research communications
Crystal structures of 4-phenylpiperazin-1-ium 6-chloro-5-ethyl-2,4-dioxopyrimidin-1-ide and 4-phenylpiperazin-1-ium 6-chloro-5-isopropyl-2,4-dioxopyrimidin-1-ide
aDepartment of Chemistry, College of Sciences, King Saud University, Riyadh 11451, Saudi Arabia, bDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia, and cDepartment of Physical and Analytical Chemistry, Faculty of Chemistry, Oviedo University-CINN, Oviedo 33006, Spain
*Correspondence e-mail: elemam5@hotmail.com, sgg@uniovi.es
The title molecular salts, C10H15N2+·C6H6ClN2O2−, (I), and C10H15N2+·C7H8ClN2O2−, (II), consist of 4-phenylpiperazin-1-ium cations with a 6-chloro-5-ethyl-2,4-dioxopyrimidin-1-ide anion in (I) and a 6-chloro-5-isopropyl-2,4-dioxopyrimidin-1-ide anion in (II). Salt (I) crystallizes with two independent cations and anions in the In the crystal structures of both salts, the ions are linked via N—H⋯O and N—H⋯N hydrogen bonds, forming sheets which are parallel to (100) in (I) and to (001) in (II). In (I), the sheets are linked via C—H⋯Cl hydrogen bonds, forming a three-dimensional framework.
1. Chemical context
2,4-Dioxopyrimidine derivatives (uracils) and their related analogues are known for their diverse chemotherapeutic activities including anticancer activity (Ghoshal & Jacob, 1997; Spáčilová et al., 2007; Blokhina et al., 1972), anti-HIV activity (Tanaka et al., 1995; El-Emam et al., 2004) and antibacterial activity (Al-Turkistani et al., 2011). In addition, the piperazine nucleus constitutes the core pharmacophore of several biologically active compounds which display antiviral (Romero et al., 1994, 1996), anticancer (Fytas et al., 2015; Kamal et al., 2015; Arnatt et al., 2014), antitubercular and antibacterial (Nagesh et al., 2014; Peng et al., 2015; Kapić et al., 2011; Wang et al., 2014) and central nervous system activities (Bender et al., 2014; Bali et al., 2010).
As a result of the relative acidity of 2,4-dioxopyrimidines (Kurinovich & Lee, 2002; Jang et al., 2001; Nguyen et al., 1998), the title piperazinium salts were isolated as minor byproducts during the reaction of 1-phenylpiperazine with 5-alkyl-6-chlorouracils (Al-Turkistani et al., 2011). In a continuation of our interest in the structures of piperazinium salts (Al-Omary et al., 2014), we report herein on the isolation and crystal structures of these two new piperazinium salts, (I) and (II).
2. Structural commentary
The molecular structures of the title salts (I) and (II) are illustrated in Figs. 1 and 2, respectively. Compound (I) crystallizes with two independent 4-phenylpiperazin-1-ium cations (A and B) and two independent 6-chloro-5-ethyl-2, 4-dioxopyrimidin-1-ide anions (C and D) in the In both compounds, the piperazine rings adopt a distorted chair conformation with a positively charged protonated N atom. In compound (I), the mean plane of the piperazine ring makes a dihedral angle of 34.8 (2)° with the attached phenyl ring in cation A, and 39.7 (2)° in cation B. The equivalent dihedral angle is 39.61 (9)° in the cation of compound (II). In the uracil anions, the pyrimidine rings are almost planar with r.m.s. deviations of 0.008 Å in both anions (C and D) of compound (I), and 0.024 Å in compound (II).
3. Supramolecular features
In the crystal of (I), two tetranuclear units are formed, involving cation A and anion C, and cation B and anion D, via N—H⋯O and C—H⋯O hydrogen bonds. These units are linked via N—H⋯N hydrogen bonds, forming separate A/B and C/D sheets parallel to the bc plane (Table 1 and Fig. 3). The sheets are linked via C—H⋯Cl hydrogen bonds, forming a three-dimensional framework (Fig. 3 and Table 1).
In the crystal of (II), the cation and anion are linked by N—H⋯O and C—H⋯O hydrogen bonds, forming chains extending along the b-axis direction. The chains are linked via N—H⋯N hydrogen bonds, forming sheets lying parallel to the ac plane (Table 2 and Fig. 4).
4. Database survey
A search of the Cambridge Structural Database (Version 5.36, last update November 2014; Groom & Allen, 2014) for the anion 6-chloro-5-ethyl-2,4-dioxopyrimidin-1-ide, present in compound (I), gave no hits, while for the anion 6-chloro-5-isopropyl-2,4-dioxopyrimidin-1-ide, present in compound (II), one hit was obtained, with the cation 4-(2-methoxyphenyl)piperazin-1-ium (Al-Omary et al., 2014).
5. Synthesis and crystallization
Compound (I): A mixture of 6-chloro-5-ethyluracil (349 mg, 2.0 mmol), 1-phenylpiperazine (325 mg, 2.0 mmol) and anhydrous potassium carbonate (276 mg, 2.0 mmol), in ethanol (8 ml), was heated under reflux for 6 h. On cooling, the precipitate, thus formed was separated by filtration to yield 306 mg (51%) of 5-ethyl-6-(4-phenyl-1-piperazinyl)uracil. The filtrate was concentrated by vacuum distillation to 5 ml and allowed to stand at room temperature overnight to yield compound (I) as colourless crystals (m.p.: 459–461 K). 1H NMR (DMSO-d6, 500.13 MHz): δ 0.93 (t, 3H, CH3, J = 7.0 Hz), 2.35 (q, 2H, CH2), 3.25 (s, 4H, piperazine-H), 3.45 (s, 4H, piperazine-H), 6.83–6.95 (m, 3H, Ar—H), 7.21 (d, 2H, Ar—H, J = 6.6 Hz), 8.15–8.17 (m, 2H, NH2), 10.83 (s, 1H, NH). 13C NMR (DMSO-d6, 125.76 MHz): δ 13.80 (CH3), 19.55 (CH2), 44.18, 47.86 (piperazine-C), 116.32, 119.62, 128.44, 150.70 (Ar—C), 108.88, 153.90, 155.94, 164.80 (pyrimidine-C),
Compound (II): 6-Chloro-5-isopropyluracil (377 mg, 2.0 mmol), 1-phenylpiperazine (325 mg, 2.0 mmol) and anhydrous potassium carbonate (276 mg, 2.0 mmol), in ethanol (8 ml), was heated under reflux for 6 h. On cooling, the precipitate thus formed was separated by filtration to yield 566 mg (90%) of 5-isopropyl-6-(4-phenyl-1-piperazinyl)uracil. The filtrate was concentrated by vacuum distillation to 5 ml and allowed to stand at room temperature overnight to yield compound (II) as colourless crystals (m.p.: 473–475 K). 1H NMR (DMSO-d6, 500.13 MHz): δ 1.20 (d, 6H, CH3, J = 7.8 Hz), 2.52–2.56 (m, 1H, CH), 3.18 (s, 4H, piperazine-H), 3.24 (s, 4H, piperazine-H), 6.88–7.02 (m, 3H, Ar—H), 7.20–7.22 (m, 2H, Ar—H), 8.04–8.08 (m, 2H, NH2), 11.02 (s, 1H, NH). 13C NMR (DMSO-d6, 125.76 MHz): δ 19.98 (CH3), 27.0 (CH), 44.50, 47.98 (piperazine-C), 116.16, 119.80, 129.04, 150.0 (Ar—C), 110.82, 152.30, 154.04, 164.06 (pyrimidine-C).
