organic compounds
of oxadiargyl
aDepartment of Chemistry and Research Institute of Natural Sciences, Gyeongsang, National University, Jinju 660-701, Republic of Korea
*Correspondence e-mail: thkim@gnu.ac.kr, jekim@gnu.ac.kr
In the title compound {systematic name: 5-tert-butyl-3-[2,4-dichloro-5-(prop-2-ynyloxy)phenyl]-1,3,4-oxadiazol-2(3H)-one}, C15H14Cl2N2O3, which is an oxadiazolone herbicide, the dihedral angle between the planes of the oxadiazolone and benzene rings is 65.84 (6)°. In the crystal, weak intermolecular Cl⋯Cl [3.3600 (7) Å] short contacts link adjacent molecules, forming chains along the b-axis direction. These chains are linked by C—H⋯O, C—H⋯N and C—H⋯Cl hydrogen bonds, generating a three-dimensional network. Weak C—H⋯π interactions are also present.
Keywords: crystal structure; oxadiargyl; 1,3,4-oxadiazolone; herbicide; hydrogen bonding; Cl⋯Cl short contacts.
CCDC reference: 1406766
1. Related literature
For information on the herbicidal properties of the title compound, see: Saber-Tehrani et al. (2012). For a related see: Zhang (2006).
2. Experimental
2.1. Crystal data
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2.3. Refinement
|
Data collection: APEX2 (Bruker 2009); cell SAINT (Bruker 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: DIAMOND (Brandenburg, 2010); software used to prepare material for publication: SHELXTL (Sheldrick 2008).
Supporting information
CCDC reference: 1406766
10.1107/S2056989015011524/sj5464sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015011524/sj5464Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989015011524/sj5464Isup3.cml
The title compound was purchased from the Dr. Ehrenstorfer GmbH Company. Slow evaporation of a solution in CH3CN gave single crystals suitable for X-ray analysis.
All H-atoms were positioned geometrically and refined using a riding model with d(C—H) = 0.98 Å, Uiso = 1.2Ueq(C) for the methyl groups, d(C—H) = 0.99 Å, Uiso = 1.2Ueq(C) for the methylene C—H and d(C—H) = 0.95 Å, Uiso = 1.2Ueq(C) for aromatic and alkyne C—H.
Data collection: APEX2 (Bruker 2009); cell
SAINT (Bruker 2009); data reduction: SAINT (Bruker 2009); program(s) used to solve structure: SHELXS97 (Sheldrick 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: DIAMOND (Brandenburg, 2010); software used to prepare material for publication: SHELXTL (Sheldrick 2008).Fig. 1. The asymmetric unit of the title compound with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. | |
Fig. 2. Crystal packing viewed along the b axis. The C—H···O and C—H···N, C—H···Cl hydrogen bonds and short Cl···Cl contacts are shown as dashed lines. |
C15H14Cl2N2O3 | F(000) = 704 |
Mr = 341.18 | Dx = 1.411 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 12.9132 (6) Å | Cell parameters from 5206 reflections |
