organic compounds
p-toluenesulfonylmethyl isocyanide
ofaH. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan
*Correspondence e-mail: dr.sammer.yousuf@gmail.com
The molecule of the commercially available title compound, C9H9NO2S, has crystallographically imposed mirror symmetry, the mirror plane passing through the isocyanide group and the para-C atoms, the methyl C atom and the S atom of the methyl 4-tolyl sulfone moiety. In the crystal, C—H⋯O hydrogen-bond interactions link the molecules into chains running parallel to the b axis.
Keywords: crystal structure; isocyanide derivative; hydrogen bonding.
CCDC reference: 1063415
1. Related literature
The title compound is an isocyanide derivative of methyl 4-tolyl sulfone (Ye, 2007), an important reaction intermediate obtained during the synthesis of mesotrione, a well known herbicide (Smith et al., 2008).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2009).
Supporting information
CCDC reference: 1063415
10.1107/S2056989015008816/rz5158sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015008816/rz5158Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989015008816/rz5158Isup3.cml
The title compound is a commercially available Sigma-Aldrich product. Colourless single crystals suitable for X-ray analysis were obtained from slow evaporation of a methanol solution at room temperature.
Aromatic and methylene H atoms were positioned geometrically and constrained to ride on their parent atoms, with C—H = 0.93-0.97 Å, and with Uiso(H)= 1.2Ueq(C). The methyl H5A atom lying on a mirror plane was located in a difference Fourier map and refined isotropically, with the C5–H5A bond length constrained to be 1.1 (1) Å.
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), PARST (Nardelli, 1995) and PLATON (Spek, 2009).Fig. 1. The molecular structure of title compound with displacement ellipsoids drawn at the 30% probability level. | |
Fig. 2. Crystal packing of the title compound, showing the formation of chains parallel to the b axis via C—H···O hydrogen bonds (dashed lines). H atoms not involved in hydrogen bonding are omitted. |
C9H9NO2S | F(000) = 408 |
Mr = 195.23 | Dx = 1.349 Mg m−3 |
Orthorhombic, Pnma | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2n | Cell parameters from 830 reflections |
a = 22.342 (5) Å | θ = 2.9–22.3° |
b = 8.881 (2) Å | µ = 0.30 mm−1 |
c = 4.8462 (12) Å | T = 273 K |
V = 961.6 (4) Å3 | Plate, colourless |
Z = 4 | 0.49 × 0.32 × 0.15 mm |
Bruker SMART APEX CCD area-detector diffractometer | 955 independent reflections |
Radiation source: fine-focus sealed tube | 733 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.044 |
ω scan | θmax = 25.5°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −27→25 |
Tmin = 0.864, Tmax = 0.961 | k = −10→10 |
5160 measured reflections | l = −5→5 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0557P)2 + 0.1844P] where P = (Fo2 + 2Fc2)/3 |