6. Refinement
Crystal data, data collection and structure . The H atoms were included in calculated positions and treated as riding atoms: N—H = 0.86–0.90 Å, C—H = 0.95–1.00 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(N,C) for other H atoms.
details are summarized in Table 3
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Supporting information
https://doi.org/10.1107/S2056989015013298/su5162sup1.cif
contains datablocks I, II, Global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989015013298/su5162Isup2.hkl
Structure factors: contains datablock II. DOI: https://doi.org/10.1107/S2056989015013298/su5162IIsup3.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989015013298/su5162Isup4.cml
Supporting information file. DOI: https://doi.org/10.1107/S2056989015013298/su5162IIsup5.cml
For both compounds, data collection: CrysAlis PRO (Agilent, 2014); cell
CrysAlis PRO (Agilent, 2014); data reduction: CrysAlis PRO (Agilent, 2014); program(s) used to solve structure: SIR2011 (Burla et al., 2012); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015), PLATON (Spek, 2009) and publCIF (Westrip, 2010).C10H15N2+·C6H6ClN2O2− | F(000) = 1424 |
Mr = 336.82 | Dx = 1.319 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 21.676 (1) Å | Cell parameters from 2418 reflections |
b = 7.6446 (5) Å | θ = 4.1–70.3° |
c = 20.5444 (8) Å | µ = 2.12 mm−1 |
β = 95.065 (5)° | T = 293 K |
V = 3391.0 (3) Å3 | Prism, colourless |
Z = 8 | 0.17 × 0.08 × 0.06 mm |
Agilent Xcalibur Ruby Gemini diffractometer | 6532 independent reflections |
Radiation source: Enhance (Cu) X-ray Source | 3596 reflections with I > 2σ(I) |
Detector resolution: 10.2673 pixels mm-1 | Rint = 0.135 |
ω scans | θmax = 70.7°, θmin = 4.1° |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014) | h = −26→26 |
Tmin = 0.809, Tmax = 0.880 | k = −9→9 |
32461 measured reflections | l = −21→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.066 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.185 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0563P)2] where P = (Fo2 + 2Fc2)/3 |
6457 reflections | (Δ/σ)max = 0.001 |
415 parameters | Δρmax = 0.42 e Å−3 |
0 restraints | Δρmin = −0.36 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl2 | 1.13235 (5) | 0.04012 (14) | 0.82294 (5) | 0.0408 (3) | |
Cl1 | 0.65035 (5) | −0.09582 (15) | 0.82219 (5) | 0.0437 (3) | |
O1 | 0.51594 (14) | −0.6011 (4) | 0.82514 (13) | 0.0381 (7) | |
O2 | 0.55114 (13) | −0.3192 (4) | 1.02030 (13) | 0.0344 (7) | |
O3 | 1.04166 (14) | 0.2995 (4) | 1.02077 (13) | 0.0378 (7) | |
N1 | 0.53525 (15) | −0.4583 (4) | 0.92238 (15) | 0.0288 (8) | |
H1 | 0.5119 | −0.5322 | 0.9401 | 0.035* | |
O4 | 1.02351 (14) | 0.5927 (4) | 0.82725 (14) | 0.0415 (8) | |
N7 | 1.03409 (15) | 0.4421 (4) | 0.92325 (15) | 0.0306 (8) | |
H7 | 1.0140 | 0.5236 | 0.9410 | 0.037* | |
N2 | 0.57984 (15) | −0.3662 (4) | 0.82841 (15) | 0.0301 (8) | |
N8 | 1.07502 (16) | 0.3338 (5) | 0.82954 (16) | 0.0330 (8) | |
N3 | 0.56236 (15) | 0.6236 (4) | 0.69138 (16) | 0.0320 (8) | |
H3A | 0.5695 | 0.6194 | 0.7347 | 0.038* | |
H3B | 0.5338 | 0.7053 | 0.6817 | 0.038* | |
N4 | 0.64335 (15) | 0.3661 (5) | 0.64533 (16) | 0.0330 (8) | |
N5 | 0.86014 (15) | 0.0992 (4) | 0.85634 (16) | 0.0325 (8) | |
N6 | 0.93121 (15) | −0.1748 (4) | 0.80703 (16) | 0.0337 (8) | |
H6A | 0.9565 | −0.2655 | 0.8153 | 0.040* | |
H6B | 0.9245 | −0.1637 | 0.7639 | 0.040* | |
C1 | 0.54296 (19) | −0.4798 (5) | 0.85679 (19) | 0.0313 (9) | |
C18 | 1.05419 (19) | 0.3021 (5) | 0.9626 (2) | 0.0328 (10) | |
C17 | 1.04364 (19) | 0.4618 (6) | 0.85811 (19) | 0.0313 (9) | |
C4 | 0.60638 (18) | −0.2374 (5) | 0.8663 (2) | 0.0315 (9) | |
C2 | 0.56213 (18) | −0.3272 (5) | 0.9617 (2) | 0.0308 (9) | |
C20 | 1.09503 (18) | 0.1988 (5) | 0.8674 (2) | 0.0309 (9) | |
C11 | 0.68606 (18) | 0.2301 (5) | 0.6354 (2) | 0.0311 (9) | |
C9 | 0.6682 (2) | 0.5311 (5) | 0.6731 (2) | 0.0345 (10) | |
H9A | 0.7051 | 0.5634 | 0.6524 | 0.041* | |
H9B | 0.6796 | 0.5166 | 0.7195 | 0.041* | |
C27 | 0.82314 (18) | 0.2433 (5) | 0.8709 (2) | 0.0315 (9) | |
C3 | 0.60166 (18) | −0.2074 (5) | 0.93082 (19) | 0.0301 (9) | |
C25 | 0.82936 (19) | −0.0520 (5) | 0.8253 (2) | 0.0341 (10) | |
H25A | 0.8201 | −0.0296 | 0.7789 | 0.041* | |
H25B | 0.7907 | −0.0736 | 0.8443 | 0.041* | |
C19 | 1.08842 (19) | 0.1695 (5) | 0.93181 (19) | 0.0316 (9) | |
C23 | 0.96153 (19) | −0.0141 (6) | 0.8346 (2) | 0.0357 (10) | |
H23A | 0.9982 | 0.0104 | 0.8123 | 0.043* | |
H23B | 0.9742 | −0.0317 | 0.8806 | 0.043* | |
C21 | 1.1136 (2) | 0.0116 (6) | 0.9694 (2) | 0.0377 (10) | |
H21A | 1.1044 | −0.0924 | 0.9433 | 0.045* | |
H21B | 1.0928 | 0.0007 | 1.0091 | 0.045* | |
C28 | 0.7616 (2) | 0.2637 (6) | 0.8454 (2) | 0.0397 (11) | |
H28 | 0.7448 | 0.1857 | 0.8139 | 0.048* | |
C10 | 0.62039 (19) | 0.6734 (5) | 0.6625 (2) | 0.0336 (10) | |
H10A | 0.6365 | 0.7809 | 0.6825 | 0.040* | |
H10B | 0.6116 | 0.6941 | 0.6161 | 0.040* | |
C5 | 0.6318 (2) | −0.0569 (5) | 0.9687 (2) | 0.0359 (10) | |