b = 15.3893 (7) Å | θ = 2.7–27.4° |
c = 8.4792 (4) Å | µ = 0.42 mm−1 |
β = 107.559 (1)° | T = 173 K |
V = 1606.52 (13) Å3 | Block, colourless |
Z = 4 | 0.32 × 0.14 × 0.04 mm |
Bruker APEXII CCD diffractometer | 3126 reflections with I > 2σ(I) |
ϕ and ω scans | Rint = 0.030 |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | θmax = 27.5°, θmin = 2.1° |
Tmin = 0.878, Tmax = 0.984 | h = −16→15 |
14639 measured reflections | k = −20→19 |
3673 independent reflections | l = −8→11 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.036 | H-atom parameters constrained |
wR(F2) = 0.091 | w = 1/[σ2(Fo2) + (0.0373P)2 + 0.7866P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
3673 reflections | Δρmax = 0.37 e Å−3 |
202 parameters | Δρmin = −0.50 e Å−3 |
C15H14Cl2N2O3 | V = 1606.52 (13) Å3 |
Mr = 341.18 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.9132 (6) Å | µ = 0.42 mm−1 |
b = 15.3893 (7) Å | T = 173 K |
c = 8.4792 (4) Å | 0.32 × 0.14 × 0.04 mm |
β = 107.559 (1)° |
Bruker APEXII CCD diffractometer | 3673 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3126 reflections with I > 2σ(I) |
Tmin = 0.878, Tmax = 0.984 | Rint = 0.030 |
14639 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.091 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.37 e Å−3 |
3673 reflections | Δρmin = −0.50 e Å−3 |
202 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.51241 (4) | 0.84758 (3) | 0.07299 (7) | 0.04172 (14) | |
Cl2 | 0.42630 (4) | 1.13566 (3) | 0.36463 (6) | 0.03708 (13) | |
O1 | 0.34909 (9) | 0.76748 (7) | 0.18615 (15) | 0.0285 (3) | |
O2 | 0.15195 (11) | 1.12537 (8) | 0.23434 (14) | 0.0353 (3) | |
O3 | 0.13661 (9) | 1.11525 (7) | 0.49542 (13) | 0.0263 (3) | |
N1 | 0.24959 (11) | 1.02745 (8) | 0.43361 (16) | 0.0234 (3) | |
N2 | 0.25036 (11) | 1.00602 (8) | 0.59469 (15) | 0.0231 (3) | |
C1 | 0.07451 (17) | 0.77324 (15) | 0.0073 (3) | 0.0496 (5) | |
H1 | 0.0087 | 0.7937 | −0.0683 | 0.060* | |
C2 | 0.15618 (15) | 0.74788 (11) | 0.1011 (2) | 0.0357 (4) | |
C3 | 0.26062 (15) | 0.71962 (10) | 0.2137 (2) | 0.0317 (4) | |
H3A | 0.2606 | 0.7281 | 0.3295 | 0.038* | |
H3B | 0.2707 | 0.6569 | 0.1971 | 0.038* | |
C4 | 0.35972 (12) | 0.85268 (9) | 0.23138 (19) | 0.0215 (3) | |
C5 | 0.44020 (13) | 0.89889 (10) | 0.1882 (2) | 0.0249 (3) | |
C6 | 0.46160 (13) | 0.98461 (10) | 0.2306 (2) | 0.0264 (3) | |
H6 | 0.5184 | 1.0142 | 0.2031 | 0.032* | |
C7 | 0.39940 (13) | 1.02756 (10) | 0.3143 (2) | 0.0249 (3) | |
C8 | 0.31715 (12) | 0.98351 (10) | 0.35432 (18) | 0.0218 (3) | |
C9 | 0.29737 (12) | 0.89626 (10) | 0.31370 (18) | 0.0217 (3) | |
H9 | 0.2411 | 0.8665 | 0.3423 | 0.026* | |
C10 | 0.17873 (14) | 1.09254 (10) | 0.3692 (2) | 0.0259 (3) | |
C11 | 0.18252 (13) | 1.05977 (10) | 0.62444 (19) | 0.0226 (3) | |
