organic compounds
N-{[2-(pyridin-2-yl)ethyl]carbamothioyl}benzamide
of 2-methyl-aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 Georgetown, Penang, Malaysia
*Correspondence e-mail: farookdr@gmail.com
In the title compound, C16H17N3OS, a benzoyl thiourea derivative, the planes of the pyridine and benzene rings are inclined to one another by 66.54 (9)°. There is an intramolecular N—H⋯O hydrogen bond present forming an S(6) ring motif. In the crystal, molecules are linked via pairs of N—H⋯N hydrogen bonds, forming inversion dimers, which are reinforced by pairs of C—H⋯S hydrogen bonds. The dimers are linked via C—H⋯π interactions, forming ribbons along [010].
Keywords: crystal structure; benzamide; carbonyl thiourea; inversion dimers; hydrogen bonding.
CCDC reference: 1412857
1. Related literature
For the N-{[2-(pyridin-2-yl)ethyl]carbamothioyl}benzamide, see: Adam et al. (2014). For the of N-carbamothioyl-2-methylbenzamide, see: Adam et al. (2015).
of the 4-methyl derivative, 4-methyl-2. Experimental
2.1. Crystal data
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2.3. Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL2014 and PLATON (Spek, 2009).
Supporting information
CCDC reference: 1412857
https://doi.org/10.1107/S2056989015013559/su5173sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989015013559/su5173Isup2.hkl
Ortho Benzoyl chloride (13 mmol) was added drop wise to a stirred acetone solution (30 ml) of ammonium thiocyanate (13 mmol). Stirring was continued for 10 min. A solution of ethyl pyridine in acetone was then added and the reaction mixture was refluxed for 3 h, after which the solution was poured into a beaker containing some ice cubes. The resulting precipitate was collected by titration, washed several times with a cold ethanol/water mixture and purified by recrystallization from an ethanol solution, yielding colourless plate-like crystals.
Crystal data, data collection and structure
details are summarized in Table 2. The NH H-atoms were located in a difference Fourier map and freely refined. The C-bound H atoms were positioned geometrically and refined using a riding model: C—H = 0.93–0.96 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for other H atoms.The title compound, Fig. 1, is a benzoyl thiourea derivative with the pyridine and benzene rings being inclined to one another by 66.54 (9) °. The bond lengths and angles are very similar to those observed for the analogous structure, 4-methyl-N-[2-(pyridin-2-yl)ethylcarbamothioyl]benzamide (Adam et al., 2014). However, in the 4-methyl derivative the pyridine and benzene rings are inclined to one another by 71.33 (15) °. There is an intramolecular N—H···O hydrogen bond present in both molecules forming an S(6) ring motif (for the title compound, see Table 1 and Fig. 1).
In the crystal, molecules are linked via pairs of N—H···N hydrogen bonds forming inversion dimers which are reinforced by pairs of C—H···S hydrogen bonds (Fig. 2 and Table 1). The dimers are linked via C—H···π interactions forming ribbons along [010]; Table 1 and Fig. 2.
The title compound, Fig. 1, is a benzoyl thiourea derivative with the pyridine and benzene rings being inclined to one another by 66.54 (9) °. The bond lengths and angles are very similar to those observed for the analogous structure, 4-methyl-N-[2-(pyridin-2-yl)ethylcarbamothioyl]benzamide (Adam et al., 2014). However, in the 4-methyl derivative the pyridine and benzene rings are inclined to one another by 71.33 (15) °. There is an intramolecular N—H···O hydrogen bond present in both molecules forming an S(6) ring motif (for the title compound, see Table 1 and Fig. 1).
In the crystal, molecules are linked via pairs of N—H···N hydrogen bonds forming inversion dimers which are reinforced by pairs of C—H···S hydrogen bonds (Fig. 2 and Table 1). The dimers are linked via C—H···π interactions forming ribbons along [010]; Table 1 and Fig. 2.
