organic compounds
of (4-hydroxypiperidin-1-yl)(4-methylphenyl)methanone
aPG and Research Department of Physics, Queen Mary's College, Chennai-4, Tamilnadu, India, bDepartment of Chemistry, Madras Christian College, Chennai-59, India, cSCRI, Anna Hospital Campus, Chennai-106, Tamilnadu, India, and dAnna Siddha Medical College, Chennai-106, Tamilnadu, India
*Correspondence e-mail: guqmc@yahoo.com
In the title compound, C13H17NO2, the dihedral angle between the planes of the piperidine and benzene rings is 51.7 (2)°. The bond-angle sum around the N atom [359.8 (3)°] indicates sp2 of the atom. In the crystal, O—H⋯O hydrogen bonds link the molecules, forming chains along [001].
Keywords: crystal structure; piperdine derivative; hydrogen bomding.
CCDC reference: 1428660
1. Related literature
For the biological activity of piperdine derivatives, see: Pissamitski et al. (2007); Katritzky et al. (1995); Dimmock et al. (2001); Watson et al. (2000); Thomas et al. (1998); Sambath et al. (2004). For related structures, see: Revathi et al. (2015); Prathebha et al. (2015). For the synthesis, see: Revathi et al. (2015).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: APEX2 (Bruker, 2004); cell APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97.
Supporting information
CCDC reference: 1428660
https://doi.org/10.1107/S2056989015018307/zs2344sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989015018307/zs2344Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989015018307/zs2344Isup3.cml
The title compound was synthesized using a published procedure (Revathi et al., 2015). In a 250 ml round-bottomed flask, 120 mL of ethyl methyl ketone was added to 4-hydroxypiperdine (0.02 mol) and stirred at room temperature. After 5 min, triethylamine (0.04 mol) was added and the mixture was stirred for 15 min. 4-Methyl benzoyl chloride (0.04 mol) was then added and the reaction mixture was stirred at room temperature for ca. 2 h. A white precipitate of triethylammonium chloride was formed, which was removed by filtration and the filtrate was evaporated to give the crude product. This was recrystallized twice from ethyl methyl ketone giving colourless block-like crystals of the title compound (yield: 82%).
H atoms were positioned geometrically and treated as riding on their parent atoms and refined with C—H distances of 0.93–0.98 Å and an O—H distance of 0.82 Å, with Uiso(H) = 1.5 Ueq(C-methyl and O), Uiso(H)= 1.2Ueq(C, O) for other H atoms. One reflection (2 0 0) was considered to be affected by the beamstop and was omitted. The value of the
factor (Flack, 1983), although not of particular relevance but meaningless in this structure, was determined as 0(3) for 1610 Friedel pairs.The piperidine ring is one of the most recognizable structural entities among heterocyclic molecules (Katritzky, 1995). A piperidine series of gamma-secretase inhibitors have been evaluated for treatment of Alzheimer's disease (AD) (Pissamitski et al., 2007). Some piperidines were found to possess high profile biological activities, including cytotoxic and anticancer properties (Dimmock et al., 2001). The piperidine ring is a feature of oral anaesthetics and narcotic analgesics (Watson et al., 2000); Thomas et al., 1998). Piperidine derivatives are used clinically to prevent post-operative vomiting, to speed up gastric emptying before anaesthesia, to facilitate radiological investigations and to correct a variety of disturbances of gastrointestinal functions (Sambath et al., 2004).
The title compound, C13H17NO2, has been synthesized and the structure (Fig. 1) is reported herein. In this compound, The C—C distances in the piperidine ring and the benzene ring are in the range 1.497 (6)–1.515 (5) Å and 1.357 (6)–1.386 (5) Å, respectively and are comparable with literature values. The C—N distances in the piperidine ring are 1.455 (5) Å and 1.462 (5) Å] and are in good agreement with values in a similar reported structure (Revathi et al., 2015). The C7—O1 distance is 1.238 (5) Å, indicating double bond character and is comparable with the value reported previously (Prathebha et al., 2015). The dihedral angle between piperidine and benzene rings is 51.7 (2)°. The bond angle sum around the N1 atom are 359.8 (3)° indicating an sp2 φ2 = 168.41° q3 = -0.560 (4) Å, QT = 0.561 (4) Å and θ2 = 178.38 (4)°.
