organic compounds
of pseudoguainolide
aUnité de Recherche VARENBIOMOL, Constantine 1 University, Constantine 25000, Algeria, and bSchool of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, Wales
*Correspondence e-mail: nourbeghidja@yahoo.fr, kariukib@cf.ac.uk
The lactone ring in the title molecule, C15H22O3 (systematic name: 3,4a,8-trimethyldodecahydroazuleno[6,5-b]furan-2,5-dione), assumes an with the methine C atom adjacent to the the methine C atom carrying the methyl substituent being the flap atom. The other five-membered ring adopts a twisted conformation with the twist being about the methine–methylene C—C bond. The seven-membered ring is based on a twisted boat conformation. No specific interactions are noted in the the crystal packing.
Keywords: crystal structure; plant extract; inula graveolens.
CCDC reference: 1047797
1. Related literature
For background to inula graveolens, see: Chiappini & Fardella (1980); Rustaiyan et al. (1987). For related structures, see: Herz et al. (1982); Schmidt et al. (1996); Wu et al. (2012); Billodeaux et al. (2014).
2. Experimental
2.1. Crystal data
|
2.3. Refinement
|
Data collection: COLLECT (Nonius, 2000); cell SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).
Supporting information
CCDC reference: 1047797
10.1107/S2056989015002510/tk5358sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015002510/tk5358Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989015002510/tk5358Isup3.cml
The air-dried aerial parts of inula graveolens (500 g) were extracted with acetone/Et2O (1:1) at room temperature. The solution was filtered off and concentrated under reduced pressure to give a pale-yellow gum (9 g). The gum was subjected to successive
(silica gel) and TLC (silica gel, PF254). Eleven fractions were obtained. Fraction 5 gave a material which crystallized as colourless crystals with a melting point of 152 oC.Carbon-bound H-atoms were placed in calculated positions (C—H = 0.96–0.98 Å) and were included in the
in the riding model approximation, with Uiso(H) set to 1.2–1.5Uequiv(C).Data collection: COLLECT (Nonius, 2000); cell
SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).Fig. 1. A molecule showing atom labels and 50% probability displacement ellipsoids for non-H atoms. |
C15H22O3 | Dx = 1.225 Mg m−3 |
Mr = 250.33 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 3098 reflections |
a = 7.4320 (3) Å | θ = 3.1–27.5° |
b = 11.9278 (3) Å | µ = 0.08 mm−1 |
c = 15.3152 (6) Å | T = 150 K |
V = 1357.65 (8) Å3 | Plate, colourless |
Z = 4 | 0.20 × 0.20 × 0.04 mm |
F(000) = 544 |
Nonius KappaCCD diffractometer | 3098 independent reflections |
Radiation source: fine-focus sealed tube | 2533 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
CCD slices, ω and ϕ scans | θmax = 27.5°, θmin = 3.1° |
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997) | h = −9→9 |
Tmin = 0.984, Tmax = 0.997 | k = −15→15 |
9382 measured reflections | l = −19→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.107 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0453P)2 + 0.2031P] where P = (Fo2 + 2Fc2)/3 |
3098 reflections | (Δ/σ)max < 0.001 |
166 parameters | Δρmax = 0.15 e Å−3 |
0 restraints | Δρmin = −0.16 e Å−3 |
C15H22O3 | V = 1357.65 (8) Å3 |
Mr = 250.33 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.4320 (3) Å | µ = 0.08 mm−1 |