For the
of the 4-methyl derivative, 4-methyl-N-{[2-(pyridin-2-yl)ethyl]carbamothioyl}benzamide, see: Adam et al. (2014). For the of N-carbamothioyl-2-methylbenzamide, see: Adam et al. (2015).Ortho Benzoyl chloride (13 mmol) was added drop wise to a stirred acetone solution (30 ml) of ammonium thiocyanate (13 mmol). Stirring was continued for 10 min. A solution of ethyl pyridine in acetone was then added and the reaction mixture was refluxed for 3 h, after which the solution was poured into a beaker containing some ice cubes. The resulting precipitate was collected by titration, washed several times with a cold ethanol/water mixture and purified by recrystallization from an ethanol solution, yielding colourless plate-like crystals.
detailsCrystal data, data collection and structure
details are summarized in Table 2. The NH H-atoms were located in a difference Fourier map and freely refined. The C-bound H atoms were positioned geometrically and refined using a riding model: C—H = 0.93–0.96 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for other H atoms.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The intramolecular N-H···O hydrogen bond is shown as a dashed line (see Table 1 for details). | |
Fig. 2. A view along the a axis of the crystal packing of the title compound. The hydrogen bonds and C-H···π interactions (H atom a grey ball) are shown as dashed lines (see Table 1 for details). |
C16H17N3OS | Z = 2 |
Mr = 299.38 | F(000) = 316 |
Triclinic, P1 | Dx = 1.262 Mg m−3 |
a = 8.5434 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.7477 (4) Å | Cell parameters from 8347 reflections |
c = 11.0530 (5) Å | θ = 2.4–28.3° |
α = 86.1868 (13)° | µ = 0.21 mm−1 |
β = 83.3739 (13)° | T = 100 K |
γ = 73.8746 (13)° | Plate, colourless |
V = 787.73 (6) Å3 | 0.53 × 0.42 × 0.22 mm |
Bruker APEX DUO CCD area-detector diffractometer | 4698 independent reflections |
Radiation source: fine-focus sealed tube | 3412 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
φ and ω scans | θmax = 30.3°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→12 |
Tmin = 0.670, Tmax = 0.867 | k = −12→12 |
30520 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: mixed |
wR(F2) = 0.129 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0515P)2 + 0.2342P] where P = (Fo2 + 2Fc2)/3 |
4698 reflections | (Δ/σ)max < 0.001 |
199 parameters | Δρmax = 0.37 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C16H17N3OS | γ = 73.8746 (13)° |
Mr = 299.38 | V = 787.73 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.5434 (4) Å | Mo Kα radiation |
b = 8.7477 (4) Å | µ = 0.21 mm−1 |
c = 11.0530 (5) Å | T = 100 K |
α = 86.1868 (13)° | 0.53 × 0.42 × 0.22 mm |
β = 83.3739 (13)° |
Bruker APEX DUO CCD area-detector diffractometer | 4698 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3412 reflections with I > 2σ(I) |
