research communications
trans-1,2-diaminocyclohexane-κ2N,N′)cobalt(III) trichloride monohydrate
of tris(aDepartment of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556-5670, USA
*Correspondence e-mail: alappin@nd.edu
The synthesis of the title hydrated complex salt, [Co(C6H14N2)3]Cl3·H2O, from racemic trans-1,2-diaminocyclohexane and [CoCl(NH3)5]Cl2 and its structural characterization are presented in this paper. The product was synthesized in the interest of understanding the hydrogen-bonding patterns of coordination complexes. Previous characterizations of the product in the I-42d have not yielded coordinates; thus, this paper provides the first coordinates for this complex in this The octahedrally coordinated cation adopts twofold rotation symmetry, with outer-sphere chloride counter-ions and solvent water molecules forming a hydrogen-bonded network with amine H atoms.
Keywords: crystal structure; cobalt(III); 1,2-diaminocyclohexane; coordination complex; hydrogen-bonding patterns.
CCDC reference: 1441534
1. Chemical context
We are interested in the hydrogen-bonding patterns of various coordination complexes, especially those that incorporate optically active ligands, where the role of hydrogen bonding in the chiral discrimination between coordination complexes is important. As part of our studies, we prepared the title complex by the reaction of racemic trans-(R,R,S,S)-1,2-diaminocyclohexane with [Co(NH3)5Cl]2+ in aqueous solution at 323 K. The resulting complex is a and does not exhibit optical activity. Isolation of optically active forms is being undertaken.
This complex was first reported in 1937 (Jaeger & Bijkerk, 1937) and by optical crystallography and X-ray diffraction, the was determined to be P61 and/or P65. There have been several, successive studies on this compound, and all are reported in a variety of space groups and configurations of the ligand (P61(5): Jaeger & Bijkerk, 1937; [lel3] Marumo et al., 1970; [lel2ob] Sato & Saito, 1977; C2: [ob3] Kobayashi et al., 1972; R32: [ob3] Kobayashi et al., 1983; I2d, Andersen et al., 1973). Note: the 1983 Kobyashi article is a correction of the reported for the 1972 paper. The Andersen structure was a unit-cell determination and heavy-atom coordinate prediction based on powder diffraction data. No coordinates are available for that structure. Herein, we report the structural characterization of tris(trans-1,2 diaminocyclohexane)cobalt(III) chloride monohydrate in I2d.
2. Structural commentary
The cation crystallizes on a twofold rotation axis at [x, 0.25, 0.625], thus, only half of the cation is represented in the (Fig. 1). One chloride is located on the twofold axis at [0.75, y, 0.875] and the remaining independent chloride anion occupies a general position within the lattice. The water molecule of crystallization is also in a general position, but was modeled as a partial occupancy species (vide infra). The 1,2-diaminocyclohexane ligands adopt a lel3, Δ (λ,λ,λ) configuration with the (R,R)-ligand in the featured example. The cobalt atom adopts an octahedral coordination environment with only small distortions from an ideal geometry (Table 1). The 1,2-diaminocyclohexane ligands are unexceptional.
3. Comparison with previously reported structures
An inspection of the structure and comparison with the Marumo lel3 complex gives an r.m.s. fit of 0.0706 for the cobalt and nitrogen atoms (Marumo et al., 1970; Macrae et al., 2006). The predominant difference between the Marumo structure and that reported here is the molecular symmetry. The Marumo structure adopts C3 symmetry, with only one unique ligand. The structure herein adopts C2 symmetry with one complete and one half ligand in the asymmetric unit.
