organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

Crystal structure of p-toluene­sulfonyl­methyl isocyanide

aH. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan
*Correspondence e-mail: dr.sammer.yousuf@gmail.com

Edited by C. Rizzoli, Universita degli Studi di Parma, Italy (Received 29 April 2015; accepted 6 May 2015; online 20 May 2015)

The mol­ecule of the commercially available title compound, C9H9NO2S, has crystallographically imposed mirror symmetry, the mirror plane passing through the isocyanide group and the para-C atoms, the methyl C atom and the S atom of the methyl 4-tolyl sulfone moiety. In the crystal, C—H⋯O hydrogen-bond inter­actions link the mol­ecules into chains running parallel to the b axis.

1. Related literature

The title compound is an isocyanide derivative of methyl 4-tolyl sulfone (Ye, 2007[Ye, Y.-Y. (2007). Acta Cryst. E63, o2652.]), an important reaction inter­mediate obtained during the synthesis of mesotrione, a well known herbicide (Smith et al., 2008[Smith, K., Evan, D. A. & El-Hitj, G. A. (2008). Philos. Trans. R. Soc. London Ser. A, 363, 623-637.]).

[Scheme 1]

2. Experimental

2.1. Crystal data

  • C9H9NO2S

  • Mr = 195.23

  • Orthorhombic, P n m a

  • a = 22.342 (5) Å

  • b = 8.881 (2) Å

  • c = 4.8462 (12) Å

  • V = 961.6 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.30 mm−1

  • T = 273 K

  • 0.49 × 0.32 × 0.15 mm

2.2. Data collection

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000[Bruker (2000). SADABS, SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]) Tmin = 0.864, Tmax = 0.961

  • 5160 measured reflections

  • 955 independent reflections

  • 733 reflections with I > 2σ(I)

  • Rint = 0.044

2.3. Refinement

  • R[F2 > 2σ(F2)] = 0.047

  • wR(F2) = 0.119

  • S = 1.11

  • 955 reflections

  • 77 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.39 e Å−3

  • Δρmin = −0.19 e Å−3

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
C6—H6A⋯O1i 0.97 2.47 3.2519 (18) 138
C6—H6A⋯O1ii 0.97 2.54 3.296 (4) 135
C6—H6B⋯O1iii 0.97 2.54 3.296 (4) 135
C6—H6B⋯O1iv 0.97 2.47 3.2519 (18) 138
Symmetry codes: (i) [-x+{\script{1\over 2}}, y+{\script{1\over 2}}, z-{\script{1\over 2}}]; (ii) [x, -y+{\script{1\over 2}}, z-1]; (iii) x, y, z-1; (iv) [-x+{\script{1\over 2}}, -y, z-{\script{1\over 2}}].

Data collection: SMART (Bruker, 2000[Bruker (2000). SADABS, SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]); cell refinement: SAINT (Bruker, 2000[Bruker (2000). SADABS, SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995[Nardelli, M. (1995). J. Appl. Cryst. 28, 659.]) and PLATON (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]).

Supporting information


Comment top

The title compound is an isocyanide derivative of the previously reported compound methyl 4-tolyl sulfone (Ye, 2007), an important reaction intermediate obtained during the synthesis of mesotrione, a well known herbicide (Smith et al., 2008). The compound was crystallized as part of our ongoing research project involving the study of the crystal structures and enzyme inhibition abilities of commercially available molecular libraries. The molecule has crystallographically imposed mirror symmetry, atoms C1, C4–C7, N1, S1 lying on the mirror plane (Fig. 1). The least-square mean line through C6, N1 and C7 forms an angle of 79.4 (3)° with the normal to the plane of the benzene ring. The crystal structure is stabilized by C6—H6A···O1, and C6—H6B···O1 intermolecular hydrogen interactions that link the molecules to form chains running parallel to the b axis (Fig. 2).

Related literature top

The title compound is an isocyanide derivative of methyl 4-tolyl sulfone (Ye, 2007), an important reaction intermediate obtained during the synthesis of mesotrione, a well known herbicide (Smith et al., 2008).

Experimental top

The title compound is a commercially available Sigma-Aldrich product. Colourless single crystals suitable for X-ray analysis were obtained from slow evaporation of a methanol solution at room temperature.

