organic compounds
H-indol-3-yl)nicotinonitrile
of 5-(5-chloro-2-hydroxybenzoyl)-2-(2-methyl-1aDepartment of Physics, Presidency College (Autonomous), Chennai 600 005, India, and bOrganic Chemistry, CSIR–Central Leather Research Institute, Adyar, Chennai 600 020, India
*Correspondence e-mail: aspandian59@gmail.com
In the title compound, C22H14ClN3O2, the indole unit is essentially coplanar, with a maximum deviation of 0.035 Å for the C atom bearing the methyl group. The central pyridine ring is inclined to the indole ring system by 43.7 (1)°. The dihedral angle between the phenyl ring and the indole ring system is 15.7 (2)°, while that between the phenyl ring and the central pyridine ring is 46.3 (1)°. The molecular structure is stabilized by an intramolecular O—H⋯O hydrogen bonding, forming an S(6) ring motif. In the crystal, molecules are linked via pairs of N—H⋯N hydrogen bonds, forming inversion dimers with an R22(16) ring motif. The also features C—H⋯π and π–π interactions [centroid–centroid separation = 3.688 (1) Å].
Keywords: crystal structure; nicotinonitrile; acrylate derivatives; indole unit; N—H⋯N hydrogen bonds; C—H⋯π interactions; π–π interactions.
CCDC reference: 1427861
1. Related literature
For applications of acrylate derivatives, see: Barden (2011); Chai et al. (2006); Nieto et al. (2005); Singh et al. (2000); Andreani et al. (2001); Quetin-Leclercq (1994); Mukhopadhyay et al. (1981). For related crystal structures, see: Penthala et al. (2008). For graph-set analysis, see: Grell et al. (2000).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: APEX2 (Bruker, 2008); cell APEX2 and SAINT (Bruker, 2008); data reduction: SAINT and XPREP (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
CCDC reference: 1427861
https://doi.org/10.1107/S2056989015018058/zp2018sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989015018058/zp2018Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989015018058/zp2018Isup3.cml
A mixture of 6-chlorol-3-formylchromone (1 mmol), cyanoacetylindole (1 mmol) and ammonium acetate (1 mmol) in DMF and a catalytic amount of SnCl2.2H2O (0.020 mol %) was added and refluxed for about 3 hrs. After completition of the reaction, the solvent was removed under reduced pressure and the residue was purified by
on siliga gel (3:97% ethylacetate and petether) to afford pure product. The purified compound was recrystalized from ethanol by using slow evaporation method. The yield of the isolated product was 92%, giving block like crystals suitable for X ray diffraction.All H atoms were fixed geometrically and allowed to ride on their parent C atoms, with C—H distances fixed in the range 0.93–0.97 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for all other H atoms.
In modern times, analogs based on indole are significant players in a diverse array of markets such as dyes, plastics, agriculture, vitamin supplements, over-the-counterdrugs, flavour enhancers and perfumery (Barden, 2011). Indole derivatives exhibit antihepatitis B virus (Chai et al., 2006) and antibacterial (Nieto et al., 2005) activities. Indole derivatives have been found to exhibit antibacterial, antifungal (Singh et al., 2000) and antitumour activities (Andreani et al., 2001). Some of the indole
extracted from plants possess interesting cytotoxic, antitumour or antiparasitic properties (Quetin-Leclercq, 1994; Mukhopadhyay et al., 1981). Against this background, the of the title compound has been determined and the results are presented herein.In the title molecule, the indole unit is essentially co-planar with a maximum deviation of -0.035 Å for the C15 atom. The central pyridine (N1/C8—C12) ring is almost halfway to be orthogonal to the indole ring system (N3/C14—C21), making a dihedral angle of 43.7 (1)°. The carbonyl-bound phenyl ring (C16—C21) forms a dihedral angle of 15.7 (2)° with the plane of the indole ring system. The pyridine ring and the phenyl ring are inclined at an angle of 46.3 (1)°. The cyano bond distance C13≡N2 agrees well with the reported value of 1.141 (4) Å.
