research communications
Crystal structures of 4-chloropyridine-2-carbonitrile and 6-chloropyridine-2-carbonitrile exhibit different intermolecular π-stacking, C—H⋯Nnitrile and C—H⋯Npyridine interactions
aDepartment of Chemistry, Vassar College, Poughkeepsie, NY 12604, USA
*Correspondence e-mail: jotanski@vassar.edu
The two title compounds are isomers of C6H3ClN2 containing a pyridine ring, a nitrile group, and a chloro substituent. The molecules of each compound pack together in the solid state with offset face-to-face π-stacking, and intermolecular C—H⋯Nnitrile and C—H⋯Npyridine interactions. 4-Chloropyridine-2-carbonitrile, (I), exhibits pairwise centrosymmetric head-to-head C—H⋯Nnitrile and C—H⋯Npyridine interactions, forming one-dimensional chains, which are π-stacked in an offset face-to-face fashion. The intermolecular packing of the isomeric 6-chloropyridine-2-carbonitrile, (II), which differs only in the position of the chloro substituent on the pyridine ring, exhibits head-to-tail C—H⋯Nnitrile and C—H⋯Npyridine interactions, forming two-dimensional sheets which are π-stacked in an offset face-to-face fashion. In contrast to (I), the offset face-to-face π-stacking in (II) is formed between molecules with alternating orientations of the chloro and nitrile substituents.
Keywords: crystal structure; chlorocyanopyridine; π-stacking; C—H⋯N interactions.
1. Chemical context
Chloropyridinecarbonitriles are members of a class of compounds containing the ubiquitous six-membered nitrogen-containing heterocycle pyridine. The pyridine heterocycle features prominently in many valuable synthetic compounds (Bull et al., 2012). While several of the ten possible isomers of chloropyridinecarbonitrile are commercially available, none of their crystal structures have been reported in the literature, although the structure of 2-chloropyridine-4-carbonitrile has been deposited in the Cambridge Structural Database (Version 5.31, June 2015 with updates; Groom & Allen, 2014) as a private communication (refcode LOBVIJ). The title compounds represent two isomers of chloropyridine-2-carbonitrile, namely 4-chloropyridine-2-carbonitrile, (I), and 6-chloropyridine-2-carbonitrile, (II). In both cases, the intramolecular packing exhibits weak intermolecular C—H⋯N interactions, which are well documented (Desiraju & Steiner, 1999), as well as aromatic π-stacking interactions (Hunter & Saunders, 1990; Lueckheide et al., 2013).
4-Chloropyridine-2-carbonitrile, (I), may be synthesized by the cyanation of 4-chloropyridine N-oxide with trimethylsilanecarbonitrile (TMSCN) (Sakamoto et al., 1985). More recently, it has been shown that (I) can be prepared in a one-step process from 4-nitropyridine N-oxide with ethyl chloroformate and TMSCN (Veerareddy et al., 2011). (I) has found use as a building block for a family of chiral catalysts (Busto et al., 2005).
6-Chloropyridine-2-carbonitrile, (II), may be synthesized by the vapor-phase chlorination of 2-cyanopyridine (Ruetman & Taplin, 1971), or by the cyanation of 2-chloropyridine N-oxide hydrochloride with sodium cyanide (Tsukamoto et al., 2009). This compound has found applications in the preparation of biologically active or pharmaceutical compounds, such as heteroaromatic carboxylic acids (Kiener et al., 1996) and 2-arylamino-substituted pyridinyl (Guo et al., 2013).
2. Structural commentary
4-Chloropyridine-2-carbonitrile, (I) (Fig. 1), and 6-chloropyridine-2-carbonitrile, (II) (Fig. 2), exhibit similar metrical parameters. The nitrile bond length C1—N2 of 1.156 (3) Å in (I) and 1.138 (2) Å in (II) are similar to those seen in the related structure 2-chloropyridine-4-carbonitrile, with the nitrile C≡N distance is 1.141 Å (CSD refcode LOBVIJ). The nitrile bond lengths in 2- and 3-cyanopyridine [1.145 (2) and 1.150 (1) Å, respectively; Kubiak et al., 2002] and 4-cyanopyridine [1.137 (8) Å; Laing et al., 1971] are also similar to those found in the title compounds. The aromatic chlorine bond lengths, viz. C4—Cl and C6—Cl of 1.740 (3) Å in (I) and 1.740 (1) Å in (II), are similar to those seen in the related structures 2-chloropyridine-4-carbonitrile (1.732 Å; CSD refcode LOBVIJ), 2- and 3-chloropyridine hydrochloride (1.710 and 1.727 Å, respectively; Freytag & Jones, 2001), and 4-chloropyridine hydrochloride (1.730 Å; Freytag et al., 1999).
Both (I) and (II) are almost planar, with r.m.s. deviations from the mean planes of all non-H atoms of 0.0077 and 0.0161 Å, respectively. As may be expected, the heterocyclic rings are slightly wedge shaped as the pyridine C—N bond are shorter than the C—C bonds in each aromatic ring. In (I), the ring C2—N1 and C6—N1 bond lengths of 1.361 (3) and 1.350 (3) Å are similar to those found in (II) of 1.349 (1) and 1.322 (1) Å. The average ring C—C bond lengths are 1.403 (2) Å in (I) and 1.391 (5) Å in (II). The lengths are comparable to those found in the parent compound, pyridine, with C—N of 1.34 Å and C—C of 1.38 Å (Mootz & Wussow, 1981), and in the related structure 2-chloropyridine-4-carbonitrile, with C—N bond lengths of 1.328 and 1.340 Å, and an average C—C bond length of 1.377 (7) Å (CSD refcode LOBVIJ).