C12 | 0.14869 (13) | 1.06873 (10) | 0.7774 (2) | 0.0262 (3) | |
C13 | 0.18132 (16) | 1.15945 (12) | 0.8505 (2) | 0.0381 (4) | |
H13A | 0.2602 | 1.1664 | 0.8776 | 0.057* | |
H13B | 0.1597 | 1.1663 | 0.9511 | 0.057* | |
H13C | 0.1449 | 1.2036 | 0.7695 | 0.057* | |
C14 | 0.2053 (2) | 0.99878 (14) | 0.8999 (2) | 0.0506 (6) | |
H14A | 0.1804 | 0.9414 | 0.8539 | 0.076* | |
H14B | 0.1880 | 1.0067 | 1.0039 | 0.076* | |
H14C | 0.2840 | 1.0032 | 0.9209 | 0.076* | |
C15 | 0.02549 (16) | 1.05801 (14) | 0.7315 (3) | 0.0433 (5) | |
H15A | −0.0100 | 1.1030 | 0.6516 | 0.065* | |
H15B | 0.0025 | 1.0636 | 0.8311 | 0.065* | |
H15C | 0.0049 | 1.0005 | 0.6822 | 0.065* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0476 (3) | 0.0308 (2) | 0.0615 (3) | 0.00758 (19) | 0.0387 (2) | 0.0042 (2) |
Cl2 | 0.0460 (3) | 0.0210 (2) | 0.0434 (3) | −0.00999 (18) | 0.0122 (2) | −0.00547 (17) |
O1 | 0.0335 (6) | 0.0178 (5) | 0.0382 (7) | 0.0008 (5) | 0.0168 (5) | −0.0026 (5) |
O2 | 0.0489 (8) | 0.0344 (7) | 0.0234 (6) | 0.0135 (6) | 0.0120 (5) | 0.0092 (5) |
O3 | 0.0342 (6) | 0.0235 (6) | 0.0217 (6) | 0.0083 (5) | 0.0090 (5) | 0.0022 (4) |
N1 | 0.0316 (7) | 0.0208 (6) | 0.0188 (6) | 0.0047 (5) | 0.0090 (5) | 0.0025 (5) |
N2 | 0.0299 (7) | 0.0211 (6) | 0.0181 (6) | 0.0018 (5) | 0.0071 (5) | 0.0007 (5) |
C1 | 0.0382 (11) | 0.0554 (13) | 0.0528 (13) | −0.0060 (10) | 0.0100 (10) | −0.0193 (11) |
C2 | 0.0393 (10) | 0.0300 (9) | 0.0424 (11) | −0.0101 (8) | 0.0195 (9) | −0.0130 (8) |
C3 | 0.0430 (10) | 0.0182 (7) | 0.0392 (10) | −0.0064 (7) | 0.0206 (8) | −0.0025 (7) |
C4 | 0.0243 (8) | 0.0176 (7) | 0.0218 (8) | 0.0016 (6) | 0.0057 (6) | 0.0016 (6) |
C5 | 0.0241 (8) | 0.0255 (8) | 0.0268 (8) | 0.0058 (6) | 0.0102 (6) | 0.0044 (6) |
C6 | 0.0235 (8) | 0.0258 (8) | 0.0307 (9) | −0.0018 (6) | 0.0093 (6) | 0.0050 (7) |
C7 | 0.0284 (8) | 0.0184 (7) | 0.0253 (8) | −0.0036 (6) | 0.0042 (6) | −0.0004 (6) |
C8 | 0.0249 (8) | 0.0216 (7) | 0.0185 (7) | 0.0024 (6) | 0.0059 (6) | 0.0001 (6) |
C9 | 0.0227 (7) | 0.0204 (7) | 0.0226 (8) | −0.0010 (6) | 0.0079 (6) | 0.0018 (6) |
C10 | 0.0327 (9) | 0.0220 (7) | 0.0232 (8) | 0.0018 (7) | 0.0088 (7) | −0.0007 (6) |
C11 | 0.0277 (8) | 0.0193 (7) | 0.0189 (7) | 0.0008 (6) | 0.0043 (6) | 0.0008 (6) |
C12 | 0.0313 (8) | 0.0263 (8) | 0.0228 (8) | 0.0048 (7) | 0.0106 (7) | 0.0001 (6) |
C13 | 0.0452 (11) | 0.0388 (10) | 0.0341 (10) | −0.0050 (8) | 0.0178 (8) | −0.0130 (8) |
C14 | 0.0790 (16) | 0.0499 (12) | 0.0287 (10) | 0.0289 (11) | 0.0250 (10) | 0.0130 (9) |
C15 | 0.0384 (10) | 0.0552 (12) | 0.0413 (11) | −0.0089 (9) | 0.0196 (9) | −0.0069 (9) |
Cl1—C5 | 1.7310 (16) | C6—C7 | 1.389 (2) |
Cl2—C7 | 1.7266 (16) | C6—H6 | 0.9500 |
O1—C4 | 1.3613 (18) | C7—C8 | 1.386 (2) |
O1—C3 | 1.4365 (19) | C8—C9 | 1.391 (2) |