The crystal packing (Fig. 2 and Table 1) is stabilized by an intramolecular O—H···O hydrogen bond, forms S(6) ring motif. The molecules are linked into inversion dimers via N—H···N hydrogen bonds resulting in an R22(16) graph-set motif, which are stablized by C—H···π (Table 1) and π-π interactions. The Cg1···Cg2ii seperation is 3.688 (1) Å (Fig.2; Cg1 and Cg2 are centroids of the N3/C14—C16/C21 ring and N1/C8—C12 pyridine ring, repectively; symmetry codes: (ii) 1/2 - x, y - 1/2, 1/2 - z).
For applications of acrylate derivatives, see: Barden (2011); Chai et al. (2006); Nieto et al. (2005); Singh et al. (2000); Andreani et al. (2001); Quetin-Leclercq (1994); Mukhopadhyay et al. (1981). For related crystal structures, see: Penthala et al. (2008). For graph-set analysis, see: Grell et al. (2000).
Data collection: APEX2 (Bruker, 2008); cell
APEX2 and SAINT (Bruker, 2008); data reduction: SAINT and XPREP (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, with the atomic numbering scheme and displacement ellipsoids drawn at 30% probability level. | |
Fig. 2. O—H···O intra and N—H···N intermlecular interactions (dotted lines) in the crystal structure of the title compound. The crystal packing of the molecules is viewed down the b axis. |
C22H14ClN3O2 | F(000) = 800 |
Mr = 387.81 | Dx = 1.373 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 2447 reflections |
a = 16.0673 (15) Å | θ = 1.5–25.9° |
b = 7.4804 (7) Å | µ = 0.23 mm−1 |
c = 17.0159 (15) Å | T = 293 K |
β = 113.452 (3)° | Block, colourless |
V = 1876.2 (3) Å3 | 0.27 × 0.23 × 0.18 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 3638 independent reflections |
Radiation source: fine-focus sealed tube | 2447 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
Detector resolution: 0 pixels mm-1 | θmax = 25.9°, θmin = 1.5° |
ω and φ scan | h = −19→15 |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | k = −7→9 |
Tmin = 0.941, Tmax = 0.960 | l = −20→20 |
7690 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.170 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0793P)2 + 1.1008P] where P = (Fo2 + 2Fc2)/3 |
3638 reflections | (Δ/σ)max < 0.001 |
254 parameters | Δρmax = 0.43 e Å−3 |
0 restraints | Δρmin = −0.36 e Å−3 |
C22H14ClN3O2 | V = 1876.2 (3) Å3 |
Mr = 387.81 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 16.0673 (15) Å | µ = 0.23 mm−1 |
b = 7.4804 (7) Å | T = 293 K |
c = 17.0159 (15) Å | 0.27 × 0.23 × 0.18 mm |
β = 113.452 (3)° |