3. Supramolecular features
The molecules of each of the title compounds pack together in the solid state with π-stacking, and intermolecular C—H⋯Nnitrile and C—H⋯Npyridine interactions, however, the packing motifs are unique, and also different than those found in the related structure 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ). For a discussion of weak C—H⋯X interactions, see Desiraju & Steiner (1999).
The molecules of (I) pack together in the solid state via alternating centrosymmetric head-to-head intermolecular C—H⋯Nnitrile and C—H⋯Npyridine interactions to form a one-dimensional zigzag chain (Fig. 3 and Table 1). The chains further pack together through offset face-to-face π-stacking (Fig. 4). This π-stacking is characterized by a centroid-to-centroid distance of 3.813 (5) Å, a plane-to-centroid distance of 3.454 (4) Å, and a ring offset or ring-slippage distance of 1.615 (3) Å (Hunter & Saunders, 1990; Lueckheide et al., 2013). The π-stacking in (I) is similar to that found in the related unpublished structure 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ).
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In contrast to (I), the molecules of (II) pack together via head-to-tail C—H⋯Nnitrile and C—H⋯Npyridine interactions to form two-dimensional sheets that are parallel to the (001) plane (Fig. 5 and Table 2). As in (I), the parallel planes of the molecules engage in offset face-to-face π-stacking between the two-dimensional sheets, which is characterized by a ring centroid-to-centroid distance of 3.7204 (7) Å, a centroid-to-plane distance of 3.41 (1) Å, and a ring-offset slippage of 1.48 (2) Å (Fig. 6). However, in constrast to (I), the π-stacking in (II) is formed between molecules with alternating orientations of the chloro and nitrile substituents with a plane-to-plane angle of 0.23 (5)°. For a more thorough description of π-stacking, see Hunter & Saunders (1990) and Lueckheide et al. (2013).
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Notably, there are no significant Cl⋯Cl contacts in (I) or (II), in contrast to 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ), which exhibits a Cl⋯Cl contact distance of 3.371 Å that is shorter than the sum of the van der Waals radius of chlorine (3.5 Å; Bondi, 1964). For more information on halide–halide contacts, see Pedireddi et al. (1994) and Jelsch et al. (2015).
4. Synthesis and crystallization
4-Chloropyridine-2-carbonitrile (97%) and 6-chloropyridine-2-carbonitrile (96%) were purchased from Aldrich Chemical Company, USA. 4-Chloropyridine-2-carbonitrile was recrystallized from 95% ethanol.
5. Refinement
Crystal data, data collection and structure . H atoms on C atoms were included in calculated positions and refined using a riding model, with C—H = 0.95 Å and Uiso(H) = 1.2Ueq(C) of the aryl C atoms.
details are summarized in Table 3Supporting information
10.1107/S2056989015011767/rz5161sup1.cif
contains datablocks global, I, II. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015011767/rz5161Isup2.hkl
Structure factors: contains datablock II. DOI: 10.1107/S2056989015011767/rz5161IIsup3.hkl
Supporting information file. DOI: 10.1107/S2056989015011767/rz5161Isup4.cml
Supporting information file. DOI: 10.1107/S2056989015011767/rz5161IIsup5.cml
Chloropyridinecarbonitriles are members of a class of compounds containing the ubiquitous six-membered nitrogen-containing heterocycle pyridine. The pyridine heterocycle features prominently in many valuable synthetic compounds (Bull et al., 2012). While several of the ten possible isomers of chloropyridinecarbonitrile are commercially available, none of their crystal structures have been reported in the literature, although the structure of 2-chloropyridine-4-carbonitrile has been deposited in the Cambridge Structural Database (Version 5.31, June 2015 with updates; Groom & Allen, 2014) as a private communication (refcode LOBVIJ). The title compounds represent two isomers of chloropyridine-2-carbonitrile, namely 4-chloropyridine-2-carbonitrile, (I), and 6-chloropyridine-2-carbonitrile, (II). In both cases, the intramolecular packing exhibits weak intermolecular C—H···N interactions, which are well documented (Desiraju & Steiner, 1999), as well as aromatic π-stacking interactions (Hunter & Saunders, 1990; Lueckheide et al., 2013).