Perhaps the most surprising change when compared with the Andersen structure is the contraction in cell parameters and overall cell-volume reduction. The cell parameters reported by Andersen are a = 19.208, c = 13.908 Å, V = 5131.3 Å3 (Andersen et al., 1973). Our study has a = 18.786, c = 13.857 Å and V = 4830.3 Å3. This change represents a 4.6% reduction in cell volume, with a and b contracting in a concerted fashion by nearly 0.5 Å. Typically one might expect a contraction of around 0.1 to 0.2 Å upon cooling, similar to that observed for the change in c. This observation led us to undertake variable temperature studies to determine if this was actually the case. Data on a crystal of the title compound were recorded at 120 K, 250 K and 293 K. Cell parameters and are given in Table 2. It should be noted that the redetermination of the at room temperature with a single crystal sample yielded a that is approximately 100 Å3 smaller in volume than that calculated originally from powder diffraction data.
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4. Supramolecular features
The complex forms a hydrogen-bonded network with the amino nitrogen atoms on the cation serving as donors to nearby chlorine atoms and the water molecule (Fig. 2, Table 3). Although the water hydrogen atoms could not be located, there are contacts to nearby chlorine atoms from the oxygen atom at reasonable hydrogen-bond contact distances (Table 3). Close inspection of the Fourier difference map reveals several locations for potential hydrogen-atom sites on the water oxygen. However, none of these sites refines suitably when modeled as a hydrogen atom. Further exacerbating this situation is the disorder apparent with this lattice water molecule, because through symmetry there is another water oxygen atom located only 2.11 Å distant. Clearly this is unreasonable and reflects the disorder in this molecule. The water of crystallization and chlorine anions are arranged within discrete pockets within the lattice. Other contacts are simple van der Waals interactions.
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5. Database survey
This structure was first reported in 1937 (Jaeger & Bijkerk, 1937) with the P61 and P65 at room temperature. Other reports of the structure with the P61 were in 1970 (Marumo et al., 1970) and 1977 (Sato & Saito, 1977), both at room temperature. The structure was also reported in 1972 (Kobayashi et al., 1972) with the C2 and 1983 (Kobayashi et al., 1983) with the R32 The first report of the structure with the I2d was in 1973 (Andersen et al., 1973). This structure is at room temperature and no coordinates were provided by the authors. The structure presented in this paper has the same I2d and provides coordinates for the structure at cryogenic temperatures.
6. Synthesis and crystallization
0.56 g of [Co(NH3)5Cl]Cl2 was dissolved in 200 mL of DI water and allowed to stand overnight. 1.54 g of racemic trans-(R,R,S,S)1,2-diaminocyclohexane was added along with a small amount of The mixture was stirred and heated at 313–323K for 2 d. The solution was filtered through a SP Sephadex C25 column. Using first 0.01 M HCl then 1 M HCl, the product was collected from the column. The fractions were placed in evaporation dishes and allowed to dry for three weeks. Orange crystals formed in the evaporation dish and were harvested for analysis.
7. Refinement
Crystal data, data collection and structure . All non-hydrogen atoms were refined with anisotropic atomic displacement parameters. Hydrogen atoms were included in geometrically calculated positions with Uiso(H) = 1.2Ueq(C/N). C—H distances were fixed at 0.95 Å and N—H distances fixed at 0.91 Å.
