organic compounds
Redetermination and
of berkeleydioneaDepartment of Biological and Pharmaceutical Sciences, University of Montana, 32 Campus Dr., Missoula, Montana 59812, USA
*Correspondence e-mail: andrea.stierle@mso.umt.edu
The S,7R,9S,11R,11aS)-methyl 9-hydroxy-1,1,5,7,9,11a-hexamethyl-14-methylidene-3,8,10-trioxo-1,3,4,5a,6,7,8,9,10,11,11a,12-dodecahydro-7,11-methanocycloocta[4,5]cyclohepta[1,2-c]pyran-11-carboxylate], C26H32O7, has been reported previously [Stierle et al. (2004). Org. Lett. 6, 1049–1052]. However, the could not be determined from the data collected with Mo Kα radiation and has now been determined by of the with data collected using Cu Kα radiation. It is in agreement with the previous assignment, and the crystal packing is similar to that described previously.
of the title compound, berkeleydione [systematic name; (5aCCDC reference: 1051259
1. Related literature
For further information on the isolation and properties of berkeleydione and related compounds, see: Stierle et al. (2004, 2011). For the previous NMR and see: Stierle et al. (2004).
2. Experimental
2.1. Crystal data
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2.3. Refinement
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2.
Supporting information
CCDC reference: 1051259
10.1107/S2056989015003965/su5086sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015003965/su5086Isup2.hkl
Clear prisms of the title compound were grown by slow evaporation of a solution in water and methanol at 245 K.
All the H atoms were located in difference Fourier maps and the hydroxyl H atom was freely refined. The C-bound H atoms were included in calculated positions and refined using a riding model: C—H = 0.98 - 1.00 Å with Uiso(H) = 1.5Ueq(C) for the methyl H atoms and = 1.2Ueq(C) for the other H atoms.
The structure of berkeleydione, determined by detailed analysis of MS and NMR data has been reported (Stierle et al., 2004). The X-ray structure was also determined but the α data collected. The helicity rule of for cisoid homoannular dienes (Stierle et al., 2011) was applied to determine the of berkeleydione. The has now been determined by X-ray by of the with data collected using CuKα radiation. This was shown to be the same as that determined with the helicity rule.
could not be determined from the MoKFor further information on the isolation and properties of berkeleydione and related compounds, see: Stierle et al. (2004, 2011). For the previous NMR and
see: Stierle et al. (2004).Clear prisms of the title compound were grown by slow evaporation of a solution in water and methanol at 245 K.