4-Chloropyridine-2-carbonitrile, (I), may be synthesized by the cyanation of 4-chloropyridine N-oxide with trimethylsilanecarbonitrile (TMSCN) (Sakamoto et al., 1985). More recently, it has been shown that (I) can be prepared in a one-step process from 4-nitropyridine N-oxide with ethyl chloroformate and TMSCN (Veerareddy et al., 2011). (I) has found use as a building block for a family of chiral catalysts (Busto et al., 2005) and in the synthesis of 2-arylamino-substituted pyridinyl
(Guo et al., 2013).6-Chloropyridine-2-carbonitrile, (II), may be synthesized by the vapor-phase chlorination of 2-cyanopyridine (Ruetman & Taplin, 1971), or by the cyanation of 2-chloropyridine N-oxide hydrochloride with sodium cyanide (Tsukamoto et al., 2009). This compound has found applications in the preparation of biologically active or pharmaceutical compounds, such as heteroaromatic carboxylic acids (Kiener et al., 1996) and 2-arylamino substituted pyridinyl
(Guo et al., 2013).4-Chloropyridine-2-carbonitrile, (I) (Fig. 1), and 6-chloropyridine-2-carbonitrile, (II) (Fig. 2), exhibit similar metrical parameters. The nitrile bond length C1—N2 of 1.156 (3) Å in (I) and 1.138 (2) Å in (II) are similar to those seen in the related structure 2-chloropyridine-4-carbonitrile, with the nitrile C≡N distance is 1.141 Å (CSD refcode LOBVIJ). The nitrile bond lengths in 2- and 3-cyanopyridine [1.145 (2) and 1.150 (1) Å, respectively; Kubiak et al., 2002] and 4-cyanopyridine [1.137 (8) Å; Laing et al., 1971] are also similar to those found in the title compounds. The aromatic chloride bond lengths, viz. C4—Cl and C6—Cl of 1.740 (3) Å in (I) and 1.740 (1) Å in (II), are similar to those seen in the related structures 2-chloropyridine-4-carbonitrile (1.732 Å; CSD refcode LOBVIJ), 2- and 3-chloropyridine hydrochloride (1.710 and 1.727 Å, respectively; Freytag & Jones, 2001), and 4-chloropyridine hydrochloride (1.730 Å; Freytag et al., 1999).
Both (I) and (II) are planar, with r.m.s. deviations from the mean planes of all non-H atoms of 0.0077 and 0.0161 Å, respectively. As may be expected, the heterocyclic rings are slightly wedge shaped as the pyridine C—N bond are shorter than the C—C bonds in each aromatic ring. In (I), the ring C2—N1 and C6—N1 bond lengths of 1.361 (3) and 1.350 (3) Å are similar to those found in (II) of 1.349 (1) and 1.322 (1) Å. The average ring C—C bond lengths are 1.403 (2) Å in (I) and 1.391 (5) Å in (II). The lengths are comparable to those found in the parent compound, pyridine, with C—N of 1.34 Å and C—C of 1.38 Å (Mootz & Wussow, 1981), and in the related structure 2-chloropyridine-4-carbonitrile, with C—N bond lengths of 1.328 and 1.340 Å, and an average C—C bond length of 1.377 (7) Å (CSD refcode LOBVIJ).
The molecules of each of the title compound pack together in the solid state with π-stacking, and intermolecular C—H···Nnitrile and C—H···Npyridine interactions, however, the packing motifs are unique, and also different than those found in the related structure 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ). For a discussion of weak C—H···X interactions, see Desiraju & Steiner (1999).
The molecules of (I) pack together in the solid state via alternating centrosymmetric head-to-head intermolecular C—H···Nnitrile and C—H···Npyridine interactions to form a one-dimensional zigzag chain (Fig. 3 and Table 1). The chains further pack together through offset face-to-face π-stacking (Fig. 4). This π-stacking is characterized by a centroid-to-centroid distance of 3.813 (5) Å, a plane-to-centroid distance of 3.454 (4) Å, and a ring offset or ring-slippage distance of 1.615 (3) Å (Hunter & Saunders, 1990; Lueckheide et al., 2013). The π-stacking in (I) is similar to that found in the related unpublished structure 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ).
In contrast to (I), the molecules of (II) pack together via head-to-tail C—H···Nnitrile and C—H···Npyridine interactions to form two-dimensional sheets that are parallel to the (001) plane (Fig. 5 and Table 2). As in (I), the parallel planes of the molecules engage in offset face-to-face π-stacking between the two-dimensional sheets, which is characterized by a ring centroid-to-centroid distance of 3.7204 (7) Å, a centroid-to-plane distance of 3.41 (1) Å, and a ring-offset slippage of 1.48 (2) Å (Fig. 6). However, in constrast to (I), the π-stacking in (II) is formed between molecules with alternating orientations of the chloro and nitrile substituents with a plane-to-plane angle of 0.23 (5)°. For a more thorough description of π-stacking, see Hunter & Saunders (1990) and Lueckheide et al. (2013).
Notably, there are no significant Cl···Cl contacts in (I) or (II), in contrast to 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ), which exhibits a Cl···Cl contact distance of 3.371 Å that is shorter than the sum of the van der Waals radius of chlorine (3.5 Å; Bondi, 1964). For more information on halide–halide contacts, see Pedireddi et al. (1994) and Jelsch et al. (2015).
4-Chloropyridine-2-carbonitrile (97%) and 6-chloropyridine-2-carbonitrile (96%) were purchased from Aldrich Chemical Company, USA. 4-Chloropyridine-2-carbonitrile was recrystallized from 95% ethanol.
Chloropyridinecarbonitriles are members of a class of compounds containing the ubiquitous six-membered nitrogen-containing heterocycle pyridine. The pyridine heterocycle features prominently in many valuable synthetic compounds (Bull et al., 2012). While several of the ten possible isomers of chloropyridinecarbonitrile are commercially available, none of their crystal structures have been reported in the literature, although the structure of 2-chloropyridine-4-carbonitrile has been deposited in the Cambridge Structural Database (Version 5.31, June 2015 with updates; Groom & Allen, 2014) as a private communication (refcode LOBVIJ). The title compounds represent two isomers of chloropyridine-2-carbonitrile, namely 4-chloropyridine-2-carbonitrile, (I), and 6-chloropyridine-2-carbonitrile, (II). In both cases, the intramolecular packing exhibits weak intermolecular C—H···N interactions, which are well documented (Desiraju & Steiner, 1999), as well as aromatic π-stacking interactions (Hunter & Saunders, 1990; Lueckheide et al., 2013).
