organic compounds
of pencycuron
aDepartment of Chemistry and Research Institute of Natural Sciences, Gyeongsang, National University, Jinju 660-701, Republic of Korea
*Correspondence e-mail: thkim@gnu.ac.kr, jekim@gnu.ac.kr
In the title compound [systematic name: 1-(4-chlorobenzyl)-1-cyclopentyl-3-phenylurea], C19H21ClN2O, which is a urea fungicide, the cyclopentyl ring adopts an with one of the methylene C atoms adjacent to the C atom bonding to the N atom as the flap. The dihedral angles between the mean planes of the central cyclopentyl ring (all atoms) and the chlorobenzyl and phenyl rings are 77.96 (6) and 57.77 (7)°, respectively. In the crystal, N—H⋯O hydrogen bonds link adjacent molecules, forming C(4) chains propagating along the b-axis direction. The chains are linked by weak π–π interactions between the chlorobenzene rings [centroid–centroid separation = 3.9942 (9) Å], resulting in two-dimensional networks extending parellel to the (110) plane.
Keywords: crystal structure; pencycuron; urea; fungicide; hydrogen bonding; π–π interactions.
CCDC reference: 1409194
1. Related literature
For information on the fungicidal properties of the title compound, see: Pal et al. (2005). For a related see: Bjerglund et al. (2012).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: DIAMOND (Brandenburg, 2010); software used to prepare material for publication: SHELXTL (Sheldrick 2008).
Supporting information
CCDC reference: 1409194
https://doi.org/10.1107/S2056989015012414/hb7456sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989015012414/hb7456Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989015012414/hb7456Isup3.cml
The title compound was purchased from the Dr Ehrenstorfer GmbH Company. Slow evaporation of a solution in CH2Cl2 gave colourless needles.
The N-bound H atom was located in a difference Fourier map and freely refined (N—H = 0.828 (19) Å). The C-bound H atoms were positioned geometrically and refined using a riding model with d(C—H) = 1.00 Å, Uiso = 1.2Ueq(C) for Csp3—H, d(C—H) = 0.99 Å, Uiso = 1.2Ueq(C) for CH2 groups, d(C—H) = 0.95 Å, Uiso = 1.2Ueq(C) for aromatic C—H.
Pencycuron, [systematic name: 1-(4-chlorobenzyl)-1-cyclopentyl-3-phenylurea], is a urea fungicide and it has been used for the control of diseases in various crops, including rice (Pal et al., 2005). However, until now its
has not been reported. In the title compound (Fig. 1), the dihedral angles between the mean planes of the central cyclopentyl ring [r.m.s. deviation = 0.1693] and the chlorobenzyl and phenyl rings are 77.96 (6) and 57.778 (7)°, respectively. All bond lengths and bond angles are normal and comparable to those observed in the of a similar compound (Bjerglund et al., 2012).In the crystal (Fig. 2), N—H···O hydrogen bonds link adjacent molecules, forming a one-dimensional chains along the b axis direction (Table. 1). The chains are linked by weak π–π interactions [Cg1···Cg1ii, 3.9942 (9) Å], resulting in a two-dimensional networks parellel to the (110) plane (Cg1 is the centroid of the C1–C6 ring)[for symmetry codes: (ii), -x, -y, -z].