detailsAll the H atoms were located in difference Fourier maps and the hydroxyl H atom was freely refined. The C-bound H atoms were included in calculated positions and refined using a riding model: C—H = 0.98 - 1.00 Å with Uiso(H) = 1.5Ueq(C) for the methyl H atoms and = 1.2Ueq(C) for the other H atoms.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).Fig. 1. Molecular structure of the title compound with atom labelling. Displacement ellipsoides aredrawn at the 50% probability level. Hydrogen atoms have been omitted for clarity. |
C26H32O7 | Dx = 1.293 Mg m−3 |
Mr = 456.51 | Cu Kα radiation, λ = 1.54178 Å |
Orthorhombic, P212121 | Cell parameters from 9233 reflections |
a = 9.1832 (6) Å | θ = 3.9–74.7° |
b = 14.5805 (9) Å | µ = 0.77 mm−1 |
c = 17.5148 (11) Å | T = 100 K |
V = 2345.2 (3) Å3 | Prism, colourless |
Z = 4 | 0.1 × 0.1 × 0.1 mm |
F(000) = 976 |
Bruker D8 Venture diffractometer | 4814 independent reflections |
Radiation source: microfocus sealed X-ray tube, Incoatec Iµus | 4533 reflections with I > 2σ(I) |
Double Bounce Multilayer Mirror monochromator | Rint = 0.051 |
Detector resolution: 10.5 pixels mm-1 | θmax = 74.8°, θmin = 4.0° |
ω and φ scans | h = −11→11 |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | k = −18→18 |
Tmin = 0.646, Tmax = 0.754 | l = −21→21 |
39170 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.091 | w = 1/[σ2(Fo2) + (0.0569P)2 + 0.2309P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max < 0.001 |
4814 reflections | Δρmax = 0.20 e Å−3 |
309 parameters | Δρmin = −0.19 e Å−3 |
0 restraints | Absolute structure: Flack x determined using 1914 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.07 (7) |
C26H32O7 | V = 2345.2 (3) Å3 |
Mr = 456.51 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 9.1832 (6) Å | µ = 0.77 mm−1 |
b = 14.5805 (9) Å | T = 100 K |
c = 17.5148 (11) Å | 0.1 × 0.1 × 0.1 mm |
Bruker D8 Venture diffractometer | 4814 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4533 reflections with I > 2σ(I) |
Tmin = 0.646, Tmax = 0.754 | Rint = 0.051 |
39170 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.091 | Δρmax = 0.20 e Å−3 |
S = 1.06 | Δρmin = −0.19 e Å−3 |
4814 reflections | Absolute structure: Flack x determined using 1914 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
309 parameters | Absolute structure parameter: 0.07 (7) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.83088 (19) | 0.23759 (10) | 0.57687 (9) | 0.0347 (4) | |
O2 | 0.89494 (17) | 0.30771 (9) | 0.47209 (8) | 0.0285 (3) | |
