organic compounds
N-(pyridin-3-yl)propanamide
of 2,2-dimethyl-aCornea Research Chair, Department of Optometry, College of Applied Medical Sciences, King Saud University, PO Box 10219, Riyadh 11433, Saudi Arabia, and bSchool of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, Wales
*Correspondence e-mail: gelhiti@ksu.edu.sa, kariukib@cardiff.ac.uk
In the title compound, C10H14N2O, the pyridine ring is inclined to the mean plane of the amide moiety [N—C(=O)C] by 17.60 (8)°. There is an intramolecular C—H⋯O hydrogen bond present involving the carbonyl O atom. In the crystal, molecules are linked via N—H⋯N hydrogen bonds, forming chains propagating along [100]. The tert-butyl group is disordered over two sets of sites with a refined occupancy ratio of 0.758 (12):0.242 (12).
Keywords: crystal structure; pyridine; propanamide; N—H⋯N hydrogen bonds.
CCDC reference: 1054113
1. Related literature
For related biologically active pyridine derivatives, see: de Candia et al. (2013); Thorat et al. (2013); Abdel-Megeed et al. (2012). For pyridine ring-system modifications, see: El-Hiti et al. (2015); Smith et al. (2012, 2013); Londregan et al. (2009); Joule & Mills (2000); Turner (1983). For the crystal structures of related compounds, see: El-Hiti et al. (2014); Seidler et al. (2011); Koch et al. (2008); Mazik et al. (2004).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: CrysAlis PRO (Agilent, 2014); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).
Supporting information
CCDC reference: 1054113
10.1107/S2056989015005289/su5094sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015005289/su5094Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989015005289/su5094Isup3.cml
Pyridine derivatives are interesting compounds (Joule & Mills, 2000) since they show a range of biological activities (Thorat et al., 2013) such as anticoagulant (de Candia et al., 2013) and antimicrobial (Abdel-Megeed et al., 2012) properties. Various simple and efficient processes have been developed for modification of the pyridine ring system (El-Hiti et al., 2015; Smith et al., 2013, Smith et al., 2012, Londregan et al., 2009; Turner, 1983). The X-ray crystal structures of related compounds have been reported (El-Hiti et al., 2014; Seidler et al., 2011; Koch et al., 2008; Mazik et al., 2004).
The title compound was obtained in 73% yield from the reaction of 3-aminopyridine with pivaloyl chloride in the presence of triethylamine in dichloromethane at 273 K for 15 min and then at room temperature for 2 h (Turner, 1983). Crystallization from a mixture of ethyl acetate and hexane gave colourless crystals of the title compound. The spectroscopic and analytical data for the title compound were identical with those reported previously (Turner, 1983)
The N- and C-bound H atoms were included in calculated positions and refined as riding: N—H = 0.86 Å, C—H = 0.93 - 0.98 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(C) for other H atoms. The t-butyl group is disordered over two sites and was refined with bond length constraints to give a refined occupancy ratio of 0.758 (12):0.242 (12).
The molecular structure of the title compound is illustrated in Fig. 1. The pyridine ring is inclined to the mean plane of the amide moiety [N1—C6(═ O1)—C7] by 17.60 (8) °. There is an intramolecular C—H···O hydrogen bond present involving the carbonyl O atom (Table 1).
In the crystal, molecules are linked via N—H···N hydrogen bonds forming chains propagating along [100]; see Table 1 and Fig. 2.
Pyridine derivatives are interesting compounds (Joule & Mills, 2000) since they show a range of biological activities (Thorat et al., 2013) such as anticoagulant (de Candia et al., 2013) and antimicrobial (Abdel-Megeed et al., 2012) properties. Various simple and efficient processes have been developed for modification of the pyridine ring system (El-Hiti et al., 2015; Smith et al., 2013, Smith et al., 2012, Londregan et al., 2009; Turner, 1983). The X-ray crystal structures of related compounds have been reported (El-Hiti et al., 2014; Seidler et al., 2011; Koch et al., 2008; Mazik et al., 2004).