For information on the fungicidal properties of the title compound, see: Pal et al. (2005). For a related
see: Bjerglund et al. (2012).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: DIAMOND (Brandenburg, 2010); software used to prepare material for publication: SHELXTL (Sheldrick 2008).C19H21ClN2O | Dx = 1.270 Mg m−3 |
Mr = 328.83 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 6227 reflections |
a = 12.1585 (5) Å | θ = 2.5–27.3° |
b = 8.6721 (4) Å | µ = 0.23 mm−1 |
c = 32.6152 (12) Å | T = 173 K |
V = 3438.9 (2) Å3 | Needle, colourless |
Z = 8 | 0.50 × 0.11 × 0.09 mm |
F(000) = 1392 |
Bruker APEX-II CCD diffractometer | 2698 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.039 |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | θmax = 26.0°, θmin = 2.1° |
Tmin = 0.894, Tmax = 0.980 | h = −14→14 |
27037 measured reflections | k = −6→10 |
3374 independent reflections | l = −40→40 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.095 | w = 1/[σ2(Fo2) + (0.0384P)2 + 1.2518P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
3374 reflections | Δρmax = 0.17 e Å−3 |
212 parameters | Δρmin = −0.24 e Å−3 |
C19H21ClN2O | V = 3438.9 (2) Å3 |
Mr = 328.83 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 12.1585 (5) Å | µ = 0.23 mm−1 |
b = 8.6721 (4) Å | T = 173 K |
c = 32.6152 (12) Å | 0.50 × 0.11 × 0.09 mm |
Bruker APEX-II CCD diffractometer | 3374 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2698 reflections with I > 2σ(I) |
Tmin = 0.894, Tmax = 0.980 | Rint = 0.039 |
27037 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.095 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.17 e Å−3 |
3374 reflections | Δρmin = −0.24 e Å−3 |
212 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.23590 (4) | −0.16966 (8) | −0.05434 (2) | 0.06131 (19) | |
O1 | 0.15878 (8) | −0.14846 (11) | 0.15909 (3) | 0.0287 (2) | |
N1 | 0.08966 (10) | 0.07872 (15) | 0.13656 (4) | 0.0278 (3) | |
N2 | 0.23017 (10) | 0.07453 (16) | 0.18515 (4) | 0.0288 (3) | |
H2N | 0.2489 (14) | 0.162 (2) | 0.1777 (5) | 0.039 (5)* | |
C1 | 0.17668 (14) | −0.1232 (2) | −0.00710 (5) | 0.0384 (4) | |
C2 | 0.22919 (13) | −0.0213 (2) | 0.01841 (5) | 0.0397 (4) | |
H2 | 0.2975 | 0.0233 | 0.0106 | 0.048* | |
C3 | 0.18127 (12) | 0.0160 (2) | 0.05576 (5) | 0.0355 (4) | |
H3 | 0.2173 | 0.0863 | 0.0736 | 0.043* | |
C4 | 0.08150 (12) | −0.04807 (17) | 0.06739 (4) | 0.0277 (3) | |
C5 | 0.03091 (13) | −0.15110 (19) | 0.04097 (5) | 0.0327 (4) | |
H5 | −0.0373 | −0.1962 | 0.0486 | 0.039* | |
C6 | 0.07769 (14) | −0.1895 (2) | 0.00376 (5) | 0.0390 (4) | |
H6 | 0.0423 | −0.2604 | −0.0141 | 0.047* | |
C7 | 0.02356 (12) | −0.00774 (19) | 0.10708 (4) | 0.0298 (3) | |
H7A | −0.0428 | 0.0535 | 0.1005 | 0.036* | |
H7B | −0.0012 | −0.1045 | 0.1203 | 0.036* | |
C8 | 0.06470 (12) | 0.24352 (18) | 0.14250 (5) | 0.0315 (4) | |
H8 | 0.1190 | 0.2854 | 0.1627 | 0.038* | |