of the atoms. The C8—N1—C7—O1 torsion angle [-9.0 (6)°] indicates that the keto group is in a syn-periplanar (-sp) orientation with respect to the piperidine ring which adopts a chair conformation, with puckering parameters of q2 = 0.016 (4) Å,The crystal packing is stabilized by a single intermolecular O2—H···O1i hydrogen bond (Table 1), forming one-dimensional chains which extend along [001] (Fig. 2). Present also in the structure is a short intramolecular C8—H···O1 interaction [2.740 (5) Å].
For the biological activity of piperdine derivatives, see: Pissamitski et al. (2007); Katritzky et al. (1995); Dimmock et al. (2001); Watson et al. (2000); Thomas et al. (1998); Sambath et al. (2004). For related structures, see: Revathi et al. (2015); Prathebha et al. (2015). For the synthesis, see: Revathi et al. (2015).
Data collection: APEX2 (Bruker, 2004); cell
APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C13H17NO2 | F(000) = 472 |
Mr = 219.28 | Dx = 1.197 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2ac | θ = 1.7–29.8° |
a = 23.933 (5) Å | µ = 0.08 mm−1 |
b = 6.3317 (12) Å | T = 293 K |
c = 8.0269 (14) Å | Block, colourless |
V = 1216.3 (4) Å3 | 0.24 × 0.22 × 0.22 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 3454 independent reflections |
Radiation source: fine-focus sealed tube | 1668 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
ω and φ scans | θmax = 29.8°, θmin = 3.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −33→30 |
Tmin = 0.981, Tmax = 0.985 | k = −8→8 |
10595 measured reflections | l = −10→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.066 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.208 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.121P)2 + 0.297P] where P = (Fo2 + 2Fc2)/3 |
3454 reflections | (Δ/σ)max < 0.001 |
145 parameters | Δρmax = 0.28 e Å−3 |
1 restraint | Δρmin = −0.22 e Å−3 |
C13H17NO2 | V = 1216.3 (4) Å3 |
Mr = 219.28 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 23.933 (5) Å | µ = 0.08 mm−1 |
b = 6.3317 (12) Å | T = 293 K |
c = 8.0269 (14) Å | 0.24 × 0.22 × 0.22 mm |
Bruker Kappa APEXII CCD diffractometer | 3454 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 1668 reflections with I > 2σ(I) |
Tmin = 0.981, Tmax = 0.985 | Rint = 0.039 |
10595 measured reflections |
R[F2 > 2σ(F2)] = 0.066 | 1 restraint |
wR(F2) = 0.208 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.28 e Å−3 |
3454 reflections | Δρmin = −0.22 e Å−3 |
145 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O2 | 0.42250 (13) | 0.9019 (5) | 0.2011 (4) | 0.0766 (9) | |
H2A | 0.4137 | 0.8390 | 0.1158 | 0.115* | |
N1 | 0.43269 (12) | 0.5768 (5) | 0.6446 (4) | 0.0502 (8) | |
O1 | 0.42609 (13) | 0.6719 (6) | 0.9120 (3) | 0.0885 (11) | |