4-Chloropyridine-2-carbonitrile, (I), may be synthesized by the cyanation of 4-chloropyridine N-oxide with trimethylsilanecarbonitrile (TMSCN) (Sakamoto et al., 1985). More recently, it has been shown that (I) can be prepared in a one-step process from 4-nitropyridine N-oxide with ethyl chloroformate and TMSCN (Veerareddy et al., 2011). (I) has found use as a building block for a family of chiral catalysts (Busto et al., 2005) and in the synthesis of 2-arylamino-substituted pyridinyl
(Guo et al., 2013).6-Chloropyridine-2-carbonitrile, (II), may be synthesized by the vapor-phase chlorination of 2-cyanopyridine (Ruetman & Taplin, 1971), or by the cyanation of 2-chloropyridine N-oxide hydrochloride with sodium cyanide (Tsukamoto et al., 2009). This compound has found applications in the preparation of biologically active or pharmaceutical compounds, such as heteroaromatic carboxylic acids (Kiener et al., 1996) and 2-arylamino substituted pyridinyl
(Guo et al., 2013).4-Chloropyridine-2-carbonitrile, (I) (Fig. 1), and 6-chloropyridine-2-carbonitrile, (II) (Fig. 2), exhibit similar metrical parameters. The nitrile bond length C1—N2 of 1.156 (3) Å in (I) and 1.138 (2) Å in (II) are similar to those seen in the related structure 2-chloropyridine-4-carbonitrile, with the nitrile C≡N distance is 1.141 Å (CSD refcode LOBVIJ). The nitrile bond lengths in 2- and 3-cyanopyridine [1.145 (2) and 1.150 (1) Å, respectively; Kubiak et al., 2002] and 4-cyanopyridine [1.137 (8) Å; Laing et al., 1971] are also similar to those found in the title compounds. The aromatic chloride bond lengths, viz. C4—Cl and C6—Cl of 1.740 (3) Å in (I) and 1.740 (1) Å in (II), are similar to those seen in the related structures 2-chloropyridine-4-carbonitrile (1.732 Å; CSD refcode LOBVIJ), 2- and 3-chloropyridine hydrochloride (1.710 and 1.727 Å, respectively; Freytag & Jones, 2001), and 4-chloropyridine hydrochloride (1.730 Å; Freytag et al., 1999).
Both (I) and (II) are planar, with r.m.s. deviations from the mean planes of all non-H atoms of 0.0077 and 0.0161 Å, respectively. As may be expected, the heterocyclic rings are slightly wedge shaped as the pyridine C—N bond are shorter than the C—C bonds in each aromatic ring. In (I), the ring C2—N1 and C6—N1 bond lengths of 1.361 (3) and 1.350 (3) Å are similar to those found in (II) of 1.349 (1) and 1.322 (1) Å. The average ring C—C bond lengths are 1.403 (2) Å in (I) and 1.391 (5) Å in (II). The lengths are comparable to those found in the parent compound, pyridine, with C—N of 1.34 Å and C—C of 1.38 Å (Mootz & Wussow, 1981), and in the related structure 2-chloropyridine-4-carbonitrile, with C—N bond lengths of 1.328 and 1.340 Å, and an average C—C bond length of 1.377 (7) Å (CSD refcode LOBVIJ).
The molecules of each of the title compound pack together in the solid state with π-stacking, and intermolecular C—H···Nnitrile and C—H···Npyridine interactions, however, the packing motifs are unique, and also different than those found in the related structure 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ). For a discussion of weak C—H···X interactions, see Desiraju & Steiner (1999).
The molecules of (I) pack together in the solid state via alternating centrosymmetric head-to-head intermolecular C—H···Nnitrile and C—H···Npyridine interactions to form a one-dimensional zigzag chain (Fig. 3 and Table 1). The chains further pack together through offset face-to-face π-stacking (Fig. 4). This π-stacking is characterized by a centroid-to-centroid distance of 3.813 (5) Å, a plane-to-centroid distance of 3.454 (4) Å, and a ring offset or ring-slippage distance of 1.615 (3) Å (Hunter & Saunders, 1990; Lueckheide et al., 2013). The π-stacking in (I) is similar to that found in the related unpublished structure 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ).
In contrast to (I), the molecules of (II) pack together via head-to-tail C—H···Nnitrile and C—H···Npyridine interactions to form two-dimensional sheets that are parallel to the (001) plane (Fig. 5 and Table 2). As in (I), the parallel planes of the molecules engage in offset face-to-face π-stacking between the two-dimensional sheets, which is characterized by a ring centroid-to-centroid distance of 3.7204 (7) Å, a centroid-to-plane distance of 3.41 (1) Å, and a ring-offset slippage of 1.48 (2) Å (Fig. 6). However, in constrast to (I), the π-stacking in (II) is formed between molecules with alternating orientations of the chloro and nitrile substituents with a plane-to-plane angle of 0.23 (5)°. For a more thorough description of π-stacking, see Hunter & Saunders (1990) and Lueckheide et al. (2013).
Notably, there are no significant Cl···Cl contacts in (I) or (II), in contrast to 2-chloropyridine-4-carbonitrile (CSD refcode LOBVIJ), which exhibits a Cl···Cl contact distance of 3.371 Å that is shorter than the sum of the van der Waals radius of chlorine (3.5 Å; Bondi, 1964). For more information on halide–halide contacts, see Pedireddi et al. (1994) and Jelsch et al. (2015).