details are summarized in Table 4
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The water of crystallization was determined to be partially occupied by inspection of the displacement parameters during
The occupancy was set to 50% in the final model which yielded reasonable displacement parameters. Hydrogen atoms could not be located or reliably modeled on the water molecule, but have been included in the chemical formula for completeness.Supporting information
CCDC reference: 1441534
10.1107/S2056989015023683/lh5797sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015023683/lh5797Isup2.hkl
Data collection: APEX2 (Bruker, 2015); cell
SAINT (Bruker, 2015); data reduction: SAINT (Bruker, 2015); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009) and publCIF (Westrip, 2010).[Co(C6H14N2)3]Cl3·H2O | Dx = 1.429 Mg m−3 |
Mr = 525.87 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, I42d | Cell parameters from 9897 reflections |
a = 18.7857 (14) Å | θ = 2.8–24.8° |
c = 13.8572 (12) Å | µ = 1.05 mm−1 |
V = 4890.2 (9) Å3 | T = 120 K |
Z = 8 | Rod, orange |
F(000) = 2240 | 0.22 × 0.06 × 0.05 mm |
Bruker APEXII diffractometer | 2707 independent reflections |
Radiation source: fine-focus sealed tube | 2416 reflections with I > 2σ(I) |
Bruker TRIUMPH curved-graphite monochromator | Rint = 0.068 |
Detector resolution: 8.33 pixels mm-1 | θmax = 27.2°, θmin = 1.8° |
combination of ω and φ–scans | h = −24→24 |
Absorption correction: numerical (SADABS; Krause et al., 2015) | k = −24→24 |
Tmin = 0.809, Tmax = 0.926 | l = −17→17 |
43332 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.047 | H-atom parameters constrained |
wR(F2) = 0.130 | w = 1/[σ2(Fo2) + (0.0844P)2 + 6.4309P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.010 |
2707 reflections | Δρmax = 1.14 e Å−3 |
137 parameters | Δρmin = −0.62 e Å−3 |
0 restraints | Absolute structure: Flack x determined using 1004 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013). |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.003 (7) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Co1 | 0.86364 (5) | 0.2500 | 0.6250 | 0.0199 (2) | |
Cl1 | 0.85979 (10) | 0.08706 (8) | 0.43019 (16) | 0.0553 (5) | |
Cl2 | 0.7500 | 0.15300 (10) | 0.8750 | 0.0324 (4) | |
N1 | 0.9360 (2) | 0.2216 (2) | 0.5307 (3) | 0.0265 (9) | |
H1A | 0.9779 | 0.2126 | 0.5612 | 0.032* | |
H1B | 0.9219 | 0.1813 | 0.4996 | 0.032* | |
N2 | 0.8689 (2) | 0.3445 (2) | 0.5631 (4) | 0.0289 (10) | |