H5A | 0.6721 | −0.0353 | 0.9533 | 0.043* | |
H5B | 0.6381 | −0.0893 | 1.0145 | 0.043* | |
C7 | 0.53832 (19) | 0.4524 (6) | 0.6672 (2) | 0.0378 (10) | |
H7A | 0.5248 | 0.4610 | 0.6211 | 0.045* | |
H7B | 0.5029 | 0.4196 | 0.6903 | 0.045* | |
C16 | 0.74788 (19) | 0.2396 (6) | 0.6587 (2) | 0.0357 (10) | |
H16 | 0.7618 | 0.3334 | 0.6849 | 0.043* | |
C15 | 0.7893 (2) | 0.1105 (6) | 0.6436 (2) | 0.0412 (11) | |
H15 | 0.8308 | 0.1192 | 0.6592 | 0.049* | |
C26 | 0.87103 (19) | −0.2105 (6) | 0.8348 (2) | 0.0371 (10) | |
H26A | 0.8784 | −0.2368 | 0.8811 | 0.044* | |
H26B | 0.8511 | −0.3110 | 0.8132 | 0.044* | |
C12 | 0.6660 (2) | 0.0859 (6) | 0.5972 (2) | 0.0369 (10) | |
H12 | 0.6246 | 0.0765 | 0.5812 | 0.044* | |
C8 | 0.58805 (18) | 0.3138 (5) | 0.6776 (2) | 0.0344 (10) | |
H8A | 0.5991 | 0.2979 | 0.7240 | 0.041* | |
H8B | 0.5724 | 0.2033 | 0.6597 | 0.041* | |
C32 | 0.8473 (2) | 0.3663 (5) | 0.9167 (2) | 0.0374 (10) | |
H32 | 0.8884 | 0.3573 | 0.9337 | 0.045* | |
C24 | 0.91766 (19) | 0.1391 (6) | 0.8266 (2) | 0.0362 (10) | |
H24A | 0.9370 | 0.2417 | 0.8473 | 0.043* | |
H24B | 0.9083 | 0.1645 | 0.7805 | 0.043* | |
C29 | 0.7254 (2) | 0.3984 (7) | 0.8662 (2) | 0.0480 (12) | |
H29 | 0.6843 | 0.4089 | 0.8493 | 0.058* | |
C31 | 0.8113 (2) | 0.4999 (6) | 0.9369 (2) | 0.0442 (12) | |
H31 | 0.8282 | 0.5796 | 0.9677 | 0.053* | |
C13 | 0.7077 (2) | −0.0424 (6) | 0.5832 (2) | 0.0423 (11) | |
H13 | 0.6938 | −0.1384 | 0.5582 | 0.051* | |
C22 | 1.1830 (2) | 0.0208 (6) | 0.9874 (2) | 0.0433 (11) | |
H22A | 1.1963 | −0.0826 | 1.0111 | 0.065* | |
H22B | 1.2040 | 0.0288 | 0.9483 | 0.065* | |
H22C | 1.1924 | 0.1219 | 1.0141 | 0.065* | |
C14 | 0.7692 (2) | −0.0311 (6) | 0.6054 (2) | 0.0450 (12) | |
H14 | 0.7970 | −0.1173 | 0.5948 | 0.054* | |
C30 | 0.7503 (2) | 0.5173 (6) | 0.9120 (2) | 0.0487 (13) | |
H30 | 0.7261 | 0.6082 | 0.9259 | 0.058* | |
C6 | 0.5943 (2) | 0.1094 (6) | 0.9627 (2) | 0.0529 (13) | |
H6C | 0.6158 | 0.2002 | 0.9878 | 0.079* | |
H6D | 0.5887 | 0.1440 | 0.9177 | 0.079* | |
H6E | 0.5546 | 0.0899 | 0.9788 | 0.079* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl2 | 0.0470 (6) | 0.0405 (6) | 0.0359 (6) | 0.0097 (5) | 0.0099 (5) | −0.0029 (5) |
Cl1 | 0.0503 (7) | 0.0474 (7) | 0.0347 (6) | −0.0174 (5) | 0.0101 (5) | 0.0010 (5) |
O1 | 0.0488 (18) | 0.0360 (17) | 0.0301 (16) | −0.0110 (14) | 0.0063 (14) | −0.0051 (13) |
O2 | 0.0396 (17) | 0.0410 (17) | 0.0226 (15) | −0.0075 (13) | 0.0030 (13) | 0.0008 (12) |
O3 | 0.0446 (18) | 0.0400 (18) | 0.0299 (16) | 0.0085 (14) | 0.0087 (14) | 0.0022 (13) |
N1 | 0.0337 (18) | 0.0299 (18) | 0.0231 (17) | −0.0075 (15) | 0.0036 (14) | 0.0018 (14) |
O4 | 0.0462 (19) | 0.0444 (19) | 0.0349 (17) | 0.0130 (15) | 0.0087 (14) | 0.0079 (14) |
N7 | 0.0323 (18) | 0.033 (2) | 0.0266 (18) | 0.0058 (15) | 0.0057 (15) | −0.0034 (15) |
N2 | 0.0301 (18) | 0.036 (2) | 0.0244 (17) | −0.0008 (15) | 0.0033 (14) | 0.0004 (15) |
N8 | 0.0331 (19) | 0.036 (2) | 0.0305 (19) | 0.0011 (16) | 0.0053 (15) | −0.0007 (16) |
N3 | 0.0349 (19) | 0.0336 (19) | 0.0280 (18) | 0.0064 (15) | 0.0052 (15) | −0.0001 (15) |
N4 | 0.0304 (19) | 0.033 (2) | 0.0355 (19) | −0.0054 (15) | 0.0046 (15) | −0.0023 (16) |
N5 | 0.0297 (18) | 0.0307 (19) | 0.038 (2) | 0.0003 (15) | 0.0089 (16) | −0.0023 (16) |
N6 | 0.038 (2) | 0.035 (2) | 0.0287 (19) | 0.0004 (16) | 0.0042 (16) | −0.0002 (15) |
C1 | 0.032 (2) | 0.033 (2) | 0.028 (2) | −0.0028 (18) | 0.0043 (18) | 0.0009 (18) |
C18 | 0.035 (2) | 0.032 (2) | 0.032 (2) | −0.0007 (18) | 0.0079 (19) | 0.0012 (18) |
C17 | 0.032 (2) | 0.035 (2) | 0.028 (2) | 0.0040 (18) | 0.0048 (18) | 0.0007 (18) |
C4 | 0.027 (2) | 0.035 (2) | 0.033 (2) | −0.0055 (17) | 0.0018 (18) | 0.0043 (18) |
C2 | 0.029 (2) | 0.031 (2) | 0.032 (2) | 0.0002 (17) | 0.0011 (18) | 0.0027 (18) |
C20 | 0.028 (2) | 0.033 (2) | 0.032 (2) | 0.0001 (18) | 0.0054 (18) | −0.0055 (18) |
C11 | 0.029 (2) | 0.033 (2) | 0.032 (2) | 0.0018 (18) | 0.0075 (18) | 0.0018 (18) |
C9 | 0.039 (2) | 0.029 (2) | 0.036 (2) | −0.0052 (19) | 0.009 (2) | −0.0006 (19) |
C27 | 0.031 (2) | 0.033 (2) | 0.031 (2) | −0.0006 (18) | 0.0070 (18) | 0.0058 (18) |
C3 | 0.031 (2) | 0.033 (2) | 0.026 (2) | −0.0006 (17) | −0.0008 (17) | 0.0012 (17) |
C25 | 0.032 (2) | 0.038 (2) | 0.032 (2) | −0.0057 (19) | 0.0044 (18) | 0.0012 (19) |
C19 | 0.034 (2) | 0.032 (2) | 0.029 (2) | 0.0009 (18) | 0.0051 (18) | 0.0000 (18) |
C23 | 0.031 (2) | 0.039 (3) | 0.038 (2) | −0.0023 (19) | 0.0063 (19) | −0.006 (2) |
C21 | 0.042 (3) | 0.038 (2) | 0.035 (2) | 0.006 (2) | 0.010 (2) | 0.004 (2) |
C28 | 0.039 (2) | 0.044 (3) | 0.037 (3) | 0.004 (2) | 0.006 (2) | −0.001 (2) |
C10 | 0.041 (2) | 0.033 (2) | 0.027 (2) | 0.0013 (19) | 0.0050 (19) | 0.0011 (18) |
C5 | 0.041 (2) | 0.039 (3) | 0.028 (2) | −0.009 (2) | 0.0027 (19) | 0.0014 (19) |
C7 | 0.031 (2) | 0.044 (3) | 0.038 (2) | 0.004 (2) | 0.0009 (19) | −0.003 (2) |
C16 | 0.034 (2) | 0.038 (2) | 0.036 (2) | 0.0002 (19) | 0.0054 (19) | −0.0014 (19) |
C15 | 0.036 (2) | 0.045 (3) | 0.043 (3) | 0.006 (2) | 0.008 (2) | 0.004 (2) |