The title compound was obtained in 73% yield from the reaction of 3-aminopyridine with pivaloyl chloride in the presence of triethylamine in dichloromethane at 273 K for 15 min and then at room temperature for 2 h (Turner, 1983). Crystallization from a mixture of ethyl acetate and hexane gave colourless crystals of the title compound. The spectroscopic and analytical data for the title compound were identical with those reported previously (Turner, 1983)
The molecular structure of the title compound is illustrated in Fig. 1. The pyridine ring is inclined to the mean plane of the amide moiety [N1—C6(═ O1)—C7] by 17.60 (8) °. There is an intramolecular C—H···O hydrogen bond present involving the carbonyl O atom (Table 1).
In the crystal, molecules are linked via N—H···N hydrogen bonds forming chains propagating along [100]; see Table 1 and Fig. 2.
For related biologically active pyridine derivatives, see: de Candia et al. (2013); Thorat et al. (2013); Abdel-Megeed et al. (2012). For pyridine ring-system modifications, see: El-Hiti et al. (2015); Smith et al. (2012, 2013); Londregan et al. (2009); Joule & Mills (2000); Turner (1983). For the crystal structures of related compounds, see: El-Hiti et al. (2014); Seidler et al. (2011); Koch et al. (2008); Mazik et al. (2004).
detailsThe N- and C-bound H atoms were included in calculated positions and refined as riding: N—H = 0.86 Å, C—H = 0.93 - 0.98 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(C) for other H atoms. The t-butyl group is disordered over two sites and was refined with bond length constraints to give a refined occupancy ratio of 0.758 (12):0.242 (12).
Data collection: CrysAlis PRO (Agilent, 2014); cell
CrysAlis PRO (Agilent, 2014); data reduction: CrysAlis PRO (Agilent, 2014); program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).C10H14N2O | Dx = 1.141 Mg m−3 |
Mr = 178.23 | Cu Kα radiation, λ = 1.54184 Å |
Orthorhombic, Pbca | Cell parameters from 3061 reflections |
a = 11.2453 (3) Å | θ = 5.0–73.4° |
b = 10.5272 (3) Å | µ = 0.60 mm−1 |
c = 17.5339 (6) Å | T = 293 K |
V = 2075.69 (11) Å3 | Plate, colourless |
Z = 8 | 0.23 × 0.19 × 0.06 mm |
F(000) = 768 |
Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer | 2065 independent reflections |
Radiation source: sealed X-ray tube, SuperNova (Cu) X-ray Source | 1722 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.017 |
ω scans | θmax = 73.8°, θmin = 5.1° |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014) | h = −14→8 |
Tmin = 0.840, Tmax = 1.000 | k = −13→12 |