4-Chloropyridine-2-carbonitrile (97%) and 6-chloropyridine-2-carbonitrile (96%) were purchased from Aldrich Chemical Company, USA. 4-Chloropyridine-2-carbonitrile was recrystallized from 95% ethanol.
detailsCrystal data, data collection and structure
details are summarized in Table 3. H atoms on C atoms were included in calculated positions and refined using a riding model, with C—H = 0.95 Å and Uiso(H) = 1.2Ueq(C) of the aryl C matoms.For both compounds, data collection: APEX2 (Bruker, 2013); cell
APEX2 (Bruker, 2013); data reduction: SAINT (Bruker, 2013); program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: SHELXTL2014 (Sheldrick, 2008); software used to prepare material for publication: SHELXTL2014 (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009) and Mercury (Macrae et al., 2008).Fig. 1. A view of 4-chloropyridine-2-carbonitrile, (I), with the atom-numbering scheme. Displacement ellipsoids are shown at the 50% probability level. | |
Fig. 2. A view of 6-chloropyridine-2-carbonitrile, (II), with the atom-numbering scheme. Displacement ellipsoids are shown at the 50% probability level. | |
Fig. 3. A view of the intermolecular C—H···Nnitrile and C—H···Npyridine contacts (dashed lines) in 4-chloropyridine-2-carbonitrile, (I), that form a one-dimensional chain. [Symmetry codes: (i) -x-1, -y+1, -z; (ii) -x, -y+1, -z+1.] | |
Fig. 4. A view of the offset face-to-face π-stacking in 4-chloropyridine-2-carbonitrile, (I), with the thick dashed line indicating a centroid-to-centroid interaction. [Symmetry code: (i) x+1, y, z.] | |
Fig. 5. A view of the intermolecular C—H···Nnitrile and C—H···Npyridine contacts (dashed lines) in 6-chloropyridine-2-carbonitrile, (I), that form a two-dimensional sheet. [Symmetry codes: (i) x-1, y, z; (ii) -x+3/2, y-1/2, -z+3/2.] | |
Fig. 6. A view of the alternating offset face-to-face π-stacking in 6-chloropyridine-2-carbonitrile, (II), with the thick dashed line indicating a centroid-to-centroid interaction. [Symmetry code: (i) x+1/2, -y+1/2, z+1/2.] |
C6H3ClN2 | F(000) = 280 |
Mr = 138.55 | Dx = 1.524 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 3.813 (5) Å | Cell parameters from 3637 reflections |
b = 14.047 (19) Å | θ = 2.9–30.3° |
c = 11.356 (15) Å | µ = 0.52 mm−1 |
β = 96.806 (19)° | T = 125 K |
V = 604.0 (14) Å3 | Plate, colourless |
Z = 4 | 0.25 × 0.10 × 0.04 mm |
Bruker APEXII CCD diffractometer | 1852 independent reflections |
Radiation source: fine-focus sealed tube | 1498 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.063 |
Detector resolution: 8.3333 pixels mm-1 | θmax = 30.6°, θmin = 2.3° |
φ and ω scans | h = −5→5 |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −20→19 |
Tmin = 0.67, Tmax = 0.98 | l = −16→16 |
12191 measured reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
wR(F2) = 0.135 | w = 1/[σ2(Fo2) + (0.0646P)2 + 0.4268P] where P = (Fo2 + 2Fc2)/3 |
S = 1.12 | (Δ/σ)max < 0.001 |
1852 reflections | Δρmax = 0.53 e Å−3 |
82 parameters | Δρmin = −0.37 e Å−3 |
C6H3ClN2 | V = 604.0 (14) Å3 |
Mr = 138.55 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 3.813 (5) Å | µ = 0.52 mm−1 |
b = 14.047 (19) Å | T = 125 K |
c = 11.356 (15) Å | 0.25 × 0.10 × 0.04 mm |
β = 96.806 (19)° |
Bruker APEXII CCD diffractometer | 1852 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | 1498 reflections with I > 2σ(I) |
Tmin = 0.67, Tmax = 0.98 | Rint = 0.063 |
12191 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.53 e Å−3 |
1852 reflections | Δρmin = −0.37 e Å−3 |
82 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl | 0.27576 (14) | 0.79489 (4) | 0.15624 (5) | 0.02207 (17) | |
N1 | 0.0055 (5) | 0.52050 (12) | 0.33977 (16) | 0.0197 (4) | |
N2 | −0.4067 (5) | 0.39592 (13) | 0.09730 (18) | 0.0253 (4) | |