b = 11.9278 (3) Å | T = 150 K |
c = 15.3152 (6) Å | 0.20 × 0.20 × 0.04 mm |
Nonius KappaCCD diffractometer | 3098 independent reflections |
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997) | 2533 reflections with I > 2σ(I) |
Tmin = 0.984, Tmax = 0.997 | Rint = 0.041 |
9382 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.107 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.15 e Å−3 |
3098 reflections | Δρmin = −0.16 e Å−3 |
166 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.8136 (2) | 0.24699 (16) | 0.52812 (12) | 0.0383 (4) | |
C2 | 0.8423 (3) | 0.16380 (15) | 0.45546 (12) | 0.0407 (4) | |
H2 | 0.9722 | 0.1503 | 0.4522 | 0.049* | |
C3 | 0.7918 (2) | 0.22980 (13) | 0.37360 (11) | 0.0318 (4) | |
H3 | 0.6620 | 0.2220 | 0.3642 | 0.038* | |
C4 | 0.8307 (2) | 0.35109 (14) | 0.40005 (11) | 0.0338 (4) | |
H4 | 0.9552 | 0.3703 | 0.3852 | 0.041* | |
C5 | 0.8884 (2) | 0.19024 (14) | 0.29170 (12) | 0.0346 (4) | |
H5A | 0.8386 | 0.1183 | 0.2748 | 0.041* | |
H5B | 1.0142 | 0.1785 | 0.3060 | 0.041* | |
C6 | 0.8781 (2) | 0.26974 (15) | 0.21218 (12) | 0.0371 (4) | |
C7 | 0.7099 (3) | 0.34762 (15) | 0.20872 (12) | 0.0388 (4) | |
H7 | 0.6065 | 0.3039 | 0.2292 | 0.047* | |
C8 | 0.7176 (3) | 0.45618 (14) | 0.26350 (13) | 0.0429 (5) | |
H8 | 0.8326 | 0.4932 | 0.2513 | 0.052* | |
C9 | 0.7050 (3) | 0.43722 (14) | 0.36244 (12) | 0.0396 (4) | |
H9A | 0.7276 | 0.5081 | 0.3914 | 0.048* | |
H9B | 0.5827 | 0.4152 | 0.3763 | 0.048* | |
C10 | 0.8618 (3) | 0.20169 (18) | 0.12824 (14) | 0.0495 (5) | |
C11 | 0.7283 (4) | 0.25562 (19) | 0.06728 (14) | 0.0630 (6) | |
H11A | 0.6211 | 0.2099 | 0.0617 | 0.076* | |
H11B | 0.7805 | 0.2665 | 0.0098 | 0.076* | |
C12 | 0.6842 (3) | 0.36830 (18) | 0.10993 (14) | 0.0583 (6) | |
H12A | 0.5613 | 0.3905 | 0.0973 | 0.070* | |
H12B | 0.7651 | 0.4264 | 0.0893 | 0.070* | |
C13 | 0.7564 (3) | 0.05319 (14) | 0.47094 (13) | 0.0453 (5) | |
H13A | 0.6282 | 0.0623 | 0.4737 | 0.068* | |
H13B | 0.7992 | 0.0226 | 0.5251 | 0.068* | |
H13C | 0.7864 | 0.0032 | 0.4240 | 0.068* | |
C14 | 1.0567 (3) | 0.33493 (19) | 0.20250 (15) | 0.0519 (5) | |
H14A | 1.0488 | 0.3846 | 0.1533 | 0.078* | |
H14B | 1.1536 | 0.2830 | 0.1937 | 0.078* | |
H14C | 1.0786 | 0.3777 | 0.2545 | 0.078* | |
C15 | 0.5664 (3) | 0.53701 (18) | 0.23775 (17) | 0.0650 (7) | |
H15A | 0.5670 | 0.6004 | 0.2764 | 0.098* | |
H15B | 0.4526 | 0.4992 | 0.2419 | 0.098* | |
H15C | 0.5847 | 0.5620 | 0.1788 | 0.098* | |
O1 | 0.79726 (18) | 0.22938 (12) | 0.60507 (9) | 0.0478 (3) | |
O2 | 0.80792 (16) | 0.35200 (10) | 0.49559 (7) | 0.0390 (3) | |
O3 | 0.9465 (2) | 0.11791 (15) | 0.11224 (11) | 0.0721 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0265 (8) | 0.0451 (10) | 0.0433 (11) | −0.0014 (8) | −0.0003 (8) | 0.0008 (8) |
C2 | 0.0416 (10) | 0.0404 (9) | 0.0400 (10) | −0.0014 (8) | 0.0015 (8) | 0.0040 (8) |
C3 | 0.0265 (8) | 0.0298 (8) | 0.0392 (9) | −0.0018 (7) | 0.0004 (7) | 0.0008 (7) |
C4 | 0.0296 (9) | 0.0335 (8) | 0.0384 (9) | −0.0040 (7) | 0.0040 (7) | −0.0020 (7) |
C5 | 0.0314 (9) | 0.0331 (9) | 0.0393 (10) | 0.0025 (7) | −0.0013 (8) | −0.0011 (7) |
C6 | 0.0344 (9) | 0.0381 (9) | 0.0387 (10) | −0.0011 (8) | 0.0020 (8) | 0.0015 (8) |
C7 | 0.0381 (9) | 0.0357 (8) | 0.0426 (10) | 0.0007 (8) | −0.0058 (8) | 0.0050 (8) |
