research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890
Volume 72| Part 3| March 2016| Pages 363-369

Crystal structures of four indole derivatives with a phenyl substituent at the 2-position and a carbonyl group at the 3-position: the C(6) N—H⋯O chain remains the same, but the weak reinforcing inter­actions are different

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aDepartment of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland, and bFundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos-Far Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil
*Correspondence e-mail: w.harrison@abdn.ac.uk

Edited by D.-J. Xu, Zhejiang University (Yuquan Campus), China (Received 27 January 2016; accepted 14 February 2016; online 20 February 2016)

We describe the crystal structures of four indole derivatives with a phenyl ring at the 2-position and different carbonyl-linked substituents at the 3-position, namely 1-(2-phenyl-1H-indol-3-yl)ethanone, C16H13NO, (I), 2-cyclo­hexyl-1-(2-phenyl-1H-indol-3-yl)ethanone, C22H23NO, (II), 3,3-dimethyl-1-(2-phenyl-1H-indol-3-yl)butan-1-one, C20H21NO, (III), and 3-benzoyl-2-phenyl-1H-indole, C21H15NO, (IV). In each case, the carbonyl-group O atom lies close to the indole-ring plane and points towards the benzene ring. The dihedral angles between the indole ring system and 2-phenyl ring for these structures are clustered in a narrow range around 65°. The dominant inter­molecular inter­action in each case is an N—H⋯O hydrogen bond, which generates a C(6) chain, although each structure possesses a different crystal symmetry. The C(6) chains are consolidated by different (C—H⋯O, C—H⋯π and ππ stacking) weak inter­actions, with little consistency between the structures.

1. Chemical context

Indole derivatives are widely studied due to their utility in many areas, including in the dye, plastics, agriculture and perfumery fields and as vitamin supplements and flavour enhancers (Barden, 2011[Barden, T. C. (2011). Top. Heterocycl. Chem. 26, 31-46.]). However, it is in the pharmaceutical field that most inter­est has been shown. Indoles, both naturally occurring and man-made, have been found to have activity as anti­hypertensive drugs, anti­depressants, anti­psychotic agents, anti-emetics, analgesics, anti-asthmatics, anti­virals, beta blockers, inhibitors of RNA polymerase-11, agonists for the cannabinoid receptor, non-nucleoside reverse transcriptase inhibitors, opioid agonists, sexual dysfunctional agents, etc. (França et al., 2014[França, P. H. B., Barbosa, D. P., da Silva, D. L., Ribeiro, E. A. N., Santana, A. E. G., Santos, B. V. O., Barbosa-Filho, J. M., Quintans, J. S. S., Barreto, R. S. S., Quintans-Júnior, L. J. & de Araújo-Júnior, J. X. (2014). BioMed. Res. Int. Article ID 375423.]; Kaushik et al., 2013[Kaushik, N. K., Kaushik, N., Attri, P., Kumar, N., Kim, C. H., Verma, A. K. & Choi, E. H. (2013). Molecules, 18, 6620-6662.]; Biswal et al., 2012[Biswal, S., Sahoo, U., Sethy, S., Kumar, H. K. S. & Banerjee, M. (2012). Asian J. Pharm. Clin. Res. 5, 1-6.]; Sharma et al., 2010[Sharma, V., Kumar, P. & Pathaka, D. J. (2010). J. Heterocycl. Chem. 47, 491-501.]).

[Scheme 1]

As part of our ongoing synthetic and biological (Kerr, 2013[Kerr, J. R. (2013). PhD thesis, University of Aberdeen, Scotland.]) and structural studies in this area (Kerr et al., 2015[Kerr, J. R., Trembleau, L., Storey, J. M. D., Wardell, J. L. & Harrison, W. T. A. (2015). Acta Cryst. E71, 654-659.]) we report herein the crystal structures of four indole derivatives, namely: 1-(2-phenyl-1H-indol-3-yl)ethanone, C16H13NO, (I)[link], 2-cyclo­hexyl-1-(2-phenyl-1H-indol-3-yl)ethanone, C22H23NO, (II)[link], 3,3-dimethyl-1-(2-phenyl-1H-indol-3-yl)butan-1-one, C20H21NO, (III)[link], and 3-benzoyl-2-phenyl-1H-indole, C21H15NO, (IV)[link].

As we discuss below, each structure features C(6) N—H⋯O hydrogen-bonded chains but with different crystal symmetries and weak reinforcing effects (C—H⋯O and C—H⋯π inter­actions and aromatic ππ stacking).

2. Structural commentary

The mol­ecular structure of (I)[link] is illustrated in Fig. 1[link]. The dihedral angles between the mean plane of the indole ring system (r.m.s. deviation = 0.018 Å) and the C9/C10/O1 grouping and the C11-benzene ring are 8.35 (4) and 65.44 (4)°, respectively. The C6—C7—C9 and C8—C7—C9 bond angles are 124.57 (9) and 129.04 (10)°, respectively. O1 is syn to H5 [C6—C7—C9—O1 = −8.14 (16)°] and a short intra­molecular contact occurs (H5⋯O1 = 2.54 Å), although we do not regard this as a bond. The C8—C7—C9—C10 torsion angle of −6.53 (16)° shows that C8 and C10 are almost eclipsed.

[Figure 1]
Figure 1
The mol­ecular structure of (I)[link], showing 50% displacement ellipsoids.

The mol­ecular structure of (II)[link] is shown in Fig. 2[link]. The cyclo­hexyl ring adopts a normal chair conformation with the exocyclic C—C bond in an equatorial orientation. The dihedral angles between the indole ring system (r.m.s. deviation = 0.012 Å) and the C9/C10/O1 grouping and the C11-benzene ring are 21.17 (14) and 68.58 (8)°, respectively. The C6—C7—C9 and C8—C7—C9 bond angles are 124.3 (2) and 129.3 (2)°, respectively and the C8—C7—C9—C10 torsion angle is 16.2 (4)°. This is significantly larger than the equivalent value for (I)[link], possibly due to steric inter­actions between the pendant ring systems: the twist about the C7—C9 bond in (II)[link] is in the opposite sense to that in (I)[link] [C6—C7—C9—O1 = 16.4 (3)°].

[Figure 2]
Figure 2
The mol­ecular structure of (II)[link], showing 50% displacement ellipsoids.

Fig. 3[link] shows the mol­ecular structure of (III)[link]. The indole ring system (r.m.s. deviation = 0.007 Å) subtends dihedral angles of 15.60 (8) and 70.07 (3)° with the C9/C10/O1 grouping and the C15 benzene ring, respectively. The C7—C9—C10—C11 torsion angle is 137.54 (9)°. and the C6—C7—C9 and C8—C7—C9 bond angles are 124.3 (2) and 129.3 (2)°, respectively. The C8—C7—C9—C10 torsion angle is −14.06 (15)°. The C6—C7—C9—O1 torsion angle of −13.96 (14)° shows that the C=O bond is slightly twisted away from the indole plane.

[Figure 3]
Figure 3
The mol­ecular structure of (III)[link], showing 50% displacement ellipsoids.

Compound (IV)[link] crystallizes with two mol­ecules in the asymmetric unit, as shown in Fig. 4[link]. The mol­ecules have similar but not identical conformations, as indicated by the r.m.s. overlay fit of 0.102 Å for the 23 non-hydrogen atoms. The main differences are a slightly different twist of the benzene ring at the 2-position and the fact that atoms C10 and C31 deviate slightly from the indole ring plane, but in opposite directions. This is reflected in the metrical data for the individual mol­ecules: in the N1-species, the indole ring system (r.m.s. deviation = 0.009 Å) subtends dihedral angles of 7.32 (15), 64.66 (7), and 54.57 (7)° with the C9/C10/O1 group, the C10-ring and the C16-ring, respectively. Equivalent data for the N2-mol­ecule (r.m.s. deviation for the indole ring system = 0.009 Å) are 9.76 (13) (C30/C31/O2), 60.92 (7) (C31-ring) and 56.97 (7)° (C37-ring). In the N1-mol­ecule, the C6—C7—C9 and C8—C7—C9 bond angles are 123.5 (2) and 130.5 (2)°, respectively and the C8—C7—C9—C10 torsion angle is 7.1 (4)°. Equivalent data for the N2-mol­ecule are C27—C28—C30 [124.0 (2)°], C29—C28—C30 [130.2 (3)°] and C29—C28—C30—C31 [–9.7 (4)°].

[Figure 4]
Figure 4
The mol­ecular structure of (IV)[link], showing 50% displacement ellipsoids. The N—H⋯O and C—H⋯π bonds are indicated by double-dashed lines.

3. Supra­molecular features

In each structure, as might be expected, the dominant supra­molecular motif is an N—H⋯O=C hydrogen bond, which generates a C(6) chain in every case. However, it is notable that the same chain motif is reinforced by different weak inter­actions in these structures, as described below and listed in Tables 1[link]–4[link][link][link], for (I)–(IV), respectively.

Table 1
Hydrogen-bond geometry (Å, °) for (I)[link]

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1i 0.898 (15) 2.018 (15) 2.8630 (12) 156.3 (12)
C12—H12⋯O1ii 0.95 2.53 3.3583 (14) 146
Symmetry codes: (i) x-1, y, z; (ii) -x+1, -y+1, -z+1.

Table 2
Hydrogen-bond geometry (Å, °) for (II)[link]

Cg1 and Cg2 are the centroids of the N1/C1/C6–C8 ring and the C1–C6 ring, respectively.

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1i 0.91 (3) 1.94 (3) 2.806 (3) 158 (2)
C20—H20⋯Cg1ii 0.95 2.75 3.503 (3) 136
C21—H21⋯Cg2ii 0.95 2.61 3.437 (3) 146
Symmetry codes: (i) x+1, y, z; (ii) [-x+1, y-{\script{1\over 2}}, -z+{\script{1\over 2}}].

Table 3
Hydrogen-bond geometry (Å, °) for (III)[link]

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O1i 0.909 (13) 1.953 (13) 2.7950 (11) 153.3 (12)
Symmetry code: (i) [-x+y+{\script{1\over 3}}, -x+{\script{2\over 3}}, z-{\script{1\over 3}}].

Table 4
Hydrogen-bond geometry (Å, °) for (IV)[link]

Cg8, Cg1, Cg7, Cg3 and Cg6 are the centroids of the C31–C36, N1/C1/C6–C8, C22–C27, C10–C15 and N2/C22/C27–C29 rings, respectively.

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O2 0.88 1.91 2.786 (3) 176
N2—H2⋯O1i 0.88 1.90 2.775 (3) 171
C20—H20⋯O1ii 0.95 2.44 3.324 (3) 155
C41—H41⋯O2iii 0.95 2.37 3.239 (3) 152
C2—H2ACg8 0.95 2.81 3.715 (3) 158
C14—H14⋯Cg1ii 0.95 2.89 3.616 (3) 134
C17—H17⋯Cg7iv 0.95 2.62 3.508 (3) 156
C23—H23⋯Cg3i 0.95 2.72 3.608 (3) 156
C35—H35⋯Cg6iii 0.95 2.80 3.527 (3) 134
Symmetry codes: (i) x+1, y, z; (ii) [-x, y-{\script{1\over 2}}, -z+{\script{1\over 2}}]; (iii) [-x+1, y+{\script{1\over 2}}, -z+{\script{1\over 2}}]; (iv) -x+1, -y+1, -z+1.