C10 | 0.44267 (16) | 0.7574 (6) | 0.3187 (5) | 0.0533 (9) | |
H10 | 0.4759 | 0.6870 | 0.2737 | 0.064* | |
C4 | 0.35949 (13) | 0.4254 (6) | 0.8163 (4) | 0.0482 (8) | |
C1 | 0.26666 (15) | 0.1641 (8) | 0.8753 (5) | 0.0628 (11) | |
C12 | 0.41754 (16) | 0.4528 (6) | 0.4989 (5) | 0.0545 (9) | |
H12A | 0.3877 | 0.3558 | 0.5279 | 0.065* | |
H12B | 0.4495 | 0.3701 | 0.4632 | 0.065* | |
C7 | 0.40802 (15) | 0.5691 (6) | 0.7925 (4) | 0.0505 (9) | |
C11 | 0.39864 (16) | 0.5930 (6) | 0.3578 (4) | 0.0524 (9) | |
H11A | 0.3640 | 0.6627 | 0.3883 | 0.063* | |
H11B | 0.3916 | 0.5077 | 0.2596 | 0.063* | |
C6 | 0.26126 (15) | 0.3547 (9) | 0.7954 (6) | 0.0758 (13) | |
H6 | 0.2261 | 0.3976 | 0.7599 | 0.091* | |
C5 | 0.30623 (16) | 0.4839 (7) | 0.7665 (6) | 0.0669 (11) | |
H5 | 0.3009 | 0.6125 | 0.7128 | 0.080* | |
C2 | 0.31909 (18) | 0.1055 (7) | 0.9206 (6) | 0.0742 (13) | |
H2 | 0.3245 | −0.0261 | 0.9694 | 0.089* | |
C8 | 0.47699 (16) | 0.7294 (7) | 0.6096 (5) | 0.0598 (10) | |
H8A | 0.5107 | 0.6557 | 0.5758 | 0.072* | |
H8B | 0.4853 | 0.8099 | 0.7094 | 0.072* | |
C3 | 0.36470 (16) | 0.2363 (7) | 0.8960 (6) | 0.0679 (12) | |
H3 | 0.3996 | 0.1943 | 0.9346 | 0.082* | |
C9 | 0.45847 (17) | 0.8752 (5) | 0.4737 (5) | 0.0527 (9) | |
H9A | 0.4884 | 0.9732 | 0.4482 | 0.063* | |
H9B | 0.4266 | 0.9566 | 0.5121 | 0.063* | |
C13 | 0.2170 (2) | 0.0223 (10) | 0.9085 (8) | 0.0951 (16) | |
H13A | 0.1836 | 0.0885 | 0.8674 | 0.143* | |
H13B | 0.2135 | −0.0011 | 1.0262 | 0.143* | |
H13C | 0.2223 | −0.1105 | 0.8530 | 0.143* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O2 | 0.097 (2) | 0.0792 (19) | 0.0541 (17) | 0.0001 (17) | −0.0073 (14) | 0.0175 (16) |
N1 | 0.0614 (17) | 0.0478 (18) | 0.0413 (15) | −0.0129 (14) | 0.0013 (12) | 0.0037 (14) |
O1 | 0.105 (2) | 0.117 (3) | 0.0441 (16) | −0.045 (2) | −0.0064 (15) | −0.0106 (18) |
C10 | 0.0621 (19) | 0.056 (2) | 0.0418 (18) | −0.0096 (18) | 0.0032 (15) | 0.0054 (18) |
C4 | 0.056 (2) | 0.056 (2) | 0.0323 (15) | 0.0001 (16) | −0.0009 (13) | 0.0075 (17) |
C1 | 0.062 (2) | 0.079 (3) | 0.0472 (19) | −0.016 (2) | 0.0102 (17) | 0.005 (2) |
C12 | 0.061 (2) | 0.046 (2) | 0.056 (2) | −0.0113 (17) | 0.0065 (16) | −0.002 (2) |
C7 | 0.0619 (19) | 0.050 (2) | 0.0396 (18) | −0.0035 (16) | −0.0048 (16) | 0.0088 (17) |
C11 | 0.061 (2) | 0.055 (2) | 0.0422 (17) | −0.0058 (17) | −0.0002 (14) | −0.0092 (18) |
C6 | 0.0438 (19) | 0.100 (3) | 0.084 (3) | 0.006 (2) | 0.003 (2) | 0.005 (3) |
C5 | 0.064 (2) | 0.060 (2) | 0.077 (3) | 0.0036 (19) | 0.003 (2) | 0.021 (2) |
C2 | 0.075 (3) | 0.064 (3) | 0.083 (3) | −0.020 (2) | −0.012 (2) | 0.032 (3) |
C8 | 0.064 (2) | 0.067 (3) | 0.048 (2) | −0.0260 (19) | −0.0126 (16) | 0.010 (2) |
C3 | 0.059 (2) | 0.061 (3) | 0.084 (3) | −0.0081 (19) | −0.019 (2) | 0.028 (2) |