Bruker Kappa APEXII CCD diffractometer | 3638 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2447 reflections with I > 2σ(I) |
Tmin = 0.941, Tmax = 0.960 | Rint = 0.038 |
7690 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | 0 restraints |
wR(F2) = 0.170 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.43 e Å−3 |
3638 reflections | Δρmin = −0.36 e Å−3 |
254 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.6829 (2) | 1.0448 (4) | 0.2799 (2) | 0.0475 (8) | |
C2 | 0.7315 (2) | 1.0614 (5) | 0.2278 (2) | 0.0599 (9) | |
H2 | 0.7877 | 1.1176 | 0.2487 | 0.072* | |
C3 | 0.6961 (2) | 0.9945 (5) | 0.1459 (2) | 0.0608 (9) | |
H3 | 0.7285 | 1.0055 | 0.1115 | 0.073* | |
C4 | 0.6122 (2) | 0.9108 (5) | 0.11432 (19) | 0.0497 (8) | |
C5 | 0.56120 (19) | 0.9038 (4) | 0.16240 (17) | 0.0416 (7) | |
H5 | 0.5036 | 0.8532 | 0.1393 | 0.050* | |
C6 | 0.59480 (17) | 0.9718 (4) | 0.24590 (17) | 0.0377 (6) | |
C7 | 0.54170 (18) | 0.9672 (4) | 0.29877 (17) | 0.0363 (6) | |
C8 | 0.44084 (17) | 0.9513 (4) | 0.26081 (16) | 0.0327 (6) | |
C9 | 0.39945 (18) | 0.8749 (4) | 0.31059 (17) | 0.0382 (6) | |
H9 | 0.4370 | 0.8306 | 0.3641 | 0.046* | |
C10 | 0.25482 (17) | 0.9246 (3) | 0.21050 (15) | 0.0309 (6) | |
C11 | 0.29038 (17) | 1.0110 (4) | 0.15727 (15) | 0.0328 (6) | |
C12 | 0.38420 (17) | 1.0235 (4) | 0.18271 (16) | 0.0341 (6) | |
H12 | 0.4084 | 1.0794 | 0.1477 | 0.041* | |
C13 | 0.23147 (18) | 1.0979 (4) | 0.07944 (17) | 0.0391 (7) | |
C14 | 0.15806 (17) | 0.9068 (4) | 0.19015 (16) | 0.0331 (6) | |
C15 | 0.09024 (19) | 0.8498 (4) | 0.11465 (17) | 0.0411 (7) | |
C16 | 0.02316 (18) | 0.9066 (4) | 0.20583 (19) | 0.0424 (7) | |
C17 | −0.0377 (2) | 0.9216 (5) | 0.2447 (3) | 0.0577 (9) | |
H17 | −0.0992 | 0.8991 | 0.2146 | 0.069* | |
C18 | −0.0039 (2) | 0.9706 (5) | 0.3289 (3) | 0.0625 (10) | |
H18 | −0.0430 | 0.9798 | 0.3569 | 0.075* | |
C19 | 0.0883 (2) | 1.0074 (4) | 0.3739 (2) | 0.0565 (9) | |
H19 | 0.1091 | 1.0423 | 0.4310 | 0.068* | |
C20 | 0.1487 (2) | 0.9931 (4) | 0.33560 (18) | 0.0428 (7) | |
H20 | 0.2100 | 1.0177 | 0.3662 | 0.051* | |
C21 | 0.11658 (17) | 0.9409 (3) | 0.25004 (17) | 0.0356 (6) | |
C22 | 0.0944 (2) | 0.7734 (5) | 0.03518 (18) | 0.0563 (9) | |
H22A | 0.0340 | 0.7473 | −0.0054 | 0.084* | |
H22B | 0.1296 | 0.6654 | 0.0490 | 0.084* | |
H22C | 0.1221 | 0.8583 | 0.0108 | 0.084* | |
N1 | 0.31060 (14) | 0.8602 (3) | 0.28774 (13) | 0.0373 (6) | |
N2 | 0.18555 (17) | 1.1658 (4) | 0.01731 (16) | 0.0565 (7) | |
N3 | 0.00999 (15) | 0.8531 (3) | 0.12427 (16) | 0.0481 (7) | |