In the triclinic crystal of (I)[link], the N1—H1⋯O1i [symmetry code: (i) x – 1, y, z] hydrogen bond links the mol­ecules into [100] chains with the aforementioned C(6) chain motif in which adjacent mol­ecules are related by translational symmetry. In addition, a C12—H12⋯O1ii [symmetry code: (ii) 1 – x, 1 – y, 1 – z] inter­action is seen. By itself, this generates inversion dimers (Fig. 5[link]) with an R22(14) motif: the twisting of the C11 ring relative to the indole skeleton appears to optimize the geometry for this inter­action. Taken together, the N—H⋯O and C—H⋯O bonds in (I)[link] lead to double chains propagating in [100] (Fig. 6[link]). Inversion symmetry means that the sense of the N—H⋯O bonds are opposed in the two chains. Packing between the chains does not feature any directional inter­actions beyond typical van der Waals contacts and there is no aromatic ππ stacking in (I)[link].

[Figure 5]
Figure 5
An inversion dimer in the crystal of (I)[link] linked by a pair of C—H⋯O inter­actions (double-dashed lines). Symmetry code as in Table 1[link].
[Figure 6]
Figure 6
Partial packing diagram for (I)[link], showing the formation of [100] double chains linked by N—H⋯O and C—H⋯O hydrogen bonds (double-dashed lines). Symmetry codes as in Table 1[link].

In the ortho­rhom­bic crystal of (II)[link], the mol­ecules are linked by N1—H1—O2i [symmetry code: (i) x + 1, y, z] hydrogen bonds into [100] chains (Fig. 7[link]) characterized by a C(6) motif: adjacent mol­ecules are again related by simple unit-cell translation. There is no reinforcement of the chain bonding in this case, but a pair of weak C—H⋯π inter­actions occur, which arise from adjacent C—H groupings of the pendant C17–C22 benzene ring to an adjacent indole ring (Fig. 8[link]), and result in [010] chains. Taken together, the N—H⋯O and C—H⋯π bonds in (II)[link] lead to (001) sheets.

[Figure 7]
Figure 7
Partial packing diagram for (II)[link], showing the formation of [100] chains linked by N—H⋯O hydrogen bonds (double-dashed lines). Symmetry code as in Table 2[link].
[Figure 8]
Figure 8
Partial packing diagram for (II)[link] showing the formation of [010] chains linked by pairs of C—H⋯π inter­actions. Symmetry code as in Table 2[link].

The extended structure in (III)[link] conforms to rhombohedral (trigonal) crystal symmetry. Once again, adjacent mol­ecules are linked into C(6) chains by N1—H1⋯O2i [symmetry code: (i) [1\over3] − x + y, [2\over3] − x, z − [1\over3]] and symmetry-equivalent hydrogen bonds. The chain propagates in the [001] direction (Fig. 9[link]) and the chain that incorporates the asymmetric mol­ecule describes an anti­clockwise helix, when viewed from above, about the 31 symmetry element at ([1\over3], [1\over3], z). The centrosymmetric space group leads, of course, to an equal number of clockwise and anti­clockwise helices in the crystal. The chains are reinforced by aromatic ππ stacking between the pendant C15–C20 ring and the C1–C6 ring of the indole system with the same symmetry relation as the N—H⋯O hydrogen bond: the centroid separation is 3.7565 (8) Å and the inter-plane angle is 0.00 (6)°]. There appears to be no directional inter­actions between the chains beyond van der Waals contacts.

[Figure 9]
Figure 9
Partial packing diagram for (III)[link], showing the formation of [001] chains linked by N—H⋯O hydrogen bonds (double-dashed lines) and reinforced by aromatic ππ stacking contacts. Symmetry code as in Table 3[link].

Compound (IV)[link] crystallizes in a monoclinic space group. The C(6) chain motif (Fig. 10[link]) is built up from alternating N1- and N2-mol­ecules, with simple translation in the [100] direction generating the chain from the starting pair. In this case, the chain is consolidated by C—H⋯π inter­actions (involving both the N1 and N2 mol­ecules) with the donor C—H group lying syn (i.e., C2—H2A and C23—H23, compare Fig. 4[link]) to the N—H group in the indole ring system and the acceptor ring being the pendant phenyl group attached to the carbonyl group at the 3-position of the ring system (i.e., the C10 and C31 rings). Adjacent N1- and N2-mol­ecules in the chain are `flipped' by approximately 180° with respect to each other, so the chain has approximate local 21 symmetry. The packing for (IV)[link] also features two C—H⋯O and three inter-chain C—H⋯π inter­actions, which generate a three-dimensional network.

[Figure 10]
Figure 10
Partial packing diagram for (IV)[link], showing the formation of [100] chains of alternating A and B mol­ecules linked by N—H⋯O hydrogen bonds (double-dashed lines) and reinforced by aromatic ππ stacking contacts. Symmetry code as in Table 4[link].

4. Database survey

A search of the Cambridge Structural Database (Groom & Allen, 2014[Groom, C. R. & Allen, F. H. (2014). Angew. Chem. Int. Ed. 53, 662-671.]) for indole derivatives with a phenyl substituent at the 2-position and a carbonyl group at the 3-position yielded five hits, namely: 3,5-dimethyl 2-(3,4-di­meth­oxy­phen­yl)indole-3,5-di­carboxyl­ate di­chloro­methane solvate (refcode GUXMUI; Hwu et al., 2009[Hwu, J. R., Hsu, Y. C., Josephrajan, T. & Tsay, S. C. (2009). J. Mater. Chem. 19, 3084-3090.]), 2-(3-t-butyl­dimethyl­sil­oxy-4-meth­oxy­phen­yl)-3-(3,4,5-tri­meth­oxy­benzo­yl)-6-meth­oxy­indole (IFIDEG; Hadimani et al., 2002[Hadimani, M. B., Kessler, R. J., Kautz, J. A., Ghatak, A., Shirali, A. R., O'Dell, H., Garner, C. M. & Pinney, K. G. (2002). Acta Cryst. C58, o330-o332.]), 1-(2-(2-meth­oxy­phen­yl)-1H-indol-3-yl)ethanone (MEYYOG; Coffman et al., 2013[Coffman, K. C., Palazzo, T. A., Hartley, T. P., Fettinger, J. C., Tantillo, D. J. & Kurth, M. J. (2013). Org. Lett. 15, 2062-2065.]), (5-methyl-2-(4-methyl­phen­yl)-1H-indol-3-yl)(phen­yl)methanone (MOLDIC; Shi et al., 2014[Shi, L., Xue, L., Lang, R., Xia, C. & Li, F. (2014). ChemCatChem, 6, 2560-2566.]) and 1-(6-methyl-2-phenyl-1H-indol-3-yl)ethanone (SUHWUP; Huang et al., 2014[Huang, F., Wu, P., Wang, L., Chen, J., Sun, C. & Yu, Z. (2014). J. Org. Chem. 79, 10553-10560.]). All of these structures feature C(6) chains linked by N—H⋯O hydrogen bonds, as seen in the compounds described here, which we may thus conclude is a consistent supra­molecular motif in these phases.

5. Synthesis and crystallization

To prepare (I)[link], 2-phenyl­indole (2.129 g, 11.0 mmol) was suspended in dry di­chloro­methane (45 ml) at 273 K and a 1.0 M solution of Et2AlCl in hexa­nes (16.5 ml, 16.5 mmol) was added slowly with stirring. A solution of benzoyl chloride (1.919 ml, 16.5 mmol) in dry di­chloro­methane (20 ml) was then added dropwise and the mixture was stirred at 273 K for a further 2 h. Water (30 ml) was added to quench the reaction then the solution was poured into 1.0 M HCl(aq) (100 ml) and the organic layer collected after shaking. The organic solution was washed with water (30 ml, twice) and saturated NaCl(aq) (30 ml) then dried over sodium sulfate, filtered and reduced under vacuum. Flash chromatography (1:4 EtOAc, hexa­nes) afforded 1-(2-phenyl-1H-indol-3-yl)ethanone as a colourless solid (2.257 g, 69%). Colourless slabs of (I)[link] were recrystallized from ethanol solution at room temperature. δC(101 MHz; DMSO-d6) 192.6 (Cq), 144.5 (Cq), 140.3 (Cq), 136.3 (CH), 132.0 (CH), 131.8 (Cq), 130.0 (CH), 129.5(CH), 128.9 (CH), 128.6 (Cq), 128.5 (Cq), 128.2 (CH), 123.3 (CH), 121.8 (CH), 121.0 (CH), 112.6 (CH) and 112.3 (Cq); δH(400 MHz; DMSO-d6) 12.16 (1H, br s), 7.76 (1H, d, J 7.8), 7.71 (2H, d, J 8.4), 7.58–7.56 (3H, m), 7.49 (2H, t, J 6.9), 7.38–7.17 (4H, m), 7.13 (1H, t, J 7.2) and 7.09–7.04 (1H, m); Rf 0.20 (1:4 EtOAc, hexa­nes); m.p. 495–496 K; IR (KBr, cm−1) 3393, 3060, 2968, 1707, 1551, 1208, 1116, 891 and 745; HRMS (ESI) for C21H16NO [M + H]+ calculated 298.1233, found 298.1230.

To prepare (II)[link], a suspension of 2-phenyl­indole (567 mg, 2.93 mmol) in dry di­chloro­methane (20 ml) was cooled to 273 K over ice–water before the dropwise addition of a 1.0 M solution of Et2AlCl in hexane (4.4 ml, 4.40 mmol). After stirring for 30 min, a solution of cyclo­hexyl­acetyl chloride (675 ml, 4.40 mmol) in dry di­chloro­methane (20 ml) was added dropwise and stirring was resumed over ice–water for 2 h. Water (50 ml) was added slowly and after warming to room temperature, the mixture was added to a 1.0 M solution of HCl(aq) (50 ml). The organic phase was collected, washed with water (20 ml) and saturated NaCl(aq) (20 ml), dried (sodium sulfate), filtered and evaporated under reduced pressure. Flash chromatography (1:7 EtOAc, hexa­nes then 1:5 EtOAc,hexa­nes) gave 2-cyclo­hexyl-1-(2-phenyl-1H-indol-3-yl)ethanone as a yellow solid (92 mg, 10%). Colourless rods of (II)[link] were recrystallized from ethanol solution at room temperature. δC(101 MHz; CDCl3) 198.4 (Cq), 143.5 (Cq), 135.1 (Cq), 132.9 (CH), 129.7 (CH), 129.5 (CH), 128.6 (Cq), 127.4 (Cq), 123.5 (CH), 122.5 (CH), 122.4 (CH), 115.8 (CH), 110.8 (Cq), 49.7 (CH2), 35.0 (CH2), 33.2 (CH), 26.2 (CH2) and 26.1 (CH2); δH(400 MHz; CDCl3) 8.51 (1H, br s), 8.27–8.25 (1H, m), 7.48–7.38 (5H, m), 7.32–7.28 (1H, m), 7.23–7.18 (2H, m), 2.30 (2H, d, J 6.8), 1.53–1.40 (5H, m), 1.19–0.93 (4H, m) and 0.66 (2H, q, J 10.7); Rf 0.23 (1:5 EtOAc, hexa­nes); m.p. 447 K; IR (KBr, cm−1) 3197, 3023, 2857, 1715, 1567, 1411, 1215, 1154 and 763; HRMS (ESI) for C22H24NO [M + H]+ calculated 318.1859, found 318.1855.