C9 | 0.07296 (15) | 0.3403 (2) | 0.10377 (5) | 0.0436 (4) | |
H9A | 0.0381 | 0.2873 | 0.0802 | 0.052* | |
H9B | 0.1506 | 0.3629 | 0.0969 | 0.052* | |
C10 | 0.01105 (17) | 0.4869 (2) | 0.11481 (6) | 0.0532 (5) | |
H10A | −0.0149 | 0.5406 | 0.0898 | 0.064* | |
H10B | 0.0584 | 0.5579 | 0.1307 | 0.064* | |
C11 | −0.08580 (17) | 0.4315 (2) | 0.14061 (7) | 0.0565 (5) | |
H11A | −0.1520 | 0.4182 | 0.1233 | 0.068* | |
H11B | −0.1027 | 0.5070 | 0.1625 | 0.068* | |
C12 | −0.05145 (14) | 0.2774 (2) | 0.15928 (6) | 0.0421 (4) | |
H12A | −0.1033 | 0.1949 | 0.1511 | 0.050* | |
H12B | −0.0502 | 0.2841 | 0.1896 | 0.050* | |
C13 | 0.15966 (11) | −0.00577 (17) | 0.16037 (4) | 0.0249 (3) | |
C14 | 0.29239 (11) | 0.00718 (17) | 0.21711 (4) | 0.0255 (3) | |
C15 | 0.39770 (12) | 0.06323 (18) | 0.22439 (5) | 0.0300 (3) | |
H15 | 0.4283 | 0.1387 | 0.2066 | 0.036* | |
C16 | 0.45819 (13) | 0.0096 (2) | 0.25737 (5) | 0.0357 (4) | |
H16 | 0.5295 | 0.0500 | 0.2625 | 0.043* | |
C17 | 0.41528 (14) | −0.1025 (2) | 0.28280 (5) | 0.0381 (4) | |
H17 | 0.4569 | −0.1396 | 0.3054 | 0.046* | |
C18 | 0.31135 (14) | −0.16039 (19) | 0.27514 (5) | 0.0354 (4) | |
H18 | 0.2822 | −0.2390 | 0.2923 | 0.043* | |
C19 | 0.24920 (12) | −0.10478 (18) | 0.24270 (4) | 0.0293 (3) | |
H19 | 0.1772 | −0.1434 | 0.2381 | 0.035* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0543 (3) | 0.0950 (5) | 0.0346 (2) | 0.0261 (3) | 0.0028 (2) | −0.0022 (3) |
O1 | 0.0304 (5) | 0.0214 (5) | 0.0343 (6) | −0.0008 (5) | −0.0029 (4) | −0.0001 (5) |
N1 | 0.0293 (6) | 0.0238 (7) | 0.0303 (6) | 0.0018 (6) | −0.0084 (5) | −0.0012 (6) |
N2 | 0.0295 (7) | 0.0207 (6) | 0.0361 (7) | −0.0033 (6) | −0.0097 (5) | 0.0054 (6) |
C1 | 0.0388 (9) | 0.0465 (10) | 0.0298 (8) | 0.0157 (8) | −0.0022 (7) | 0.0049 (8) |
C2 | 0.0300 (8) | 0.0476 (11) | 0.0414 (9) | 0.0029 (8) | 0.0011 (7) | 0.0082 (9) |
C3 | 0.0303 (8) | 0.0365 (9) | 0.0396 (9) | −0.0018 (7) | −0.0046 (7) | −0.0005 (8) |
C4 | 0.0274 (7) | 0.0269 (8) | 0.0290 (7) | 0.0030 (7) | −0.0073 (6) | 0.0041 (7) |
C5 | 0.0300 (8) | 0.0331 (9) | 0.0350 (8) | −0.0003 (7) | −0.0070 (6) | 0.0014 (7) |
C6 | 0.0408 (9) | 0.0412 (10) | 0.0352 (8) | 0.0044 (8) | −0.0113 (7) | −0.0056 (8) |
C7 | 0.0254 (7) | 0.0316 (9) | 0.0324 (8) | −0.0024 (7) | −0.0056 (6) | −0.0017 (7) |
C8 | 0.0354 (8) | 0.0245 (8) | 0.0345 (8) | 0.0026 (7) | −0.0091 (7) | 0.0022 (7) |
C9 | 0.0495 (10) | 0.0358 (10) | 0.0454 (10) | 0.0022 (8) | −0.0033 (8) | 0.0120 (9) |
C10 | 0.0705 (13) | 0.0338 (10) | 0.0552 (11) | 0.0087 (10) | −0.0153 (10) | 0.0118 (9) |
C11 | 0.0532 (11) | 0.0433 (12) | 0.0730 (14) | 0.0190 (10) | −0.0099 (10) | 0.0020 (11) |
C12 | 0.0459 (10) | 0.0343 (9) | 0.0459 (10) | 0.0084 (8) | 0.0025 (8) | −0.0006 (8) |
C13 | 0.0231 (7) | 0.0246 (8) | 0.0269 (7) | −0.0011 (6) | 0.0017 (6) | 0.0016 (7) |
C14 | 0.0265 (7) | 0.0211 (7) | 0.0290 (7) | 0.0047 (6) | −0.0049 (6) | −0.0033 (6) |
C15 | 0.0278 (8) | 0.0253 (8) | 0.0369 (8) | 0.0015 (6) | −0.0026 (6) | −0.0027 (7) |