C9 | 0.076 (2) | 0.0356 (18) | 0.0470 (18) | −0.0178 (18) | −0.0010 (16) | 0.0040 (18) |
C13 | 0.078 (3) | 0.121 (4) | 0.087 (3) | −0.041 (3) | 0.016 (3) | −0.019 (3) |
O2—C10 | 1.401 (5) | C12—H12B | 0.9700 |
O2—H2A | 0.8200 | C11—H11A | 0.9700 |
N1—C7 | 1.327 (5) | C11—H11B | 0.9700 |
N1—C12 | 1.454 (5) | C6—C5 | 1.372 (6) |
N1—C8 | 1.462 (4) | C6—H6 | 0.9300 |
O1—C7 | 1.237 (5) | C5—H5 | 0.9300 |
C10—C9 | 1.500 (5) | C2—C3 | 1.385 (5) |
C10—C11 | 1.514 (5) | C2—H2 | 0.9300 |
C10—H10 | 0.9800 | C8—C9 | 1.496 (5) |
C4—C3 | 1.363 (6) | C8—H8A | 0.9700 |
C4—C5 | 1.386 (5) | C8—H8B | 0.9700 |
C4—C7 | 1.487 (5) | C3—H3 | 0.9300 |
C1—C2 | 1.358 (6) | C9—H9A | 0.9700 |
C1—C6 | 1.373 (7) | C9—H9B | 0.9700 |
C1—C13 | 1.514 (6) | C13—H13A | 0.9600 |
C12—C11 | 1.509 (5) | C13—H13B | 0.9600 |
C12—H12A | 0.9700 | C13—H13C | 0.9600 |
C10—O2—H2A | 109.5 | C5—C6—C1 | 122.0 (4) |
C7—N1—C12 | 126.1 (3) | C5—C6—H6 | 119.0 |
C7—N1—C8 | 121.3 (3) | C1—C6—H6 | 119.0 |
C12—N1—C8 | 112.6 (3) | C6—C5—C4 | 120.9 (4) |
O2—C10—C9 | 108.7 (3) | C6—C5—H5 | 119.6 |
O2—C10—C11 | 110.4 (3) | C4—C5—H5 | 119.6 |
C9—C10—C11 | 110.2 (3) | C1—C2—C3 | 121.8 (4) |
O2—C10—H10 | 109.1 | C1—C2—H2 | 119.1 |
C9—C10—H10 | 109.1 | C3—C2—H2 | 119.1 |
C11—C10—H10 | 109.1 | N1—C8—C9 | 109.4 (3) |
C3—C4—C5 | 117.0 (3) | N1—C8—H8A | 109.8 |
C3—C4—C7 | 121.7 (3) | C9—C8—H8A | 109.8 |
C5—C4—C7 | 121.2 (3) | N1—C8—H8B | 109.8 |
C2—C1—C6 | 116.9 (3) | C9—C8—H8B | 109.8 |
C2—C1—C13 | 121.1 (4) | H8A—C8—H8B | 108.2 |
C6—C1—C13 | 122.0 (4) | C4—C3—C2 | 121.3 (4) |
N1—C12—C11 | 111.1 (3) | C4—C3—H3 | 119.3 |
N1—C12—H12A | 109.4 | C2—C3—H3 | 119.3 |
C11—C12—H12A | 109.4 | C8—C9—C10 | 111.9 (3) |
N1—C12—H12B | 109.4 | C8—C9—H9A | 109.2 |
C11—C12—H12B | 109.4 | C10—C9—H9A | 109.2 |
H12A—C12—H12B | 108.0 | C8—C9—H9B | 109.2 |
O1—C7—N1 | 121.2 (3) | C10—C9—H9B | 109.2 |
O1—C7—C4 | 119.7 (3) | H9A—C9—H9B | 107.9 |
N1—C7—C4 | 119.0 (3) | C1—C13—H13A | 109.5 |
C12—C11—C10 | 110.6 (3) | C1—C13—H13B | 109.5 |
C12—C11—H11A | 109.5 | H13A—C13—H13B | 109.5 |
C10—C11—H11A | 109.5 | C1—C13—H13C | 109.5 |
C12—C11—H11B | 109.5 | H13A—C13—H13C | 109.5 |
C10—C11—H11B | 109.5 | H13B—C13—H13C | 109.5 |
H11A—C11—H11B | 108.1 | ||
C7—N1—C12—C11 | 117.5 (4) | C13—C1—C6—C5 | 179.5 (5) |
C8—N1—C12—C11 | −58.2 (4) | C1—C6—C5—C4 | 0.5 (7) |
C12—N1—C7—O1 | 175.6 (4) | C3—C4—C5—C6 | −0.6 (6) |
C8—N1—C7—O1 | −9.0 (6) | C7—C4—C5—C6 | −177.1 (4) |
C12—N1—C7—C4 | −1.3 (6) | C6—C1—C2—C3 | 3.5 (7) |
C8—N1—C7—C4 | 174.1 (3) | C13—C1—C2—C3 | −177.9 (5) |
C3—C4—C7—O1 | −74.8 (5) | C7—N1—C8—C9 | −117.4 (4) |
C5—C4—C7—O1 | 101.5 (5) | C12—N1—C8—C9 | 58.6 (4) |
C3—C4—C7—N1 | 102.2 (4) | C5—C4—C3—C2 | 2.2 (7) |
C5—C4—C7—N1 | −81.6 (5) | C7—C4—C3—C2 | 178.7 (4) |
N1—C12—C11—C10 | 54.7 (4) | C1—C2—C3—C4 | −3.8 (8) |
