organic compounds
of 2-diazoimidazole-4,5-dicarbonitrile
aCBMSE, Code 6910, Naval Research Laboratory, Washington, DC 20375, USA, and bPO Box 1663 MS C920, Los Alamos National Laboratory, Los Alamos, NM 87545, USA
*Correspondence e-mail: philipl@lanl.gov
In the title compound, C5N6, all the atoms are approximately coplanar. In the crystal, molecules are packed with short contact distances of 2.885 (2) (between the diazo N atom connected to the ring and a cyano N atom on a neighboring molecule) and 3.012 (2) Å (between the terminal diazo N atom and an N atom of a neighboring imidazole ring).
Keywords: crystal structure; diazo; imidazole; carbonitrile.
CCDC reference: 1056377
1. Related literature
For synthesis of the title compound, see: Lu & Just (2001); Sheppard & Webster (1973). Few diazo-containing molecules have been isolated, and of these, only a small number have been examined by X-ray diffraction, see: Daidone et al. (2005); Dippold et al. (2012). The majority of these compounds are found as diazonium ions, rather than the neutral diazo species, see: Bugg et al. (1964).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: APEX2 (Bruker, 2009); cell APEX2 and SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009) and XPREP (Bruker, 2008); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: CHEMDRAW Ultra (Cambridge Soft, 2014).
Supporting information
CCDC reference: 1056377
10.1107/S2056989015010944/cq2016sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015010944/cq2016Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989015010944/cq2016Isup3.cdx
Supporting information file. DOI: 10.1107/S2056989015010944/cq2016Isup4.cml
Caution! This compound can explode from slight friction, impact, or thermal shock. Although the explosion is not powerful, it is recommended that this material is only prepared in less than 5 gram quantities, handled wet, and not confined in any way.
The title compound was prepared by the literature method (Lu and Just, 2001). Crystals were obtained by slow evaporation of a dilute aqueous solution of the title compound.
The
initially refined to 0.3 (5). Before the final cycle, this parameter was reset to zero and the Friedel pairs merged.Data collection: APEX2 (Bruker, 2009); cell
APEX2 and SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009) and XPREP (Bruker, 2008); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: CHEMDRAW Ultra (Cambridge Soft, 2014).C5N6 | Dx = 1.520 Mg m−3 |
Mr = 144.11 | Melting point: 413 K (expl.) K |
Trigonal, P3221 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.0746 (3) Å | µ = 0.11 mm−1 |
c = 16.7315 (6) Å | T = 150 K |
V = 944.73 (8) Å3 | Plate, purple |
Z = 6 | 0.37 × 0.30 × 0.08 mm |
F(000) = 432 |
Bruker SMART APEXII CCD diffractometer | 1269 reflections with I > 2σ(I) |
Radiation source: fine focus sealed tube | Rint = 0.019 |
ω scans | θmax = 26.4°, θmin = 3.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −10→10 |
Tmin = 0.930, Tmax = 0.991 | k = −10→10 |
9178 measured reflections | l = −20→20 |
1289 independent reflections |
Refinement on F2 | 100 parameters |