7164 measured reflections | l = −20→21 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.041 | w = 1/[σ2(Fo2) + (0.0688P)2 + 0.2387P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.127 | (Δ/σ)max < 0.001 |
S = 1.05 | Δρmax = 0.19 e Å−3 |
2065 reflections | Δρmin = −0.16 e Å−3 |
153 parameters | Extinction correction: SHELXL2013 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
114 restraints | Extinction coefficient: 0.0016 (4) |
C10H14N2O | V = 2075.69 (11) Å3 |
Mr = 178.23 | Z = 8 |
Orthorhombic, Pbca | Cu Kα radiation |
a = 11.2453 (3) Å | µ = 0.60 mm−1 |
b = 10.5272 (3) Å | T = 293 K |
c = 17.5339 (6) Å | 0.23 × 0.19 × 0.06 mm |
Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer | 2065 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014) | 1722 reflections with I > 2σ(I) |
Tmin = 0.840, Tmax = 1.000 | Rint = 0.017 |
7164 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 114 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.19 e Å−3 |
2065 reflections | Δρmin = −0.16 e Å−3 |
153 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.72804 (10) | 0.10403 (12) | 0.27358 (7) | 0.0490 (3) | |
C2 | 0.61380 (11) | 0.14128 (14) | 0.25328 (8) | 0.0585 (4) | |
H2 | 0.5822 | 0.2140 | 0.2756 | 0.070* | |
C3 | 0.59204 (13) | −0.02662 (15) | 0.17123 (8) | 0.0663 (4) | |
H3 | 0.5452 | −0.0722 | 0.1371 | 0.080* | |
C4 | 0.70473 (13) | −0.06915 (16) | 0.18680 (9) | 0.0702 (4) | |
H4 | 0.7344 | −0.1414 | 0.1630 | 0.084* | |
C5 | 0.77323 (12) | −0.00301 (14) | 0.23832 (8) | 0.0619 (4) | |
H5 | 0.8499 | −0.0303 | 0.2494 | 0.074* | |
C6 | 0.76123 (12) | 0.24951 (14) | 0.38234 (8) | 0.0585 (3) | |
C7 | 0.85629 (13) | 0.29549 (15) | 0.43884 (9) | 0.0671 (4) | |
C8 | 0.9594 (3) | 0.3605 (4) | 0.3935 (2) | 0.0798 (10) | 0.758 (12) |
H8A | 0.9277 | 0.4278 | 0.3627 | 0.120* | 0.758 (12) |
H8B | 0.9974 | 0.2988 | 0.3613 | 0.120* | 0.758 (12) |
H8C | 1.0165 | 0.3947 | 0.4287 | 0.120* | 0.758 (12) |
C9 | 0.9077 (5) | 0.1835 (4) | 0.4813 (4) | 0.0838 (11) | 0.758 (12) |
H9A | 0.9680 | 0.2125 | 0.5159 | 0.126* | 0.758 (12) |
H9B | 0.9421 | 0.1250 | 0.4455 | 0.126* | 0.758 (12) |
H9C | 0.8458 | 0.1417 | 0.5094 | 0.126* | 0.758 (12) |
C10 | 0.8023 (4) | 0.3941 (7) | 0.4916 (4) | 0.1205 (18) | 0.758 (12) |
H10A | 0.7365 | 0.3574 | 0.5186 | 0.181* | 0.758 (12) |
H10B | 0.7751 | 0.4653 | 0.4621 | 0.181* | 0.758 (12) |
H10C | 0.8613 | 0.4222 | 0.5274 | 0.181* | 0.758 (12) |
C8A | 0.9208 (16) | 0.4067 (14) | 0.4095 (8) | 0.108 (4) | 0.242 (12) |
H8D | 0.9534 | 0.3873 | 0.3602 | 0.162* | 0.242 (12) |
H8E | 0.9841 | 0.4281 | 0.4439 | 0.162* | 0.242 (12) |