Refinement top

Aromatic and methylene H atoms were positioned geometrically and constrained to ride on their parent atoms, with C—H = 0.93-0.97 Å, and with Uiso(H)= 1.2Ueq(C). The methyl H5A atom lying on a mirror plane was located in a difference Fourier map and refined isotropically, with the C5–H5A bond length constrained to be 1.1 (1) Å.

Computing details top

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), PARST (Nardelli, 1995) and PLATON (Spek, 2009).

Figures top
[Figure 1] Fig. 1. The molecular structure of title compound with displacement ellipsoids drawn at the 30% probability level.
[Figure 2] Fig. 2. Crystal packing of the title compound, showing the formation of chains parallel to the b axis via C—H···O hydrogen bonds (dashed lines). H atoms not involved in hydrogen bonding are omitted.
p-Toluenesulfonylmethyl isocyanide top
Crystal data top
C9H9NO2SF(000) = 408
Mr = 195.23Dx = 1.349 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 830 reflections
a = 22.342 (5) Åθ = 2.9–22.3°
b = 8.881 (2) ŵ = 0.30 mm1
c = 4.8462 (12) ÅT = 273 K
V = 961.6 (4) Å3Plate, colourless
Z = 40.49 × 0.32 × 0.15 mm
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
955 independent reflections
Radiation source: fine-focus sealed tube733 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
ω scanθmax = 25.5°, θmin = 1.8°
Absorption correction: multi-scan
(SADABS; Bruker, 2000)
h = 2725
Tmin = 0.864, Tmax = 0.961k = 1010
5160 measured reflectionsl = 55
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.11 w = 1/[σ2(Fo2) + (0.0557P)2 + 0.1844P]
where P = (Fo2 + 2Fc2)/3
955 reflections(Δ/σ)max < 0.001
77 parametersΔρmax = 0.39 e Å3
1 restraintΔρmin = 0.19 e Å3
Crystal data top
C9H9NO2SV = 961.6 (4) Å3
Mr = 195.23Z = 4
Orthorhombic, PnmaMo Kα radiation
a = 22.342 (5) ŵ = 0.30 mm1
b = 8.881 (2) ÅT = 273 K
c = 4.8462 (12) Å0.49 × 0.32 × 0.15 mm
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
955 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2000)
733 reflections with I > 2σ(I)
Tmin = 0.864, Tmax = 0.961Rint = 0.044
5160 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0471 restraint
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.11Δρmax = 0.39 e Å3
955 reflectionsΔρmin = 0.19 e Å3
77 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
S10.28836 (4)0.25000.85946 (16)0.0354 (3)
O10.28301 (8)0.11111 (18)1.0084 (3)0.0462 (5)
N10.17475 (16)0.25000.7198 (6)0.0483 (8)
C10.35416 (16)0.25000.6642 (7)0.0379 (9)
C20.37872 (13)0.1154 (3)0.5815 (6)0.0488 (7)
H2A0.36240.02460.63980.059*
C30.42793 (13)0.1177 (3)0.4109 (6)0.0557 (8)
H3A0.44460.02680.35430.067*
C40.45334 (18)0.25000.3212 (7)0.0477 (10)
C50.5064 (2)0.25000.1335 (11)0.0714 (16)
H5B0.505 (2)0.320 (5)0.013 (11)0.14 (2)*
C60.23235 (16)0.25000.5941 (7)0.0383 (9)
H6A0.23690.33850.47880.046*0.50
H6B0.23690.16150.47880.046*0.50
C70.1292 (2)0.25000.8320 (11)0.0707 (14)
H5A0.549 (2)0.25000.242 (17)0.21 (4)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S10.0508 (6)0.0300 (5)0.0255 (4)0.0000.0031 (4)0.000
O10.0676 (13)0.0360 (10)0.0349 (10)0.0001 (9)0.0045 (9)0.0096 (7)