C26 | 0.038 (2) | 0.039 (3) | 0.034 (2) | −0.006 (2) | 0.007 (2) | −0.0022 (19) |
C12 | 0.040 (2) | 0.037 (2) | 0.034 (2) | 0.000 (2) | 0.0024 (19) | 0.0026 (19) |
C8 | 0.035 (2) | 0.031 (2) | 0.038 (2) | −0.0043 (19) | 0.0045 (19) | −0.0033 (19) |
C32 | 0.039 (2) | 0.033 (2) | 0.041 (3) | −0.0047 (19) | 0.011 (2) | −0.002 (2) |
C24 | 0.032 (2) | 0.041 (3) | 0.037 (2) | −0.0063 (19) | 0.0111 (19) | −0.002 (2) |
C29 | 0.044 (3) | 0.055 (3) | 0.045 (3) | 0.015 (2) | 0.006 (2) | 0.005 (2) |
C31 | 0.055 (3) | 0.037 (3) | 0.043 (3) | −0.001 (2) | 0.017 (2) | −0.003 (2) |
C13 | 0.058 (3) | 0.034 (2) | 0.037 (3) | −0.004 (2) | 0.014 (2) | −0.006 (2) |
C22 | 0.042 (3) | 0.046 (3) | 0.043 (3) | 0.005 (2) | 0.007 (2) | 0.009 (2) |
C14 | 0.053 (3) | 0.037 (3) | 0.047 (3) | 0.010 (2) | 0.017 (2) | 0.002 (2) |
C30 | 0.056 (3) | 0.045 (3) | 0.047 (3) | 0.017 (2) | 0.019 (3) | 0.005 (2) |
C6 | 0.065 (3) | 0.040 (3) | 0.051 (3) | 0.002 (2) | −0.008 (3) | −0.010 (2) |
Cl2—C20 | 1.758 (4) | C19—C21 | 1.509 (6) |
Cl1—C4 | 1.747 (4) | C23—C24 | 1.508 (6) |
O1—C1 | 1.249 (5) | C23—H23A | 0.9700 |
O2—C2 | 1.248 (5) | C23—H23B | 0.9700 |
O3—C18 | 1.249 (5) | C21—C22 | 1.517 (6) |
N1—C1 | 1.382 (5) | C21—H21A | 0.9700 |
N1—C2 | 1.384 (5) | C21—H21B | 0.9700 |
N1—H1 | 0.8600 | C28—C29 | 1.386 (6) |
O4—C17 | 1.243 (5) | C28—H28 | 0.9300 |
N7—C17 | 1.380 (5) | C10—H10A | 0.9700 |
N7—C18 | 1.388 (5) | C10—H10B | 0.9700 |
N7—H7 | 0.8600 | C5—C6 | 1.508 (6) |
N2—C1 | 1.347 (5) | C5—H5A | 0.9700 |
N2—C4 | 1.351 (5) | C5—H5B | 0.9700 |
N8—C20 | 1.342 (5) | C7—C8 | 1.513 (6) |
N8—C17 | 1.354 (5) | C7—H7A | 0.9700 |
N3—C7 | 1.478 (5) | C7—H7B | 0.9700 |
N3—C10 | 1.487 (5) | C16—C15 | 1.388 (6) |
N3—H3A | 0.8900 | C16—H16 | 0.9300 |
N3—H3B | 0.8900 | C15—C14 | 1.385 (7) |
N4—C11 | 1.419 (5) | C15—H15 | 0.9300 |
N4—C9 | 1.467 (5) | C26—H26A | 0.9700 |
N4—C8 | 1.475 (5) | C26—H26B | 0.9700 |
N5—C27 | 1.410 (5) | C12—C13 | 1.380 (6) |
N5—C25 | 1.454 (5) | C12—H12 | 0.9300 |
N5—C24 | 1.468 (5) | C8—H8A | 0.9700 |
N6—C23 | 1.482 (5) | C8—H8B | 0.9700 |
N6—C26 | 1.495 (5) | C32—C31 | 1.371 (6) |
N6—H6A | 0.8900 | C32—H32 | 0.9300 |
N6—H6B | 0.8900 | C24—H24A | 0.9700 |
C18—C19 | 1.436 (6) | C24—H24B | 0.9700 |
C4—C3 | 1.359 (6) | C29—C30 | 1.383 (7) |
C2—C3 | 1.440 (6) | C29—H29 | 0.9300 |
C20—C19 | 1.362 (6) | C31—C30 | 1.383 (7) |
C11—C16 | 1.385 (6) | C31—H31 | 0.9300 |
C11—C12 | 1.400 (6) | C13—C14 | 1.374 (7) |
C9—C10 | 1.505 (6) | C13—H13 | 0.9300 |
C9—H9A | 0.9700 | C22—H22A | 0.9600 |
C9—H9B | 0.9700 | C22—H22B | 0.9600 |
C27—C28 | 1.398 (6) | C22—H22C | 0.9600 |
C27—C32 | 1.399 (6) | C14—H14 | 0.9300 |
C3—C5 | 1.505 (6) | C30—H30 | 0.9300 |
C25—C26 | 1.514 (6) | C6—H6C | 0.9600 |
C25—H25A | 0.9700 | C6—H6D | 0.9600 |
C25—H25B | 0.9700 | C6—H6E | 0.9600 |
C1—N1—C2 | 125.1 (3) | H21A—C21—H21B | 107.8 |
C1—N1—H1 | 117.5 | C29—C28—C27 | 121.0 (5) |
C2—N1—H1 | 117.5 | C29—C28—H28 | 119.5 |
C17—N7—C18 | 125.6 (3) | C27—C28—H28 | 119.5 |
C17—N7—H7 | 117.2 | N3—C10—C9 | 110.7 (3) |
C18—N7—H7 | 117.2 | N3—C10—H10A | 109.5 |
C1—N2—C4 | 117.3 (3) | C9—C10—H10A | 109.5 |
C20—N8—C17 | 117.0 (3) | N3—C10—H10B | 109.5 |
C7—N3—C10 | 112.2 (3) | C9—C10—H10B | 109.5 |
C7—N3—H3A | 109.2 | H10A—C10—H10B | 108.1 |
C10—N3—H3A | 109.2 | C3—C5—C6 | 113.3 (4) |
C7—N3—H3B | 109.2 | C3—C5—H5A | 108.9 |
C10—N3—H3B | 109.2 | C6—C5—H5A | 108.9 |
H3A—N3—H3B | 107.9 | C3—C5—H5B | 108.9 |
C11—N4—C9 | 117.6 (3) | C6—C5—H5B | 108.9 |
C11—N4—C8 | 115.6 (3) | H5A—C5—H5B | 107.7 |
C9—N4—C8 | 110.1 (3) | N3—C7—C8 | 110.3 (3) |
C27—N5—C25 | 117.8 (3) | N3—C7—H7A | 109.6 |
C27—N5—C24 | 116.5 (3) | C8—C7—H7A | 109.6 |
C25—N5—C24 | 110.9 (3) | N3—C7—H7B | 109.6 |
C23—N6—C26 | 112.2 (3) | C8—C7—H7B | 109.6 |
C23—N6—H6A | 109.2 | H7A—C7—H7B | 108.1 |
C26—N6—H6A | 109.2 | C11—C16—C15 | 120.8 (4) |
C23—N6—H6B | 109.2 | C11—C16—H16 | 119.6 |
C26—N6—H6B | 109.2 | C15—C16—H16 | 119.6 |
H6A—N6—H6B | 107.9 | C14—C15—C16 | 120.3 (4) |
O1—C1—N2 | 121.5 (4) | C14—C15—H15 | 119.8 |
O1—C1—N1 | 120.3 (4) | C16—C15—H15 | 119.8 |
N2—C1—N1 | 118.2 (4) | N6—C26—C25 | 109.6 (3) |
O3—C18—N7 | 119.1 (4) | N6—C26—H26A | 109.8 |
O3—C18—C19 | 125.1 (4) | C25—C26—H26A | 109.8 |
N7—C18—C19 | 115.8 (3) | N6—C26—H26B | 109.8 |
O4—C17—N8 | 121.8 (4) | C25—C26—H26B | 109.8 |
O4—C17—N7 | 120.4 (4) | H26A—C26—H26B | 108.2 |
N8—C17—N7 | 117.8 (4) | C13—C12—C11 | 120.0 (4) |
N2—C4—C3 | 128.3 (4) | C13—C12—H12 | 120.0 |
N2—C4—Cl1 | 112.1 (3) | C11—C12—H12 | 120.0 |
C3—C4—Cl1 | 119.5 (3) | N4—C8—C7 | 110.1 (3) |
O2—C2—N1 | 119.5 (4) | N4—C8—H8A | 109.6 |
O2—C2—C3 | 124.5 (4) | C7—C8—H8A | 109.6 |
N1—C2—C3 | 116.1 (3) | N4—C8—H8B | 109.6 |
N8—C20—C19 | 129.3 (4) | C7—C8—H8B | 109.6 |
N8—C20—Cl2 | 111.7 (3) | H8A—C8—H8B | 108.2 |
C19—C20—Cl2 | 119.0 (3) | C31—C32—C27 | 121.1 (4) |
C16—C11—C12 | 118.5 (4) | C31—C32—H32 | 119.5 |
C16—C11—N4 | 122.4 (4) | C27—C32—H32 | 119.5 |
C12—C11—N4 | 118.9 (4) | N5—C24—C23 | 110.1 (3) |
N4—C9—C10 | 109.9 (4) | N5—C24—H24A | 109.6 |
N4—C9—H9A | 109.7 | C23—C24—H24A | 109.6 |