H3A | −0.0417 | 0.8255 | 0.0849 | 0.058* | |
O1 | 0.72328 (15) | 1.1053 (4) | 0.36103 (15) | 0.0673 (7) | |
H1 | 0.6973 | 1.0640 | 0.3898 | 0.101* | |
O2 | 0.58003 (13) | 0.9826 (3) | 0.37762 (12) | 0.0537 (6) | |
Cl1 | 0.57239 (7) | 0.81118 (15) | 0.01424 (5) | 0.0737 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0320 (16) | 0.0497 (19) | 0.0610 (19) | 0.0020 (13) | 0.0186 (14) | −0.0031 (15) |
C2 | 0.0342 (18) | 0.072 (2) | 0.083 (2) | −0.0061 (16) | 0.0330 (17) | −0.0059 (19) |
C3 | 0.047 (2) | 0.073 (2) | 0.078 (2) | 0.0088 (18) | 0.0412 (19) | 0.0046 (19) |
C4 | 0.0410 (18) | 0.061 (2) | 0.0480 (17) | 0.0175 (15) | 0.0186 (14) | 0.0019 (15) |
C5 | 0.0311 (15) | 0.0455 (17) | 0.0471 (16) | 0.0076 (13) | 0.0143 (13) | 0.0030 (13) |
C6 | 0.0244 (14) | 0.0397 (15) | 0.0473 (16) | 0.0027 (12) | 0.0125 (12) | 0.0018 (12) |
C7 | 0.0276 (14) | 0.0419 (16) | 0.0384 (15) | 0.0000 (12) | 0.0121 (12) | 0.0023 (12) |
C8 | 0.0249 (13) | 0.0380 (15) | 0.0340 (13) | 0.0006 (11) | 0.0104 (11) | −0.0015 (11) |
C9 | 0.0284 (14) | 0.0479 (17) | 0.0333 (14) | 0.0022 (12) | 0.0072 (11) | 0.0052 (12) |
C10 | 0.0264 (13) | 0.0334 (14) | 0.0303 (13) | −0.0008 (11) | 0.0084 (11) | −0.0012 (10) |
C11 | 0.0272 (14) | 0.0383 (14) | 0.0295 (13) | 0.0006 (11) | 0.0078 (11) | 0.0003 (11) |
C12 | 0.0287 (14) | 0.0394 (15) | 0.0357 (14) | −0.0006 (11) | 0.0143 (11) | 0.0017 (11) |
C13 | 0.0300 (15) | 0.0510 (17) | 0.0354 (15) | −0.0029 (13) | 0.0119 (12) | 0.0032 (13) |
C14 | 0.0257 (14) | 0.0356 (14) | 0.0356 (14) | −0.0015 (11) | 0.0098 (11) | 0.0032 (11) |
C15 | 0.0326 (16) | 0.0429 (16) | 0.0404 (15) | −0.0040 (12) | 0.0067 (12) | 0.0056 (12) |
C16 | 0.0290 (15) | 0.0383 (16) | 0.0590 (18) | 0.0020 (12) | 0.0164 (13) | 0.0113 (13) |
C17 | 0.0327 (17) | 0.054 (2) | 0.091 (3) | 0.0040 (14) | 0.0296 (18) | 0.0153 (18) |
C18 | 0.057 (2) | 0.057 (2) | 0.096 (3) | 0.0111 (17) | 0.053 (2) | 0.0110 (19) |
C19 | 0.067 (2) | 0.0496 (19) | 0.066 (2) | 0.0045 (17) | 0.0405 (18) | 0.0023 (16) |
C20 | 0.0400 (17) | 0.0411 (16) | 0.0504 (17) | −0.0008 (13) | 0.0213 (14) | 0.0007 (13) |
C21 | 0.0255 (13) | 0.0325 (14) | 0.0478 (16) | 0.0006 (11) | 0.0134 (12) | 0.0066 (12) |
C22 | 0.058 (2) | 0.058 (2) | 0.0391 (16) | −0.0120 (16) | 0.0050 (15) | −0.0068 (14) |
N1 | 0.0286 (12) | 0.0456 (14) | 0.0353 (12) | −0.0018 (10) | 0.0102 (10) | 0.0055 (10) |
N2 | 0.0393 (15) | 0.074 (2) | 0.0440 (15) | −0.0056 (13) | 0.0042 (12) | 0.0157 (14) |