C16 | 0.0271 (7) | 0.0346 (9) | 0.0454 (9) | 0.0065 (7) | −0.0104 (7) | −0.0104 (8) |
C17 | 0.0430 (9) | 0.0375 (10) | 0.0339 (8) | 0.0145 (8) | −0.0141 (7) | −0.0038 (8) |
C18 | 0.0440 (9) | 0.0297 (9) | 0.0326 (8) | 0.0073 (8) | −0.0023 (7) | 0.0018 (7) |
C19 | 0.0286 (7) | 0.0249 (8) | 0.0342 (8) | 0.0023 (7) | −0.0038 (6) | −0.0013 (7) |
Cl1—C1 | 1.7478 (17) | C8—H8 | 1.0000 |
O1—C13 | 1.2382 (17) | C9—C10 | 1.521 (3) |
N1—C13 | 1.3654 (18) | C9—H9A | 0.9900 |
N1—C7 | 1.4604 (18) | C9—H9B | 0.9900 |
N1—C8 | 1.474 (2) | C10—C11 | 1.525 (3) |
N2—C13 | 1.3686 (19) | C10—H10A | 0.9900 |
N2—C14 | 1.4141 (18) | C10—H10B | 0.9900 |
N2—H2N | 0.828 (19) | C11—C12 | 1.527 (3) |
C1—C2 | 1.371 (2) | C11—H11A | 0.9900 |
C1—C6 | 1.380 (2) | C11—H11B | 0.9900 |
C2—C3 | 1.389 (2) | C12—H12A | 0.9900 |
C2—H2 | 0.9500 | C12—H12B | 0.9900 |
C3—C4 | 1.387 (2) | C14—C19 | 1.384 (2) |
C3—H3 | 0.9500 | C14—C15 | 1.390 (2) |
C4—C5 | 1.385 (2) | C15—C16 | 1.384 (2) |
C4—C7 | 1.515 (2) | C15—H15 | 0.9500 |
C5—C6 | 1.381 (2) | C16—C17 | 1.380 (2) |
C5—H5 | 0.9500 | C16—H16 | 0.9500 |
C6—H6 | 0.9500 | C17—C18 | 1.382 (2) |
C7—H7A | 0.9900 | C17—H17 | 0.9500 |
C7—H7B | 0.9900 | C18—C19 | 1.387 (2) |
C8—C9 | 1.520 (2) | C18—H18 | 0.9500 |
C8—C12 | 1.543 (2) | C19—H19 | 0.9500 |
C13—N1—C7 | 116.23 (12) | H9A—C9—H9B | 109.0 |
C13—N1—C8 | 125.02 (12) | C9—C10—C11 | 104.42 (15) |
C7—N1—C8 | 118.11 (12) | C9—C10—H10A | 110.9 |
C13—N2—C14 | 124.07 (13) | C11—C10—H10A | 110.9 |
C13—N2—H2N | 117.8 (12) | C9—C10—H10B | 110.9 |
C14—N2—H2N | 116.5 (12) | C11—C10—H10B | 110.9 |
C2—C1—C6 | 121.24 (15) | H10A—C10—H10B | 108.9 |
C2—C1—Cl1 | 119.44 (13) | C10—C11—C12 | 106.55 (15) |
C6—C1—Cl1 | 119.32 (14) | C10—C11—H11A | 110.4 |
C1—C2—C3 | 119.13 (15) | C12—C11—H11A | 110.4 |
C1—C2—H2 | 120.4 | C10—C11—H11B | 110.4 |
C3—C2—H2 | 120.4 | C12—C11—H11B | 110.4 |
C4—C3—C2 | 120.91 (15) | H11A—C11—H11B | 108.6 |
C4—C3—H3 | 119.5 | C11—C12—C8 | 105.99 (14) |
C2—C3—H3 | 119.5 | C11—C12—H12A | 110.5 |
C5—C4—C3 | 118.45 (14) | C8—C12—H12A | 110.5 |
C5—C4—C7 | 118.30 (13) | C11—C12—H12B | 110.5 |
C3—C4—C7 | 123.23 (14) | C8—C12—H12B | 110.5 |
C6—C5—C4 | 121.28 (15) | H12A—C12—H12B | 108.7 |
C6—C5—H5 | 119.4 | O1—C13—N1 | 120.78 (13) |
C4—C5—H5 | 119.4 | O1—C13—N2 | 122.27 (13) |
C1—C6—C5 | 118.98 (16) | N1—C13—N2 | 116.96 (13) |
C1—C6—H6 | 120.5 | C19—C14—C15 | 119.46 (13) |
C5—C6—H6 | 120.5 | C19—C14—N2 | 122.10 (13) |
N1—C7—C4 | 115.17 (12) | C15—C14—N2 | 118.31 (14) |
N1—C7—H7A | 108.5 | C16—C15—C14 | 120.32 (15) |
C4—C7—H7A | 108.5 | C16—C15—H15 | 119.8 |
N1—C7—H7B | 108.5 | C14—C15—H15 | 119.8 |
C4—C7—H7B | 108.5 | C17—C16—C15 | 120.21 (15) |
H7A—C7—H7B | 107.5 | C17—C16—H16 | 119.9 |
N1—C8—C9 | 114.36 (13) | C15—C16—H16 | 119.9 |
N1—C8—C12 | 114.81 (13) | C16—C17—C18 | 119.51 (15) |
C9—C8—C12 | 104.49 (13) | C16—C17—H17 | 120.2 |
N1—C8—H8 | 107.6 | C18—C17—H17 | 120.2 |