O3 | 0.8155 (2) | 0.76251 (12) | 0.40185 (9) | 0.0419 (4) | |
O4 | 0.66301 (16) | 0.56275 (9) | 0.22151 (8) | 0.0281 (3) | |
O5 | 0.69193 (19) | 0.77820 (9) | 0.23618 (9) | 0.0317 (3) | |
O6 | 0.26938 (18) | 0.55485 (13) | 0.23397 (10) | 0.0431 (4) | |
O7 | 0.40659 (17) | 0.65832 (10) | 0.17368 (9) | 0.0325 (3) | |
C1 | 0.8103 (2) | 0.30106 (13) | 0.53388 (11) | 0.0263 (4) | |
C2 | 0.6911 (2) | 0.36998 (14) | 0.54887 (11) | 0.0283 (4) | |
H2A | 0.7163 | 0.4042 | 0.5959 | 0.034* | |
H2B | 0.6000 | 0.3359 | 0.5593 | 0.034* | |
C3 | 0.6607 (2) | 0.43885 (13) | 0.48639 (11) | 0.0242 (4) | |
C4 | 0.5814 (2) | 0.51480 (14) | 0.49700 (11) | 0.0256 (4) | |
C5 | 0.5717 (2) | 0.58423 (13) | 0.43178 (11) | 0.0231 (4) | |
H5A | 0.6701 | 0.5848 | 0.4074 | 0.028* | |
C6 | 0.5449 (2) | 0.68248 (14) | 0.45934 (11) | 0.0286 (4) | |
H6A | 0.6173 | 0.6985 | 0.4990 | 0.034* | |
H6B | 0.4467 | 0.6868 | 0.4824 | 0.034* | |
C7 | 0.5568 (3) | 0.75115 (14) | 0.39198 (11) | 0.0300 (5) | |
C8 | 0.7131 (3) | 0.74107 (14) | 0.36265 (12) | 0.0303 (5) | |
C9 | 0.7363 (2) | 0.70236 (14) | 0.28192 (11) | 0.0267 (4) | |
C10 | 0.6291 (2) | 0.62327 (12) | 0.26507 (11) | 0.0223 (4) | |
C11 | 0.4753 (2) | 0.62691 (14) | 0.30026 (11) | 0.0244 (4) | |
C12 | 0.4637 (2) | 0.55420 (14) | 0.36813 (11) | 0.0252 (4) | |
C13 | 0.5029 (2) | 0.45512 (14) | 0.34211 (12) | 0.0281 (4) | |
H13A | 0.4463 | 0.4116 | 0.3737 | 0.034* | |
H13B | 0.4700 | 0.4475 | 0.2886 | 0.034* | |
C14 | 0.6610 (2) | 0.42778 (12) | 0.34624 (11) | 0.0256 (4) | |
H14 | 0.7127 | 0.4174 | 0.3001 | 0.031* | |
C15 | 0.7308 (2) | 0.41761 (12) | 0.41267 (12) | 0.0240 (4) | |
C16 | 0.8869 (2) | 0.38926 (13) | 0.42057 (11) | 0.0272 (4) | |
C17 | 0.9756 (3) | 0.46460 (15) | 0.45895 (13) | 0.0324 (5) | |
H17A | 0.9326 | 0.4792 | 0.5087 | 0.049* | |
H17B | 0.9752 | 0.5195 | 0.4267 | 0.049* | |
H17C | 1.0760 | 0.4435 | 0.4661 | 0.049* | |
C18 | 0.9605 (3) | 0.35696 (16) | 0.34803 (13) | 0.0377 (5) | |
H18A | 1.0577 | 0.3334 | 0.3602 | 0.057* | |
H18B | 0.9692 | 0.4084 | 0.3123 | 0.057* | |
H18C | 0.9023 | 0.3082 | 0.3246 | 0.057* | |
C19 | 0.3075 (2) | 0.55189 (18) | 0.39963 (13) | 0.0366 (5) | |
H19A | 0.3050 | 0.5147 | 0.4462 | 0.055* | |
H19B | 0.2423 | 0.5250 | 0.3614 | 0.055* | |
H19C | 0.2757 | 0.6145 | 0.4114 | 0.055* | |
C20 | 0.3701 (2) | 0.60662 (14) | 0.23390 (13) | 0.0290 (4) | |
C21 | 0.8924 (2) | 0.67381 (16) | 0.26896 (14) | 0.0351 (5) | |
H21A | 0.9055 | 0.6559 | 0.2155 | 0.053* | |
H21B | 0.9159 | 0.6218 | 0.3022 | 0.053* | |
H21C | 0.9572 | 0.7253 | 0.2808 | 0.053* | |
C22 | 0.4455 (2) | 0.72279 (14) | 0.33273 (11) | 0.0284 (4) | |