N3 | 0.0230 (13) | 0.0574 (16) | 0.0514 (15) | −0.0069 (11) | 0.0018 (11) | 0.0063 (12) |
O1 | 0.0365 (13) | 0.0949 (19) | 0.0668 (15) | −0.0177 (12) | 0.0167 (11) | −0.0186 (14) |
O2 | 0.0325 (11) | 0.0819 (16) | 0.0400 (11) | −0.0051 (10) | 0.0074 (9) | 0.0039 (11) |
Cl1 | 0.0757 (7) | 0.0959 (8) | 0.0522 (5) | 0.0250 (5) | 0.0283 (5) | −0.0047 (5) |
C1—O1 | 1.349 (4) | C12—H12 | 0.9300 |
C1—C2 | 1.399 (4) | C13—N2 | 1.140 (3) |
C1—C6 | 1.409 (4) | C14—C15 | 1.380 (4) |
C2—C3 | 1.373 (5) | C14—C21 | 1.445 (4) |
C2—H2 | 0.9300 | C15—N3 | 1.363 (4) |
C3—C4 | 1.386 (5) | C15—C22 | 1.494 (4) |
C3—H3 | 0.9300 | C16—N3 | 1.377 (4) |
C4—C5 | 1.370 (4) | C16—C17 | 1.386 (4) |
C4—Cl1 | 1.731 (3) | C16—C21 | 1.409 (4) |
C5—C6 | 1.399 (4) | C17—C18 | 1.365 (5) |
C5—H5 | 0.9300 | C17—H17 | 0.9300 |
C6—C7 | 1.466 (4) | C18—C19 | 1.398 (5) |
C7—O2 | 1.239 (3) | C18—H18 | 0.9300 |
C7—C8 | 1.491 (4) | C19—C20 | 1.372 (4) |
C8—C12 | 1.387 (4) | C19—H19 | 0.9300 |
C8—C9 | 1.391 (4) | C20—C21 | 1.393 (4) |
C9—N1 | 1.327 (3) | C20—H20 | 0.9300 |
C9—H9 | 0.9300 | C22—H22A | 0.9600 |
C10—N1 | 1.351 (3) | C22—H22B | 0.9600 |
C10—C11 | 1.405 (4) | C22—H22C | 0.9600 |
C10—C14 | 1.458 (3) | N3—H3A | 0.8600 |
C11—C12 | 1.396 (3) | O1—H1 | 0.8200 |
C11—C13 | 1.441 (4) | ||
O1—C1—C2 | 117.2 (3) | N2—C13—C11 | 179.1 (3) |
O1—C1—C6 | 123.0 (3) | C15—C14—C21 | 107.2 (2) |
C2—C1—C6 | 119.8 (3) | C15—C14—C10 | 128.4 (2) |
C3—C2—C1 | 120.0 (3) | C21—C14—C10 | 124.3 (2) |
C3—C2—H2 | 120.0 | N3—C15—C14 | 108.5 (3) |
C1—C2—H2 | 120.0 | N3—C15—C22 | 120.0 (3) |
C2—C3—C4 | 120.3 (3) | C14—C15—C22 | 131.1 (3) |
C2—C3—H3 | 119.9 | N3—C16—C17 | 130.5 (3) |
C4—C3—H3 | 119.9 | N3—C16—C21 | 107.1 (2) |
C5—C4—C3 | 120.4 (3) | C17—C16—C21 | 122.3 (3) |
C5—C4—Cl1 | 119.8 (3) | C18—C17—C16 | 117.4 (3) |
C3—C4—Cl1 | 119.8 (2) | C18—C17—H17 | 121.3 |
C4—C5—C6 | 120.8 (3) | C16—C17—H17 | 121.3 |
C4—C5—H5 | 119.6 | C17—C18—C19 | 121.3 (3) |
C6—C5—H5 | 119.6 | C17—C18—H18 | 119.3 |
C5—C6—C1 | 118.4 (3) | C19—C18—H18 | 119.3 |
C5—C6—C7 | 122.1 (2) | C20—C19—C18 | 121.4 (3) |
C1—C6—C7 | 119.5 (3) | C20—C19—H19 | 119.3 |
O2—C7—C6 | 120.2 (2) | C18—C19—H19 | 119.3 |
O2—C7—C8 | 117.5 (2) | C19—C20—C21 | 118.7 (3) |
C6—C7—C8 | 122.2 (2) | C19—C20—H20 | 120.6 |
C12—C8—C9 | 116.9 (2) | C21—C20—H20 | 120.6 |
C12—C8—C7 | 124.7 (2) | C20—C21—C16 | 118.8 (3) |
C9—C8—C7 | 118.0 (2) | C20—C21—C14 | 134.7 (2) |
N1—C9—C8 | 125.1 (2) | C16—C21—C14 | 106.5 (2) |
N1—C9—H9 | 117.4 | C15—C22—H22A | 109.5 |