Tmin = 0.670, Tmax = 0.867 | Rint = 0.045 |
30520 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.129 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.37 e Å−3 |
4698 reflections | Δρmin = −0.22 e Å−3 |
199 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.29858 (5) | 1.05179 (5) | −0.14484 (4) | 0.05473 (14) | |
O1 | 0.46415 (15) | 0.62159 (12) | 0.10945 (10) | 0.0552 (3) | |
N1 | 0.32417 (14) | 0.87622 (13) | 0.05803 (10) | 0.0367 (2) | |
N2 | 0.47718 (15) | 0.75403 (15) | −0.11337 (11) | 0.0408 (3) | |
N3 | 0.87338 (16) | 0.81820 (15) | −0.15598 (13) | 0.0499 (3) | |
C1 | 0.3515 (2) | 0.72438 (18) | 0.36636 (14) | 0.0482 (3) | |
C2 | 0.2522 (3) | 0.7379 (2) | 0.47681 (15) | 0.0654 (5) | |
H2A | 0.3012 | 0.7083 | 0.5488 | 0.079* | |
C3 | 0.0847 (3) | 0.7934 (3) | 0.48282 (18) | 0.0731 (6) | |
H3A | 0.0226 | 0.7999 | 0.5581 | 0.088* | |
C4 | 0.0088 (2) | 0.8393 (2) | 0.37890 (18) | 0.0638 (5) | |
H4A | −0.1046 | 0.8769 | 0.3828 | 0.077* | |
C5 | 0.10295 (19) | 0.82906 (18) | 0.26820 (15) | 0.0478 (3) | |
H5A | 0.0522 | 0.8619 | 0.1972 | 0.057* | |
C6 | 0.27224 (18) | 0.77065 (15) | 0.26075 (12) | 0.0392 (3) | |
C7 | 0.36489 (17) | 0.74777 (16) | 0.13728 (12) | 0.0384 (3) | |
C8 | 0.37507 (16) | 0.88350 (16) | −0.06595 (12) | 0.0359 (3) | |
C9 | 0.5275 (2) | 0.73791 (19) | −0.24280 (13) | 0.0462 (3) | |
H9A | 0.4348 | 0.7906 | −0.2875 | 0.055* | |
H9B | 0.5589 | 0.6259 | −0.2610 | 0.055* | |
C10 | 0.6698 (2) | 0.80764 (19) | −0.28709 (14) | 0.0487 (3) | |
H10A | 0.6926 | 0.7974 | −0.3746 | 0.058* | |
H10B | 0.6371 | 0.9203 | −0.2709 | 0.058* | |
C11 | 0.82339 (18) | 0.73009 (17) | −0.22889 (14) | 0.0445 (3) | |
C12 | 0.9112 (2) | 0.5738 (2) | −0.2508 (2) | 0.0661 (5) | |
H12A | 0.8745 | 0.5138 | −0.3019 | 0.079* | |
C13 | 1.0517 (3) | 0.5084 (2) | −0.1970 (3) | 0.0805 (7) | |
H13A | 1.1105 | 0.4032 | −0.2102 | 0.097* | |
C14 | 1.1056 (2) | 0.5992 (3) | −0.1232 (2) | 0.0779 (6) | |
H14A | 1.2021 | 0.5582 | −0.0867 | 0.093* | |
C15 | 1.0123 (2) | 0.7523 (2) | −0.1053 (2) | 0.0676 (5) | |
H15A | 1.0477 | 0.8142 | −0.0549 | 0.081* | |
C16 | 0.5335 (2) | 0.6686 (3) | 0.36477 (18) | 0.0661 (5) | |
H16A | 0.5808 | 0.7494 | 0.3264 | 0.099* | |
H16B | 0.5743 | 0.5728 | 0.3200 | 0.099* | |
H16C | 0.5624 | 0.6477 | 0.4468 | 0.099* | |
H1N2 | 0.508 (2) | 0.676 (2) | −0.0647 (16) | 0.049 (5)* | |
H1N1 | 0.265 (2) | 0.967 (2) | 0.0876 (16) | 0.049 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0565 (2) | 0.0474 (2) | 0.0519 (2) | −0.00366 (17) | −0.00764 (18) | 0.01618 (17) |
O1 | 0.0692 (7) | 0.0369 (5) | 0.0446 (6) | 0.0061 (5) | 0.0018 (5) | 0.0038 (4) |
N1 | 0.0395 (6) | 0.0309 (5) | 0.0360 (6) | −0.0043 (4) | −0.0032 (4) | 0.0010 (4) |
N2 | 0.0463 (6) | 0.0384 (6) | 0.0355 (6) | −0.0096 (5) | −0.0016 (5) | 0.0026 (5) |