C10—C9—H9A | 109.7 | N5—C24—H24B | 109.6 |
N4—C9—H9B | 109.7 | C23—C24—H24B | 109.6 |
C10—C9—H9B | 109.7 | H24A—C24—H24B | 108.1 |
H9A—C9—H9B | 108.2 | C30—C29—C28 | 120.1 (5) |
C28—C27—C32 | 117.7 (4) | C30—C29—H29 | 120.0 |
C28—C27—N5 | 123.4 (4) | C28—C29—H29 | 120.0 |
C32—C27—N5 | 118.8 (4) | C32—C31—C30 | 120.7 (5) |
C4—C3—C2 | 115.0 (4) | C32—C31—H31 | 119.6 |
C4—C3—C5 | 124.6 (4) | C30—C31—H31 | 119.6 |
C2—C3—C5 | 120.4 (3) | C14—C13—C12 | 121.3 (4) |
N5—C25—C26 | 109.5 (4) | C14—C13—H13 | 119.3 |
N5—C25—H25A | 109.8 | C12—C13—H13 | 119.3 |
C26—C25—H25A | 109.8 | C21—C22—H22A | 109.5 |
N5—C25—H25B | 109.8 | C21—C22—H22B | 109.5 |
C26—C25—H25B | 109.8 | H22A—C22—H22B | 109.5 |
H25A—C25—H25B | 108.2 | C21—C22—H22C | 109.5 |
C20—C19—C18 | 114.5 (4) | H22A—C22—H22C | 109.5 |
C20—C19—C21 | 124.4 (4) | H22B—C22—H22C | 109.5 |
C18—C19—C21 | 121.1 (4) | C13—C14—C15 | 119.0 (4) |
N6—C23—C24 | 110.4 (4) | C13—C14—H14 | 120.5 |
N6—C23—H23A | 109.6 | C15—C14—H14 | 120.5 |
C24—C23—H23A | 109.6 | C29—C30—C31 | 119.4 (4) |
N6—C23—H23B | 109.6 | C29—C30—H30 | 120.3 |
C24—C23—H23B | 109.6 | C31—C30—H30 | 120.3 |
H23A—C23—H23B | 108.1 | C5—C6—H6C | 109.5 |
C19—C21—C22 | 113.2 (4) | C5—C6—H6D | 109.5 |
C19—C21—H21A | 108.9 | H6C—C6—H6D | 109.5 |
C22—C21—H21A | 108.9 | C5—C6—H6E | 109.5 |
C19—C21—H21B | 108.9 | H6C—C6—H6E | 109.5 |
C22—C21—H21B | 108.9 | H6D—C6—H6E | 109.5 |
C4—N2—C1—O1 | 179.0 (4) | N8—C20—C19—C21 | −179.6 (4) |
C4—N2—C1—N1 | −0.6 (6) | Cl2—C20—C19—C21 | 2.8 (6) |
C2—N1—C1—O1 | −178.9 (4) | O3—C18—C19—C20 | 178.5 (4) |
C2—N1—C1—N2 | 0.7 (6) | N7—C18—C19—C20 | −1.4 (6) |
C17—N7—C18—O3 | −179.1 (4) | O3—C18—C19—C21 | −0.9 (7) |
C17—N7—C18—C19 | 0.9 (6) | N7—C18—C19—C21 | 179.2 (4) |
C20—N8—C17—O4 | 179.6 (4) | C26—N6—C23—C24 | −53.9 (5) |
C20—N8—C17—N7 | −0.8 (6) | C20—C19—C21—C22 | 76.2 (6) |
C18—N7—C17—O4 | 179.9 (4) | C18—C19—C21—C22 | −104.4 (5) |
C18—N7—C17—N8 | 0.3 (6) | C32—C27—C28—C29 | −1.8 (6) |
C1—N2—C4—C3 | 1.1 (7) | N5—C27—C28—C29 | 173.5 (4) |
C1—N2—C4—Cl1 | −177.7 (3) | C7—N3—C10—C9 | −54.1 (4) |
C1—N1—C2—O2 | 179.0 (4) | N4—C9—C10—N3 | 56.9 (4) |
C1—N1—C2—C3 | −1.0 (6) | C4—C3—C5—C6 | 84.3 (5) |
C17—N8—C20—C19 | 0.1 (7) | C2—C3—C5—C6 | −92.5 (5) |
C17—N8—C20—Cl2 | 177.9 (3) | C10—N3—C7—C8 | 53.7 (4) |
C9—N4—C11—C16 | 8.8 (6) | C12—C11—C16—C15 | 1.2 (6) |
C8—N4—C11—C16 | −124.1 (4) | N4—C11—C16—C15 | −174.7 (4) |
C9—N4—C11—C12 | −167.1 (4) | C11—C16—C15—C14 | −0.7 (7) |
C8—N4—C11—C12 | 60.0 (5) | C23—N6—C26—C25 | 54.9 (5) |
C11—N4—C9—C10 | 164.1 (3) | N5—C25—C26—N6 | −58.0 (4) |
C8—N4—C9—C10 | −60.6 (4) | C16—C11—C12—C13 | −0.4 (6) |
C25—N5—C27—C28 | −13.7 (6) | N4—C11—C12—C13 | 175.6 (4) |
C24—N5—C27—C28 | 121.7 (4) | C11—N4—C8—C7 | −163.1 (4) |
C25—N5—C27—C32 | 161.5 (4) | C9—N4—C8—C7 | 60.6 (4) |
C24—N5—C27—C32 | −63.1 (5) | N3—C7—C8—N4 | −56.5 (4) |
N2—C4—C3—C2 | −1.4 (7) | C28—C27—C32—C31 | 1.5 (6) |
Cl1—C4—C3—C2 | 177.3 (3) | N5—C27—C32—C31 | −174.0 (4) |
N2—C4—C3—C5 | −178.3 (4) | C27—N5—C24—C23 | 161.1 (4) |
Cl1—C4—C3—C5 | 0.4 (6) | C25—N5—C24—C23 | −60.5 (5) |
O2—C2—C3—C4 | −178.8 (4) | N6—C23—C24—N5 | 55.5 (4) |
N1—C2—C3—C4 | 1.2 (6) | C27—C28—C29—C30 | 1.2 (7) |
O2—C2—C3—C5 | −1.7 (6) | C27—C32—C31—C30 | −0.6 (7) |
N1—C2—C3—C5 | 178.3 (4) | C11—C12—C13—C14 | −0.8 (7) |
C27—N5—C25—C26 | −160.5 (3) | C12—C13—C14—C15 | 1.3 (7) |
C24—N5—C25—C26 | 61.7 (4) | C16—C15—C14—C13 | −0.5 (7) |
N8—C20—C19—C18 | 1.1 (7) | C28—C29—C30—C31 | −0.3 (7) |
Cl2—C20—C19—C18 | −176.5 (3) | C32—C31—C30—C29 | 0.0 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.86 | 2.00 | 2.859 (4) | 173 |
N3—H3A···O1ii | 0.89 | 2.83 | 3.465 (4) | 129 |
N6—H6A···O4iii | 0.89 | 1.81 | 2.681 (5) | 165 |
N7—H7···O3iv | 0.86 | 2.02 | 2.873 (4) | 174 |
N3—H3A···N2ii | 0.89 | 1.92 | 2.808 (4) | 174 |
N6—H6B···N8v | 0.89 | 1.92 | 2.798 (5) | 169 |
C10—H10B···O2vi | 0.97 | 2.46 | 3.355 (5) | 154 |
C26—H26A···O3vii | 0.97 | 2.58 | 3.444 (5) | 147 |
C16—H16···Cl2viii | 0.93 | 2.80 | 3.462 (4) | 129 |
Symmetry codes: (i) −x+1, −y−1, −z+2; (ii) x, y+1, z; (iii) x, y−1, z; (iv) −x+2, −y+1, −z+2; (v) −x+2, y−1/2, −z+3/2; (vi) x, −y+1/2, z−1/2; (vii) −x+2, −y, −z+2; (viii) −x+2, y+1/2, −z+3/2. |
C10H15N2+·C7H8ClN2O2− | F(000) = 1488 |
Mr = 350.84 | Dx = 1.318 Mg m−3 |
Monoclinic, I2/a | Cu Kα radiation, λ = 1.5418 Å |
a = 20.5012 (3) Å | Cell parameters from 6927 reflections |
b = 7.4565 (1) Å | θ = 3.8–70.0° |
c = 23.1414 (3) Å | µ = 2.05 mm−1 |
β = 90.639 (1)° | T = 101 K |
V = 3537.34 (8) Å3 | Prism, colourless |
Z = 8 | 0.34 × 0.13 × 0.09 mm |
Agilent Xcalibur Ruby Gemini diffractometer | 2926 reflections with I > 2σ(I) |
Detector resolution: 10.2673 pixels mm-1 | Rint = 0.069 |
ω scans | θmax = 70.6°, θmin = 3.8° |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014) | h = −24→25 |
Tmin = 0.760, Tmax = 0.828 | k = −9→7 |
13174 measured reflections | l = −27→28 |
3396 independent reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.122 | w = 1/[σ2(Fo2) + (0.0585P)2 + 3.6877P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