H2A | 0.8301 | 0.3513 | 0.5249 | 0.035* | |
H2B | 0.8693 | 0.3791 | 0.6090 | 0.035* | |
N3 | 0.7858 (2) | 0.2801 (2) | 0.7122 (3) | 0.0239 (9) | |
H3A | 0.7819 | 0.2488 | 0.7621 | 0.029* | |
H3B | 0.7956 | 0.3238 | 0.7370 | 0.029* | |
C1 | 0.9455 (5) | 0.2804 (4) | 0.4598 (6) | 0.057 (2) | |
H1 | 0.9047 | 0.2750 | 0.4141 | 0.068* | |
C2 | 0.9338 (4) | 0.3487 (5) | 0.5050 (7) | 0.063 (2) | |
H2 | 0.9740 | 0.3562 | 0.5511 | 0.075* | |
C3 | 0.9375 (4) | 0.4089 (4) | 0.4326 (7) | 0.060 (2) | |
H3C | 0.9309 | 0.4549 | 0.4662 | 0.071* | |
H3D | 0.8986 | 0.4036 | 0.3849 | 0.071* | |
C4 | 1.0086 (5) | 0.4087 (6) | 0.3809 (9) | 0.092 (4) | |
H4A | 1.0473 | 0.4181 | 0.4277 | 0.110* | |
H4B | 1.0094 | 0.4468 | 0.3316 | 0.110* | |
C5 | 1.0206 (5) | 0.3362 (5) | 0.3323 (6) | 0.065 (2) | |
H5A | 0.9874 | 0.3319 | 0.2772 | 0.078* | |
H5B | 1.0696 | 0.3351 | 0.3061 | 0.078* | |
C6 | 1.0107 (3) | 0.2723 (4) | 0.3971 (4) | 0.0418 (17) | |
H6A | 1.0058 | 0.2289 | 0.3570 | 0.050* | |
H6B | 1.0532 | 0.2665 | 0.4385 | 0.050* | |
C7 | 0.7181 (3) | 0.2825 (3) | 0.6575 (4) | 0.0251 (10) | |
H7 | 0.7186 | 0.3259 | 0.6157 | 0.030* | |
C8 | 0.6525 (3) | 0.2853 (3) | 0.7199 (4) | 0.0311 (12) | |
H8A | 0.6529 | 0.3296 | 0.7587 | 0.037* | |
H8B | 0.6523 | 0.2443 | 0.7648 | 0.037* | |
C9 | 0.5856 (3) | 0.2833 (3) | 0.6569 (5) | 0.0359 (13) | |
H9A | 0.5840 | 0.3263 | 0.6157 | 0.043* | |
H9B | 0.5428 | 0.2833 | 0.6985 | 0.043* | |
O1 | 0.9506 (10) | 0.4729 (6) | 0.6332 (9) | 0.104 (6) | 0.5 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.0181 (4) | 0.0195 (4) | 0.0221 (4) | 0.000 | 0.000 | −0.0026 (4) |
Cl1 | 0.0471 (9) | 0.0311 (8) | 0.0877 (13) | −0.0106 (7) | 0.0231 (10) | −0.0252 (8) |
Cl2 | 0.0324 (9) | 0.0358 (10) | 0.0291 (9) | 0.000 | 0.0006 (8) | 0.000 |
N1 | 0.023 (2) | 0.030 (2) | 0.027 (2) | 0.0010 (18) | 0.0021 (17) | −0.0049 (18) |
N2 | 0.022 (2) | 0.024 (2) | 0.041 (2) | −0.0001 (18) | −0.003 (2) | 0.0034 (18) |
N3 | 0.023 (2) | 0.024 (2) | 0.025 (2) | 0.0015 (18) | 0.0006 (17) | −0.0056 (17) |
C1 | 0.071 (5) | 0.043 (4) | 0.055 (4) | 0.003 (4) | 0.032 (4) | 0.013 (3) |
C2 | 0.050 (4) | 0.058 (5) | 0.080 (6) | 0.014 (4) | 0.023 (4) | 0.035 (4) |
C3 | 0.030 (3) | 0.057 (5) | 0.091 (6) | −0.003 (3) | −0.006 (4) | 0.046 (4) |
C4 | 0.055 (5) | 0.104 (9) | 0.117 (9) | −0.008 (5) | 0.008 (6) | 0.070 (8) |
C5 | 0.068 (5) | 0.086 (7) | 0.042 (4) | −0.026 (5) | 0.017 (4) | 0.014 (4) |
C6 | 0.026 (3) | 0.074 (5) | 0.026 (3) | −0.001 (3) | 0.000 (2) | 0.009 (3) |