N3 | 0.0483 (7) | 0.0395 (6) | 0.0586 (8) | −0.0079 (5) | −0.0005 (6) | −0.0052 (6) |
C1 | 0.0641 (9) | 0.0415 (7) | 0.0405 (7) | −0.0166 (7) | −0.0103 (7) | 0.0054 (6) |
C2 | 0.0994 (15) | 0.0627 (11) | 0.0355 (8) | −0.0253 (10) | −0.0080 (9) | 0.0049 (7) |
C3 | 0.0886 (15) | 0.0695 (12) | 0.0523 (10) | −0.0179 (11) | 0.0201 (10) | −0.0027 (9) |
C4 | 0.0601 (10) | 0.0592 (10) | 0.0635 (11) | −0.0100 (8) | 0.0140 (9) | −0.0032 (8) |
C5 | 0.0506 (8) | 0.0436 (8) | 0.0458 (8) | −0.0086 (6) | −0.0015 (6) | −0.0008 (6) |
C6 | 0.0499 (8) | 0.0310 (6) | 0.0357 (7) | −0.0099 (5) | −0.0038 (6) | 0.0006 (5) |
C7 | 0.0430 (7) | 0.0331 (6) | 0.0368 (7) | −0.0067 (5) | −0.0054 (5) | 0.0006 (5) |
C8 | 0.0345 (6) | 0.0375 (6) | 0.0369 (6) | −0.0111 (5) | −0.0072 (5) | 0.0028 (5) |
C9 | 0.0559 (9) | 0.0488 (8) | 0.0360 (7) | −0.0176 (7) | −0.0025 (6) | −0.0056 (6) |
C10 | 0.0598 (9) | 0.0483 (8) | 0.0374 (7) | −0.0171 (7) | 0.0017 (6) | 0.0012 (6) |
C11 | 0.0474 (8) | 0.0380 (7) | 0.0449 (8) | −0.0131 (6) | 0.0112 (6) | −0.0009 (6) |
C12 | 0.0633 (11) | 0.0428 (9) | 0.0883 (14) | −0.0116 (8) | 0.0089 (10) | −0.0158 (9) |
C13 | 0.0581 (11) | 0.0424 (9) | 0.128 (2) | 0.0000 (8) | 0.0105 (12) | −0.0077 (11) |
C14 | 0.0437 (9) | 0.0661 (12) | 0.1145 (18) | −0.0032 (9) | −0.0051 (10) | 0.0084 (12) |
C15 | 0.0534 (10) | 0.0612 (11) | 0.0871 (14) | −0.0109 (8) | −0.0126 (9) | −0.0062 (10) |
C16 | 0.0702 (12) | 0.0708 (12) | 0.0607 (11) | −0.0217 (9) | −0.0261 (9) | 0.0174 (9) |
S1—C8 | 1.6675 (13) | C5—H5A | 0.9300 |
O1—C7 | 1.2236 (16) | C6—C7 | 1.4926 (19) |
N1—C7 | 1.3686 (17) | C9—C10 | 1.525 (2) |
N1—C8 | 1.3919 (17) | C9—H9A | 0.9700 |
N1—H1N1 | 0.874 (18) | C9—H9B | 0.9700 |
N2—C8 | 1.3203 (18) | C10—C11 | 1.496 (2) |
N2—C9 | 1.4499 (18) | C10—H10A | 0.9700 |
N2—H1N2 | 0.841 (19) | C10—H10B | 0.9700 |
N3—C11 | 1.331 (2) | C11—C12 | 1.387 (2) |
N3—C15 | 1.336 (2) | C12—C13 | 1.364 (3) |
C1—C2 | 1.396 (2) | C12—H12A | 0.9300 |
C1—C6 | 1.397 (2) | C13—C14 | 1.372 (3) |
C1—C16 | 1.494 (3) | C13—H13A | 0.9300 |
C2—C3 | 1.372 (3) | C14—C15 | 1.369 (3) |
C2—H2A | 0.9300 | C14—H14A | 0.9300 |
C3—C4 | 1.366 (3) | C15—H15A | 0.9300 |
C3—H3A | 0.9300 | C16—H16A | 0.9600 |
C4—C5 | 1.378 (2) | C16—H16B | 0.9600 |
C4—H4A | 0.9300 | C16—H16C | 0.9600 |
C5—C6 | 1.388 (2) | ||
C7—N1—C8 | 127.33 (12) | N2—C9—H9A | 108.9 |
C7—N1—H1N1 | 118.0 (12) | C10—C9—H9A | 108.9 |
C8—N1—H1N1 | 114.5 (12) | N2—C9—H9B | 108.9 |
C8—N2—C9 | 123.54 (13) | C10—C9—H9B | 108.9 |
C8—N2—H1N2 | 116.3 (12) | H9A—C9—H9B | 107.7 |
C9—N2—H1N2 | 120.0 (12) | C11—C10—C9 | 113.91 (13) |
C11—N3—C15 | 118.03 (15) | C11—C10—H10A | 108.8 |
C2—C1—C6 | 116.77 (16) | C9—C10—H10A | 108.8 |
C2—C1—C16 | 120.27 (16) | C11—C10—H10B | 108.8 |
C6—C1—C16 | 122.91 (15) | C9—C10—H10B | 108.8 |
C3—C2—C1 | 122.25 (17) | H10A—C10—H10B | 107.7 |
C3—C2—H2A | 118.9 | N3—C11—C12 | 121.26 (16) |