To prepare (III)[link], a 1.0 M solution of Et2AlCl in hexane (20 ml, 20 mmol) was added dropwise to a suspension of 2-phenyl­indole (2.536 g, 13.1 mmol) in dry di­chloro­methane (DCM) (56 ml) at 273 K. After 30 min stirring, a solution of 3,3-di­methyl­butanoyl chloride (2.75 ml, 19.8 mmol) in dry DCM (55 ml) was added slowly and stirring was resumed for 2 h. Water (30 ml) was added and the solution was shaken with 1.0 M HCl(aq) (30 ml). The organic phase was collected, washed with water (20 ml) and saturated NaCl(aq) (20 ml), dried (sodium sulfate), filtered and evaporated under vacuum. Flash chromatography (5:1 DCM, hexa­nes) yielded 3,3-dimethyl-1-(2-phenyl-1H-indol-3-yl)butan-1-one as a cream-coloured solid (1.909 g, 50%). Colourless blocks of (III)[link] were recrystallized from ethanol solution at room temperature. δC(101 MHz; CDCl3) 199.1(Cq), 142.9 (Cq), 135.2 (Cq), 132.9 (CH), 129.7 (CH), 129.5 (CH), 128.8 (Cq), 127.4 (Cq), 123.6 (CH), 122.4 (CH), 122.3 (CH), 117.3 (CH), 110.7 (Cq), 53.8 (CH2), 31.9 (Cq) and 29.9 (CH3); δH(400 MHz; CDCl3) 8.37 (1H, br s), 8.23–8.21 (1H, m), 7.48–7.19 (8H, m), 2.34 (2H, s) and 0.77 (9H, s); Rf 0.31 (5:1 DCM, hexa­nes); m.p. 441–443 K; IR (KBr, cm−1) 3186, 2998, 2954, 1710, 1454, 1411, 1202, 1150, 939 and 736; HRMS (ESI) for C20H22NO [M + H]+ calculated, 292.1702, found, 292.1697.

To prepare (IV)[link], 2-phenyl­indole (2.129 g, 11.0 mmol) was suspended in dry DCM (45 ml) at 273 K and a 1.0 M solution of Et2AlCl in hexa­nes (16.5 ml, 16.5 mmol) was added slowly with stirring. A solution of benzoyl chloride (1.919 ml, 16.5 mmol) in dry DCM (20 ml) was then added dropwise and the mixture was stirred at 273 K for a further 2 h. Water (30 ml) was added to quench the reaction then the solution was poured into 1.0 M HCl(aq) (100 ml) and the organic layer collected after shaking. The DCM solution was washed with water (30 ml, twice) and saturated NaCl(aq) (30 ml) then dried (sodium sulfate), filtered and reduced under vacuum. Flash chromatography (1:4 EtOAc, hexa­nes) afforded 3-benzoyl-2-phenyl-1H-indole as a colourless solid (2.257 g, 69%). Colourless blocks and slabs of (IV)[link] were recrystallized from ethanol solution at room temperature. δC(101 MHz; DMSO-d6) 192.6 (Cq), 144.5 (Cq), 140.3 (Cq), 136.3 (CH), 132.0 (CH), 131.8 (Cq), 130.0 (CH), 129.5 (CH), 128.9 (CH), 128.6 (Cq), 128.5 (Cq), 128.2 (CH), 123.3 (CH), 121.8 (CH), 121.0 (CH), 112.6 (CH) and 112.3 (Cq); δH(400 MHz; DMSO-d6) 12.16 (1H, br s), 7.76 (1H, d, J 7.8), 7.71 (2H, d, J 8.4), 7.58–7.56 (3H, m), 7.49 (2H, t, J 6.9), 7.38–7.17 (4H, m), 7.13 (1H, t, J 7.2) and 7.09–7.04 (1H, m); Rf 0.20 (1:4 EtOAc, hexa­nes); m.p. 495–496 K; IR (KBr, cm−1) 3393, 3060, 2968, 1707, 1551, 1208, 1116, 891 and 745; HRMS (ESI) for C21H16NO [M + H]+ calculated 298.1233, found 298.1230.

6. Refinement

Crystal data, data collection and structure refinement details for (I)–(IV) are summarized in Table 5[link]. The N-bound H atoms were located in difference maps and their positions freely refined [for (IV)[link] they were refined as riding atoms in their as-found relative positions]. The C-bound H atoms were geometrically placed (C—H = 0.93–0.98 Å) and refined as riding atoms. The constraint Uiso(H) = 1.2Ueq(carrier) or 1.5Ueq(methyl carrier) was applied in all cases. The methyl H atoms (if any) were allowed to rotate, but not to tip, to best fit the electron density. Compound (II)[link] crystallizes in space group P212121 but the absolute structure was indeterminate in the present experiment. The crystal of (III)[link] was found to contain highly disordered solvent mol­ecules. Attempts to model the disorder were ineffective and the contribution to the scattering was removed with the SQUEEZE (Spek, 2015[Spek, A. L. (2015). Acta Cryst. C71, 9-18.]) option in PLATON (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]), which revealed a solvent-accessible volume of 244.3 Å3 per unit cell and 19 `solvent' electrons per unit cell. The stated formula, mol­ecular mass, density, etc. for (III)[link] in Table 5[link] do not take the solvent into account.

Table 5
Experimental details

  (I) (II) (III) (IV)
Crystal data
Chemical formula C16H13NO C22H23NO C20H21NO C21H15NO
Mr 235.27 317.41 291.38 297.34
Crystal system, space group Triclinic, P[\overline{1}] Orthorhombic, P212121 Trigonal, R[\overline{3}] Monoclinic, P21/c
Temperature (K) 100 100 100 100
a, b, c (Å) 7.4136 (5), 7.5070 (5), 10.9519 (8) 7.3587 (5), 13.225 (1), 17.5445 (13) 23.3305 (16), 23.3305 (16), 15.3681 (11) 14.5065 (10), 11.7911 (9), 18.6961 (13)
α, β, γ (°) 101.274 (7), 92.218 (6), 97.893 (7) 90, 90, 90 90, 90, 120 90, 107.782 (2), 90
V3) 590.74 (7) 1707.4 (2) 7244.3 (9) 3045.1 (4)
Z 2 4 18 8
Radiation type Mo Kα Mo Kα Mo Kα Mo Kα
μ (mm−1) 0.08 0.08 0.07 0.08
Crystal size (mm) 0.40 × 0.14 × 0.05 0.60 × 0.16 × 0.14 0.66 × 0.60 × 0.24 0.22 × 0.03 × 0.01
 
Data collection
Diffractometer Rigaku Mercury CCD Rigaku Mercury CCD Rigaku Mercury CCD Rigaku Mercury CCD
No. of measured, independent and observed [I > 2σ(I)] reflections 7753, 2703, 2432 8189, 3490, 2802 32188, 3690, 3070 20680, 6949, 4461
Rint 0.033 0.045 0.037 0.063
(sin θ/λ)max−1) 0.650 0.650 0.649 0.649
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.040, 0.114, 1.07 0.051, 0.100, 1.21 0.036, 0.092, 1.08 0.076, 0.215, 1.05
No. of reflections 2703 3490 3690 6949
No. of parameters 167 221 205 415
H-atom treatment H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.37, −0.19 0.23, −0.22 0.29, −0.18 0.58, −0.23
Computer programs: CrystalClear (Rigaku, 2012[Rigaku (2012). CrystalClear. Rigaku Corporation, Tokyo, Japan.]), SHELXS97 and SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]), ORTEP-3 for Windows (Farrugia, 2012[Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849-854.]) and publCIF (Westrip, 2010[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]).

Supporting information


Chemical context top

Indole derivatives are widely studied due to their utility in many areas, including in the dye, plastics, agriculture and perfumery fields and as vitamin supplements and flavour enhancers (Barden, 2011). However, it is in the pharmaceutical field that most inter­est has been shown. Indoles, both naturally occurring and man-made, have been found to have activity as anti­hypertensive drugs, anti­depressants, anti­psychotic agents, anti-emetics, analgesics, anti-asthmatics, anti­virals, beta blockers, inhibitors of RNA Polymerase-11, agonists for the cannabinoid receptor, non-nucleoside reverse transcriptase inhibitors, opioid agonists, sexual dysfunctional agents, etc. (França et al., 2014; Kaushik et al., 2013; Biswal et al., 2012; Sharma et al., 2010).

As part of our ongoing synthetic and biological (Kerr, 2013) and structural studies in this area (Kerr et al., 2015) we report herein the crystal structures of four indole derivatives, namely: 1-(2-phenyl-1H-indol-3-yl)ethanone, C16H13NO, (I), 2-cyclo­hexyl-1-(2-phenyl-1H-indol-3-yl)ethanone, C22H23NO, (II), 3,3-di­methyl-1-(2-phenyl-1H-indol-3-yl)butan-1-one, C20H21NO, (III), and 3-benzoyl-2-phenyl-1H-indole, C21H15NO, (IV).

As we discuss below, each structure features C(6) N—H···O hydrogen-bonded chains but with different crystal symmetries and weak reinforcing effects (C—H···O and C—H···π inter­actions and aromatic ππ stacking).

Structural commentary top

The molecular structure of (I) is illustrated in Fig. 1. The dihedral angles between the mean plane of the indole ring system (r.m.s. deviation = 0.018 Å) and the C9/C10/O1 grouping and the C11-benzene ring are 8.35 (4) and 65.44 (4)°, respectively. The C6—C7—C9 and C8—C7—C9 bond angles are 124.57 (9) and 129.04 (10)°, respectively. O1 is syn to H5 [C6—C7—C9—O1 = -8.14 (16)°] and a short intra­molecular contact occurs (H5···O1 = 2.54 Å), although we do not regard this as a bond. The C8—C7—C9—C10 torsion angle of -6.53 (16)° shows that C8 and C10 are almost eclipsed.

The molecular structure of (II) is shown in Fig. 2. The cyclo­hexyl ring adopts a normal chair conformation with the exocyclic C—C bond in an equatorial orientation. The dihedral angles between the indole ring system (r.m.s. deviation = 0.012 Å) and the C9/C10/O1 grouping and the C11-benzene ring are 21.17 (14) and 68.58 (8)°, respectively. The C6—C7—C9 and C8—C7—C9 bond angles are 124.3 (2) and 129.3 (2)°, respectively and the C8—C7—C9—C10 torsion angle is 16.2 (4)°. This is significantly larger than the equivalent value for (I), possibly due to steric inter­actions between the pendant ring systems: the twist about the C7—C9 bond in (II) is in the opposite sense to that in (I) [C6—C7—C9—O1 = 16.4 (3)°].

Fig. 3 shows the molecular structure of (III). The indole ring system (r.m.s. deviation = 0.007 Å) subtends dihedral angles of 15.60 (8) and 70.07 (3)° with the C9/C10/O1 grouping and the C15 benzene ring, respectively. The C7—C9—C10—C11 torsion angle is 137.54 (9)°. and the C6—C7—C9 and C8—C7—C9 bond angles are 124.3 (2) and 129.3 (2)°, respectively. The C8—C7—C9—C10 torsion angle is -14.06 (15)°. The C6—C7—C9—O1 torsion angle of –13.96 (14)° shows that the C=O bond is slightly twisted away from the indole plane.