H8F | 0.8672 | 0.4772 | 0.4052 | 0.162* | 0.242 (12) |
C9A | 0.9385 (16) | 0.1880 (15) | 0.4658 (11) | 0.089 (4) | 0.242 (12) |
H9D | 0.8920 | 0.1137 | 0.4766 | 0.133* | 0.242 (12) |
H9E | 0.9796 | 0.2142 | 0.5111 | 0.133* | 0.242 (12) |
H9F | 0.9953 | 0.1690 | 0.4265 | 0.133* | 0.242 (12) |
C10A | 0.7832 (11) | 0.3342 (17) | 0.5131 (6) | 0.098 (4) | 0.242 (12) |
H10D | 0.7211 | 0.3924 | 0.4993 | 0.147* | 0.242 (12) |
H10E | 0.8355 | 0.3739 | 0.5491 | 0.147* | 0.242 (12) |
H10F | 0.7488 | 0.2595 | 0.5355 | 0.147* | 0.242 (12) |
N1 | 0.79882 (8) | 0.16796 (11) | 0.32735 (6) | 0.0543 (3) | |
H1 | 0.8741 | 0.1539 | 0.3252 | 0.065* | |
N2 | 0.54740 (9) | 0.07752 (13) | 0.20320 (7) | 0.0650 (3) | |
O1 | 0.65818 (9) | 0.28385 (14) | 0.38687 (7) | 0.0885 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0369 (6) | 0.0624 (7) | 0.0478 (6) | 0.0007 (5) | 0.0006 (5) | 0.0031 (5) |
C2 | 0.0400 (6) | 0.0715 (8) | 0.0640 (7) | 0.0064 (6) | −0.0046 (5) | −0.0063 (6) |
C3 | 0.0529 (7) | 0.0841 (9) | 0.0617 (8) | −0.0037 (7) | −0.0065 (6) | −0.0111 (7) |
C4 | 0.0630 (9) | 0.0778 (9) | 0.0697 (9) | 0.0116 (7) | −0.0067 (7) | −0.0172 (7) |
C5 | 0.0450 (7) | 0.0766 (8) | 0.0641 (8) | 0.0130 (6) | −0.0051 (6) | −0.0078 (6) |
C6 | 0.0461 (7) | 0.0715 (8) | 0.0579 (7) | 0.0057 (6) | −0.0020 (6) | −0.0039 (6) |
C7 | 0.0620 (8) | 0.0739 (8) | 0.0653 (8) | −0.0024 (7) | −0.0092 (6) | −0.0103 (7) |
C8 | 0.0716 (17) | 0.0753 (17) | 0.0926 (19) | −0.0182 (13) | −0.0135 (13) | 0.0017 (14) |
C9 | 0.089 (3) | 0.101 (2) | 0.062 (2) | −0.0202 (16) | −0.0235 (18) | 0.0146 (16) |
C10 | 0.098 (2) | 0.134 (4) | 0.129 (4) | −0.002 (3) | −0.004 (2) | −0.073 (3) |
C8A | 0.129 (8) | 0.107 (7) | 0.087 (6) | −0.026 (6) | −0.027 (6) | 0.000 (6) |
C9A | 0.080 (7) | 0.116 (7) | 0.071 (7) | 0.008 (6) | −0.023 (5) | −0.011 (5) |
C10A | 0.102 (6) | 0.115 (8) | 0.076 (5) | 0.013 (6) | −0.026 (4) | −0.046 (5) |
N1 | 0.0341 (5) | 0.0708 (7) | 0.0581 (6) | 0.0041 (4) | −0.0035 (4) | −0.0056 (5) |
N2 | 0.0408 (6) | 0.0867 (8) | 0.0676 (7) | 0.0032 (5) | −0.0078 (5) | −0.0079 (6) |
O1 | 0.0543 (6) | 0.1273 (10) | 0.0838 (8) | 0.0235 (6) | −0.0048 (5) | −0.0356 (7) |
C1—C5 | 1.3820 (19) | C8—H8A | 0.9600 |
C1—C2 | 1.3895 (17) | C8—H8B | 0.9600 |
C1—N1 | 1.4054 (16) | C8—H8C | 0.9600 |
C2—N2 | 1.3339 (18) | C9—H9A | 0.9600 |
C2—H2 | 0.9300 | C9—H9B | 0.9600 |
C3—N2 | 1.3297 (19) | C9—H9C | 0.9600 |
C3—C4 | 1.372 (2) | C10—H10A | 0.9600 |
C3—H3 | 0.9300 | C10—H10B | 0.9600 |
C4—C5 | 1.376 (2) | C10—H10C | 0.9600 |
C4—H4 | 0.9300 | C8A—H8D | 0.9600 |
C5—H5 | 0.9300 | C8A—H8E | 0.9600 |