3346 reflections | Δρmax = 0.55 e Å−3 |
217 parameters | Δρmin = −0.56 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.43825 (2) | 0.80800 (7) | 0.38729 (2) | 0.03420 (17) | |
O1 | 0.42855 (6) | 1.32956 (18) | 0.26398 (6) | 0.0286 (3) | |
O2 | 0.23184 (6) | 1.07264 (19) | 0.29852 (6) | 0.0288 (3) | |
N3 | 0.33106 (7) | 1.1946 (2) | 0.28125 (6) | 0.0227 (3) | |
H3 | 0.3124 | 1.2711 | 0.2587 | 0.027* | |
N4 | 0.42771 (7) | 1.0889 (2) | 0.32365 (6) | 0.0228 (3) | |
N2 | 0.56397 (7) | 1.1049 (2) | 0.31180 (6) | 0.0246 (3) | |
H3N | 0.5734 | 1.0238 | 0.2849 | 0.029* | |
H2N | 0.5208 | 1.1087 | 0.3152 | 0.029* | |
C11 | 0.39765 (9) | 1.2092 (2) | 0.28906 (7) | 0.0228 (4) | |
N1 | 0.60877 (7) | 1.3622 (2) | 0.39443 (6) | 0.0230 (3) | |
C2 | 0.58171 (9) | 1.1911 (2) | 0.41332 (8) | 0.0237 (4) | |
H2A | 0.5352 | 1.2036 | 0.4195 | 0.028* | |
H2B | 0.6020 | 1.1556 | 0.4496 | 0.028* | |
C4 | 0.58796 (10) | 1.2834 (3) | 0.29310 (8) | 0.0271 (4) | |
H4A | 0.5649 | 1.3201 | 0.2582 | 0.032* | |
H4B | 0.6341 | 1.2760 | 0.2845 | 0.032* | |
C14 | 0.39071 (9) | 0.9583 (2) | 0.34646 (7) | 0.0236 (4) | |
C12 | 0.29194 (9) | 1.0666 (3) | 0.30679 (7) | 0.0232 (4) | |
C6 | 0.58544 (9) | 1.4868 (3) | 0.49109 (8) | 0.0273 (4) | |
H6 | 0.5581 | 1.3906 | 0.4992 | 0.033* | |
C13 | 0.32496 (9) | 0.9324 (2) | 0.34113 (7) | 0.0231 (4) | |
C3 | 0.59378 (9) | 1.0490 (3) | 0.36799 (8) | 0.0245 (4) | |
H3A | 0.6403 | 1.0318 | 0.3634 | 0.029* | |
H3B | 0.5750 | 0.9361 | 0.3802 | 0.029* | |
C10 | 0.65511 (9) | 1.6458 (3) | 0.42609 (8) | 0.0272 (4) | |
H10 | 0.6749 | 1.6571 | 0.3903 | 0.033* | |
C15 | 0.28407 (10) | 0.7802 (3) | 0.36508 (8) | 0.0286 (4) | |
H15 | 0.2393 | 0.8063 | 0.3523 | 0.034* | |
C5 | 0.61534 (9) | 1.4980 (2) | 0.43717 (8) | 0.0224 (4) | |
C8 | 0.63624 (10) | 1.7627 (3) | 0.52142 (9) | 0.0341 (5) | |
H8 | 0.6436 | 1.8500 | 0.5494 | 0.041* | |
C1 | 0.57729 (9) | 1.4207 (3) | 0.34016 (7) | 0.0249 (4) | |
H1A | 0.5953 | 1.5352 | 0.3284 | 0.030* | |
H1B | 0.5309 | 1.4365 | 0.3462 | 0.030* | |
C7 | 0.59623 (10) | 1.6182 (3) | 0.53262 (8) | 0.0332 (5) | |
H7 | 0.5763 | 1.6088 | 0.5684 | 0.040* | |
C9 | 0.66531 (10) | 1.7757 (3) | 0.46790 (9) | 0.0320 (5) | |
H9 | 0.6921 | 1.8731 | 0.4599 | 0.038* | |
C16 | 0.28114 (10) | 0.7739 (3) | 0.43025 (8) | 0.0310 (4) | |
H16A | 0.2708 | 0.8909 | 0.4448 | 0.047* | |
H16B | 0.2481 | 0.6902 | 0.4418 | 0.047* | |
H16C | 0.3227 | 0.7365 | 0.4456 | 0.047* | |
C17 | 0.30027 (12) | 0.6004 (3) | 0.33815 (9) | 0.0394 (5) | |
H17A | 0.3015 | 0.6125 | 0.2969 | 0.059* | |
H17B | 0.3421 | 0.5605 | 0.3522 | 0.059* | |
H17C | 0.2675 | 0.5143 | 0.3483 | 0.059* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0307 (3) | 0.0306 (3) | 0.0413 (3) | 0.00185 (19) | 0.0001 (2) | 0.0141 (2) |
O1 | 0.0225 (7) | 0.0278 (7) | 0.0355 (7) | −0.0043 (6) | 0.0020 (5) | 0.0107 (6) |
O2 | 0.0210 (6) | 0.0341 (8) | 0.0313 (7) | −0.0042 (6) | 0.0017 (5) | 0.0053 (6) |
N3 | 0.0210 (7) | 0.0233 (8) | 0.0238 (7) | −0.0013 (6) | 0.0012 (6) | 0.0032 (6) |
N4 | 0.0233 (7) | 0.0211 (8) | 0.0239 (7) | 0.0003 (6) | 0.0022 (6) | 0.0025 (6) |
N2 | 0.0227 (7) | 0.0256 (8) | 0.0255 (7) | 0.0009 (7) | 0.0023 (6) | −0.0055 (6) |
C11 | 0.0238 (9) | 0.0216 (9) | 0.0231 (8) | −0.0010 (7) | 0.0033 (7) | −0.0021 (7) |
N1 | 0.0261 (8) | 0.0203 (8) | 0.0225 (7) | 0.0005 (6) | 0.0007 (6) | 0.0002 (6) |
C2 | 0.0254 (9) | 0.0221 (9) | 0.0235 (8) | 0.0009 (7) | 0.0020 (7) | 0.0010 (7) |
C4 | 0.0302 (10) | 0.0284 (10) | 0.0226 (9) | −0.0025 (8) | 0.0023 (7) | −0.0003 (8) |
C14 | 0.0295 (9) | 0.0207 (9) | 0.0206 (8) | 0.0023 (8) | 0.0024 (7) | −0.0001 (7) |
C12 | 0.0255 (9) | 0.0244 (9) | 0.0198 (8) | −0.0036 (8) | 0.0043 (7) | −0.0030 (7) |
C6 | 0.0300 (10) | 0.0248 (10) | 0.0273 (9) | −0.0002 (8) | 0.0003 (8) | −0.0004 (8) |
C13 | 0.0287 (9) | 0.0209 (9) | 0.0198 (8) | −0.0031 (8) | 0.0042 (7) | −0.0022 (7) |
C3 | 0.0231 (9) | 0.0221 (9) | 0.0284 (9) | 0.0017 (7) | 0.0017 (7) | −0.0005 (7) |
C10 | 0.0241 (9) | 0.0254 (10) | 0.0322 (10) | 0.0019 (8) | 0.0017 (7) | −0.0005 (8) |
C15 | 0.0317 (10) | 0.0262 (10) | 0.0279 (9) | −0.0059 (8) | 0.0039 (8) | 0.0007 (8) |
C5 | 0.0201 (8) | 0.0211 (9) | 0.0260 (9) | 0.0053 (7) | −0.0028 (7) | −0.0015 (7) |
C8 | 0.0376 (11) | 0.0290 (11) | 0.0354 (10) | 0.0050 (9) | −0.0084 (9) | −0.0106 (9) |
C1 | 0.0284 (9) | 0.0236 (9) | 0.0227 (8) | 0.0002 (8) | 0.0006 (7) | 0.0016 (7) |
C7 | 0.0385 (11) | 0.0350 (11) | 0.0260 (9) | 0.0066 (9) | 0.0012 (8) | −0.0053 (8) |
C9 | 0.0273 (10) | 0.0241 (10) | 0.0445 (11) | −0.0005 (8) | −0.0056 (8) | −0.0034 (9) |
C16 | 0.0318 (10) | 0.0306 (11) | 0.0309 (10) | −0.0049 (9) | 0.0092 (8) | 0.0003 (8) |
C17 | 0.0492 (13) | 0.0299 (11) | 0.0396 (11) | −0.0130 (10) | 0.0139 (10) | −0.0048 (9) |
Cl1—C14 | 1.7544 (18) | C6—C7 | 1.389 (3) |
O1—C11 | 1.246 (2) | C6—C5 | 1.399 (3) |
O2—C12 | 1.246 (2) | C6—H6 | 0.9300 |
N3—C11 | 1.379 (2) | C13—C15 | 1.519 (3) |
N3—C12 | 1.383 (2) | C3—H3A | 0.9700 |