Compound (IV) crystallizes with two molecules in the asymmetric unit, as shown in Fig. 4. The molecules have similar but not identical conformations, as indicated by the r.m.s. overlay fit of 0.102 Å for the 23 non-hydrogen atoms. The main differences are a slightly different twist of the benzene ring at the 2-position and the fact that atoms C10 and C31 deviate slightly from the indole ring plane, but in opposite directions. This is reflected in the metrical data for the individual molecules: in the N1-species, the indole ring system (r.m.s. deviation = 0.009 Å) subtends dihedral angles of 7.32 (15), 64.66 (7), and 54.57 (7)° with the C9/C10/O1 group, the C10-ring and the C16-ring, respectively. Equivalent data for the N2-molecule (r.m.s. deviation for the indole ring system = 0.009 Å) are 9.76 (13) (C30/C31/O2), 60.92 (7) (C31-ring) and 56.97 (7)° (C37-ring). In the N1-molecule, the C6—C7—C9 and C8—C7—C9 bond angles are 123.5 (2) and 130.5 (2)°, respectively and the C8—C7—C9—C10 torsion angle is 7.1 (4)°. Equivalent data for the N2-molecule are C27—C28—C30 [124.0 (2)°], C29—C28—C30 [130.2 (3)°] and C29—C28—C30—C31 [–9.7 (4)°].

Supra­molecular features top

In each structure, as might be expected, the dominant supra­molecular motif is an N—H···OC hydrogen bond, which generates a C(6) chain in every case. However, it is notable that the same chain motif is reinforced by different weak inter­actions in these structures, as described below and listed in Tables 1–4, for (I)–(IV), respectively.

In the triclinic crystal of (I), the N1—H1···O1i [symmetry code: (i) x – 1, y, z] hydrogen bond links the molecules into [100] chains with the aforementioned C(6) chain motif in which adjacent molecules are related by translational symmetry. In addition, a C12—H12···O1ii [symmetry code: (ii) 1 – x, 1 – y, 1 – z] inter­action is seen. By itself, this generates inversion dimers (Fig. 5) with an R22(14) motif: the twisting of the C11 ring relative to the indole skeleton appears to optimize the geometry for this inter­action. Taken together, the N—H···O and C—H···O bonds in (I) lead to double chains propagating in [100] (Fig. 6). Inversion symmetry means that the sense of the N—H···O bonds are opposed in the two chains. Packing between the chains does not feature any directional inter­actions beyond typical van der Waals contacts and there is no aromatic ππ stacking in (I).

In the orthorhombic crystal of (II), the molecules are linked by N1—H1—O2i [symmetry code: (i) x + 1, y, z] hydrogen bonds into [100] chains (Fig. 7) characterized by a C(6) motif: adjacent molecules are again related by simple unit-cell translation. There is no reinforcement of the chain bonding in this case, but a pair of weak C—H···π inter­actions occur, which arise from adjacent C—H groupings of the pendant C17–C22 benzene ring to an adjacent indole ring (Fig. 8), and result in [010] chains. Taken together, the N—H···O and C—H···π bonds in (II) lead to (001) sheets.

The extended structure in (III) conforms to rhombohedral (trigonal) crystal symmetry. Once again, adjacent molecules are linked into C(6) chains by N1—H1···O2i [symmetry code: (i) 1/3 – x + y, 2/3 – x, z – 1/3] and symmetry-equivalent hydrogen bonds. The chain propagates in the [001] direction (Fig. 9) and the chain that incorporates the asymmetric molecule describes an anti­clockwise helix, when viewed from above, about the 31 symmetry element at (1/3, 1/3, z). The centrosymmetric space group leads, of course, to an equal number of clockwise and anti­clockwise helices in the crystal. The chains are reinforced by aromatic ππ stacking between the pendant C15–C20 ring and the C1–C6 ring of the indole system with the same symmetry relation as the N—H···O hydrogen bond: the centroid separation is 3.7565 (8) Å and the inter-plane angle is 0.00 (6)°]. There appears to be no directional inter­actions between the chains beyond van der Waals contacts.

Compound (IV) crystallizes in a monoclinic space group. The C(6) chain motif (Fig. 10) is built up from alternating N1- and N2-molecules, with simple translation in the [100] direction generating the chain from the starting pair. In this case, the chain is consolidated by C—H···π inter­actions (involving both the N1 and N2 molecules) with the donor C—H group lying syn (i.e., C2—H2A and C23—H23, compare Fig. 4) to the N—H group in the indole ring system and the acceptor ring being the pendant phenyl group attached to the carbonyl group at the 3-position of the ring system (i.e., the C10 and C31 rings). Adjacent N1- and N2-molecules in the chain are `flipped' by approximately 180° with respect to each other, so the chain has approximate local 21 symmetry. The packing for (IV) also features two C—H···O and three inter-chain C—H···π inter­actions, which generate a three-dimensional network.

Database survey top

\ A search of the Cambridge Structural Database (Groom & Allen, 2014) for indole derivatives with a phenyl substituent at the 2-position and a carbonyl group at the 3-position yielded five hits, namely: 3,5-di­methyl 2-(3,4-di­meth­oxy­phenyl)­indole-3,5-di­carboxyl­ate di­chloro­methane solvate (refcode GUXMUI; Hwu et al., 2009), 2-(3-t-butyl­dimethyl­sil­oxy-4-meth­oxy­phenyl)-3-(3,4,5-\ tri­meth­oxy­benzoyl)-6-meth­oxy­indole (IFIDEG; Hadimani et al., 2002), 1-(2-(2-meth­oxy­phenyl)-1H-indol-3-yl)ethanone (MEYYOG; Coffman et al., 2013), (5-methyl-2-(4-methyl­phenyl)-1H-indol-3-yl)(phenyl)­methanone (MOLDIC; Shi et al., 2014) and 1-(6-methyl-2-phenyl-1H-indol-3-yl)ethanone (SUHWUP; Huang et al., 2014). All of these structures feature C(6) chains linked by N—H···O hydrogen bonds, as seen in the compounds described here, which we may thus conclude is a consistent supra­molecular motif in these phases.

Synthesis and crystallization top

To prepare (I), 2-phenyl­indole (2.129 g, 11.0 mmol) was suspended in dry di­chloro­methane (45 ml) at 273 K and a 1.0 M solution of Et2AlCl in hexanes (16.5 ml, 16.5 mmol) was added slowly with stirring. A solution of benzoyl chloride (1.919 ml, 16.5 mmol) in dry di­chloro­methane (20 ml) was then added dropwise and the mixture was stirred at 273 K for a further 2 h. Water (30 ml) was added to quench the reaction then the solution was poured into 1.0 M HCl(aq) (100 ml) and the organic layer collected after shaking. The organic solution was washed with water (30 ml, twice) and saturated NaCl(aq) (30 ml) then dried over sodium sulfate, filtered and reduced under vacuum. Flash chromatography (1:4 EtOAc, hexanes) afforded 1-(2-phenyl-1H-indol-3-yl)ethanone as a colourless solid (2.257 g, 69%). Colourless slabs of (I) were recrystallized from ethanol solution at room temperature. δC(101 MHz; DMSO-d6) 192.6 (Cq), 144.5 (Cq), 140.3 (Cq), 136.3 (CH), 132.0 (CH), 131.8 (Cq), 130.0 (CH), 129.5(CH), 128.9 (CH), 128.6 (Cq), 128.5 (Cq), 128.2 (CH), 123.3 (CH), 121.8 (CH), 121.0 (CH), 112.6 (CH) and 112.3 (Cq); δH(400 MHz; DMSO-d6) 12.16 (1H, br s), 7.76 (1H, d, J 7.8), 7.71 (2H, d, J 8.4), 7.58–7.56 (3H, m), 7.49 (2H, t, J 6.9), 7.38–7.17 (4H, m), 7.13 (1H, t, J 7.2) and 7.09–7.04 (1H, m); Rf 0.20 (1:4 EtOAc, hexanes); m.p. 495–496 K; IR (KBr, cm-1) 3393, 3060, 2968, 1707, 1551, 1208, 1116, 891 and 745; HRMS (ESI) for C21H16NO [M + H]+ calculated 298.1233, found 298.1230.

To prepare (II), a suspension of 2-phenyl­indole (567 mg, 2.93 mmol) in dry di­chloro­methane (20 ml) was cooled to 273 K over ice–water before the dropwise addition of a 1.0 M solution of Et2AlCl in hexane (4.4 ml, 4.40 mmol). After stirring for 30 min, a solution of cyclo­hexyl­acetyl chloride (675 ml, 4.40 mmol) in dry di­chloro­methane (20 ml) was added dropwise and stirring was resumed over ice–water for 2 h. Water (50 ml) was added slowly and after warming to room temperature, the mixture was added to a 1.0 M solution of HCl(aq) (50 ml). The organic phase was collected, washed with water (20 ml) and saturated NaCl(aq) (20 ml), dried (sodium sulfate), filtered and evaporated under reduced pressure. Flash chromatography (1:7 EtOAc, hexanes then 1:5 EtOAc,hexanes) gave 2-cyclo­hexyl-1-(2-phenyl-1H-indol-3-yl)ethanone as a yellow solid (92 mg, 10%). Colourless rods of (II) were recrystallized from ethanol solution at room temperature. δC(101 MHz; CDCl3) 198.4 (Cq), 143.5 (Cq), 135.1 (Cq), 132.9 (CH), 129.7 (CH), 129.5 (CH), 128.6 (Cq), 127.4 (Cq), 123.5 (CH), 122.5 (CH), 122.4 (CH), 115.8 (CH), 110.8 (Cq), 49.7 (CH2), 35.0 (CH2), 33.2 (CH), 26.2 (CH2) and 26.1 (CH2); δH(400 MHz; CDCl3) 8.51 (1H, br s), 8.27–8.25 (1H, m), 7.48–7.38 (5H, m), 7.32–7.28 (1H, m), 7.23–7.18 (2H, m), 2.30 (2H, d, J 6.8), 1.53–1.40 (5H, m), 1.19–0.93 (4H, m) and 0.66 (2H, q, J 10.7); Rf 0.23 (1:5 EtOAc, hexanes); m.p. 447 K; IR (KBr, cm-1) 3197, 3023, 2857, 1715, 1567, 1411, 1215, 1154 and 763; HRMS (ESI) for C22H24NO [M + H]+ calculated 318.1859, found 318.1855.

To prepare (III), a 1.0 M solution of Et2AlCl in hexane (20 ml, 20 mmol) was added dropwise to a suspension of 2-phenyl­indole (2.536 g, 13.1 mmol) in dry di­chloro­methane (DCM) (56 ml) at 273 K. After 30 min stirring, a solution of 3,3-di­methyl­butanoyl chloride (2.75 ml, 19.8 mmol) in dry DCM (55 ml) was added slowly and stirring was resumed for 2 h. Water (30 ml) was added and the solution was shaken with 1.0 M HCl(aq) (30 ml). The organic phase was collected, washed with water (20 ml) and saturated NaCl(aq) (20 ml), dried (sodium sulfate), filtered and evaporated under vacuum. Flash chromatography (5:1 DCM, hexanes) yielded 3,3-di­methyl-1-(2-phenyl-1H-indol-3-yl)butan-1-one as a cream-coloured solid (1.909 g, 50%). Colourless blocks of (III) were recrystallized from ethanol solution at room temperature. δC(101 MHz; CDCl3) 199.1(Cq), 142.9 (Cq), 135.2 (Cq), 132.9 (CH), 129.7 (CH), 129.5 (CH), 128.8 (Cq), 127.4 (Cq), 123.6 (CH), 122.4 (CH), 122.3 (CH), 117.3 (CH), 110.7 (Cq), 53.8 (CH2), 31.9 (Cq) and 29.9 (CH3); δH(400 MHz; CDCl3) 8.37 (1H, br s), 8.23–8.21 (1H, m), 7.48–7.19 (8H, m), 2.34 (2H, s) and 0.77 (9H, s); Rf 0.31 (5:1 DCM, hexanes); m.p. 441–443 K; IR (KBr, cm-1) 3186, 2998, 2954, 1710, 1454, 1411, 1202, 1150, 939 and 736; HRMS (ESI) for C20H22NO [M + H]+ calculated, 292.1702, found, 292.1697.