C1—C2—H2A | 118.9 | N3—C11—C10 | 117.10 (13) |
C4—C3—C2 | 120.40 (17) | C12—C11—C10 | 121.64 (16) |
C4—C3—H3A | 119.8 | C13—C12—C11 | 119.68 (19) |
C2—C3—H3A | 119.8 | C13—C12—H12A | 120.2 |
C3—C4—C5 | 118.99 (18) | C11—C12—H12A | 120.2 |
C3—C4—H4A | 120.5 | C12—C13—C14 | 119.45 (18) |
C5—C4—H4A | 120.5 | C12—C13—H13A | 120.3 |
C4—C5—C6 | 121.16 (16) | C14—C13—H13A | 120.3 |
C4—C5—H5A | 119.4 | C15—C14—C13 | 117.6 (2) |
C6—C5—H5A | 119.4 | C15—C14—H14A | 121.2 |
C5—C6—C1 | 120.41 (14) | C13—C14—H14A | 121.2 |
C5—C6—C7 | 118.19 (13) | N3—C15—C14 | 123.9 (2) |
C1—C6—C7 | 121.25 (13) | N3—C15—H15A | 118.0 |
O1—C7—N1 | 123.59 (13) | C14—C15—H15A | 118.0 |
O1—C7—C6 | 121.89 (12) | C1—C16—H16A | 109.5 |
N1—C7—C6 | 114.47 (11) | C1—C16—H16B | 109.5 |
N2—C8—N1 | 117.23 (12) | H16A—C16—H16B | 109.5 |
N2—C8—S1 | 124.66 (11) | C1—C16—H16C | 109.5 |
N1—C8—S1 | 118.08 (10) | H16A—C16—H16C | 109.5 |
N2—C9—C10 | 113.56 (12) | H16B—C16—H16C | 109.5 |
C6—C1—C2—C3 | 0.1 (3) | C9—N2—C8—N1 | 173.37 (12) |
C16—C1—C2—C3 | 177.89 (19) | C9—N2—C8—S1 | −4.5 (2) |
C1—C2—C3—C4 | −0.6 (3) | C7—N1—C8—N2 | −1.7 (2) |
C2—C3—C4—C5 | 0.0 (3) | C7—N1—C8—S1 | 176.26 (11) |
C3—C4—C5—C6 | 1.1 (3) | C8—N2—C9—C10 | 84.03 (18) |
C4—C5—C6—C1 | −1.6 (2) | N2—C9—C10—C11 | 61.39 (18) |
C4—C5—C6—C7 | 174.02 (15) | C15—N3—C11—C12 | 0.8 (2) |
C2—C1—C6—C5 | 0.9 (2) | C15—N3—C11—C10 | −178.50 (15) |
C16—C1—C6—C5 | −176.76 (16) | C9—C10—C11—N3 | −113.16 (15) |
C2—C1—C6—C7 | −174.53 (14) | C9—C10—C11—C12 | 67.54 (19) |
C16—C1—C6—C7 | 7.8 (2) | N3—C11—C12—C13 | −0.1 (3) |
C8—N1—C7—O1 | 5.5 (2) | C10—C11—C12—C13 | 179.20 (17) |
C8—N1—C7—C6 | −171.85 (12) | C11—C12—C13—C14 | −1.0 (3) |
C5—C6—C7—O1 | −128.16 (16) | C12—C13—C14—C15 | 1.2 (3) |
C1—C6—C7—O1 | 47.4 (2) | C11—N3—C15—C14 | −0.5 (3) |
C5—C6—C7—N1 | 49.22 (18) | C13—C14—C15—N3 | −0.5 (4) |
C1—C6—C7—N1 | −135.22 (14) |
Cg2 is the centroid of the C1–C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O1 | 0.842 (17) | 1.971 (18) | 2.6550 (16) | 137.8 (16) |
N1—H1N1···N3i | 0.875 (17) | 2.061 (17) | 2.9366 (17) | 180 (3) |
C16—H16A···S1i | 0.96 | 2.86 | 3.782 (2) | 162 |
C12—H12A···Cg2ii | 0.93 | 2.92 | 3.7724 (19) | 153 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x+1, −y+1, −z. |
Cg2 is the centroid of the C1–C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O1 | 0.842 (17) | 1.971 (18) | 2.6550 (16) | 137.8 (16) |
N1—H1N1···N3i | 0.875 (17) | 2.061 (17) | 2.9366 (17) | 180 (3) |
C16—H16A···S1i | 0.96 | 2.86 | 3.782 (2) | 162 |
C12—H12A···Cg2ii | 0.93 | 2.92 | 3.7724 (19) | 153 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x+1, −y+1, −z. |
Acknowledgements
The authors thank the Universiti Sains Malaysia for research grant Nos. PKIMIA846017 and RU-1001/PKIMIA/811269, which partially supported this work.
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