C1 | −0.2642 (5) | 0.45592 (15) | 0.15388 (19) | 0.0204 (4) | |
C2 | −0.0811 (5) | 0.53460 (14) | 0.22134 (18) | 0.0173 (4) | |
C3 | −0.0084 (5) | 0.61731 (14) | 0.15971 (18) | 0.0177 (4) | |
H3A | −0.0758 | 0.6235 | 0.0768 | 0.021* | |
C4 | 0.1688 (5) | 0.69050 (13) | 0.22646 (18) | 0.0163 (4) | |
C5 | 0.2634 (5) | 0.67930 (15) | 0.34888 (18) | 0.0192 (4) | |
H5A | 0.383 | 0.7283 | 0.3953 | 0.023* | |
C6 | 0.1748 (6) | 0.59298 (15) | 0.40037 (19) | 0.0207 (4) | |
H6A | 0.2382 | 0.5851 | 0.4832 | 0.025* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl | 0.0217 (3) | 0.0212 (3) | 0.0227 (3) | −0.00411 (18) | 0.00040 (18) | 0.00357 (18) |
N1 | 0.0200 (8) | 0.0197 (8) | 0.0191 (9) | 0.0004 (6) | 0.0016 (7) | 0.0014 (7) |
N2 | 0.0261 (9) | 0.0245 (9) | 0.0247 (10) | −0.0046 (7) | 0.0003 (8) | −0.0011 (7) |
C1 | 0.0176 (9) | 0.0218 (9) | 0.0216 (10) | 0.0002 (7) | 0.0019 (8) | 0.0027 (8) |
C2 | 0.0141 (8) | 0.0180 (9) | 0.0199 (10) | 0.0012 (7) | 0.0021 (7) | −0.0016 (7) |
C3 | 0.0161 (9) | 0.0217 (9) | 0.0153 (9) | −0.0004 (7) | 0.0020 (7) | −0.0001 (7) |
C4 | 0.0144 (8) | 0.0169 (8) | 0.0180 (9) | 0.0012 (7) | 0.0032 (7) | 0.0018 (7) |
C5 | 0.0185 (9) | 0.0201 (9) | 0.0185 (10) | 0.0003 (7) | 0.0002 (8) | −0.0024 (7) |
C6 | 0.0236 (10) | 0.0230 (10) | 0.0152 (9) | 0.0012 (8) | 0.0020 (8) | −0.0004 (7) |
Cl—C4 | 1.740 (3) | C3—C4 | 1.402 (3) |
N1—C6 | 1.350 (3) | C3—H3A | 0.95 |
N1—C2 | 1.361 (3) | C4—C5 | 1.403 (3) |
N2—C1 | 1.156 (3) | C5—C6 | 1.405 (3) |
C1—C2 | 1.473 (3) | C5—H5A | 0.95 |
C2—C3 | 1.401 (3) | C6—H6A | 0.95 |
C6—N1—C2 | 116.07 (19) | C3—C4—Cl | 119.61 (18) |
N2—C1—C2 | 177.6 (2) | C5—C4—Cl | 120.11 (16) |
N1—C2—C3 | 125.12 (19) | C4—C5—C6 | 117.58 (19) |
N1—C2—C1 | 116.70 (19) | C4—C5—H5A | 121.2 |
C3—C2—C1 | 118.2 (2) | C6—C5—H5A | 121.2 |
C2—C3—C4 | 116.7 (2) | N1—C6—C5 | 124.3 (2) |
C2—C3—H3A | 121.7 | N1—C6—H6A | 117.9 |
C4—C3—H3A | 121.7 | C5—C6—H6A | 117.9 |
C3—C4—C5 | 120.27 (19) | ||
C6—N1—C2—C3 | −0.1 (3) | C2—C3—C4—Cl | 178.93 (15) |
C6—N1—C2—C1 | 179.66 (19) | C3—C4—C5—C6 | 0.1 (3) |
N1—C2—C3—C4 | 0.3 (3) | Cl—C4—C5—C6 | −179.07 (16) |
C1—C2—C3—C4 | −179.48 (18) | C2—N1—C6—C5 | −0.1 (3) |
C2—C3—C4—C5 | −0.3 (3) | C4—C5—C6—N1 | 0.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···N2i | 0.95 | 2.64 | 3.462 (5) | 146 |
C6—H6A···N1ii | 0.95 | 2.75 | 3.493 (5) | 136 |
Symmetry codes: (i) −x−1, −y+1, −z; (ii) −x, −y+1, −z+1. |
C6H3ClN2 | F(000) = 280 |
Mr = 138.55 | Dx = 1.510 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 6.1739 (15) Å | Cell parameters from 9960 reflections |
b = 15.238 (4) Å | θ = 2.7–30.5° |
c = 7.0123 (18) Å | µ = 0.52 mm−1 |
β = 112.492 (4)° | T = 125 K |
V = 609.5 (3) Å3 | Plate, colourless |
Z = 4 | 0.20 × 0.15 × 0.03 mm |
Bruker APEXII CCD diffractometer | 1868 independent reflections |
Radiation source: fine-focus sealed tube | 1657 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
Detector resolution: 8.3333 pixels mm-1 | θmax = 30.6°, θmin = 2.7° |
φ and ω scans | h = −8→8 |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −21→21 |
Tmin = 0.82, Tmax = 0.98 | l = −10→9 |
15460 measured reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.028 | H-atom parameters constrained |
wR(F2) = 0.082 | w = 1/[σ2(Fo2) + (0.0424P)2 + 0.1697P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
1868 reflections | Δρmax = 0.48 e Å−3 |
82 parameters | Δρmin = −0.19 e Å−3 |
C6H3ClN2 | V = 609.5 (3) Å3 |
Mr = 138.55 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 6.1739 (15) Å | µ = 0.52 mm−1 |
b = 15.238 (4) Å | T = 125 K |
c = 7.0123 (18) Å | 0.20 × 0.15 × 0.03 mm |
β = 112.492 (4)° |
Bruker APEXII CCD diffractometer | 1868 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | 1657 reflections with I > 2σ(I) |