C8—C9—H9 | 117.4 | C15—C22—H22B | 109.5 |
N1—C10—C11 | 120.6 (2) | H22A—C22—H22B | 109.5 |
N1—C10—C14 | 115.5 (2) | C15—C22—H22C | 109.5 |
C11—C10—C14 | 123.9 (2) | H22A—C22—H22C | 109.5 |
C12—C11—C10 | 119.8 (2) | H22B—C22—H22C | 109.5 |
C12—C11—C13 | 119.2 (2) | C9—N1—C10 | 118.4 (2) |
C10—C11—C13 | 120.9 (2) | C15—N3—C16 | 110.7 (2) |
C8—C12—C11 | 119.1 (2) | C15—N3—H3A | 124.7 |
C8—C12—H12 | 120.4 | C16—N3—H3A | 124.7 |
C11—C12—H12 | 120.4 | C1—O1—H1 | 109.5 |
O1—C1—C2—C3 | 176.8 (3) | C10—C11—C13—N2 | −138 (22) |
C6—C1—C2—C3 | −4.8 (5) | N1—C10—C14—C15 | −135.0 (3) |
C1—C2—C3—C4 | 0.1 (5) | C11—C10—C14—C15 | 48.5 (4) |
C2—C3—C4—C5 | 4.1 (5) | N1—C10—C14—C21 | 42.3 (3) |
C2—C3—C4—Cl1 | −174.8 (3) | C11—C10—C14—C21 | −134.3 (3) |
C3—C4—C5—C6 | −3.6 (5) | C21—C14—C15—N3 | 2.0 (3) |
Cl1—C4—C5—C6 | 175.3 (2) | C10—C14—C15—N3 | 179.6 (2) |
C4—C5—C6—C1 | −1.1 (4) | C21—C14—C15—C22 | −170.9 (3) |
C4—C5—C6—C7 | 179.7 (3) | C10—C14—C15—C22 | 6.7 (5) |
O1—C1—C6—C5 | −176.5 (3) | N3—C16—C17—C18 | 176.8 (3) |
C2—C1—C6—C5 | 5.3 (4) | C21—C16—C17—C18 | −0.3 (4) |
O1—C1—C6—C7 | 2.8 (5) | C16—C17—C18—C19 | 1.1 (5) |
C2—C1—C6—C7 | −175.4 (3) | C17—C18—C19—C20 | −1.0 (5) |
C5—C6—C7—O2 | 160.6 (3) | C18—C19—C20—C21 | 0.1 (4) |
C1—C6—C7—O2 | −18.6 (4) | C19—C20—C21—C16 | 0.6 (4) |
C5—C6—C7—C8 | −21.8 (4) | C19—C20—C21—C14 | −177.9 (3) |
C1—C6—C7—C8 | 158.9 (3) | N3—C16—C21—C20 | −178.3 (2) |
O2—C7—C8—C12 | 144.3 (3) | C17—C16—C21—C20 | −0.5 (4) |
C6—C7—C8—C12 | −33.3 (4) | N3—C16—C21—C14 | 0.6 (3) |
O2—C7—C8—C9 | −28.8 (4) | C17—C16—C21—C14 | 178.4 (3) |
C6—C7—C8—C9 | 153.6 (3) | C15—C14—C21—C20 | 177.0 (3) |
C12—C8—C9—N1 | 2.6 (4) | C10—C14—C21—C20 | −0.7 (5) |
C7—C8—C9—N1 | 176.2 (2) | C15—C14—C21—C16 | −1.6 (3) |
N1—C10—C11—C12 | 2.8 (4) | C10—C14—C21—C16 | −179.4 (2) |
C14—C10—C11—C12 | 179.2 (2) | C8—C9—N1—C10 | −0.4 (4) |
N1—C10—C11—C13 | −172.8 (2) | C11—C10—N1—C9 | −2.3 (4) |
C14—C10—C11—C13 | 3.5 (4) | C14—C10—N1—C9 | −179.0 (2) |
C9—C8—C12—C11 | −2.0 (4) | C14—C15—N3—C16 | −1.7 (3) |
C7—C8—C12—C11 | −175.1 (2) | C22—C15—N3—C16 | 172.1 (3) |
C10—C11—C12—C8 | −0.5 (4) | C17—C16—N3—C15 | −176.9 (3) |
C13—C11—C12—C8 | 175.2 (2) | C21—C16—N3—C15 | 0.6 (3) |
C12—C11—C13—N2 | 47 (22) |
Cg3 and Cg4 are the centroids of the C1–C6 and C16–C21 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2 | 0.82 | 1.91 | 2.596 (3) | 140 |
N3—H3A···N2i | 0.86 | 2.27 | 3.110 (4) | 164 |
C2—H2···Cg3ii | 0.90 | 2.93 | 3.656 (4) | 136 |
C12—H12···Cg4iii | 0.93 | 2.99 | 3.361 (4) | 106 |