C8 | 0.0453 (11) | 0.0301 (8) | 0.0534 (12) | 0.0008 (9) | 0.0005 (9) | 0.0064 (8) |
C9 | 0.0373 (10) | 0.0303 (8) | 0.0512 (11) | −0.0012 (8) | 0.0023 (9) | −0.0031 (7) |
C10 | 0.0526 (12) | 0.0532 (12) | 0.0426 (12) | 0.0015 (10) | −0.0019 (9) | −0.0027 (9) |
C11 | 0.0807 (17) | 0.0660 (14) | 0.0424 (12) | 0.0121 (14) | −0.0134 (12) | −0.0037 (10) |
C12 | 0.0731 (15) | 0.0544 (12) | 0.0472 (12) | 0.0092 (12) | −0.0115 (12) | 0.0079 (9) |
C13 | 0.0473 (11) | 0.0383 (10) | 0.0502 (12) | 0.0076 (9) | 0.0064 (9) | 0.0056 (8) |
C14 | 0.0441 (11) | 0.0595 (12) | 0.0522 (13) | −0.0096 (10) | 0.0101 (10) | 0.0073 (10) |
C15 | 0.0772 (17) | 0.0419 (11) | 0.0761 (17) | 0.0178 (12) | −0.0123 (14) | 0.0068 (11) |
O1 | 0.0432 (8) | 0.0636 (8) | 0.0367 (8) | −0.0003 (7) | 0.0028 (6) | 0.0023 (6) |
O2 | 0.0380 (7) | 0.0401 (7) | 0.0388 (7) | −0.0038 (6) | 0.0016 (6) | −0.0055 (5) |
O3 | 0.0840 (12) | 0.0763 (11) | 0.0560 (10) | 0.0307 (10) | −0.0134 (9) | −0.0248 (9) |
C1—O1 | 1.203 (2) | C8—C15 | 1.532 (3) |
C1—O2 | 1.349 (2) | C8—C9 | 1.535 (3) |
C1—C2 | 1.506 (3) | C8—H8 | 0.9800 |
C2—C13 | 1.485 (2) | C9—H9A | 0.9700 |
C2—C3 | 1.527 (2) | C9—H9B | 0.9700 |
C2—H2 | 0.9800 | C10—O3 | 1.206 (2) |
C3—C5 | 1.520 (2) | C10—C11 | 1.507 (3) |
C3—C4 | 1.530 (2) | C11—C12 | 1.530 (3) |
C3—H3 | 0.9800 | C11—H11A | 0.9700 |
C4—O2 | 1.473 (2) | C11—H11B | 0.9700 |
C4—C9 | 1.503 (2) | C12—H12A | 0.9700 |
C4—H4 | 0.9800 | C12—H12B | 0.9700 |
C5—C6 | 1.545 (3) | C13—H13A | 0.9600 |
C5—H5A | 0.9700 | C13—H13B | 0.9600 |
C5—H5B | 0.9700 | C13—H13C | 0.9600 |
C6—C10 | 1.525 (3) | C14—H14A | 0.9600 |
C6—C14 | 1.546 (3) | C14—H14B | 0.9600 |
C6—C7 | 1.558 (3) | C14—H14C | 0.9600 |
C7—C8 | 1.544 (3) | C15—H15A | 0.9600 |
C7—C12 | 1.545 (3) | C15—H15B | 0.9600 |
C7—H7 | 0.9800 | C15—H15C | 0.9600 |
O1—C1—O2 | 121.39 (17) | C9—C8—H8 | 107.9 |
O1—C1—C2 | 128.53 (18) | C7—C8—H8 | 107.9 |
O2—C1—C2 | 110.08 (15) | C4—C9—C8 | 116.18 (15) |
C13—C2—C1 | 114.00 (15) | C4—C9—H9A | 108.2 |
C13—C2—C3 | 118.92 (16) | C8—C9—H9A | 108.2 |
C1—C2—C3 | 103.43 (14) | C4—C9—H9B | 108.2 |
C13—C2—H2 | 106.6 | C8—C9—H9B | 108.2 |
C1—C2—H2 | 106.6 | H9A—C9—H9B | 107.4 |
C3—C2—H2 | 106.6 | O3—C10—C11 | 124.8 (2) |
C5—C3—C2 | 113.67 (14) | O3—C10—C6 | 124.83 (19) |
C5—C3—C4 | 115.01 (14) | C11—C10—C6 | 110.31 (17) |
C2—C3—C4 | 102.93 (13) | C10—C11—C12 | 104.58 (18) |
C5—C3—H3 | 108.3 | C10—C11—H11A | 110.8 |
C2—C3—H3 | 108.3 | C12—C11—H11A | 110.8 |
C4—C3—H3 | 108.3 | C10—C11—H11B | 110.8 |
O2—C4—C9 | 107.71 (13) | C12—C11—H11B | 110.8 |
O2—C4—C3 | 104.38 (13) | H11A—C11—H11B | 108.9 |
C9—C4—C3 | 115.32 (15) | C11—C12—C7 | 104.55 (16) |
O2—C4—H4 | 109.7 | C11—C12—H12A | 110.8 |
C9—C4—H4 | 109.7 | C7—C12—H12A | 110.8 |
C3—C4—H4 | 109.7 | C11—C12—H12B | 110.8 |
C3—C5—C6 | 115.87 (13) | C7—C12—H12B | 110.8 |
C3—C5—H5A | 108.3 | H12A—C12—H12B | 108.9 |
C6—C5—H5A | 108.3 | C2—C13—H13A | 109.5 |
C3—C5—H5B | 108.3 | C2—C13—H13B | 109.5 |
C6—C5—H5B | 108.3 | H13A—C13—H13B | 109.5 |
H5A—C5—H5B | 107.4 | C2—C13—H13C | 109.5 |
C10—C6—C5 | 109.98 (14) | H13A—C13—H13C | 109.5 |
C10—C6—C14 | 104.76 (16) | H13B—C13—H13C | 109.5 |
C5—C6—C14 | 109.96 (15) | C6—C14—H14A | 109.5 |
C10—C6—C7 | 103.01 (15) | C6—C14—H14B | 109.5 |
C5—C6—C7 | 115.63 (14) | H14A—C14—H14B | 109.5 |
C14—C6—C7 | 112.70 (14) | C6—C14—H14C | 109.5 |