N3—H3 | 0.8600 | C3—H3B | 0.9700 |
N4—N4 | 0.000 (5) | C10—C9 | 1.383 (3) |
N4—C14 | 1.346 (2) | C10—C5 | 1.397 (3) |
N4—C11 | 1.347 (2) | C10—H10 | 0.9300 |
N2—C4 | 1.485 (2) | C15—C16 | 1.511 (3) |
N2—C3 | 1.490 (2) | C15—C17 | 1.517 (3) |
N2—H3N | 0.8900 | C15—H15 | 0.9800 |
N2—H2N | 0.8900 | C8—C7 | 1.380 (3) |
C11—N4 | 1.347 (2) | C8—C9 | 1.384 (3) |
N1—C5 | 1.421 (2) | C8—H8 | 0.9300 |
N1—C2 | 1.460 (2) | C1—H1A | 0.9700 |
N1—C1 | 1.472 (2) | C1—H1B | 0.9700 |
C2—C3 | 1.513 (2) | C7—H7 | 0.9300 |
C2—H2A | 0.9700 | C9—H9 | 0.9300 |
C2—H2B | 0.9700 | C16—H16A | 0.9600 |
C4—C1 | 1.512 (3) | C16—H16B | 0.9600 |
C4—H4A | 0.9700 | C16—H16C | 0.9600 |
C4—H4B | 0.9700 | C17—H17A | 0.9600 |
C14—N4 | 1.346 (2) | C17—H17B | 0.9600 |
C14—C13 | 1.366 (3) | C17—H17C | 0.9600 |
C12—C13 | 1.442 (3) | ||
C11—N3—C12 | 125.17 (16) | C12—C13—C15 | 117.51 (16) |
C11—N3—H3 | 117.4 | N2—C3—C2 | 109.92 (15) |
C12—N3—H3 | 117.4 | N2—C3—H3A | 109.7 |
N4—N4—C14 | 0 (10) | C2—C3—H3A | 109.7 |
N4—N4—C11 | 0 (10) | N2—C3—H3B | 109.7 |
C14—N4—C11 | 117.31 (15) | C2—C3—H3B | 109.7 |
C4—N2—C3 | 111.77 (14) | H3A—C3—H3B | 108.2 |
C4—N2—H3N | 109.3 | C9—C10—C5 | 120.54 (18) |
C3—N2—H3N | 109.3 | C9—C10—H10 | 119.7 |
C4—N2—H2N | 109.3 | C5—C10—H10 | 119.7 |
C3—N2—H2N | 109.3 | C16—C15—C17 | 113.20 (18) |
H3N—N2—H2N | 107.9 | C16—C15—C13 | 114.57 (16) |
O1—C11—N4 | 121.67 (16) | C17—C15—C13 | 112.72 (16) |
O1—C11—N4 | 121.67 (16) | C16—C15—H15 | 105.1 |
N4—C11—N4 | 0.00 (14) | C17—C15—H15 | 105.1 |
O1—C11—N3 | 120.23 (17) | C13—C15—H15 | 105.1 |
N4—C11—N3 | 118.10 (16) | C10—C5—C6 | 118.26 (17) |
N4—C11—N3 | 118.10 (16) | C10—C5—N1 | 119.06 (16) |
C5—N1—C2 | 116.59 (14) | C6—C5—N1 | 122.64 (17) |
C5—N1—C1 | 114.83 (15) | C7—C8—C9 | 119.04 (19) |
C2—N1—C1 | 110.50 (14) | C7—C8—H8 | 120.5 |
N1—C2—C3 | 109.78 (14) | C9—C8—H8 | 120.5 |
N1—C2—H2A | 109.7 | N1—C1—C4 | 110.37 (15) |
C3—C2—H2A | 109.7 | N1—C1—H1A | 109.6 |
N1—C2—H2B | 109.7 | C4—C1—H1A | 109.6 |
C3—C2—H2B | 109.7 | N1—C1—H1B | 109.6 |
H2A—C2—H2B | 108.2 | C4—C1—H1B | 109.6 |
N2—C4—C1 | 110.25 (15) | H1A—C1—H1B | 108.1 |
N2—C4—H4A | 109.6 | C8—C7—C6 | 120.75 (19) |
C1—C4—H4A | 109.6 | C8—C7—H7 | 119.6 |
N2—C4—H4B | 109.6 | C6—C7—H7 | 119.6 |
C1—C4—H4B | 109.6 | C10—C9—C8 | 120.9 (2) |
H4A—C4—H4B | 108.1 | C10—C9—H9 | 119.5 |
N4—C14—N4 | 0.00 (17) | C8—C9—H9 | 119.5 |
N4—C14—C13 | 128.81 (17) | C15—C16—H16A | 109.5 |
N4—C14—C13 | 128.81 (17) | C15—C16—H16B | 109.5 |
N4—C14—Cl1 | 111.18 (13) | H16A—C16—H16B | 109.5 |
N4—C14—Cl1 | 111.18 (13) | C15—C16—H16C | 109.5 |
C13—C14—Cl1 | 120.01 (14) | H16A—C16—H16C | 109.5 |
O2—C12—N3 | 119.11 (17) | H16B—C16—H16C | 109.5 |
O2—C12—C13 | 124.56 (17) | C15—C17—H17A | 109.5 |
N3—C12—C13 | 116.32 (16) | C15—C17—H17B | 109.5 |
C7—C6—C5 | 120.48 (19) | H17A—C17—H17B | 109.5 |
C7—C6—H6 | 119.8 | C15—C17—H17C | 109.5 |
C5—C6—H6 | 119.8 | H17A—C17—H17C | 109.5 |
C14—C13—C12 | 114.11 (16) | H17B—C17—H17C | 109.5 |
C14—C13—C15 | 128.36 (17) | ||
N4—N4—C11—O1 | 0.0 (5) | N3—C12—C13—C14 | 4.0 (2) |
C14—N4—C11—O1 | −176.64 (16) | O2—C12—C13—C15 | 4.8 (3) |
C14—N4—C11—N4 | 0 (100) | N3—C12—C13—C15 | −174.41 (15) |
N4—N4—C11—N3 | 0.0 (4) | C4—N2—C3—C2 | 55.49 (19) |
C14—N4—C11—N3 | 2.5 (2) | N1—C2—C3—N2 | −58.11 (19) |
C12—N3—C11—O1 | 179.96 (16) | C14—C13—C15—C16 | 65.7 (3) |
C12—N3—C11—N4 | 0.8 (3) | C12—C13—C15—C16 | −116.20 (19) |
C12—N3—C11—N4 | 0.8 (3) | C14—C13—C15—C17 | −65.7 (3) |
C5—N1—C2—C3 | −165.61 (15) | C12—C13—C15—C17 | 112.4 (2) |
C1—N1—C2—C3 | 60.88 (19) | C9—C10—C5—C6 | 1.1 (3) |
C3—N2—C4—C1 | −54.5 (2) | C9—C10—C5—N1 | −176.58 (17) |
C11—N4—C14—N4 | 0 (100) | C7—C6—C5—C10 | −1.1 (3) |
N4—N4—C14—C13 | 0.0 (3) | C7—C6—C5—N1 | 176.42 (17) |
C11—N4—C14—C13 | −2.5 (3) | C2—N1—C5—C10 | 164.11 (16) |
N4—N4—C14—Cl1 | 0.0 (3) | C1—N1—C5—C10 | −64.4 (2) |
C11—N4—C14—Cl1 | 177.09 (13) | C2—N1—C5—C6 | −13.4 (2) |
C11—N3—C12—O2 | 176.56 (16) | C1—N1—C5—C6 | 118.11 (19) |
C11—N3—C12—C13 | −4.2 (3) | C5—N1—C1—C4 | 165.63 (15) |
N4—C14—C13—C12 | −0.9 (3) | C2—N1—C1—C4 | −59.98 (19) |
N4—C14—C13—C12 | −0.9 (3) | N2—C4—C1—N1 | 56.0 (2) |
Cl1—C14—C13—C12 | 179.55 (12) | C9—C8—C7—C6 | 0.4 (3) |
N4—C14—C13—C15 | 177.27 (17) | C5—C6—C7—C8 | 0.4 (3) |
N4—C14—C13—C15 | 177.27 (17) | C5—C10—C9—C8 | −0.3 (3) |
Cl1—C14—C13—C15 | −2.3 (3) | C7—C8—C9—C10 | −0.5 (3) |
O2—C12—C13—C14 | −176.82 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···N4 | 0.89 | 1.93 | 2.813 (2) | 174 |
N2—H3N···O1i | 0.89 | 1.84 | 2.705 (2) | 164 |
N3—H3···O2ii | 0.86 | 1.98 | 2.834 (2) | 174 |
C3—H3A···O2iii | 0.97 | 2.54 | 3.394 (2) | 147 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+1/2, −y+5/2, −z+1/2; (iii) x+1/2, −y+2, z. |
Acknowledgements
The authors are grateful to the Deanship of Scientific Research at King Saud University for funding this study through the research group project No. PRG-1436-23. We also acknowledge financial support from the Spanish Ministerio de Economía y Competitividad (MINECO-13-MAT2013-40950-R, FPI grant BES-2011-046948 to MSMA).