Symmetry codes: (i) −x, −y+2, −z; (ii) −x+3/2, y+1/2, −z+1/2; (iii) −x+1/2, y+1/2, −z+1/2. |
Cg3 and Cg4 are the centroids of the C1–C6 and C16–C21 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2 | 0.82 | 1.91 | 2.596 (3) | 140 |
N3—H3A···N2i | 0.86 | 2.27 | 3.110 (4) | 164 |
C2—H2···Cg3ii | 0.90 | 2.93 | 3.656 (4) | 136 |
C12—H12···Cg4iii | 0.93 | 2.99 | 3.361 (4) | 106 |
Symmetry codes: (i) −x, −y+2, −z; (ii) −x+3/2, y+1/2, −z+1/2; (iii) −x+1/2, y+1/2, −z+1/2. |
Acknowledgements
The authors thank the Department of Chemistry, IIT, Chennai, India, for the
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In modern times, analogs based on indole are significant players in a diverse array of markets such as dyes, plastics, agriculture, vitamin supplements, over-the-counterdrugs, flavour enhancers and perfumery (Barden, 2011). Indole derivatives exhibit antihepatitis B virus (Chai et al., 2006) and antibacterial (Nieto et al., 2005) activities. Indole derivatives have been found to exhibit antibacterial, antifungal (Singh et al., 2000) and antitumour activities (Andreani et al., 2001). Some of the indole alkaloids extracted from plants possess interesting cytotoxic, antitumour or antiparasitic properties (Quetin-Leclercq, 1994; Mukhopadhyay et al., 1981). Against this background, the crystal structure of the title compound has been determined and the results are presented herein.
In the title molecule, the indole unit is essentially co-planar with a maximum deviation of -0.035 Å for the C15 atom. The central pyridine (N1/C8—C12) ring is almost halfway to be orthogonal to the indole ring system (N3/C14—C21), making a dihedral angle of 43.7 (1)°. The carbonyl-bound phenyl ring (C16—C21) forms a dihedral angle of 15.7 (2)° with the plane of the indole ring system. The pyridine ring and the phenyl ring are inclined at an angle of 46.3 (1)°. The cyano bond distance C13≡N2 agrees well with the reported value of 1.141 (4) Å.
The crystal packing (Fig. 2 and Table 1) is stabilized by an intramolecular O—H···O hydrogen bond, forms S(6) ring motif. The molecules are linked into inversion dimers via N—H···N hydrogen bonds resulting in an R22(16) graph-set motif, which are stablized by C—H···π (Table 1) and π-π interactions. The Cg1···Cg2ii seperation is 3.688 (1) Å (Fig.2; Cg1 and Cg2 are centroids of the N3/C14—C16/C21 ring and N1/C8—C12 pyridine ring, repectively; symmetry codes: (ii) 1/2 - x, y - 1/2, 1/2 - z).