To prepare (IV), 2-phenyl­indole (2.129 g, 11.0 mmol) was suspended in dry DCM (45 ml) at 273 K and a 1.0 M solution of Et2AlCl in hexanes (16.5 ml, 16.5 mmol) was added slowly with stirring. A solution of benzoyl chloride (1.919 ml, 16.5 mmol) in dry DCM (20 ml) was then added dropwise and the mixture was stirred at 273 K for a further 2 h. Water (30 ml) was added to quench the reaction then the solution was poured into 1.0 M HCl(aq) (100 ml) and the organic layer collected after shaking. The DCM solution was washed with water (30 ml, twice) and saturated NaCl(aq) (30 ml) then dried (sodium sulfate), filtered and reduced under vacuum. Flash chromatography (1:4 EtOAc, hexanes) afforded 3-benzoyl-2-phenyl-1H-indole as a colourless solid (2.257 g, 69%). Colourless blocks and slabs of (IV) were recrystallized from ethanol solution at room temperature. δC(101 MHz; DMSO-d6) 192.6 (Cq), 144.5 (Cq), 140.3 (Cq), 136.3 (CH), 132.0 (CH), 131.8 (Cq), 130.0 (CH), 129.5 (CH), 128.9 (CH), 128.6 (Cq), 128.5 (Cq), 128.2 (CH), 123.3 (CH), 121.8 (CH), 121.0 (CH), 112.6 (CH) and 112.3 (Cq); δH(400 MHz; DMSO-d6) 12.16 (1H, br s), 7.76 (1H, d, J 7.8), 7.71 (2H, d, J 8.4), 7.58–7.56 (3H, m), 7.49 (2H, t, J 6.9), 7.38–7.17 (4H, m), 7.13 (1H, t, J 7.2) and 7.09–7.04 (1H, m); Rf 0.20 (1:4 EtOAc, hexanes); m.p. 495–496 K; IR (KBr, cm-1) 3393, 3060, 2968, 1707, 1551, 1208, 1116, 891 and 745; HRMS (ESI) for C21H16NO [M + H]+ calculated 298.1233, found 298.1230.

Refinement top

Crystal data, data collection and structure refinement details for (I)–(IV) are summarized in Table 5. The N-bound H atoms were located in difference maps and their positions freely refined [for (IV) they were refined as riding atoms in their as-found relative positions]. The C-bound H atoms were geometrically placed (C—H = 0.93–0.98 Å) and refined as riding atoms. The constraint Uiso(H) = 1.2Ueq(carrier) or 1.5Ueq(methyl carrier) was applied in all cases. The methyl H atoms (if any) were allowed to rotate, but not to tip, to best fit the electron density. Compound (II) crystallizes in space group P212121 but the absolute structure was indeterminate in the present experiment. The crystal of (III) was found to contain highly disordered solvent molecules. Attempts to model the disorder were ineffective and the contribution to the scattering was removed with the SQUEEZE (Spek, 2015) option in PLATON (Spek, 2009), which revealed a solvent-accessible volume of 244.3 Å3 per unit cell and 19 `solvent' electrons per unit cell. The stated formula, molecular mass, density, etc. for (III) in Table 2 do not take the solvent into account.

Structure description top

Indole derivatives are widely studied due to their utility in many areas, including in the dye, plastics, agriculture and perfumery fields and as vitamin supplements and flavour enhancers (Barden, 2011). However, it is in the pharmaceutical field that most inter­est has been shown. Indoles, both naturally occurring and man-made, have been found to have activity as anti­hypertensive drugs, anti­depressants, anti­psychotic agents, anti-emetics, analgesics, anti-asthmatics, anti­virals, beta blockers, inhibitors of RNA Polymerase-11, agonists for the cannabinoid receptor, non-nucleoside reverse transcriptase inhibitors, opioid agonists, sexual dysfunctional agents, etc. (França et al., 2014; Kaushik et al., 2013; Biswal et al., 2012; Sharma et al., 2010).

As part of our ongoing synthetic and biological (Kerr, 2013) and structural studies in this area (Kerr et al., 2015) we report herein the crystal structures of four indole derivatives, namely: 1-(2-phenyl-1H-indol-3-yl)ethanone, C16H13NO, (I), 2-cyclo­hexyl-1-(2-phenyl-1H-indol-3-yl)ethanone, C22H23NO, (II), 3,3-di­methyl-1-(2-phenyl-1H-indol-3-yl)butan-1-one, C20H21NO, (III), and 3-benzoyl-2-phenyl-1H-indole, C21H15NO, (IV).

As we discuss below, each structure features C(6) N—H···O hydrogen-bonded chains but with different crystal symmetries and weak reinforcing effects (C—H···O and C—H···π inter­actions and aromatic ππ stacking).

The molecular structure of (I) is illustrated in Fig. 1. The dihedral angles between the mean plane of the indole ring system (r.m.s. deviation = 0.018 Å) and the C9/C10/O1 grouping and the C11-benzene ring are 8.35 (4) and 65.44 (4)°, respectively. The C6—C7—C9 and C8—C7—C9 bond angles are 124.57 (9) and 129.04 (10)°, respectively. O1 is syn to H5 [C6—C7—C9—O1 = -8.14 (16)°] and a short intra­molecular contact occurs (H5···O1 = 2.54 Å), although we do not regard this as a bond. The C8—C7—C9—C10 torsion angle of -6.53 (16)° shows that C8 and C10 are almost eclipsed.

The molecular structure of (II) is shown in Fig. 2. The cyclo­hexyl ring adopts a normal chair conformation with the exocyclic C—C bond in an equatorial orientation. The dihedral angles between the indole ring system (r.m.s. deviation = 0.012 Å) and the C9/C10/O1 grouping and the C11-benzene ring are 21.17 (14) and 68.58 (8)°, respectively. The C6—C7—C9 and C8—C7—C9 bond angles are 124.3 (2) and 129.3 (2)°, respectively and the C8—C7—C9—C10 torsion angle is 16.2 (4)°. This is significantly larger than the equivalent value for (I), possibly due to steric inter­actions between the pendant ring systems: the twist about the C7—C9 bond in (II) is in the opposite sense to that in (I) [C6—C7—C9—O1 = 16.4 (3)°].

Fig. 3 shows the molecular structure of (III). The indole ring system (r.m.s. deviation = 0.007 Å) subtends dihedral angles of 15.60 (8) and 70.07 (3)° with the C9/C10/O1 grouping and the C15 benzene ring, respectively. The C7—C9—C10—C11 torsion angle is 137.54 (9)°. and the C6—C7—C9 and C8—C7—C9 bond angles are 124.3 (2) and 129.3 (2)°, respectively. The C8—C7—C9—C10 torsion angle is -14.06 (15)°. The C6—C7—C9—O1 torsion angle of –13.96 (14)° shows that the C=O bond is slightly twisted away from the indole plane.

Compound (IV) crystallizes with two molecules in the asymmetric unit, as shown in Fig. 4. The molecules have similar but not identical conformations, as indicated by the r.m.s. overlay fit of 0.102 Å for the 23 non-hydrogen atoms. The main differences are a slightly different twist of the benzene ring at the 2-position and the fact that atoms C10 and C31 deviate slightly from the indole ring plane, but in opposite directions. This is reflected in the metrical data for the individual molecules: in the N1-species, the indole ring system (r.m.s. deviation = 0.009 Å) subtends dihedral angles of 7.32 (15), 64.66 (7), and 54.57 (7)° with the C9/C10/O1 group, the C10-ring and the C16-ring, respectively. Equivalent data for the N2-molecule (r.m.s. deviation for the indole ring system = 0.009 Å) are 9.76 (13) (C30/C31/O2), 60.92 (7) (C31-ring) and 56.97 (7)° (C37-ring). In the N1-molecule, the C6—C7—C9 and C8—C7—C9 bond angles are 123.5 (2) and 130.5 (2)°, respectively and the C8—C7—C9—C10 torsion angle is 7.1 (4)°. Equivalent data for the N2-molecule are C27—C28—C30 [124.0 (2)°], C29—C28—C30 [130.2 (3)°] and C29—C28—C30—C31 [–9.7 (4)°].

In each structure, as might be expected, the dominant supra­molecular motif is an N—H···OC hydrogen bond, which generates a C(6) chain in every case. However, it is notable that the same chain motif is reinforced by different weak inter­actions in these structures, as described below and listed in Tables 1–4, for (I)–(IV), respectively.

In the triclinic crystal of (I), the N1—H1···O1i [symmetry code: (i) x – 1, y, z] hydrogen bond links the molecules into [100] chains with the aforementioned C(6) chain motif in which adjacent molecules are related by translational symmetry. In addition, a C12—H12···O1ii [symmetry code: (ii) 1 – x, 1 – y, 1 – z] inter­action is seen. By itself, this generates inversion dimers (Fig. 5) with an R22(14) motif: the twisting of the C11 ring relative to the indole skeleton appears to optimize the geometry for this inter­action. Taken together, the N—H···O and C—H···O bonds in (I) lead to double chains propagating in [100] (Fig. 6). Inversion symmetry means that the sense of the N—H···O bonds are opposed in the two chains. Packing between the chains does not feature any directional inter­actions beyond typical van der Waals contacts and there is no aromatic ππ stacking in (I).

In the orthorhombic crystal of (II), the molecules are linked by N1—H1—O2i [symmetry code: (i) x + 1, y, z] hydrogen bonds into [100] chains (Fig. 7) characterized by a C(6) motif: adjacent molecules are again related by simple unit-cell translation. There is no reinforcement of the chain bonding in this case, but a pair of weak C—H···π inter­actions occur, which arise from adjacent C—H groupings of the pendant C17–C22 benzene ring to an adjacent indole ring (Fig. 8), and result in [010] chains. Taken together, the N—H···O and C—H···π bonds in (II) lead to (001) sheets.

The extended structure in (III) conforms to rhombohedral (trigonal) crystal symmetry. Once again, adjacent molecules are linked into C(6) chains by N1—H1···O2i [symmetry code: (i) 1/3 – x + y, 2/3 – x, z – 1/3] and symmetry-equivalent hydrogen bonds. The chain propagates in the [001] direction (Fig. 9) and the chain that incorporates the asymmetric molecule describes an anti­clockwise helix, when viewed from above, about the 31 symmetry element at (1/3, 1/3, z). The centrosymmetric space group leads, of course, to an equal number of clockwise and anti­clockwise helices in the crystal. The chains are reinforced by aromatic ππ stacking between the pendant C15–C20 ring and the C1–C6 ring of the indole system with the same symmetry relation as the N—H···O hydrogen bond: the centroid separation is 3.7565 (8) Å and the inter-plane angle is 0.00 (6)°]. There appears to be no directional inter­actions between the chains beyond van der Waals contacts.

Compound (IV) crystallizes in a monoclinic space group. The C(6) chain motif (Fig. 10) is built up from alternating N1- and N2-molecules, with simple translation in the [100] direction generating the chain from the starting pair. In this case, the chain is consolidated by C—H···π inter­actions (involving both the N1 and N2 molecules) with the donor C—H group lying syn (i.e., C2—H2A and C23—H23, compare Fig. 4) to the N—H group in the indole ring system and the acceptor ring being the pendant phenyl group attached to the carbonyl group at the 3-position of the ring system (i.e., the C10 and C31 rings). Adjacent N1- and N2-molecules in the chain are `flipped' by approximately 180° with respect to each other, so the chain has approximate local 21 symmetry. The packing for (IV) also features two C—H···O and three inter-chain C—H···π inter­actions, which generate a three-dimensional network.