Tmin = 0.82, Tmax = 0.98 | Rint = 0.031 |
15460 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 0 restraints |
wR(F2) = 0.082 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.48 e Å−3 |
1868 reflections | Δρmin = −0.19 e Å−3 |
82 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl | 1.01050 (5) | 0.09596 (2) | 0.82065 (4) | 0.02803 (10) | |
N1 | 0.98012 (14) | 0.26545 (6) | 0.82258 (13) | 0.01720 (17) | |
N2 | 1.10287 (19) | 0.47889 (7) | 0.79286 (18) | 0.0351 (2) | |
C1 | 1.00059 (18) | 0.41966 (8) | 0.81170 (17) | 0.0232 (2) | |
C2 | 0.87412 (16) | 0.34169 (7) | 0.83298 (15) | 0.01728 (19) | |
C3 | 0.66223 (17) | 0.34787 (7) | 0.85770 (15) | 0.0198 (2) | |
H3A | 0.5958 | 0.4032 | 0.8664 | 0.024* | |
C4 | 0.55044 (17) | 0.26976 (8) | 0.86928 (16) | 0.0210 (2) | |
H4A | 0.4041 | 0.271 | 0.8846 | 0.025* | |
C5 | 0.65405 (17) | 0.19009 (7) | 0.85828 (15) | 0.0205 (2) | |
H5A | 0.5818 | 0.1359 | 0.8659 | 0.025* | |
C6 | 0.86897 (17) | 0.19295 (7) | 0.83550 (15) | 0.01759 (19) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl | 0.03124 (16) | 0.02096 (15) | 0.03084 (16) | 0.00422 (9) | 0.01070 (11) | −0.00400 (9) |
N1 | 0.0135 (3) | 0.0212 (4) | 0.0168 (4) | −0.0004 (3) | 0.0058 (3) | −0.0014 (3) |
N2 | 0.0343 (5) | 0.0294 (5) | 0.0430 (6) | −0.0068 (4) | 0.0164 (5) | 0.0013 (4) |
C1 | 0.0207 (5) | 0.0237 (5) | 0.0250 (5) | 0.0006 (4) | 0.0085 (4) | −0.0006 (4) |
C2 | 0.0148 (4) | 0.0199 (4) | 0.0167 (4) | −0.0007 (3) | 0.0055 (3) | −0.0001 (3) |
C3 | 0.0154 (4) | 0.0238 (5) | 0.0204 (4) | 0.0035 (3) | 0.0071 (3) | 0.0010 (4) |
C4 | 0.0135 (4) | 0.0317 (5) | 0.0187 (4) | −0.0012 (4) | 0.0072 (3) | 0.0010 (4) |
C5 | 0.0182 (4) | 0.0246 (5) | 0.0186 (4) | −0.0051 (3) | 0.0068 (3) | 0.0004 (4) |
C6 | 0.0175 (4) | 0.0193 (4) | 0.0151 (4) | 0.0004 (3) | 0.0052 (3) | −0.0012 (3) |
Cl—C6 | 1.7402 (11) | C3—C4 | 1.3938 (15) |
N1—C6 | 1.3218 (13) | C3—H3A | 0.95 |
N1—C2 | 1.3490 (13) | C4—C5 | 1.3881 (16) |
N2—C1 | 1.1378 (16) | C4—H4A | 0.95 |
C1—C2 | 1.4604 (15) | C5—C6 | 1.3965 (14) |
C2—C3 | 1.3870 (14) | C5—H5A | 0.95 |
C6—N1—C2 | 116.15 (9) | C5—C4—H4A | 120.2 |
N2—C1—C2 | 177.99 (12) | C3—C4—H4A | 120.2 |
N1—C2—C3 | 124.44 (9) | C4—C5—C6 | 117.21 (9) |
N1—C2—C1 | 113.94 (9) | C4—C5—H5A | 121.4 |
C3—C2—C1 | 121.62 (9) | C6—C5—H5A | 121.4 |
C2—C3—C4 | 117.46 (9) | N1—C6—C5 | 125.09 (9) |
C2—C3—H3A | 121.3 | N1—C6—Cl | 114.83 (8) |
C4—C3—H3A | 121.3 | C5—C6—Cl | 120.07 (8) |
C5—C4—C3 | 119.65 (9) | ||
C6—N1—C2—C3 | 0.62 (14) | C3—C4—C5—C6 | −0.07 (15) |
C6—N1—C2—C1 | −178.24 (8) | C2—N1—C6—C5 | 0.12 (15) |
N1—C2—C3—C4 | −1.03 (15) | C2—N1—C6—Cl | 179.80 (7) |
C1—C2—C3—C4 | 177.74 (9) | C4—C5—C6—N1 | −0.38 (15) |
C2—C3—C4—C5 | 0.71 (15) | C4—C5—C6—Cl | 179.96 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4A···N1i | 0.95 | 2.49 | 3.4099 (15) | 164 |
C5—H5A···N2ii | 0.95 | 2.70 | 3.5651 (17) | 152 |
Symmetry codes: (i) x−1, y, z; (ii) −x+3/2, y−1/2, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···N2i | 0.95 | 2.64 | 3.462 (5) | 145.5 |
C6—H6A···N1ii | 0.95 | 2.75 | 3.493 (5) | 136.0 |
Symmetry codes: (i) −x−1, −y+1, −z; (ii) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4A···N1i | 0.95 | 2.49 | 3.4099 (15) | 164.4 |
C5—H5A···N2ii | 0.95 | 2.70 | 3.5651 (17) | 151.7 |
Symmetry codes: (i) x−1, y, z; (ii) −x+3/2, y−1/2, −z+3/2. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C6H3ClN2 | C6H3ClN2 |
Mr | 138.55 | 138.55 |
Crystal system, space group | Monoclinic, P21/n | Monoclinic, P21/n |
Temperature (K) | 125 | 125 |
a, b, c (Å) | 3.813 (5), 14.047 (19), 11.356 (15) | 6.1739 (15), 15.238 (4), 7.0123 (18) |
β (°) | 96.806 (19) | 112.492 (4) |
V (Å3) | 604.0 (14) | 609.5 (3) |
Z | 4 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.52 | 0.52 |