C6—O1 | 1.2165 (17) | C8A—H8F | 0.9600 |
C6—N1 | 1.3585 (17) | C9A—H9D | 0.9600 |
C6—C7 | 1.5356 (19) | C9A—H9E | 0.9600 |
C7—C8A | 1.470 (7) | C9A—H9F | 0.9600 |
C7—C9 | 1.510 (4) | C10A—H10D | 0.9600 |
C7—C10 | 1.517 (4) | C10A—H10E | 0.9600 |
C7—C9A | 1.536 (8) | C10A—H10F | 0.9600 |
C7—C8 | 1.563 (3) | N1—H1 | 0.8600 |
C7—C10A | 1.593 (7) | ||
C5—C1—C2 | 117.09 (12) | H8B—C8—H8C | 109.5 |
C5—C1—N1 | 118.83 (10) | C7—C9—H9A | 109.5 |
C2—C1—N1 | 124.07 (11) | C7—C9—H9B | 109.5 |
N2—C2—C1 | 122.97 (12) | H9A—C9—H9B | 109.5 |
N2—C2—H2 | 118.5 | C7—C9—H9C | 109.5 |
C1—C2—H2 | 118.5 | H9A—C9—H9C | 109.5 |
N2—C3—C4 | 122.28 (13) | H9B—C9—H9C | 109.5 |
N2—C3—H3 | 118.9 | C7—C10—H10A | 109.5 |
C4—C3—H3 | 118.9 | C7—C10—H10B | 109.5 |
C3—C4—C5 | 118.86 (14) | H10A—C10—H10B | 109.5 |
C3—C4—H4 | 120.6 | C7—C10—H10C | 109.5 |
C5—C4—H4 | 120.6 | H10A—C10—H10C | 109.5 |
C4—C5—C1 | 120.02 (12) | H10B—C10—H10C | 109.5 |
C4—C5—H5 | 120.0 | C7—C8A—H8D | 109.5 |
C1—C5—H5 | 120.0 | C7—C8A—H8E | 109.5 |
O1—C6—N1 | 122.04 (13) | H8D—C8A—H8E | 109.5 |
O1—C6—C7 | 121.83 (13) | C7—C8A—H8F | 109.5 |
N1—C6—C7 | 116.13 (11) | H8D—C8A—H8F | 109.5 |
C9—C7—C10 | 112.8 (3) | H8E—C8A—H8F | 109.5 |
C8A—C7—C6 | 111.6 (5) | C7—C9A—H9D | 109.5 |
C9—C7—C6 | 109.8 (3) | C7—C9A—H9E | 109.5 |
C10—C7—C6 | 109.3 (2) | H9D—C9A—H9E | 109.5 |
C8A—C7—C9A | 113.4 (7) | C7—C9A—H9F | 109.5 |
C6—C7—C9A | 112.7 (9) | H9D—C9A—H9F | 109.5 |
C9—C7—C8 | 107.9 (2) | H9E—C9A—H9F | 109.5 |
C10—C7—C8 | 107.9 (2) | C7—C10A—H10D | 109.5 |
C6—C7—C8 | 109.05 (17) | C7—C10A—H10E | 109.5 |
C8A—C7—C10A | 109.7 (5) | H10D—C10A—H10E | 109.5 |
C6—C7—C10A | 104.4 (5) | C7—C10A—H10F | 109.5 |
C9A—C7—C10A | 104.3 (6) | H10D—C10A—H10F | 109.5 |
C7—C8—H8A | 109.5 | H10E—C10A—H10F | 109.5 |
C7—C8—H8B | 109.5 | C6—N1—C1 | 127.05 (10) |
H8A—C8—H8B | 109.5 | C6—N1—H1 | 116.5 |
C7—C8—H8C | 109.5 | C1—N1—H1 | 116.5 |
H8A—C8—H8C | 109.5 | C3—N2—C2 | 118.76 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O1 | 0.93 | 2.25 | 2.8263 (18) | 119 |
N1—H1···N2i | 0.86 | 2.17 | 3.0012 (15) | 164 |
Symmetry code: (i) x+1/2, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O1 | 0.93 | 2.25 | 2.8263 (18) | 119 |
N1—H1···N2i | 0.86 | 2.17 | 3.0012 (15) | 164 |
Symmetry code: (i) x+1/2, y, −z+1/2. |
Acknowledgements
The authors extend their appreciation to the Cornea Research Chair, Department of Optometry, College of Applied Medical Sciences, King Saud University, for funding this research, and to Cardiff University for continued support.
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