N10.051 (2)0.0469 (19)0.0467 (18)0.0000.0048 (17)0.000
C10.044 (2)0.0368 (19)0.0330 (18)0.0000.0023 (16)0.000
C20.0551 (18)0.0383 (15)0.0531 (15)0.0007 (13)0.0084 (14)0.0045 (12)
C30.0549 (19)0.0551 (18)0.0572 (18)0.0105 (15)0.0053 (15)0.0108 (15)
C40.040 (2)0.065 (3)0.039 (2)0.0000.0021 (17)0.000
C50.055 (3)0.104 (5)0.056 (3)0.0000.012 (3)0.000
C60.051 (2)0.0355 (18)0.0288 (17)0.0000.0018 (16)0.000
C70.066 (3)0.059 (3)0.087 (4)0.0000.008 (3)0.000
Geometric parameters (Å, º) top
S1—O1i1.4340 (16)C2—H2A0.9300
S1—O11.4341 (16)C3—C41.375 (4)
S1—C11.748 (4)C3—H3A0.9300
S1—C61.794 (4)C4—C3i1.375 (4)
N1—C71.154 (5)C4—C51.494 (6)
N1—C61.424 (5)C5—H5B0.85 (5)
C1—C2i1.375 (3)C5—H5A1.095 (10)
C1—C21.375 (3)C6—H6A0.9700
C2—C31.376 (4)C6—H6B0.9700
O1i—S1—O1118.66 (14)C4—C3—H3A118.9
O1i—S1—C1110.03 (9)C2—C3—H3A118.9
O1—S1—C1110.03 (9)C3—C4—C3i117.3 (4)
O1i—S1—C6107.61 (10)C3—C4—C5121.33 (18)
O1—S1—C6107.61 (10)C3i—C4—C5121.33 (18)
C1—S1—C6101.45 (16)C4—C5—H5B113 (3)
C7—N1—C6177.2 (4)C4—C5—H5A114 (5)
C2i—C1—C2120.8 (3)H5B—C5—H5A111 (4)
C2i—C1—S1119.56 (18)N1—C6—S1108.9 (2)
C2—C1—S1119.56 (18)N1—C6—H6A109.9
C1—C2—C3118.8 (3)S1—C6—H6A109.9
C1—C2—H2A120.6N1—C6—H6B109.9
C3—C2—H2A120.6S1—C6—H6B109.9
C4—C3—C2122.2 (3)H6A—C6—H6B108.3
O1i—S1—C1—C2i25.6 (3)S1—C1—C2—C3175.2 (2)
O1—S1—C1—C2i158.2 (2)C1—C2—C3—C40.2 (5)
C6—S1—C1—C2i88.1 (3)C2—C3—C4—C3i0.6 (6)
O1i—S1—C1—C2158.2 (2)C2—C3—C4—C5179.3 (4)
O1—S1—C1—C225.6 (3)O1i—S1—C6—N164.47 (9)
C6—S1—C1—C288.1 (3)O1—S1—C6—N164.47 (9)
C2i—C1—C2—C30.9 (6)C1—S1—C6—N1180.0
Symmetry code: (i) x, y+1/2, z.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C6—H6A···O1ii0.972.473.2519 (18)138
C6—H6A···O1iii0.972.543.296 (4)135
C6—H6B···O1iv0.972.543.296 (4)135
C6—H6B···O1v0.972.473.2519 (18)138
Symmetry codes: (ii) x+1/2, y+1/2, z1/2; (iii) x, y+1/2, z1; (iv) x, y, z1; (v) x+1/2, y, z1/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C6—H6A···O1i0.972.473.2519 (18)138.0
C6—H6A···O1ii0.972.543.296 (4)134.6
C6—H6B···O1iii0.972.543.296 (4)134.6
C6—H6B···O1iv0.972.473.2519 (18)138.0
Symmetry codes: (i) x+1/2, y+1/2, z1/2; (ii) x, y+1/2, z1; (iii) x, y, z1; (iv) x+1/2, y, z1/2.
 

Acknowledgements

The authors acknowledge the financial support of the Higher Education Commission of Pakistan (HEC) through the research project entitled `Structural studies of new inhibitors of urease enzyme – an approach towards the treatment of gastric ulcer, urolitheasis and other complications'.

References

First citationBruker (2000). SADABS, SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.  Google Scholar
First citationNardelli, M. (1995). J. Appl. Cryst. 28, 659.  CrossRef IUCr Journals Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSmith, K., Evan, D. A. & El-Hitj, G. A. (2008). Philos. Trans. R. Soc. London Ser. A, 363, 623–637.  CrossRef CAS Google Scholar
First citationSpek, A. L. (2009). Acta Cryst. D65, 148–155.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationYe, Y.-Y. (2007). Acta Cryst. E63, o2652.  CSD CrossRef IUCr Journals Google Scholar

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