C23 | 0.3275 (3) | 0.77049 (16) | 0.31622 (13) | 0.0399 (5) | |
H23A | 0.3083 | 0.8264 | 0.3422 | 0.048* | |
H23B | 0.2618 | 0.7489 | 0.2784 | 0.048* | |
C24 | 0.5349 (3) | 0.84908 (15) | 0.42152 (14) | 0.0449 (6) | |
H24A | 0.5350 | 0.8919 | 0.3784 | 0.067* | |
H24B | 0.6141 | 0.8649 | 0.4566 | 0.067* | |
H24C | 0.4415 | 0.8531 | 0.4484 | 0.067* | |
C25 | 0.5110 (3) | 0.53681 (16) | 0.57273 (12) | 0.0339 (5) | |
H25A | 0.5036 | 0.4808 | 0.6034 | 0.051* | |
H25B | 0.4134 | 0.5619 | 0.5640 | 0.051* | |
H25C | 0.5703 | 0.5821 | 0.6000 | 0.051* | |
C26 | 0.3148 (3) | 0.64775 (18) | 0.10765 (13) | 0.0379 (5) | |
H26A | 0.3550 | 0.6834 | 0.0652 | 0.057* | |
H26B | 0.2166 | 0.6698 | 0.1195 | 0.057* | |
H26C | 0.3104 | 0.5828 | 0.0933 | 0.057* | |
H5 | 0.690 (3) | 0.760 (2) | 0.1879 (18) | 0.048 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0492 (9) | 0.0275 (7) | 0.0272 (7) | 0.0056 (7) | −0.0029 (7) | 0.0036 (6) |
O2 | 0.0348 (8) | 0.0230 (6) | 0.0278 (7) | 0.0035 (6) | −0.0013 (6) | 0.0001 (6) |
O3 | 0.0490 (10) | 0.0459 (9) | 0.0308 (8) | −0.0174 (8) | −0.0085 (8) | −0.0017 (7) |
O4 | 0.0343 (8) | 0.0247 (6) | 0.0252 (7) | −0.0003 (6) | 0.0025 (6) | −0.0005 (6) |
O5 | 0.0476 (9) | 0.0231 (6) | 0.0242 (7) | −0.0044 (6) | −0.0031 (7) | 0.0044 (6) |
O6 | 0.0364 (9) | 0.0530 (10) | 0.0400 (9) | −0.0150 (8) | −0.0122 (7) | 0.0104 (8) |
O7 | 0.0357 (8) | 0.0360 (8) | 0.0258 (7) | −0.0023 (7) | −0.0060 (7) | 0.0046 (6) |
C1 | 0.0337 (10) | 0.0222 (8) | 0.0230 (9) | −0.0024 (8) | −0.0059 (8) | −0.0010 (7) |
C2 | 0.0351 (11) | 0.0263 (9) | 0.0235 (9) | 0.0014 (8) | 0.0006 (8) | 0.0024 (7) |
C3 | 0.0271 (10) | 0.0242 (9) | 0.0213 (9) | −0.0037 (7) | −0.0009 (7) | 0.0016 (7) |
C4 | 0.0268 (9) | 0.0282 (9) | 0.0218 (9) | −0.0006 (7) | 0.0022 (8) | 0.0030 (7) |
C5 | 0.0247 (10) | 0.0246 (9) | 0.0200 (9) | 0.0011 (7) | 0.0026 (7) | 0.0012 (7) |
C6 | 0.0385 (11) | 0.0274 (10) | 0.0200 (9) | 0.0069 (9) | 0.0018 (8) | −0.0002 (8) |
C7 | 0.0467 (13) | 0.0212 (9) | 0.0222 (9) | 0.0053 (8) | −0.0017 (9) | −0.0012 (7) |
C8 | 0.0443 (13) | 0.0208 (8) | 0.0256 (10) | −0.0071 (8) | −0.0054 (9) | 0.0033 (7) |
C9 | 0.0302 (10) | 0.0260 (9) | 0.0240 (9) | −0.0068 (8) | −0.0017 (8) | 0.0043 (8) |
C10 | 0.0274 (9) | 0.0214 (8) | 0.0181 (8) | −0.0011 (7) | −0.0015 (7) | 0.0041 (7) |
C11 | 0.0254 (9) | 0.0236 (9) | 0.0240 (9) | 0.0004 (7) | −0.0015 (8) | 0.0034 (7) |
C12 | 0.0236 (9) | 0.0282 (9) | 0.0239 (9) | −0.0027 (8) | 0.0005 (8) | 0.0057 (7) |
C13 | 0.0341 (11) | 0.0235 (9) | 0.0268 (10) | −0.0079 (8) | −0.0064 (8) | 0.0033 (8) |