O2—C10 | 1.2017 (19) | C9—H9 | 0.9500 |
O3—C11 | 1.3733 (18) | C11—C12 | 1.495 (2) |
O3—C10 | 1.3836 (19) | C12—C14 | 1.521 (2) |
N1—C10 | 1.355 (2) | C12—C15 | 1.528 (2) |
N1—N2 | 1.4022 (17) | C12—C13 | 1.534 (2) |
N1—C8 | 1.4228 (19) | C13—H13A | 0.9800 |
N2—C11 | 1.284 (2) | C13—H13B | 0.9800 |
C1—C2 | 1.179 (3) | C13—H13C | 0.9800 |
C1—H1 | 0.9500 | C14—H14A | 0.9800 |
C2—C3 | 1.464 (3) | C14—H14B | 0.9800 |
C3—H3A | 0.9900 | C14—H14C | 0.9800 |
C3—H3B | 0.9900 | C15—H15A | 0.9800 |
C4—C9 | 1.387 (2) | C15—H15B | 0.9800 |
C4—C5 | 1.396 (2) | C15—H15C | 0.9800 |
C5—C6 | 1.373 (2) | ||
C4—O1—C3 | 117.74 (12) | C8—C9—H9 | 120.0 |
C11—O3—C10 | 106.45 (12) | O2—C10—N1 | 131.27 (15) |
C10—N1—N2 | 111.83 (12) | O2—C10—O3 | 124.23 (15) |
C10—N1—C8 | 126.62 (13) | N1—C10—O3 | 104.49 (13) |
N2—N1—C8 | 121.56 (12) | N2—C11—O3 | 113.59 (13) |
C11—N2—N1 | 103.60 (12) | N2—C11—C12 | 128.70 (14) |
C2—C1—H1 | 180.0 | O3—C11—C12 | 117.71 (13) |
C1—C2—C3 | 177.0 (2) | C11—C12—C14 | 108.73 (13) |
O1—C3—C2 | 111.27 (14) | C11—C12—C15 | 108.86 (14) |
O1—C3—H3A | 109.4 | C14—C12—C15 | 110.28 (16) |
C2—C3—H3A | 109.4 | C11—C12—C13 | 108.54 (14) |
O1—C3—H3B | 109.4 | C14—C12—C13 | 110.56 (16) |
C2—C3—H3B | 109.4 | C15—C12—C13 | 109.82 (15) |
H3A—C3—H3B | 108.0 | C12—C13—H13A | 109.5 |
O1—C4—C9 | 125.65 (14) | C12—C13—H13B | 109.5 |
O1—C4—C5 | 115.88 (14) | H13A—C13—H13B | 109.5 |
C9—C4—C5 | 118.47 (14) | C12—C13—H13C | 109.5 |
C6—C5—C4 | 121.82 (15) | H13A—C13—H13C | 109.5 |
C6—C5—Cl1 | 119.08 (12) | H13B—C13—H13C | 109.5 |
C4—C5—Cl1 | 119.08 (12) | C12—C14—H14A | 109.5 |
C5—C6—C7 | 119.30 (15) | C12—C14—H14B | 109.5 |
C5—C6—H6 | 120.4 | H14A—C14—H14B | 109.5 |
C7—C6—H6 | 120.4 | C12—C14—H14C | 109.5 |
C8—C7—C6 | 119.77 (14) | H14A—C14—H14C | 109.5 |
C8—C7—Cl2 | 121.50 (12) | H14B—C14—H14C | 109.5 |
C6—C7—Cl2 | 118.73 (12) | C12—C15—H15A | 109.5 |
C7—C8—C9 | 120.57 (14) | C12—C15—H15B | 109.5 |
C7—C8—N1 | 120.52 (14) | H15A—C15—H15B | 109.5 |
C9—C8—N1 | 118.89 (14) | C12—C15—H15C | 109.5 |
C4—C9—C8 | 120.03 (14) | H15A—C15—H15C | 109.5 |
C4—C9—H9 | 120.0 | H15B—C15—H15C | 109.5 |
C10—N1—N2—C11 | −1.55 (17) | O1—C4—C9—C8 | 179.41 (15) |
C8—N1—N2—C11 | 178.49 (14) | C5—C4—C9—C8 | −1.3 (2) |
C4—O1—C3—C2 | 70.42 (18) | C7—C8—C9—C4 | −0.4 (2) |
C3—O1—C4—C9 | 5.2 (2) | N1—C8—C9—C4 | 177.85 (14) |
C3—O1—C4—C5 | −174.11 (14) | N2—N1—C10—O2 | −176.02 (18) |
O1—C4—C5—C6 | −178.05 (14) | C8—N1—C10—O2 | 3.9 (3) |
C9—C4—C5—C6 | 2.6 (2) | N2—N1—C10—O3 | 2.34 (17) |
O1—C4—C5—Cl1 | 3.8 (2) | C8—N1—C10—O3 | −177.70 (14) |
C9—C4—C5—Cl1 | −175.58 (12) | C11—O3—C10—O2 | 176.34 (16) |
C4—C5—C6—C7 | −2.1 (2) | C11—O3—C10—N1 | −2.17 (16) |
Cl1—C5—C6—C7 | 176.10 (12) | N1—N2—C11—O3 | 0.07 (17) |
C5—C6—C7—C8 | 0.3 (2) | N1—N2—C11—C12 | 179.98 (15) |