955 reflections | (Δ/σ)max < 0.001 |
77 parameters | Δρmax = 0.39 e Å−3 |
1 restraint | Δρmin = −0.19 e Å−3 |
C9H9NO2S | V = 961.6 (4) Å3 |
Mr = 195.23 | Z = 4 |
Orthorhombic, Pnma | Mo Kα radiation |
a = 22.342 (5) Å | µ = 0.30 mm−1 |
b = 8.881 (2) Å | T = 273 K |
c = 4.8462 (12) Å | 0.49 × 0.32 × 0.15 mm |
Bruker SMART APEX CCD area-detector diffractometer | 955 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 733 reflections with I > 2σ(I) |
Tmin = 0.864, Tmax = 0.961 | Rint = 0.044 |
5160 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 1 restraint |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.39 e Å−3 |
955 reflections | Δρmin = −0.19 e Å−3 |
77 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.28836 (4) | 0.2500 | 0.85946 (16) | 0.0354 (3) | |
O1 | 0.28301 (8) | 0.11111 (18) | 1.0084 (3) | 0.0462 (5) | |
N1 | 0.17475 (16) | 0.2500 | 0.7198 (6) | 0.0483 (8) | |
C1 | 0.35416 (16) | 0.2500 | 0.6642 (7) | 0.0379 (9) | |
C2 | 0.37872 (13) | 0.1154 (3) | 0.5815 (6) | 0.0488 (7) | |
H2A | 0.3624 | 0.0246 | 0.6398 | 0.059* | |
C3 | 0.42793 (13) | 0.1177 (3) | 0.4109 (6) | 0.0557 (8) | |
H3A | 0.4446 | 0.0268 | 0.3543 | 0.067* | |
C4 | 0.45334 (18) | 0.2500 | 0.3212 (7) | 0.0477 (10) | |
C5 | 0.5064 (2) | 0.2500 | 0.1335 (11) | 0.0714 (16) | |
H5B | 0.505 (2) | 0.320 (5) | 0.013 (11) | 0.14 (2)* | |
C6 | 0.23235 (16) | 0.2500 | 0.5941 (7) | 0.0383 (9) | |
H6A | 0.2369 | 0.3385 | 0.4788 | 0.046* | 0.50 |
H6B | 0.2369 | 0.1615 | 0.4788 | 0.046* | 0.50 |
C7 | 0.1292 (2) | 0.2500 | 0.8320 (11) | 0.0707 (14) | |
H5A | 0.549 (2) | 0.2500 | 0.242 (17) | 0.21 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0508 (6) | 0.0300 (5) | 0.0255 (4) | 0.000 | 0.0031 (4) | 0.000 |
O1 | 0.0676 (13) | 0.0360 (10) | 0.0349 (10) | 0.0001 (9) | 0.0045 (9) | 0.0096 (7) |
N1 | 0.051 (2) | 0.0469 (19) | 0.0467 (18) | 0.000 | 0.0048 (17) | 0.000 |
C1 | 0.044 (2) | 0.0368 (19) | 0.0330 (18) | 0.000 | −0.0023 (16) | 0.000 |
C2 | 0.0551 (18) | 0.0383 (15) | 0.0531 (15) | −0.0007 (13) | 0.0084 (14) | −0.0045 (12) |
C3 | 0.0549 (19) | 0.0551 (18) | 0.0572 (18) | 0.0105 (15) | 0.0053 (15) | −0.0108 (15) |
C4 | 0.040 (2) | 0.065 (3) | 0.039 (2) | 0.000 | −0.0021 (17) | 0.000 |
C5 | 0.055 (3) | 0.104 (5) | 0.056 (3) | 0.000 | 0.012 (3) | 0.000 |
C6 | 0.051 (2) | 0.0355 (18) | 0.0288 (17) | 0.000 | 0.0018 (16) | 0.000 |
C7 | 0.066 (3) | 0.059 (3) | 0.087 (4) | 0.000 | 0.008 (3) | 0.000 |
S1—O1i | 1.4340 (16) | C2—H2A | 0.9300 |
S1—O1 | 1.4341 (16) | C3—C4 | 1.375 (4) |
S1—C1 | 1.748 (4) | C3—H3A | 0.9300 |
S1—C6 | 1.794 (4) | C4—C3i | 1.375 (4) |
N1—C7 | 1.154 (5) | C4—C5 | 1.494 (6) |
N1—C6 | 1.424 (5) | C5—H5B | 0.85 (5) |
C1—C2i | 1.375 (3) | C5—H5A | 1.095 (10) |
C1—C2 | 1.375 (3) | C6—H6A | 0.9700 |
C2—C3 | 1.376 (4) | C6—H6B | 0.9700 |
O1i—S1—O1 | 118.66 (14) | C4—C3—H3A | 118.9 |
O1i—S1—C1 | 110.03 (9) | C2—C3—H3A | 118.9 |