Crystal size (mm) | 0.25 × 0.10 × 0.04 | 0.20 × 0.15 × 0.03 |
Data collection | ||
Diffractometer | Bruker APEXII CCD | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2013) | Multi-scan (SADABS; Bruker, 2013) |
Tmin, Tmax | 0.67, 0.98 | 0.82, 0.98 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12191, 1852, 1498 | 15460, 1868, 1657 |
Rint | 0.063 | 0.031 |
(sin θ/λ)max (Å−1) | 0.715 | 0.717 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.135, 1.12 | 0.028, 0.082, 1.09 |
No. of reflections | 1852 | 1868 |
No. of parameters | 82 | 82 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.53, −0.37 | 0.48, −0.19 |
Computer programs: APEX2 (Bruker, 2013), SAINT (Bruker, 2013), SHELXS2014 (Sheldrick, 2008), SHELXL2014 (Sheldrick, 2015), SHELXTL2014 (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009) and Mercury (Macrae et al., 2008).
Acknowledgements
This work was supported by Vassar College. X-ray facilities were provided by the US National Science Foundation (grant No. 0521237 to JMT).
References
Bondi, A. (1964). J. Phys. Chem. 68, 441–451 . CrossRef CAS Web of Science Google Scholar
Bruker (2013). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bull, J. A., Mousseau, J. J., Pelletier, G. & Charette, A. B. (2012). Chem. Rev. 112, 2642–2713. CrossRef CAS PubMed Google Scholar
Busto, E., Gotor-Fernandez, V. & Gotor, V. (2005). Tetrahedron Asymmetry, 16, 3427–3425. CrossRef CAS Google Scholar
Desiraju, G. R. & Steiner, T. (1999). In The Weak Hydrogen Bond in Structural Chemistry and Biology. Oxford University Press. Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
Freytag, M. & Jones, P. G. (2001). Z. Naturforsch. Teil B, 56, 889–896. CAS Google Scholar
Freytag, M., Jones, P. G., Aherns, B. & Fischer, A. K. (1999). New J. Chem. 23, 1137–1139. CSD CrossRef CAS Google Scholar
Groom, C. R. & Allen, F. H. (2014). Angew. Chem. Int. Ed. 53, 662–671. Web of Science CSD CrossRef CAS Google Scholar
Guo, S., Wang, Y., Sun, C., Li, J., Zou, D., Wu, Y. & Wu, Y. (2013). Tetrahedron Lett. 54, 3233–3237. CrossRef CAS Google Scholar
Hunter, C. A. & Saunders, J. K. M. (1990). J. Am. Chem. Soc. 112, 5525–5534. CrossRef CAS Web of Science Google Scholar
Jelsch, C., Soudani, S. & Ben Nasr, C. (2015). IUCrJ, 2, 327–340. Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
Kiener, A., Roduit, J.-P. & Glockler, R. (1996). Eur. Patent Appl. EP747486A119961211. Google Scholar
Kubiak, R., Janczak, J. & Śledź, M. (2002). J. Mol. Struct. 610, 59–64. CSD CrossRef CAS Google Scholar
Laing, M., Sparrow, N. & Sommerville, P. (1971). Acta Cryst. B27, 1986–1990. CSD CrossRef IUCr Journals Google Scholar
Lueckheide, M., Rothman, N., Ko, B. & Tanski, J. M. (2013). Polyhedron, 58, 79–84. Web of Science CSD CrossRef CAS Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Mootz, D. & Wussow, H. G. (1981). J. Chem. Phys. 75, 1517–1522. CSD CrossRef CAS Web of Science Google Scholar
Pedireddi, V. R., Reddy, D. S., Goud, B. S., Craig, D. C., Rae, A. D. & Desiraju, G. R. (1994). J. Chem. Soc. Perkin Trans. 2, pp. 2353–2360. CSD CrossRef Web of Science Google Scholar
Ruetman, S. H. & Taplin, W. H. (1971). US Patent 3591597 A. Google Scholar
Sakamoto, T., Kaneda, S.-I., Nishimura, S. & Yamanaka, H. (1985). Chem. Pharm. Bull. 2, 565–571. CrossRef Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Tsukamoto, I., Koshio, H., Kuramochi, T., Saitoh, C., Yanai-Inamura, H., Kitada-Nozawa, C., Yamamoto, E., Yatsu, T., Shimada, Y., Sakamoto, S. & Tsukamoto, S.-I. (2009). Bioorg. Med. Chem. 17, 3130–3141. CrossRef PubMed CAS Google Scholar
Veerareddy, A., Surendrareddy, G. & Dubey, P. K. (2011). J. Heterocycl. Chem. 48, 961–964. CrossRef CAS Google Scholar
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