Least-squares matrix: full | 0 restraints |
R[F2 > 2σ(F2)] = 0.021 | w = 1/[σ2(Fo2) + (0.0333P)2 + 0.1041P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.058 | (Δ/σ)max = 0.001 |
S = 1.09 | Δρmax = 0.14 e Å−3 |
1289 reflections | Δρmin = −0.11 e Å−3 |
C5N6 | Z = 6 |
Mr = 144.11 | Mo Kα radiation |
Trigonal, P3221 | µ = 0.11 mm−1 |
a = 8.0746 (3) Å | T = 150 K |
c = 16.7315 (6) Å | 0.37 × 0.30 × 0.08 mm |
V = 944.73 (8) Å3 |
Bruker SMART APEXII CCD diffractometer | 1289 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 1269 reflections with I > 2σ(I) |
Tmin = 0.930, Tmax = 0.991 | Rint = 0.019 |
9178 measured reflections |
R[F2 > 2σ(F2)] = 0.021 | 100 parameters |
wR(F2) = 0.058 | 0 restraints |
S = 1.09 | Δρmax = 0.14 e Å−3 |
1289 reflections | Δρmin = −0.11 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.61645 (16) | 0.00825 (16) | 0.93835 (6) | 0.0254 (3) | |
C2 | 0.7396 (2) | 0.16549 (19) | 0.89882 (7) | 0.0226 (3) | |
N3 | 0.91448 (16) | 0.28157 (17) | 0.92732 (6) | 0.0239 (3) | |
C4 | 0.90565 (19) | 0.18858 (19) | 0.99570 (7) | 0.0225 (3) | |
C5 | 0.72502 (19) | 0.02197 (19) | 1.00215 (7) | 0.0240 (3) | |
N6 | 0.68567 (16) | 0.20682 (16) | 0.82574 (6) | 0.0238 (3) | |
N7 | 0.6461 (2) | 0.23873 (19) | 0.76756 (7) | 0.0329 (3) | |
C8 | 1.0629 (2) | 0.2582 (2) | 1.05016 (7) | 0.0258 (3) | |
N9 | 1.18839 (19) | 0.3094 (2) | 1.09341 (7) | 0.0351 (3) | |
C10 | 0.6572 (2) | −0.1202 (2) | 1.06366 (8) | 0.0299 (3) | |
N11 | 0.6055 (2) | −0.2345 (2) | 1.11254 (8) | 0.0441 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0235 (6) | 0.0266 (6) | 0.0250 (5) | 0.0117 (5) | −0.0016 (4) | −0.0005 (5) |
C2 | 0.0241 (6) | 0.0255 (6) | 0.0200 (5) | 0.0138 (5) | −0.0021 (5) | −0.0011 (5) |
N3 | 0.0234 (6) | 0.0258 (6) | 0.0226 (5) | 0.0125 (5) | −0.0006 (4) | −0.0012 (4) |
C4 | 0.0223 (6) | 0.0251 (6) | 0.0223 (6) | 0.0135 (5) | −0.0002 (5) | −0.0022 (5) |
C5 | 0.0237 (6) | 0.0266 (6) | 0.0237 (6) | 0.0140 (6) | 0.0002 (4) | −0.0005 (5) |
N6 | 0.0231 (6) | 0.0256 (6) | 0.0244 (5) | 0.0136 (5) | −0.0005 (4) | −0.0020 (4) |
N7 | 0.0370 (7) | 0.0425 (8) | 0.0282 (6) | 0.0265 (6) | −0.0027 (5) | −0.0003 (5) |
C8 | 0.0266 (7) | 0.0298 (7) | 0.0239 (6) | 0.0161 (6) | 0.0024 (5) | −0.0005 (5) |
N9 | 0.0310 (7) | 0.0467 (8) | 0.0306 (6) | 0.0216 (6) | −0.0070 (5) | −0.0064 (5) |
C10 | 0.0240 (7) | 0.0324 (7) | 0.0314 (7) | 0.0127 (6) | −0.0020 (5) | 0.0025 (6) |
N11 | 0.0362 (7) | 0.0456 (8) | 0.0451 (8) | 0.0164 (7) | −0.0007 (6) | 0.0179 (6) |
N1—C2 | 1.3327 (18) | C4—C8 | 1.4297 (18) |
N1—C5 | 1.3502 (16) | C5—C10 | 1.4314 (18) |
C2—N3 | 1.3325 (18) | N6—N7 | 1.0946 (15) |
C2—N6 | 1.3936 (15) | C8—N9 | 1.1415 (19) |
N3—C4 | 1.3507 (17) | C10—N11 | 1.144 (2) |
C4—C5 | 1.4094 (18) | ||
C2—N1—C5 | 99.75 (11) | C5—C4—C8 | 128.18 (12) |
N3—C2—N1 | 121.08 (11) | N1—C5—C4 | 109.72 (11) |
N3—C2—N6 | 119.59 (12) | N1—C5—C10 | 122.03 (12) |
N1—C2—N6 | 119.33 (12) | C4—C5—C10 | 128.23 (12) |
C2—N3—C4 | 99.74 (11) | N7—N6—C2 | 178.50 (12) |
N3—C4—C5 | 109.70 (11) | N9—C8—C4 | 178.23 (16) |
N3—C4—C8 | 122.12 (13) | N11—C10—C5 | 178.82 (17) |
C5—N1—C2—N3 | −0.01 (16) | C2—N1—C5—C4 | 0.36 (14) |