C5—C6—C7—Cl2 | −179.26 (12) | C10—O3—C11—N2 | 1.36 (18) |
C6—C7—C8—C9 | 1.0 (2) | C10—O3—C11—C12 | −178.56 (14) |
Cl2—C7—C8—C9 | −179.51 (12) | N2—C11—C12—C14 | −2.4 (2) |
C6—C7—C8—N1 | −177.28 (14) | O3—C11—C12—C14 | 177.51 (15) |
Cl2—C7—C8—N1 | 2.2 (2) | N2—C11—C12—C15 | −122.58 (19) |
C10—N1—C8—C7 | 65.3 (2) | O3—C11—C12—C15 | 57.33 (19) |
N2—N1—C8—C7 | −114.74 (16) | N2—C11—C12—C13 | 117.92 (18) |
C10—N1—C8—C9 | −112.99 (18) | O3—C11—C12—C13 | −62.17 (19) |
N2—N1—C8—C9 | 66.97 (19) |
Cg1 and Cg2 are the centroids of the O3/C10/N1/N2/C11 and C4–C9 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O2i | 0.95 | 2.47 | 3.401 (3) | 168 |
C13—H13B···O2ii | 0.98 | 2.51 | 3.429 (2) | 155 |
C3—H3B···N2iii | 0.99 | 2.64 | 3.607 (2) | 166 |
C13—H13A···Cl1iv | 0.98 | 2.85 | 3.811 (2) | 168 |
C14—H14b···Cg2ii | 0.98 | 2.99 | 3.396 (2) | 106 |
C15—H15c···Cg1v | 0.98 | 2.80 | 3.497 (2) | 129 |
Symmetry codes: (i) −x, −y+2, −z; (ii) x, y, z+1; (iii) x, −y+3/2, z−1/2; (iv) −x+1, −y+2, −z+1; (v) −x, −y+2, −z+2. |
Cg1 and Cg2 are the centroids of the O3/C10/N1/N2/C11 and C4–C9 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O2i | 0.95 | 2.47 | 3.401 (3) | 168 |
C13—H13B···O2ii | 0.98 | 2.51 | 3.429 (2) | 155 |
C3—H3B···N2iii | 0.99 | 2.64 | 3.607 (2) | 166 |
C13—H13A···Cl1iv | 0.98 | 2.85 | 3.811 (2) | 168 |
C14—H14b···Cg2ii | 0.98 | 2.99 | 3.396 (2) | 106 |
C15—H15c···Cg1v | 0.98 | 2.80 | 3.497 (2) | 129 |
Symmetry codes: (i) −x, −y+2, −z; (ii) x, y, z+1; (iii) x, −y+3/2, z−1/2; (iv) −x+1, −y+2, −z+1; (v) −x, −y+2, −z+2. |
Acknowledgements
This research was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (No. 2014R1A1A4A01009105).
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Oxadiargyl [systematic name: 5-tert-butyl-3-[2,4-dichloro-5-(prop-2- ynyloxy)phenyl]-1,3,4-oxadiazol-2(3H)-one] is an oxadiazolone herbicide that has been developed for the control of annual grasses, sedges and broad-leaf weeds in rice fields (Saber-Tehrani et al., 2012). However, until now its crystal structure has not been reported. In the title compound (Fig. 1), the dihedral angle between the planes of the oxadiazolone and benzene rings is 65.84 (6)°. All bond lengths and bond angles are normal and comparable to those observed in the crystal structure of a similar compound (Zhang 2006).
In the crystal structure (Fig. 2), weak intermolecular Cl1···Cl2v [3.3600 (7) Å] short contacts link adjacent molecules, forming one-dimensional chains along the b-axis. The chains are linked by C—H···O, C—H···N, and C—H···Cl hydrogen bonds (Table 1), resulting in a three-dimensional architecture. In addition, weak C—H···π interactions involving the C14 and C15 methyl groups and the oxadiazolone and benzene rings are also found, Table 1.