\ A search of the Cambridge Structural Database (Groom & Allen, 2014) for indole derivatives with a phenyl substituent at the 2-position and a carbonyl group at the 3-position yielded five hits, namely: 3,5-di­methyl 2-(3,4-di­meth­oxy­phenyl)­indole-3,5-di­carboxyl­ate di­chloro­methane solvate (refcode GUXMUI; Hwu et al., 2009), 2-(3-t-butyl­dimethyl­sil­oxy-4-meth­oxy­phenyl)-3-(3,4,5-\ tri­meth­oxy­benzoyl)-6-meth­oxy­indole (IFIDEG; Hadimani et al., 2002), 1-(2-(2-meth­oxy­phenyl)-1H-indol-3-yl)ethanone (MEYYOG; Coffman et al., 2013), (5-methyl-2-(4-methyl­phenyl)-1H-indol-3-yl)(phenyl)­methanone (MOLDIC; Shi et al., 2014) and 1-(6-methyl-2-phenyl-1H-indol-3-yl)ethanone (SUHWUP; Huang et al., 2014). All of these structures feature C(6) chains linked by N—H···O hydrogen bonds, as seen in the compounds described here, which we may thus conclude is a consistent supra­molecular motif in these phases.

Synthesis and crystallization top

To prepare (I), 2-phenyl­indole (2.129 g, 11.0 mmol) was suspended in dry di­chloro­methane (45 ml) at 273 K and a 1.0 M solution of Et2AlCl in hexanes (16.5 ml, 16.5 mmol) was added slowly with stirring. A solution of benzoyl chloride (1.919 ml, 16.5 mmol) in dry di­chloro­methane (20 ml) was then added dropwise and the mixture was stirred at 273 K for a further 2 h. Water (30 ml) was added to quench the reaction then the solution was poured into 1.0 M HCl(aq) (100 ml) and the organic layer collected after shaking. The organic solution was washed with water (30 ml, twice) and saturated NaCl(aq) (30 ml) then dried over sodium sulfate, filtered and reduced under vacuum. Flash chromatography (1:4 EtOAc, hexanes) afforded 1-(2-phenyl-1H-indol-3-yl)ethanone as a colourless solid (2.257 g, 69%). Colourless slabs of (I) were recrystallized from ethanol solution at room temperature. δC(101 MHz; DMSO-d6) 192.6 (Cq), 144.5 (Cq), 140.3 (Cq), 136.3 (CH), 132.0 (CH), 131.8 (Cq), 130.0 (CH), 129.5(CH), 128.9 (CH), 128.6 (Cq), 128.5 (Cq), 128.2 (CH), 123.3 (CH), 121.8 (CH), 121.0 (CH), 112.6 (CH) and 112.3 (Cq); δH(400 MHz; DMSO-d6) 12.16 (1H, br s), 7.76 (1H, d, J 7.8), 7.71 (2H, d, J 8.4), 7.58–7.56 (3H, m), 7.49 (2H, t, J 6.9), 7.38–7.17 (4H, m), 7.13 (1H, t, J 7.2) and 7.09–7.04 (1H, m); Rf 0.20 (1:4 EtOAc, hexanes); m.p. 495–496 K; IR (KBr, cm-1) 3393, 3060, 2968, 1707, 1551, 1208, 1116, 891 and 745; HRMS (ESI) for C21H16NO [M + H]+ calculated 298.1233, found 298.1230.

To prepare (II), a suspension of 2-phenyl­indole (567 mg, 2.93 mmol) in dry di­chloro­methane (20 ml) was cooled to 273 K over ice–water before the dropwise addition of a 1.0 M solution of Et2AlCl in hexane (4.4 ml, 4.40 mmol). After stirring for 30 min, a solution of cyclo­hexyl­acetyl chloride (675 ml, 4.40 mmol) in dry di­chloro­methane (20 ml) was added dropwise and stirring was resumed over ice–water for 2 h. Water (50 ml) was added slowly and after warming to room temperature, the mixture was added to a 1.0 M solution of HCl(aq) (50 ml). The organic phase was collected, washed with water (20 ml) and saturated NaCl(aq) (20 ml), dried (sodium sulfate), filtered and evaporated under reduced pressure. Flash chromatography (1:7 EtOAc, hexanes then 1:5 EtOAc,hexanes) gave 2-cyclo­hexyl-1-(2-phenyl-1H-indol-3-yl)ethanone as a yellow solid (92 mg, 10%). Colourless rods of (II) were recrystallized from ethanol solution at room temperature. δC(101 MHz; CDCl3) 198.4 (Cq), 143.5 (Cq), 135.1 (Cq), 132.9 (CH), 129.7 (CH), 129.5 (CH), 128.6 (Cq), 127.4 (Cq), 123.5 (CH), 122.5 (CH), 122.4 (CH), 115.8 (CH), 110.8 (Cq), 49.7 (CH2), 35.0 (CH2), 33.2 (CH), 26.2 (CH2) and 26.1 (CH2); δH(400 MHz; CDCl3) 8.51 (1H, br s), 8.27–8.25 (1H, m), 7.48–7.38 (5H, m), 7.32–7.28 (1H, m), 7.23–7.18 (2H, m), 2.30 (2H, d, J 6.8), 1.53–1.40 (5H, m), 1.19–0.93 (4H, m) and 0.66 (2H, q, J 10.7); Rf 0.23 (1:5 EtOAc, hexanes); m.p. 447 K; IR (KBr, cm-1) 3197, 3023, 2857, 1715, 1567, 1411, 1215, 1154 and 763; HRMS (ESI) for C22H24NO [M + H]+ calculated 318.1859, found 318.1855.

To prepare (III), a 1.0 M solution of Et2AlCl in hexane (20 ml, 20 mmol) was added dropwise to a suspension of 2-phenyl­indole (2.536 g, 13.1 mmol) in dry di­chloro­methane (DCM) (56 ml) at 273 K. After 30 min stirring, a solution of 3,3-di­methyl­butanoyl chloride (2.75 ml, 19.8 mmol) in dry DCM (55 ml) was added slowly and stirring was resumed for 2 h. Water (30 ml) was added and the solution was shaken with 1.0 M HCl(aq) (30 ml). The organic phase was collected, washed with water (20 ml) and saturated NaCl(aq) (20 ml), dried (sodium sulfate), filtered and evaporated under vacuum. Flash chromatography (5:1 DCM, hexanes) yielded 3,3-di­methyl-1-(2-phenyl-1H-indol-3-yl)butan-1-one as a cream-coloured solid (1.909 g, 50%). Colourless blocks of (III) were recrystallized from ethanol solution at room temperature. δC(101 MHz; CDCl3) 199.1(Cq), 142.9 (Cq), 135.2 (Cq), 132.9 (CH), 129.7 (CH), 129.5 (CH), 128.8 (Cq), 127.4 (Cq), 123.6 (CH), 122.4 (CH), 122.3 (CH), 117.3 (CH), 110.7 (Cq), 53.8 (CH2), 31.9 (Cq) and 29.9 (CH3); δH(400 MHz; CDCl3) 8.37 (1H, br s), 8.23–8.21 (1H, m), 7.48–7.19 (8H, m), 2.34 (2H, s) and 0.77 (9H, s); Rf 0.31 (5:1 DCM, hexanes); m.p. 441–443 K; IR (KBr, cm-1) 3186, 2998, 2954, 1710, 1454, 1411, 1202, 1150, 939 and 736; HRMS (ESI) for C20H22NO [M + H]+ calculated, 292.1702, found, 292.1697.

To prepare (IV), 2-phenyl­indole (2.129 g, 11.0 mmol) was suspended in dry DCM (45 ml) at 273 K and a 1.0 M solution of Et2AlCl in hexanes (16.5 ml, 16.5 mmol) was added slowly with stirring. A solution of benzoyl chloride (1.919 ml, 16.5 mmol) in dry DCM (20 ml) was then added dropwise and the mixture was stirred at 273 K for a further 2 h. Water (30 ml) was added to quench the reaction then the solution was poured into 1.0 M HCl(aq) (100 ml) and the organic layer collected after shaking. The DCM solution was washed with water (30 ml, twice) and saturated NaCl(aq) (30 ml) then dried (sodium sulfate), filtered and reduced under vacuum. Flash chromatography (1:4 EtOAc, hexanes) afforded 3-benzoyl-2-phenyl-1H-indole as a colourless solid (2.257 g, 69%). Colourless blocks and slabs of (IV) were recrystallized from ethanol solution at room temperature. δC(101 MHz; DMSO-d6) 192.6 (Cq), 144.5 (Cq), 140.3 (Cq), 136.3 (CH), 132.0 (CH), 131.8 (Cq), 130.0 (CH), 129.5 (CH), 128.9 (CH), 128.6 (Cq), 128.5 (Cq), 128.2 (CH), 123.3 (CH), 121.8 (CH), 121.0 (CH), 112.6 (CH) and 112.3 (Cq); δH(400 MHz; DMSO-d6) 12.16 (1H, br s), 7.76 (1H, d, J 7.8), 7.71 (2H, d, J 8.4), 7.58–7.56 (3H, m), 7.49 (2H, t, J 6.9), 7.38–7.17 (4H, m), 7.13 (1H, t, J 7.2) and 7.09–7.04 (1H, m); Rf 0.20 (1:4 EtOAc, hexanes); m.p. 495–496 K; IR (KBr, cm-1) 3393, 3060, 2968, 1707, 1551, 1208, 1116, 891 and 745; HRMS (ESI) for C21H16NO [M + H]+ calculated 298.1233, found 298.1230.

Refinement details top

Crystal data, data collection and structure refinement details for (I)–(IV) are summarized in Table 5. The N-bound H atoms were located in difference maps and their positions freely refined [for (IV) they were refined as riding atoms in their as-found relative positions]. The C-bound H atoms were geometrically placed (C—H = 0.93–0.98 Å) and refined as riding atoms. The constraint Uiso(H) = 1.2Ueq(carrier) or 1.5Ueq(methyl carrier) was applied in all cases. The methyl H atoms (if any) were allowed to rotate, but not to tip, to best fit the electron density. Compound (II) crystallizes in space group P212121 but the absolute structure was indeterminate in the present experiment. The crystal of (III) was found to contain highly disordered solvent molecules. Attempts to model the disorder were ineffective and the contribution to the scattering was removed with the SQUEEZE (Spek, 2015) option in PLATON (Spek, 2009), which revealed a solvent-accessible volume of 244.3 Å3 per unit cell and 19 `solvent' electrons per unit cell. The stated formula, molecular mass, density, etc. for (III) in Table 2 do not take the solvent into account.