C14 | 0.0376 (11) | 0.0168 (8) | 0.0225 (9) | −0.0007 (8) | 0.0000 (8) | −0.0012 (7) |
C15 | 0.0312 (10) | 0.0178 (8) | 0.0229 (9) | −0.0014 (7) | 0.0021 (8) | 0.0001 (7) |
C16 | 0.0337 (11) | 0.0229 (9) | 0.0251 (9) | 0.0024 (8) | 0.0024 (8) | 0.0029 (7) |
C17 | 0.0297 (10) | 0.0307 (10) | 0.0369 (11) | −0.0045 (8) | −0.0003 (9) | 0.0036 (9) |
C18 | 0.0438 (13) | 0.0372 (11) | 0.0322 (11) | 0.0140 (10) | 0.0081 (10) | 0.0020 (9) |
C19 | 0.0253 (10) | 0.0499 (13) | 0.0347 (11) | −0.0023 (9) | 0.0043 (9) | 0.0141 (10) |
C20 | 0.0286 (10) | 0.0294 (9) | 0.0290 (10) | 0.0027 (8) | −0.0018 (9) | 0.0028 (8) |
C21 | 0.0295 (11) | 0.0421 (11) | 0.0337 (11) | −0.0071 (9) | −0.0010 (9) | 0.0067 (9) |
C22 | 0.0368 (12) | 0.0259 (9) | 0.0226 (9) | 0.0043 (8) | 0.0030 (8) | 0.0029 (7) |
C23 | 0.0466 (14) | 0.0412 (12) | 0.0320 (11) | 0.0167 (11) | 0.0006 (10) | 0.0003 (9) |
C24 | 0.0781 (18) | 0.0246 (10) | 0.0319 (12) | 0.0116 (11) | −0.0072 (13) | −0.0039 (9) |
C25 | 0.0394 (12) | 0.0370 (11) | 0.0254 (10) | 0.0078 (9) | 0.0084 (9) | 0.0056 (9) |
C26 | 0.0374 (12) | 0.0503 (13) | 0.0259 (10) | 0.0068 (10) | −0.0070 (9) | 0.0001 (9) |
O1—C1 | 1.208 (2) | C12—C13 | 1.557 (3) |
O2—C1 | 1.336 (3) | C12—C19 | 1.537 (3) |
O2—C16 | 1.494 (2) | C13—H13A | 0.9900 |
O3—C8 | 1.206 (3) | C13—H13B | 0.9900 |
O4—C10 | 1.207 (2) | C13—C14 | 1.507 (3) |
O5—C9 | 1.425 (2) | C14—H14 | 0.9500 |
O5—H5 | 0.89 (3) | C14—C15 | 1.337 (3) |
O6—C20 | 1.194 (3) | C15—C16 | 1.498 (3) |
O7—C20 | 1.339 (3) | C16—C17 | 1.524 (3) |
O7—C26 | 1.439 (3) | C16—C18 | 1.514 (3) |
C1—C2 | 1.509 (3) | C17—H17A | 0.9800 |
C2—H2A | 0.9900 | C17—H17B | 0.9800 |
C2—H2B | 0.9900 | C17—H17C | 0.9800 |
C2—C3 | 1.511 (3) | C18—H18A | 0.9800 |
C3—C4 | 1.338 (3) | C18—H18B | 0.9800 |
C3—C15 | 1.476 (3) | C18—H18C | 0.9800 |
C4—C5 | 1.529 (3) | C19—H19A | 0.9800 |
C4—C25 | 1.510 (3) | C19—H19B | 0.9800 |
C5—H5A | 1.0000 | C19—H19C | 0.9800 |
C5—C6 | 1.531 (3) | C21—H21A | 0.9800 |
C5—C12 | 1.555 (3) | C21—H21B | 0.9800 |
C6—H6A | 0.9900 | C21—H21C | 0.9800 |
C6—H6B | 0.9900 | C22—C23 | 1.320 (3) |
C6—C7 | 1.551 (3) | C23—H23A | 0.9500 |
C7—C8 | 1.531 (3) | C23—H23B | 0.9500 |
C7—C22 | 1.514 (3) | C24—H24A | 0.9800 |
C7—C24 | 1.532 (3) | C24—H24B | 0.9800 |
C8—C9 | 1.537 (3) | C24—H24C | 0.9800 |
C9—C10 | 1.545 (3) | C25—H25A | 0.9800 |
C9—C21 | 1.510 (3) | C25—H25B | 0.9800 |
C10—C11 | 1.542 (3) | C25—H25C | 0.9800 |
C11—C12 | 1.596 (3) | C26—H26A | 0.9800 |
C11—C20 | 1.540 (3) | C26—H26B | 0.9800 |
C11—C22 | 1.534 (3) | C26—H26C | 0.9800 |
C1—O2—C16 | 121.19 (15) | C14—C13—H13B | 108.0 |