C7 | 0.020 (2) | 0.027 (2) | 0.029 (2) | 0.000 (2) | −0.0004 (19) | −0.002 (2) |
C8 | 0.025 (3) | 0.037 (3) | 0.031 (3) | 0.005 (2) | 0.004 (2) | −0.001 (2) |
C9 | 0.025 (3) | 0.036 (3) | 0.047 (3) | 0.005 (2) | 0.005 (2) | 0.003 (3) |
O1 | 0.206 (18) | 0.049 (6) | 0.058 (7) | 0.026 (9) | −0.076 (10) | −0.016 (6) |
Co1—N1 | 1.959 (4) | C3—C4 | 1.516 (12) |
Co1—N1i | 1.959 (4) | C3—H3C | 0.9900 |
Co1—N2i | 1.974 (4) | C3—H3D | 0.9900 |
Co1—N2 | 1.974 (4) | C4—C5 | 1.536 (15) |
Co1—N3i | 1.980 (4) | C4—H4A | 0.9900 |
Co1—N3 | 1.980 (4) | C4—H4B | 0.9900 |
N1—C1 | 1.489 (8) | C5—C6 | 1.510 (11) |
N1—H1A | 0.9100 | C5—H5A | 0.9900 |
N1—H1B | 0.9100 | C5—H5B | 0.9900 |
N2—C2 | 1.462 (9) | C6—H6A | 0.9900 |
N2—H2A | 0.9100 | C6—H6B | 0.9900 |
N2—H2B | 0.9100 | C7—C8 | 1.506 (7) |
N3—C7 | 1.482 (6) | C7—C7i | 1.516 (10) |
N3—H3A | 0.9100 | C7—H7 | 1.0000 |
N3—H3B | 0.9100 | C8—C9 | 1.531 (8) |
C1—C2 | 1.445 (12) | C8—H8A | 0.9900 |
C1—C6 | 1.508 (9) | C8—H8B | 0.9900 |
C1—H1 | 1.0000 | C9—C9i | 1.532 (13) |
C2—C3 | 1.513 (9) | C9—H9A | 0.9900 |
C2—H2 | 1.0000 | C9—H9B | 0.9900 |
N1—Co1—N1i | 92.2 (3) | C3—C2—H2 | 106.6 |
N1—Co1—N2i | 90.61 (19) | C2—C3—C4 | 110.6 (6) |
N1i—Co1—N2i | 85.4 (2) | C2—C3—H3C | 109.5 |
N1—Co1—N2 | 85.4 (2) | C4—C3—H3C | 109.5 |
N1i—Co1—N2 | 90.61 (19) | C2—C3—H3D | 109.5 |
N2i—Co1—N2 | 174.2 (3) | C4—C3—H3D | 109.5 |
N1—Co1—N3i | 91.58 (17) | H3C—C3—H3D | 108.1 |
N1i—Co1—N3i | 175.8 (2) | C3—C4—C5 | 109.9 (8) |
N2i—Co1—N3i | 92.64 (19) | C3—C4—H4A | 109.7 |
N2—Co1—N3i | 91.62 (19) | C5—C4—H4A | 109.7 |
N1—Co1—N3 | 175.8 (2) | C3—C4—H4B | 109.7 |
N1i—Co1—N3 | 91.58 (17) | C5—C4—H4B | 109.7 |
N2i—Co1—N3 | 91.62 (19) | H4A—C4—H4B | 108.2 |
N2—Co1—N3 | 92.64 (19) | C6—C5—C4 | 115.2 (7) |
N3i—Co1—N3 | 84.7 (3) | C6—C5—H5A | 108.5 |
C1—N1—Co1 | 108.8 (4) | C4—C5—H5A | 108.5 |
C1—N1—H1A | 109.9 | C6—C5—H5B | 108.5 |
Co1—N1—H1A | 109.9 | C4—C5—H5B | 108.5 |
C1—N1—H1B | 109.9 | H5A—C5—H5B | 107.5 |
Co1—N1—H1B | 109.9 | C1—C6—C5 | 111.2 (7) |
H1A—N1—H1B | 108.3 | C1—C6—H6A | 109.4 |
C2—N2—Co1 | 109.3 (4) | C5—C6—H6A | 109.4 |
C2—N2—H2A | 109.8 | C1—C6—H6B | 109.4 |
Co1—N2—H2A | 109.8 | C5—C6—H6B | 109.4 |
C2—N2—H2B | 109.8 | H6A—C6—H6B | 108.0 |
Co1—N2—H2B | 109.8 | N3—C7—C8 | 114.1 (4) |
H2A—N2—H2B | 108.3 | N3—C7—C7i | 106.2 (3) |
C7—N3—Co1 | 109.3 (3) | C8—C7—C7i | 111.7 (4) |
C7—N3—H3A | 109.8 | N3—C7—H7 | 108.2 |
Co1—N3—H3A | 109.8 | C8—C7—H7 | 108.2 |
C7—N3—H3B | 109.8 | C7i—C7—H7 | 108.2 |