Computing details top

For all compounds, data collection: CrystalClear (Rigaku, 2012); cell refinement: CrystalClear (Rigaku, 2012); data reduction: CrystalClear (Rigaku, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: publCIF (Westrip, 2010).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I), showing 50% displacement ellipsoids.
[Figure 2] Fig. 2. The molecular structure of (II), showing 50% displacement ellipsoids.
[Figure 3] Fig. 3. The molecular structure of (III), showing 50% displacement ellipsoids.
[Figure 4] Fig. 4. The molecular structure of (IV), showing 50% displacement ellipsoids. The N—H···O and C—H···π bonds are indicated by double-dashed lines.
[Figure 5] Fig. 5. An inversion dimer in the crystal of (I) linked by a pair of C—H···O interactions (double-dashed lines). Symmetry code as in Table 1.
[Figure 6] Fig. 6. Partial packing diagram for (I), showing the formation of [100] double chains linked by N—H···O and C—H···O hydrogen bonds (double-dashed lines). Symmetry codes as in Table 1.
[Figure 7] Fig. 7. Partial packing diagram for (II), showing the formation of [100] chains linked by N—H···O hydrogen bonds (double-dashed lines). Symmetry code as in Table 2.
[Figure 8] Fig. 8. Partial packing diagram for (II) showing the formation of [010] chains linked by pairs of C—H···π interactions. Symmetry code as in Table 2.
[Figure 9] Fig. 9. Partial packing diagram for (III), showing the formation of [001] chains linked by N—H···O hydrogen bonds (double-dashed lines) and reinforced by aromatic ππ stacking contacts. Symmetry code as in Table 3.
[Figure 10] Fig. 10. Partial packing diagram for (IV), showing the formation of [100] chains of alternating A and B molecules linked by N—H···O hydrogen bonds (double-dashed lines) and reinforced by aromatic ππ stacking contacts. Symmetry code as in Table 4.
(I) 1-(2-Phenyl-1H-indol-3-yl)ethanone top
Crystal data top
C16H13NOZ = 2
Mr = 235.27F(000) = 248
Triclinic, P1Dx = 1.323 Mg m3
a = 7.4136 (5) ÅMo Kα radiation, λ = 0.71075 Å
b = 7.5070 (5) ÅCell parameters from 7537 reflections
c = 10.9519 (8) Åθ = 2.8–27.5°
α = 101.274 (7)°µ = 0.08 mm1
β = 92.218 (6)°T = 100 K
γ = 97.893 (7)°Slab, colourless
V = 590.74 (7) Å30.40 × 0.14 × 0.05 mm
Data collection top
Rigaku Mercury CCD
diffractometer
2432 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
Graphite monochromatorθmax = 27.5°, θmin = 2.8°
ω scansh = 99
7753 measured reflectionsk = 89
2703 independent reflectionsl = 1413
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.07 w = 1/[σ2(Fo2) + (0.0655P)2 + 0.1376P]
where P = (Fo2 + 2Fc2)/3
2703 reflections(Δ/σ)max = 0.001
167 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = 0.19 e Å3
Crystal data top
C16H13NOγ = 97.893 (7)°
Mr = 235.27V = 590.74 (7) Å3
Triclinic, P1Z = 2
a = 7.4136 (5) ÅMo Kα radiation
b = 7.5070 (5) ŵ = 0.08 mm1
c = 10.9519 (8) ÅT = 100 K
α = 101.274 (7)°0.40 × 0.14 × 0.05 mm
β = 92.218 (6)°
Data collection top
Rigaku Mercury CCD
diffractometer
2432 reflections with I > 2σ(I)
7753 measured reflectionsRint = 0.033
2703 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0400 restraints
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.07Δρmax = 0.37 e Å3
2703 reflectionsΔρmin = 0.19 e Å3
167 parameters
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.17290 (14)0.14842 (14)0.39273 (10)0.0172 (2)
C20.05849 (15)0.06773 (15)0.28675 (10)0.0202 (2)
H20.07050.05660.28860.024*
C30.14074 (16)0.00441 (15)0.17853 (10)0.0226 (2)
H30.06720.05210.10450.027*
C40.33210 (16)0.02277 (15)0.17698 (10)0.0226 (2)
H40.38540.01860.10110.027*
C50.44441 (15)0.09970 (14)0.28344 (10)0.0195 (2)
H50.57330.11000.28110.023*
C60.36453 (14)0.16230 (14)0.39494 (10)0.0166 (2)
C70.43386 (13)0.25110 (14)0.52057 (9)0.0165 (2)
C80.28168 (14)0.28785 (14)0.58734 (10)0.0166 (2)
C90.62677 (14)0.29478 (14)0.56241 (10)0.0180 (2)
C100.68827 (15)0.41016 (16)0.68934 (11)0.0236 (2)
H10A0.81360.47130.68810.035*
H10B0.68380.33150.75120.035*
H10C0.60750.50280.71140.035*
C110.26171 (13)0.37691 (14)0.71834 (10)0.0173 (2)
C120.18773 (15)0.53985 (15)0.74297 (10)0.0202 (2)
H120.15230.59410.67610.024*
C130.16559 (16)0.62334 (16)0.86536 (11)0.0250 (3)
H130.11620.73520.88180.030*
C140.21514 (16)0.54433 (17)0.96377 (10)0.0245 (3)
H140.19980.60201.04720.029*
C150.28710 (16)0.38114 (17)0.93984 (11)0.0247 (3)
H150.32030.32621.00690.030*
C160.31064 (15)0.29786 (15)0.81775 (10)0.0221 (2)
H160.36050.18620.80180.027*
N10.12741 (12)0.22642 (12)0.51028 (8)0.0180 (2)
H10.011 (2)0.2342 (19)0.5287 (13)0.022*
O10.74295 (10)0.23746 (12)0.49276 (7)0.0234 (2)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0171 (5)0.0158 (5)0.0194 (5)0.0044 (4)0.0017 (4)0.0038 (4)
C20.0172 (5)0.0212 (5)0.0220 (5)0.0045 (4)0.0013 (4)0.0034 (4)
C30.0253 (6)0.0220 (5)0.0196 (5)0.0059 (4)0.0027 (4)0.0011 (4)
C40.0263 (6)0.0214 (5)0.0210 (5)0.0080 (4)0.0047 (4)0.0026 (4)
C50.0187 (5)0.0183 (5)0.0228 (5)0.0058 (4)0.0043 (4)0.0042 (4)
C60.0153 (5)0.0148 (5)0.0206 (5)0.0036 (4)0.0011 (4)0.0048 (4)
C70.0152 (5)0.0160 (5)0.0190 (5)0.0036 (4)0.0021 (4)0.0038 (4)
C80.0142 (5)0.0157 (5)0.0201 (5)0.0026 (4)0.0006 (4)0.0040 (4)
C90.0152 (5)0.0178 (5)0.0226 (5)0.0028 (4)0.0020 (4)0.0079 (4)
C100.0171 (5)0.0259 (6)0.0260 (6)0.0003 (4)0.0027 (4)0.0038 (4)
C110.0119 (4)0.0192 (5)0.0196 (5)0.0004 (4)0.0012 (4)0.0025 (4)
C120.0195 (5)0.0217 (5)0.0201 (5)0.0049 (4)0.0011 (4)0.0048 (4)
C130.0273 (6)0.0244 (6)0.0234 (6)0.0089 (4)0.0018 (4)0.0018 (4)
C140.0239 (5)0.0296 (6)0.0180 (5)0.0035 (5)0.0014 (4)0.0003 (4)
C150.0249 (6)0.0287 (6)0.0208 (5)0.0027 (4)0.0032 (4)0.0073 (4)
C160.0215 (5)0.0205 (5)0.0243 (5)0.0049 (4)0.0017 (4)0.0039 (4)
N10.0132 (4)0.0215 (5)0.0186 (4)0.0035 (3)0.0009 (3)0.0020 (3)
O10.0144 (4)0.0320 (5)0.0256 (4)0.0064 (3)0.0041 (3)0.0075 (3)
Geometric parameters (Å, º) top
C1—N11.3809 (13)C9—C101.5041 (15)
C1—C21.3933 (15)C10—H10A0.9800
C1—C61.4090 (14)C10—H10B0.9800
C2—C31.3849 (15)C10—H10C0.9800
C2—H20.9500C11—C121.3916 (15)
C3—C41.4075 (16)C11—C161.3965 (15)
C3—H30.9500C12—C131.3903 (15)
C4—C51.3841 (16)C12—H120.9500
C4—H40.9500C13—C141.3884 (16)
C5—C61.4038 (14)C13—H130.9500
C5—H50.9500C14—C151.3852 (17)
C6—C71.4471 (14)C14—H140.9500
C7—C81.3979 (13)C15—C161.3893 (16)
C7—C91.4576 (14)C15—H150.9500
C8—N11.3643 (14)C16—H160.9500
C8—C111.4819 (14)N1—H10.898 (15)
C9—O11.2383 (13)
N1—C1—C2128.98 (10)C9—C10—H10A109.5
N1—C1—C6107.83 (9)C9—C10—H10B109.5
C2—C1—C6123.20 (10)H10A—C10—H10B109.5
C3—C2—C1117.20 (10)C9—C10—H10C109.5
C3—C2—H2121.4H10A—C10—H10C109.5
C1—C2—H2121.4H10B—C10—H10C109.5
C2—C3—C4120.75 (10)C12—C11—C16119.15 (10)
C2—C3—H3119.6C12—C11—C8119.48 (9)
C4—C3—H3119.6C16—C11—C8121.35 (10)
C5—C4—C3121.56 (10)C13—C12—C11120.08 (10)
C5—C4—H4119.2C13—C12—H12120.0
C3—C4—H4119.2C11—C12—H12120.0
C4—C5—C6118.86 (10)C14—C13—C12120.47 (11)
C4—C5—H5120.6C14—C13—H13119.8
C6—C5—H5120.6C12—C13—H13119.8
C5—C6—C1118.36 (10)C15—C14—C13119.76 (10)
C5—C6—C7134.81 (10)C15—C14—H14120.1
C1—C6—C7106.77 (9)C13—C14—H14120.1
C8—C7—C6106.36 (9)C14—C15—C16119.98 (10)
C8—C7—C9129.04 (10)C14—C15—H15120.0
C6—C7—C9124.57 (9)C16—C15—H15120.0
N1—C8—C7109.13 (9)C15—C16—C11120.57 (10)
N1—C8—C11118.22 (9)C15—C16—H16119.7
C7—C8—C11132.65 (10)C11—C16—H16119.7
O1—C9—C7119.96 (10)C8—N1—C1109.91 (9)
O1—C9—C10119.00 (10)C8—N1—H1127.8 (9)
C7—C9—C10121.05 (9)C1—N1—H1122.3 (9)
N1—C1—C2—C3178.05 (10)C6—C7—C9—O18.14 (16)
C6—C1—C2—C32.09 (16)C8—C7—C9—C106.53 (16)
C1—C2—C3—C40.36 (16)C6—C7—C9—C10171.46 (10)
C2—C3—C4—C51.74 (17)N1—C8—C11—C1263.28 (13)
C3—C4—C5—C60.67 (16)C7—C8—C11—C12116.36 (13)