C9—O5—H5 | 107.9 (19) | C13—C14—H14 | 118.9 |
C20—O7—C26 | 115.23 (17) | C15—C14—C13 | 122.23 (19) |
O1—C1—O2 | 117.99 (19) | C15—C14—H14 | 118.9 |
O1—C1—C2 | 121.03 (19) | C3—C15—C16 | 113.24 (17) |
O2—C1—C2 | 120.98 (17) | C14—C15—C3 | 121.92 (19) |
C1—C2—H2A | 108.1 | C14—C15—C16 | 124.76 (19) |
C1—C2—H2B | 108.1 | O2—C16—C15 | 108.84 (16) |
C1—C2—C3 | 116.77 (17) | O2—C16—C17 | 106.30 (16) |
H2A—C2—H2B | 107.3 | O2—C16—C18 | 103.70 (15) |
C3—C2—H2A | 108.1 | C15—C16—C17 | 110.69 (17) |
C3—C2—H2B | 108.1 | C15—C16—C18 | 115.82 (18) |
C4—C3—C2 | 123.34 (18) | C18—C16—C17 | 110.82 (19) |
C4—C3—C15 | 122.18 (18) | C16—C17—H17A | 109.5 |
C15—C3—C2 | 114.43 (17) | C16—C17—H17B | 109.5 |
C3—C4—C5 | 118.42 (17) | C16—C17—H17C | 109.5 |
C3—C4—C25 | 122.07 (18) | H17A—C17—H17B | 109.5 |
C25—C4—C5 | 119.37 (17) | H17A—C17—H17C | 109.5 |
C4—C5—H5A | 105.8 | H17B—C17—H17C | 109.5 |
C4—C5—C6 | 113.15 (16) | C16—C18—H18A | 109.5 |
C4—C5—C12 | 112.74 (16) | C16—C18—H18B | 109.5 |
C6—C5—H5A | 105.8 | C16—C18—H18C | 109.5 |
C6—C5—C12 | 112.76 (16) | H18A—C18—H18B | 109.5 |
C12—C5—H5A | 105.8 | H18A—C18—H18C | 109.5 |
C5—C6—H6A | 109.5 | H18B—C18—H18C | 109.5 |
C5—C6—H6B | 109.5 | C12—C19—H19A | 109.5 |
C5—C6—C7 | 110.66 (16) | C12—C19—H19B | 109.5 |
H6A—C6—H6B | 108.1 | C12—C19—H19C | 109.5 |
C7—C6—H6A | 109.5 | H19A—C19—H19B | 109.5 |
C7—C6—H6B | 109.5 | H19A—C19—H19C | 109.5 |
C8—C7—C6 | 105.02 (17) | H19B—C19—H19C | 109.5 |
C8—C7—C24 | 109.0 (2) | O6—C20—O7 | 123.4 (2) |
C22—C7—C6 | 107.30 (18) | O6—C20—C11 | 127.3 (2) |
C22—C7—C8 | 112.11 (16) | O7—C20—C11 | 109.24 (17) |
C22—C7—C24 | 113.42 (19) | C9—C21—H21A | 109.5 |
C24—C7—C6 | 109.61 (17) | C9—C21—H21B | 109.5 |
O3—C8—C7 | 121.0 (2) | C9—C21—H21C | 109.5 |
O3—C8—C9 | 120.7 (2) | H21A—C21—H21B | 109.5 |
C7—C8—C9 | 118.28 (18) | H21A—C21—H21C | 109.5 |
O5—C9—C8 | 101.10 (16) | H21B—C21—H21C | 109.5 |
O5—C9—C10 | 106.84 (16) | C7—C22—C11 | 112.51 (17) |
O5—C9—C21 | 113.64 (17) | C23—C22—C7 | 124.1 (2) |
C8—C9—C10 | 111.18 (16) | C23—C22—C11 | 123.1 (2) |
C21—C9—C8 | 111.79 (18) | C22—C23—H23A | 120.0 |
C21—C9—C10 | 111.75 (17) | C22—C23—H23B | 120.0 |
O4—C10—C9 | 120.13 (18) | H23A—C23—H23B | 120.0 |
O4—C10—C11 | 120.94 (17) | C7—C24—H24A | 109.5 |
C11—C10—C9 | 118.79 (16) | C7—C24—H24B | 109.5 |
C10—C11—C12 | 109.63 (15) | C7—C24—H24C | 109.5 |
C20—C11—C10 | 105.44 (16) | H24A—C24—H24B | 109.5 |
C20—C11—C12 | 113.12 (16) | H24A—C24—H24C | 109.5 |
C22—C11—C10 | 110.06 (16) | H24B—C24—H24C | 109.5 |
C22—C11—C12 | 108.50 (16) | C4—C25—H25A | 109.5 |
C22—C11—C20 | 110.07 (17) | C4—C25—H25B | 109.5 |