Co1—N3—H3B | 109.8 | C7—C8—C9 | 110.0 (4) |
H3A—N3—H3B | 108.3 | C7—C8—H8A | 109.7 |
C2—C1—N1 | 110.7 (6) | C9—C8—H8A | 109.7 |
C2—C1—C6 | 117.6 (7) | C7—C8—H8B | 109.7 |
N1—C1—C6 | 113.7 (6) | C9—C8—H8B | 109.7 |
C2—C1—H1 | 104.4 | H8A—C8—H8B | 108.2 |
N1—C1—H1 | 104.4 | C8—C9—C9i | 110.4 (4) |
C6—C1—H1 | 104.4 | C8—C9—H9A | 109.6 |
C1—C2—N2 | 108.5 (7) | C9i—C9—H9A | 109.6 |
C1—C2—C3 | 111.6 (7) | C8—C9—H9B | 109.6 |
N2—C2—C3 | 116.4 (6) | C9i—C9—H9B | 109.6 |
C1—C2—H2 | 106.6 | H9A—C9—H9B | 108.1 |
N2—C2—H2 | 106.6 | ||
Co1—N1—C1—C2 | 32.0 (8) | C2—C3—C4—C5 | 56.6 (11) |
Co1—N1—C1—C6 | 167.1 (5) | C3—C4—C5—C6 | −51.3 (11) |
N1—C1—C2—N2 | −45.9 (10) | C2—C1—C6—C5 | −43.7 (10) |
C6—C1—C2—N2 | −179.1 (6) | N1—C1—C6—C5 | −175.6 (6) |
N1—C1—C2—C3 | −175.5 (6) | C4—C5—C6—C1 | 43.1 (10) |
C6—C1—C2—C3 | 51.3 (11) | Co1—N3—C7—C8 | 164.5 (4) |
Co1—N2—C2—C1 | 37.8 (8) | Co1—N3—C7—C7i | 41.0 (6) |
Co1—N2—C2—C3 | 164.7 (7) | N3—C7—C8—C9 | −176.7 (5) |
C1—C2—C3—C4 | −57.2 (11) | C7i—C7—C8—C9 | −56.2 (7) |
N2—C2—C3—C4 | 177.5 (9) | C7—C8—C9—C9i | 57.0 (7) |
Symmetry code: (i) x, −y+1/2, −z+5/4. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Cl1ii | 0.91 | 2.46 | 3.270 (5) | 148 |
N1—H1B···Cl1 | 0.91 | 2.33 | 3.222 (5) | 167 |
N2—H2A···Cl2iii | 0.91 | 2.57 | 3.433 (5) | 159 |
N2—H2B···O1 | 0.91 | 2.35 | 3.019 (14) | 130 |
N3—H3A···Cl2 | 0.91 | 2.46 | 3.352 (5) | 167 |
N3—H3B···Cl1i | 0.91 | 2.36 | 3.223 (5) | 158 |
O1···Cl1i | 3.296 (18) | |||
O1···Cl1iv | 3.393 (15) | |||
O1···Cl1v | 3.287 (12) | |||
C2—H2···Cl1iv | 1.00 | 2.78 | 3.772 (10) | 173 |
C3—H3C···O1 | 0.99 | 2.37 | 3.039 (15) | 124 |
C8—H8A···Cl1vi | 0.99 | 2.86 | 3.780 (6) | 156 |
C8—H8B···Cl2 | 0.99 | 2.94 | 3.762 (6) | 141 |
Symmetry codes: (i) x, −y+1/2, −z+5/4; (ii) y+1, −x+1, −z+1; (iii) −x+3/2, −y+1/2, z−1/2; (iv) y+1, x−1/2, z+1/4; (v) −y+1, −x+3/2, z+1/4; (vi) −x+3/2, −y+1/2, z+1/2. |
120 K | 250 K | 293 K | |
a, c (Å) | 18.960 (3), 13.642 (2) | 19.039 (9), 13.651 (7) | 19.210 (10), 13.567 (8) |
Vol (Å3) | 4903.8 | 4948.6 | 5007.1 |
% Vol change (w.r.t. 293 K) | 2.1 | 1.2 | 0.0 |
R[F2 > 2σ(F2)], wR(F2), S | 0.0525, 0.1401, 1.028 | 0.0386, 0.1078, 1.029 | 0.0586, 0.1617, 1.017 |
Data recorded on a second crystal selected from same batch. Crystal showed signs of degradation at higher temperatures, presumably due to solvent loss. Inspection of the crystal after 293 K data set showed fracturing within the crystal. |
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