O2—C10—C11—C12 | −173.3 (3) | N1—C8—C9—C10 | −57.0 (4) |
C9—C10—C11—C12 | −53.1 (4) | O2—C10—C9—C8 | 176.3 (3) |
C2—C1—C6—C5 | −1.9 (7) | C11—C10—C9—C8 | 55.1 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1i | 0.82 | 1.97 | 2.741 (4) | 156 |
C8—H8B···O1 | 0.97 | 2.33 | 2.740 (5) | 105 |
Symmetry code: (i) x, y, z−1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1i | 0.82 | 1.97 | 2.741 (4) | 156 |
Symmetry code: (i) x, y, z−1. |
Acknowledgements
The authors thank the SAIF, IIT, Madras, for providing the X-ray data collection facility.
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The piperidine ring is one of the most recognizable structural entities among heterocyclic molecules (Katritzky, 1995). A piperidine series of gamma-secretase inhibitors have been evaluated for treatment of Alzheimer's disease (AD) (Pissamitski et al., 2007). Some piperidines were found to possess high profile biological activities, including cytotoxic and anticancer properties (Dimmock et al., 2001). The piperidine ring is a feature of oral anaesthetics and narcotic analgesics (Watson et al., 2000); Thomas et al., 1998). Piperidine derivatives are used clinically to prevent post-operative vomiting, to speed up gastric emptying before anaesthesia, to facilitate radiological investigations and to correct a variety of disturbances of gastrointestinal functions (Sambath et al., 2004).
The title compound, C13H17NO2, has been synthesized and the structure (Fig. 1) is reported herein. In this compound, The C—C distances in the piperidine ring and the benzene ring are in the range 1.497 (6)–1.515 (5) Å and 1.357 (6)–1.386 (5) Å, respectively and are comparable with literature values. The C—N distances in the piperidine ring are 1.455 (5) Å and 1.462 (5) Å] and are in good agreement with values in a similar reported structure (Revathi et al., 2015). The C7—O1 distance is 1.238 (5) Å, indicating double bond character and is comparable with the value reported previously (Prathebha et al., 2015). The dihedral angle between piperidine and benzene rings is 51.7 (2)°. The bond angle sum around the N1 atom are 359.8 (3)° indicating an sp2 hybridization of the atoms. The C8—N1—C7—O1 torsion angle [-9.0 (6)°] indicates that the keto group is in a syn-periplanar (-sp) orientation with respect to the piperidine ring which adopts a chair conformation, with puckering parameters of q2 = 0.016 (4) Å, φ2 = 168.41° q3 = -0.560 (4) Å, QT = 0.561 (4) Å and θ2 = 178.38 (4)°.
The crystal packing is stabilized by a single intermolecular O2—H···O1i hydrogen bond (Table 1), forming one-dimensional chains which extend along [001] (Fig. 2). Present also in the structure is a short intramolecular C8—H···O1 interaction [2.740 (5) Å].