C5—C12—C11 | 107.71 (15) | C4—C25—H25C | 109.5 |
C5—C12—C13 | 108.88 (16) | H25A—C25—H25B | 109.5 |
C13—C12—C11 | 112.50 (16) | H25A—C25—H25C | 109.5 |
C19—C12—C5 | 110.12 (17) | H25B—C25—H25C | 109.5 |
C19—C12—C11 | 110.13 (17) | O7—C26—H26A | 109.5 |
C19—C12—C13 | 107.49 (18) | O7—C26—H26B | 109.5 |
C12—C13—H13A | 108.0 | O7—C26—H26C | 109.5 |
C12—C13—H13B | 108.0 | H26A—C26—H26B | 109.5 |
H13A—C13—H13B | 107.3 | H26A—C26—H26C | 109.5 |
C14—C13—C12 | 117.01 (16) | H26B—C26—H26C | 109.5 |
C14—C13—H13A | 108.0 | ||
O1—C1—C2—C3 | −171.76 (19) | C9—C10—C11—C20 | 131.44 (17) |
O2—C1—C2—C3 | 7.3 (3) | C9—C10—C11—C22 | 12.8 (2) |
O3—C8—C9—O5 | −106.8 (2) | C10—C11—C12—C5 | 64.23 (19) |
O3—C8—C9—C10 | 140.1 (2) | C10—C11—C12—C13 | −55.8 (2) |
O3—C8—C9—C21 | 14.4 (3) | C10—C11—C12—C19 | −175.66 (17) |
O4—C10—C11—C12 | 77.8 (2) | C10—C11—C20—O6 | 133.4 (2) |
O4—C10—C11—C20 | −44.2 (2) | C10—C11—C20—O7 | −47.7 (2) |
O4—C10—C11—C22 | −162.91 (17) | C10—C11—C22—C7 | −57.5 (2) |
O5—C9—C10—O4 | 99.8 (2) | C10—C11—C22—C23 | 129.0 (2) |
O5—C9—C10—C11 | −76.0 (2) | C11—C12—C13—C14 | 88.1 (2) |
C1—O2—C16—C15 | −39.0 (2) | C12—C5—C6—C7 | −58.2 (2) |
C1—O2—C16—C17 | 80.2 (2) | C12—C11—C20—O6 | 13.6 (3) |
C1—O2—C16—C18 | −162.85 (18) | C12—C11—C20—O7 | −167.50 (16) |
C1—C2—C3—C4 | −165.57 (19) | C12—C11—C22—C7 | 62.4 (2) |
C1—C2—C3—C15 | 12.1 (3) | C12—C11—C22—C23 | −111.0 (2) |
C2—C3—C4—C5 | 173.63 (18) | C12—C13—C14—C15 | 67.9 (2) |
C2—C3—C4—C25 | −1.9 (3) | C13—C14—C15—C3 | −4.4 (3) |
C2—C3—C15—C14 | 137.95 (19) | C13—C14—C15—C16 | 179.03 (17) |
C2—C3—C15—C16 | −45.1 (2) | C14—C15—C16—O2 | −125.66 (19) |
C3—C4—C5—C6 | −152.62 (19) | C14—C15—C16—C17 | 117.9 (2) |
C3—C4—C5—C12 | 77.9 (2) | C14—C15—C16—C18 | −9.4 (3) |
C3—C15—C16—O2 | 57.5 (2) | C15—C3—C4—C5 | −3.8 (3) |
C3—C15—C16—C17 | −59.0 (2) | C15—C3—C4—C25 | −179.4 (2) |
C3—C15—C16—C18 | 173.82 (17) | C16—O2—C1—O1 | −173.54 (18) |
C4—C3—C15—C14 | −44.4 (3) | C16—O2—C1—C2 | 7.3 (3) |
C4—C3—C15—C16 | 132.5 (2) | C19—C12—C13—C14 | −150.45 (18) |
C4—C5—C6—C7 | 172.39 (18) | C20—C11—C12—C5 | −178.42 (16) |
C4—C5—C12—C11 | −174.52 (16) | C20—C11—C12—C13 | 61.6 (2) |
C4—C5—C12—C13 | −52.3 (2) | C20—C11—C12—C19 | −58.3 (2) |
C4—C5—C12—C19 | 65.4 (2) | C20—C11—C22—C7 | −173.30 (17) |
C5—C6—C7—C8 | −61.0 (2) | C20—C11—C22—C23 | 13.2 (3) |
C5—C6—C7—C22 | 58.4 (2) | C21—C9—C10—O4 | −25.1 (3) |
C5—C6—C7—C24 | −178.0 (2) | C21—C9—C10—C11 | 159.17 (17) |
C5—C12—C13—C14 | −31.2 (2) | C22—C7—C8—O3 | 178.38 (19) |
C6—C5—C12—C11 | 55.8 (2) | C22—C7—C8—C9 | −1.9 (2) |
C6—C5—C12—C13 | 178.09 (16) | C22—C11—C12—C5 | −56.0 (2) |