C9—C8—H8 | 107.6 | C17—C18—C19 | 120.64 (16) |
C12—C8—H8 | 107.6 | C17—C18—H18 | 119.7 |
C8—C9—C10 | 103.43 (14) | C19—C18—H18 | 119.7 |
C8—C9—H9A | 111.1 | C14—C19—C18 | 119.83 (14) |
C10—C9—H9A | 111.1 | C14—C19—H19 | 120.1 |
C8—C9—H9B | 111.1 | C18—C19—H19 | 120.1 |
C10—C9—H9B | 111.1 | ||
C6—C1—C2—C3 | −0.2 (3) | C9—C10—C11—C12 | 24.7 (2) |
Cl1—C1—C2—C3 | 179.54 (13) | C10—C11—C12—C8 | −1.9 (2) |
C1—C2—C3—C4 | −0.2 (3) | N1—C8—C12—C11 | −147.64 (15) |
C2—C3—C4—C5 | 0.4 (2) | C9—C8—C12—C11 | −21.56 (18) |
C2—C3—C4—C7 | −177.90 (15) | C7—N1—C13—O1 | −6.1 (2) |
C3—C4—C5—C6 | −0.3 (2) | C8—N1—C13—O1 | 164.53 (14) |
C7—C4—C5—C6 | 178.12 (14) | C7—N1—C13—N2 | 173.51 (12) |
C2—C1—C6—C5 | 0.4 (3) | C8—N1—C13—N2 | −15.8 (2) |
Cl1—C1—C6—C5 | −179.41 (12) | C14—N2—C13—O1 | −13.1 (2) |
C4—C5—C6—C1 | −0.1 (2) | C14—N2—C13—N1 | 167.32 (13) |
C13—N1—C7—C4 | −81.80 (16) | C13—N2—C14—C19 | −40.2 (2) |
C8—N1—C7—C4 | 106.87 (15) | C13—N2—C14—C15 | 144.02 (15) |
C5—C4—C7—N1 | 169.45 (13) | C19—C14—C15—C16 | −1.1 (2) |
C3—C4—C7—N1 | −12.2 (2) | N2—C14—C15—C16 | 174.79 (14) |
C13—N1—C8—C9 | 131.17 (15) | C14—C15—C16—C17 | 1.4 (2) |
C7—N1—C8—C9 | −58.34 (18) | C15—C16—C17—C18 | −0.2 (2) |
C13—N1—C8—C12 | −108.04 (16) | C16—C17—C18—C19 | −1.3 (2) |
C7—N1—C8—C12 | 62.45 (18) | C15—C14—C19—C18 | −0.3 (2) |
N1—C8—C9—C10 | 163.14 (14) | N2—C14—C19—C18 | −176.06 (14) |
C12—C8—C9—C10 | 36.79 (18) | C17—C18—C19—C14 | 1.5 (2) |
C8—C9—C10—C11 | −38.08 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1i | 0.828 (19) | 2.081 (19) | 2.8838 (17) | 163.1 (17) |
Symmetry code: (i) −x+1/2, y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1i | 0.828 (19) | 2.081 (19) | 2.8838 (17) | 163.1 (17) |
Symmetry code: (i) −x+1/2, y+1/2, z. |
Acknowledgements
This research was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (No. 2015R1D1A4A01020317).
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Pencycuron, [systematic name: 1-(4-chlorobenzyl)-1-cyclopentyl-3-phenylurea], is a urea fungicide and it has been used for the control of diseases in various crops, including rice (Pal et al., 2005). However, until now its crystal structure has not been reported. In the title compound (Fig. 1), the dihedral angles between the mean planes of the central cyclopentyl ring [r.m.s. deviation = 0.1693] and the chlorobenzyl and phenyl rings are 77.96 (6) and 57.778 (7)°, respectively. All bond lengths and bond angles are normal and comparable to those observed in the crystal structure of a similar compound (Bjerglund et al., 2012).
In the crystal (Fig. 2), N—H···O hydrogen bonds link adjacent molecules, forming a one-dimensional chains along the b axis direction (Table. 1). The chains are linked by weak π–π interactions [Cg1···Cg1ii, 3.9942 (9) Å], resulting in a two-dimensional networks parellel to the (110) plane (Cg1 is the centroid of the C1–C6 ring)[for symmetry codes: (ii), -x, -y, -z].