles of 84.9 (1) and 83.1 (1)°, respectively with respect to the mean planes of benzothiophene ring and indole ring systems.
In the crystal, molecules are linked via N-H···O hydrogen bonds forming inversion dimers with an R22(8) ring motif (Table 1 and Fig. 2). The dimers are linked via C—H···O hydrogen bonds forming slabs lying parallel to (100); see Table 1 and Fig. 2. The slabs are linked by a short F···Fi interaction [2.73482) Å, symmetry code: (i) -x, -y+2, -z] forming a three-dimensional structure.