C6—C5—C12—C19 | −64.3 (2) | C22—C11—C12—C13 | −175.99 (17) |
C6—C7—C8—O3 | −65.4 (2) | C22—C11—C12—C19 | 64.1 (2) |
C6—C7—C8—C9 | 114.26 (18) | C22—C11—C20—O6 | −107.9 (3) |
C6—C7—C22—C11 | −62.5 (2) | C22—C11—C20—O7 | 71.0 (2) |
C6—C7—C22—C23 | 110.9 (2) | C24—C7—C8—O3 | 52.0 (3) |
C7—C8—C9—O5 | 73.5 (2) | C24—C7—C8—C9 | −128.35 (18) |
C7—C8—C9—C10 | −39.6 (2) | C24—C7—C22—C11 | 176.34 (19) |
C7—C8—C9—C21 | −165.25 (18) | C24—C7—C22—C23 | −10.3 (3) |
C8—C7—C22—C11 | 52.3 (2) | C25—C4—C5—C6 | 23.1 (3) |
C8—C7—C22—C23 | −134.3 (2) | C25—C4—C5—C12 | −106.4 (2) |
C8—C9—C10—O4 | −150.80 (18) | C26—O7—C20—O6 | 0.2 (3) |
C8—C9—C10—C11 | 33.5 (2) | C26—O7—C20—C11 | −178.71 (17) |
C9—C10—C11—C12 | −106.49 (19) |
Experimental details
Crystal data | |
Chemical formula | C26H32O7 |
Mr | 456.51 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 9.1832 (6), 14.5805 (9), 17.5148 (11) |
V (Å3) | 2345.2 (3) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.77 |
Crystal size (mm) | 0.1 × 0.1 × 0.1 |
Data collection | |
Diffractometer | Bruker D8 Venture |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.646, 0.754 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 39170, 4814, 4533 |
Rint | 0.051 |
(sin θ/λ)max (Å−1) | 0.626 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.091, 1.06 |
No. of reflections | 4814 |
No. of parameters | 309 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.19 |
Absolute structure | Flack x determined using 1914 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
Absolute structure parameter | 0.07 (7) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL2014 (Sheldrick, 2015), OLEX2 (Dolomanov et al., 2009).
Acknowledgements
This work was supported by grants from the National Science Foundation (NSF)-MRI (CHE-1337908) and the National Institute of Health (NIH) NIGMS P20GM103546.
References
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The structure of berkeleydione, determined by detailed analysis of MS and NMR data has been reported (Stierle et al., 2004). The X-ray structure was also determined but the absolute configuration could not be determined from the MoKα data collected. The helicity rule of circular dichroism for cisoid homoannular dienes (Stierle et al., 2011) was applied to determine the absolute configuration of berkeleydione. The absolute configuration has now been determined by X-ray by refinement of the Flack parameter with data collected using CuKα radiation. This absolute configuration was shown to be the same as that determined with the helicity rule.