C8—C7—C12 | 113.76 (15) | H14A—C14—H14C | 109.5 |
C8—C7—C6 | 116.85 (15) | H14B—C14—H14C | 109.5 |
C12—C7—C6 | 103.16 (15) | C8—C15—H15A | 109.5 |
C8—C7—H7 | 107.5 | C8—C15—H15B | 109.5 |
C12—C7—H7 | 107.5 | H15A—C15—H15B | 109.5 |
C6—C7—H7 | 107.5 | C8—C15—H15C | 109.5 |
C15—C8—C9 | 107.59 (17) | H15A—C15—H15C | 109.5 |
C15—C8—C7 | 111.13 (17) | H15B—C15—H15C | 109.5 |
C9—C8—C7 | 114.24 (14) | C1—O2—C4 | 110.89 (13) |
C15—C8—H8 | 107.9 |
Experimental details
Crystal data | |
Chemical formula | C15H22O3 |
Mr | 250.33 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 150 |
a, b, c (Å) | 7.4320 (3), 11.9278 (3), 15.3152 (6) |
V (Å3) | 1357.65 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.20 × 0.20 × 0.04 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997) |
Tmin, Tmax | 0.984, 0.997 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9382, 3098, 2533 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.107, 1.08 |
No. of reflections | 3098 |
No. of parameters | 166 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.15, −0.16 |
Computer programs: COLLECT (Nonius, 2000), DENZO and SCALEPACK (Otwinowski & Minor, 1997), SIR92 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), WinGX (Farrugia, 2012).
Acknowledgements
The authors extend their appreciation to Constantine 1 University and Cardiff University for supporting this research.
References
Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119. Web of Science CrossRef CAS IUCr Journals Google Scholar
Billodeaux, D. R., Menelaou, M. A., Fischer, N. H. & Fronczek, F. R. (2014). Private communication (deposition number CCDC 989352). CCDC, Cambridge, England. Google Scholar
Chiappini, I. & Fardella, G. (1980). Fitoterapia, 51, 161–162. CAS Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Herz, W., Watanabe, K. & Blount, J. F. (1982). J. Org. Chem. 47, 3011–3012. CSD CrossRef CAS Web of Science Google Scholar
Nonius (2000). COLLECT. Nonius BV, Delft, The Netherlands. Google Scholar
Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press. Google Scholar
Rustaiyan, A., Jakupovic, J., Chau-Thi, T. V., Bohlmann, F. & Sadjadi, A. (1987). Phytochemistry, 26, 2603–2606. CrossRef CAS Web of Science Google Scholar
Schmidt, T. J., Fronczek, F. R. & Liu, Y.-H. (1996). J. Mol. Struct. 385, 113–121. CSD CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Wu, P., Su, M.-X., Wang, Y., Wang, G.-C., Ye, W.-C., Chung, H.-Y., Li, J., Jiang, R.-W. & Li, Y.-L. (2012). Phytochemistry, 76, 133–140. Web of Science CSD CrossRef CAS PubMed Google Scholar
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Inula graveolens have consistently been the subject of research interest (Chiappini & Fardella, 1980; Rustaiyan et al., 1987). Our interest is in the extracts from aerial parts of Algerian species such as stems, flowers and leaves. The asymmetric unit of the crystal structure consists of a single molecule (Fig. 1). In the molecule, the lactone ring assumes an envelope conformation. In the crystal structure, the planes of the lactone rings are approximately parallel. The molecules are arranged with the lactone rings stacked parallel to the a axis. Structures of some related compounds have been reported (Herz et al., 1982; Schmidt et al., 1996; Wu et al., 2012; Billodeaux et al., 2014).