O1—S1—C1 | 110.03 (9) | C3—C4—C3i | 117.3 (4) |
O1i—S1—C6 | 107.61 (10) | C3—C4—C5 | 121.33 (18) |
O1—S1—C6 | 107.61 (10) | C3i—C4—C5 | 121.33 (18) |
C1—S1—C6 | 101.45 (16) | C4—C5—H5B | 113 (3) |
C7—N1—C6 | 177.2 (4) | C4—C5—H5A | 114 (5) |
C2i—C1—C2 | 120.8 (3) | H5B—C5—H5A | 111 (4) |
C2i—C1—S1 | 119.56 (18) | N1—C6—S1 | 108.9 (2) |
C2—C1—S1 | 119.56 (18) | N1—C6—H6A | 109.9 |
C1—C2—C3 | 118.8 (3) | S1—C6—H6A | 109.9 |
C1—C2—H2A | 120.6 | N1—C6—H6B | 109.9 |
C3—C2—H2A | 120.6 | S1—C6—H6B | 109.9 |
C4—C3—C2 | 122.2 (3) | H6A—C6—H6B | 108.3 |
O1i—S1—C1—C2i | −25.6 (3) | S1—C1—C2—C3 | 175.2 (2) |
O1—S1—C1—C2i | −158.2 (2) | C1—C2—C3—C4 | 0.2 (5) |
C6—S1—C1—C2i | 88.1 (3) | C2—C3—C4—C3i | 0.6 (6) |
O1i—S1—C1—C2 | 158.2 (2) | C2—C3—C4—C5 | −179.3 (4) |
O1—S1—C1—C2 | 25.6 (3) | O1i—S1—C6—N1 | −64.47 (9) |
C6—S1—C1—C2 | −88.1 (3) | O1—S1—C6—N1 | 64.47 (9) |
C2i—C1—C2—C3 | −0.9 (6) | C1—S1—C6—N1 | 180.0 |
Symmetry code: (i) x, −y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6A···O1ii | 0.97 | 2.47 | 3.2519 (18) | 138 |
C6—H6A···O1iii | 0.97 | 2.54 | 3.296 (4) | 135 |
C6—H6B···O1iv | 0.97 | 2.54 | 3.296 (4) | 135 |
C6—H6B···O1v | 0.97 | 2.47 | 3.2519 (18) | 138 |
Symmetry codes: (ii) −x+1/2, y+1/2, z−1/2; (iii) x, −y+1/2, z−1; (iv) x, y, z−1; (v) −x+1/2, −y, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6A···O1i | 0.97 | 2.47 | 3.2519 (18) | 138.0 |
C6—H6A···O1ii | 0.97 | 2.54 | 3.296 (4) | 134.6 |
C6—H6B···O1iii | 0.97 | 2.54 | 3.296 (4) | 134.6 |
C6—H6B···O1iv | 0.97 | 2.47 | 3.2519 (18) | 138.0 |
Symmetry codes: (i) −x+1/2, y+1/2, z−1/2; (ii) x, −y+1/2, z−1; (iii) x, y, z−1; (iv) −x+1/2, −y, z−1/2. |
Acknowledgements
The authors acknowledge the financial support of the Higher Education Commission of Pakistan (HEC) through the research project entitled `Structural studies of new inhibitors of urease enzyme – an approach towards the treatment of gastric ulcer, urolitheasis and other complications'.
References
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The title compound is an isocyanide derivative of the previously reported compound methyl 4-tolyl sulfone (Ye, 2007), an important reaction intermediate obtained during the synthesis of mesotrione, a well known herbicide (Smith et al., 2008). The compound was crystallized as part of our ongoing research project involving the study of the crystal structures and enzyme inhibition abilities of commercially available molecular libraries. The molecule has crystallographically imposed mirror symmetry, atoms C1, C4–C7, N1, S1 lying on the mirror plane (Fig. 1). The least-square mean line through C6, N1 and C7 forms an angle of 79.4 (3)° with the normal to the plane of the benzene ring. The crystal structure is stabilized by C6—H6A···O1, and C6—H6B···O1 intermolecular hydrogen interactions that link the molecules to form chains running parallel to the b axis (Fig. 2).