References
Agilent (2014). CrysAlis PRO. Agilent Technologies UK Ltd, Yarnton, England. Google Scholar
Al-Omary, F. A. M., Ghabbour, H. A., El-Emam, A. A., Chidan Kumar, C. S. & Fun, H.-K. (2014). Acta Cryst. E70, o245–o246. CSD CrossRef IUCr Journals Google Scholar
Al-Turkistani, A. A., Al-Deeb, O. A., El-Brollosy, N. R. & El-Emam, A. A. (2011). Molecules, 16, 4764–4774. Web of Science CAS PubMed Google Scholar
Arnatt, C. K., Adams, J. L., Zhang, Z., Haney, K. M., Li, G. & Zhang, Y. (2014). Bioorg. Med. Chem. Lett. 24, 2319–2323. CrossRef CAS PubMed Google Scholar
Bali, A., Sharma, K., Bhalla, A., Bala, S., Reddy, D., Singh, A. & Kumar, A. (2010). Eur. J. Med. Chem. 45, 2656–2662. CrossRef CAS PubMed Google Scholar
Bender, A. M., Clark, M. J., Agius, M. P., Traynor, J. R. & Mosberg, H. I. (2014). Bioorg. Med. Chem. Lett. 24, 548–551. CrossRef CAS PubMed Google Scholar
Blokhina, N. G., Vozny, E. K. & Garin, A. M. (1972). Cancer, 30, 390–392. CrossRef CAS PubMed Google Scholar
Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., Giacovazzo, C., Mallamo, M., Mazzone, A., Polidori, G. & Spagna, R. (2012). J. Appl. Cryst. 45, 357–361. Web of Science CrossRef CAS IUCr Journals Google Scholar
El-Emam, A. A., Massoud, M. A., El-Bendary, E. R. & El-Sayed, M. A. (2004). Bull. Korean Chem. Soc. 25, 991–996. CAS Google Scholar
Fytas, C., Zoidis, G., Tsotinis, A., Fytas, G., Khan, M. A., Akhtar, S., Rahman, K. M. & Thurston, D. E. (2015). Eur. J. Med. Chem. 93, 281–290. CrossRef CAS PubMed Google Scholar
Ghoshal, K. & Jacob, S. T. (1997). Biochem. Pharmacol. 53, 1569–1575. CrossRef CAS PubMed Web of Science Google Scholar
Groom, C. R. & Allen, F. H. (2014). Angew. Chem. Int. Ed. 53, 662–671. Web of Science CSD CrossRef CAS Google Scholar
Jang, Y. H., Sowers, L. C., Çağin, T. & Goddard, W. A. III (2001). J. Phys. Chem. A, 105, 274–280. Web of Science CrossRef CAS Google Scholar
Kamal, A., Sreekanth, K., Shankaraiah, N., Sathish, M., Nekkanti, S. & Srinivasulu, V. (2015). Bioorg. Chem. 59, 23–30. CrossRef CAS PubMed Google Scholar
Kapić, S., Paljetak, H. Č., Jakopović, I. P., Fajdetić, A., Ilijaš, M., Štimac, V., Brajša, K., Holmes, D. J., Berge, J. & Alihodžić, S. (2011). Bioorg. Med. Chem. 19, 7281–7298. PubMed Google Scholar
Kurinovich, M. A. & Lee, J. K. (2002). J. Am. Soc. Mass Spectrom. 13, 985–995. Web of Science CrossRef PubMed CAS Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Nagesh, H. N., Suresh, A., Sairam, S. D. S. S., Sriram, D., Yogeeswari, P. & Chandra Sekhar, K. V. G. (2014). Eur. J. Med. Chem. 84, 605–613. CrossRef CAS PubMed Google Scholar
Nguyen, M. T., Chandra, A. K. & Zeegers-Huyskens, T. (1998). J. Chem. Soc. Faraday Trans. 94, 1277–1280. CAS Google Scholar
Peng, C.-T., Gao, C., Wang, N.-Y., You, X.-Y., Zhang, L.-D., Zhu, Y.-X., Xv, Y., Zuo, W.-Q., Ran, K., Deng, H.-X., Lei, Q., Xiao, K.-J. & Yu, L.-T. (2015). Bioorg. Med. Chem. Lett. 25, 1373–1376. CrossRef CAS PubMed Google Scholar
Romero, D. L., Morge, R. A., Biles, C., Berrios-Pena, N., May, P. D., Palmer, J. R., Johnson, P. D., Smith, H. W., Busso, M., Tan, C.-K., Voorman, R. L., Reusser, F., Althaus, I. W., So, A. G., Resnick, L., Tarpley, W. G. & Aristoff, P. A. (1994). J. Med. Chem. 37, 999–1014. CrossRef CAS PubMed Google Scholar
Romero, D. L., Olmsted, R. A., Poel, T. J., Morge, R. A., Biles, C., Keiser, B. J., Kopta, L. A., Friis, J. M., Hosley, J. D., Stefanski, K. J., Wishka, D. G., Evans, D. B., Morris, J., Stehle, R. G., Sharma, S. K., Yagi, Y., Voorman, R. L., Adams, W. J., Tarpley, W. G. & Thomas, R. C. (1996). J. Med. Chem. 39, 3769–3789. CrossRef CAS PubMed Google Scholar
Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Spáčilová, L., Džubák, P., Hajdúch, M., Křupková, S., Hradil, P. & Hlaváč, J. (2007). Bioorg. Med. Chem. Lett. 17, 6647–6650. PubMed Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tanaka, H., Takashima, H., Ubasawa, M., Sekiya, K., Inouye, N., Baba, M., Shigeta, S., Walker, R. T., De Clercq, E. & Miyasaka, T. (1995). J. Med. Chem. 38, 2860–2865. CrossRef CAS PubMed Web of Science Google Scholar
Wang, S.-F., Yin, Y., Qiao, F., Wu, X., Sha, S., Zhang, L. & Zhu, H.-L. (2014). Bioorg. Med. Chem. 22, 2409–2415. CrossRef CAS PubMed Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
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