C5—N1—C2—N6 | 178.72 (11) | C2—N1—C5—C10 | −178.37 (13) |
N1—C2—N3—C4 | −0.34 (16) | N3—C4—C5—N1 | −0.61 (16) |
N6—C2—N3—C4 | −179.07 (11) | C8—C4—C5—N1 | 179.57 (12) |
C2—N3—C4—C5 | 0.53 (14) | N3—C4—C5—C10 | 178.02 (13) |
C2—N3—C4—C8 | −179.64 (12) | C8—C4—C5—C10 | −1.8 (2) |
Experimental details
Crystal data | |
Chemical formula | C5N6 |
Mr | 144.11 |
Crystal system, space group | Trigonal, P3221 |
Temperature (K) | 150 |
a, c (Å) | 8.0746 (3), 16.7315 (6) |
V (Å3) | 944.73 (8) |
Z | 6 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.37 × 0.30 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.930, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9178, 1289, 1269 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.021, 0.058, 1.09 |
No. of reflections | 1289 |
No. of parameters | 100 |
Δρmax, Δρmin (e Å−3) | 0.14, −0.11 |
Computer programs: APEX2 (Bruker, 2009), APEX2 and SAINT (Bruker, 2009), SAINT (Bruker, 2009) and XPREP (Bruker, 2008), SHELXTL (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008), CHEMDRAW Ultra (Cambridge Soft, 2014).
Acknowledgements
Crystallographic studies were supported in part by the Office of Naval Research (ONR) (Award No. N00014-15-WX-0-0149). The authors would like to thank the Joint Munitions Technology Development Program for funding this work. Los Alamos National Laboratory is operated by Los Alamos National Security (LANS, LLC) under contract No. DE-AC52-06 N A25396 for the US Department of Energy (LA-UR-15-23325).
References
Bruker (2008). SADABS and XPREP. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bugg, C., Lawson, J. & Sass, R. L. (1964). Acta Cryst. 17, 767–768. CSD CrossRef IUCr Journals Google Scholar
Cambridge Soft (2014). CHEMDRAW Ultra. Cambridge Soft Corporation, Cambridge, Massachusetts, USA. Google Scholar
Daidone, G., Maggio, B., Raimondi, M. V., Bombieri, G., Marchini, N. & Artali, R. (2005). Heterocycles, 65, 2753–2761. CrossRef CAS Google Scholar
Dippold, A. A., Klapötke, T. M., Martin, F. A. & Wiedbrauk, S. (2012). Eur. J. Inorg. Chem. pp. 2429–2443. CSD CrossRef Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Lu, Y. & Just, G. (2001). Tetrahedron, 57, 1677–1687. CrossRef CAS Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheppard, W. A. & Webster, O. W. (1973). J. Am. Chem. Soc. 95, 2695–2697. CrossRef CAS Google Scholar
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Diazo moieties are ubiquitious in organic chemistry due to their ability to act as as outstanding leaving groups in substitution reactions. This same reactivity also leads to their instability, and most are prone to decomposition, often violently. For this reason, few diazo-containing molecules have been isolated, and of these, only a small number have been examined by X-ray diffraction [Daidone et al. (2005), Dippold et al. (2012)]. The majority of these compounds are found as diazonium ions, rather than the neutral diazo species [Bugg et al. (1964)]. In contrast, the title compound has a neutral diazo moiety on C2 and is unusual in that it contains only carbon and nitrogen.