C4—C5—C6—C11.67 (15)N1—C8—C11—C16114.80 (11)
C4—C5—C6—C7178.46 (11)C7—C8—C11—C1665.56 (16)
N1—C1—C6—C5176.98 (9)C16—C11—C12—C130.87 (16)
C2—C1—C6—C53.14 (16)C8—C11—C12—C13178.99 (10)
N1—C1—C6—C70.65 (11)C11—C12—C13—C140.65 (18)
C2—C1—C6—C7179.23 (9)C12—C13—C14—C150.02 (18)
C5—C6—C7—C8176.50 (11)C13—C14—C15—C160.46 (18)
C1—C6—C7—C80.55 (11)C14—C15—C16—C110.23 (17)
C5—C6—C7—C91.87 (18)C12—C11—C16—C150.43 (16)
C1—C6—C7—C9178.92 (9)C8—C11—C16—C15178.52 (10)
C6—C7—C8—N10.26 (11)C7—C8—N1—C10.15 (12)
C9—C7—C8—N1178.53 (10)C11—C8—N1—C1179.87 (9)
C6—C7—C8—C11179.41 (11)C2—C1—N1—C8179.36 (10)
C9—C7—C8—C111.14 (19)C6—C1—N1—C80.51 (12)
C8—C7—C9—O1173.88 (10)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.898 (15)2.018 (15)2.8630 (12)156.3 (12)
C12—H12···O1ii0.952.533.3583 (14)146
Symmetry codes: (i) x1, y, z; (ii) x+1, y+1, z+1.
(II) 2-Cyclohexyl-1-(2-phenyl-1H-indol-3-yl)ethanone top
Crystal data top
C22H23NODx = 1.235 Mg m3
Mr = 317.41Mo Kα radiation, λ = 0.71075 Å
Orthorhombic, P212121Cell parameters from 4889 reflections
a = 7.3587 (5) Åθ = 1.9–27.5°
b = 13.225 (1) ŵ = 0.08 mm1
c = 17.5445 (13) ÅT = 100 K
V = 1707.4 (2) Å3Rod, colourless
Z = 40.60 × 0.16 × 0.14 mm
F(000) = 680
Data collection top
Rigaku Mercury CCD
diffractometer
2802 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.045
Graphite monochromatorθmax = 27.5°, θmin = 2.8°
ω scansh = 99
8189 measured reflectionsk = 1717
3490 independent reflectionsl = 2218
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.100 w = 1/[σ2(Fo2) + (0.0111P)2 + 0.987P]
where P = (Fo2 + 2Fc2)/3
S = 1.21(Δ/σ)max < 0.001
3490 reflectionsΔρmax = 0.23 e Å3
221 parametersΔρmin = 0.22 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0029 (5)
Crystal data top
C22H23NOV = 1707.4 (2) Å3
Mr = 317.41Z = 4
Orthorhombic, P212121Mo Kα radiation
a = 7.3587 (5) ŵ = 0.08 mm1
b = 13.225 (1) ÅT = 100 K
c = 17.5445 (13) Å0.60 × 0.16 × 0.14 mm
Data collection top
Rigaku Mercury CCD
diffractometer
2802 reflections with I > 2σ(I)
8189 measured reflectionsRint = 0.045
3490 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0510 restraints
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.21Δρmax = 0.23 e Å3
3490 reflectionsΔρmin = 0.22 e Å3
221 parameters
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.5113 (3)0.83148 (17)0.07278 (14)0.0154 (5)
C20.6084 (3)0.91323 (18)0.04474 (14)0.0176 (5)
H20.73740.91500.04680.021*
C30.5096 (3)0.99203 (18)0.01371 (13)0.0214 (6)
H30.57151.04950.00590.026*
C40.3199 (4)0.98840 (19)0.01069 (15)0.0223 (6)
H40.25571.04310.01180.027*
C50.2234 (3)0.90765 (19)0.03949 (14)0.0185 (5)
H50.09440.90670.03770.022*
C60.3208 (3)0.82674 (17)0.07151 (14)0.0143 (5)
C70.2707 (3)0.73248 (17)0.10822 (13)0.0154 (5)
C80.4327 (4)0.68492 (16)0.12730 (13)0.0162 (5)
C90.0841 (4)0.70348 (16)0.12692 (13)0.0161 (5)
C100.0489 (3)0.62762 (16)0.18942 (13)0.0184 (5)
H10A0.12690.56750.18150.022*
H10B0.07950.60540.18720.022*
C110.0883 (4)0.67346 (16)0.26852 (13)0.0179 (5)
H110.21970.69270.26980.021*
C120.0567 (4)0.59550 (18)0.33148 (14)0.0232 (5)
H12A0.07040.57120.32900.028*
H12B0.13780.53680.32320.028*
C130.0930 (4)0.64022 (19)0.41026 (15)0.0283 (6)
H13A0.06550.58900.44970.034*
H13B0.22310.65830.41460.034*
C140.0226 (4)0.7338 (2)0.42403 (15)0.0314 (7)
H14A0.00740.76300.47450.038*
H14B0.15270.71480.42430.038*
C150.0112 (4)0.81255 (19)0.36219 (14)0.0261 (6)
H15A0.06990.87120.37060.031*
H15B0.13840.83660.36560.031*
C160.0229 (4)0.76918 (18)0.28315 (13)0.0217 (6)
H16A0.00860.82060.24440.026*
H16B0.15370.75330.27770.026*
C170.4700 (3)0.58519 (17)0.16354 (13)0.0154 (5)
C180.4340 (3)0.49591 (17)0.12458 (13)0.0195 (5)
H180.38620.49830.07430.023*
C190.4678 (4)0.40310 (18)0.15890 (15)0.0246 (6)
H190.44340.34220.13210.030*
C200.5369 (4)0.39947 (18)0.23207 (15)0.0249 (6)
H200.55890.33600.25570.030*
C210.5741 (4)0.48777 (18)0.27102 (15)0.0241 (6)
H210.62140.48500.32140.029*
C220.5425 (3)0.58032 (17)0.23671 (14)0.0192 (5)
H220.57040.64090.26330.023*
N10.5754 (3)0.74414 (14)0.10656 (11)0.0155 (4)
H10.696 (4)0.7293 (18)0.1088 (15)0.019*
O10.0440 (2)0.74797 (12)0.09706 (9)0.0198 (4)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0158 (13)0.0173 (11)0.0132 (12)0.0024 (9)0.0004 (10)0.0001 (9)
C20.0132 (13)0.0211 (12)0.0185 (12)0.0014 (11)0.0018 (10)0.0006 (10)
C30.0264 (15)0.0184 (12)0.0194 (13)0.0044 (11)0.0002 (11)0.0019 (11)
C40.0265 (14)0.0192 (13)0.0212 (15)0.0042 (11)0.0032 (12)0.0041 (12)
C50.0168 (13)0.0200 (12)0.0186 (12)0.0017 (11)0.0021 (11)0.0000 (11)
C60.0160 (13)0.0160 (12)0.0108 (12)0.0011 (9)0.0002 (10)0.0037 (10)
C70.0150 (12)0.0182 (11)0.0131 (12)0.0009 (10)0.0002 (11)0.0016 (10)
C80.0159 (13)0.0192 (11)0.0135 (11)0.0010 (10)0.0021 (11)0.0024 (9)
C90.0155 (12)0.0151 (11)0.0176 (12)0.0026 (10)0.0025 (12)0.0056 (9)
C100.0134 (13)0.0176 (11)0.0240 (13)0.0012 (10)0.0015 (11)0.0007 (10)
C110.0141 (12)0.0201 (11)0.0195 (12)0.0003 (10)0.0008 (12)0.0003 (9)
C120.0236 (14)0.0231 (12)0.0229 (12)0.0020 (12)0.0015 (12)0.0032 (11)
C130.0321 (16)0.0327 (14)0.0200 (13)0.0050 (13)0.0012 (14)0.0049 (11)
C140.0389 (17)0.0345 (15)0.0210 (13)0.0051 (13)0.0030 (13)0.0030 (12)
C150.0314 (16)0.0236 (12)0.0234 (14)0.0047 (11)0.0029 (12)0.0040 (10)
C160.0247 (14)0.0219 (12)0.0186 (12)0.0021 (11)0.0019 (11)0.0004 (10)
C170.0087 (11)0.0181 (11)0.0194 (11)0.0010 (10)0.0025 (10)0.0036 (10)
C180.0179 (13)0.0211 (11)0.0195 (12)0.0005 (11)0.0010 (11)0.0005 (10)
C190.0262 (14)0.0178 (11)0.0298 (14)0.0004 (11)0.0046 (12)0.0015 (11)
C200.0238 (14)0.0200 (12)0.0309 (14)0.0039 (11)0.0020 (13)0.0097 (11)
C210.0192 (13)0.0294 (13)0.0237 (12)0.0003 (12)0.0047 (12)0.0089 (11)
C220.0172 (13)0.0193 (11)0.0212 (12)0.0031 (10)0.0013 (11)0.0024 (10)
N10.0095 (10)0.0176 (9)0.0195 (10)0.0007 (9)0.0004 (9)0.0004 (8)
O10.0134 (9)0.0241 (8)0.0220 (9)0.0012 (8)0.0004 (7)0.0007 (7)
Geometric parameters (Å, º) top
C1—N11.381 (3)C12—H12A0.9900
C1—C21.386 (3)C12—H12B0.9900
C1—C61.403 (3)C13—C141.521 (4)
C2—C31.383 (3)C13—H13A0.9900
C2—H20.9500C13—H13B0.9900
C3—C41.398 (3)C14—C151.524 (4)
C3—H30.9500C14—H14A0.9900
C4—C51.378 (3)C14—H14B0.9900
C4—H40.9500C15—C161.522 (3)
C5—C61.405 (3)C15—H15A0.9900
C5—H50.9500C15—H15B0.9900
C6—C71.451 (3)C16—H16A0.9900
C7—C81.389 (3)C16—H16B0.9900
C7—C91.463 (3)C17—C181.390 (3)
C8—N11.360 (3)C17—C221.392 (3)
C8—C171.490 (3)C18—C191.389 (3)
C9—O11.229 (3)C18—H180.9500
C9—C101.509 (3)C19—C201.382 (4)
C10—C111.542 (3)C19—H190.9500
C10—H10A0.9900C20—C211.380 (3)
C10—H10B0.9900C20—H200.9500
C11—C121.529 (3)C21—C221.384 (3)
C11—C161.529 (3)C21—H210.9500
C11—H111.0000C22—H220.9500
C12—C131.527 (3)N1—H10.91 (3)
N1—C1—C2129.0 (2)C14—C13—C12111.2 (2)
N1—C1—C6108.1 (2)C14—C13—H13A109.4
C2—C1—C6123.0 (2)C12—C13—H13A109.4
C3—C2—C1117.2 (2)C14—C13—H13B109.4
C3—C2—H2121.4C12—C13—H13B109.4
C1—C2—H2121.4H13A—C13—H13B108.0
C2—C3—C4121.0 (2)C13—C14—C15110.6 (2)
C2—C3—H3119.5C13—C14—H14A109.5
C4—C3—H3119.5C15—C14—H14A109.5
C5—C4—C3121.8 (2)C13—C14—H14B109.5
C5—C4—H4119.1C15—C14—H14B109.5
C3—C4—H4119.1H14A—C14—H14B108.1
C4—C5—C6118.3 (2)C16—C15—C14111.4 (2)
C4—C5—H5120.9C16—C15—H15A109.4
C6—C5—H5120.9C14—C15—H15A109.4
C1—C6—C5118.8 (2)C16—C15—H15B109.4
C1—C6—C7106.6 (2)C14—C15—H15B109.4
C5—C6—C7134.6 (2)H15A—C15—H15B108.0
C8—C7—C6106.1 (2)C15—C16—C11112.1 (2)
C8—C7—C9129.3 (2)C15—C16—H16A109.2
C6—C7—C9124.3 (2)C11—C16—H16A109.2
N1—C8—C7109.72 (19)C15—C16—H16B109.2
N1—C8—C17118.8 (2)C11—C16—H16B109.2
C7—C8—C17131.5 (2)H16A—C16—H16B107.9
O1—C9—C7119.9 (2)C18—C17—C22119.2 (2)
O1—C9—C10119.8 (2)C18—C17—C8120.5 (2)
C7—C9—C10119.9 (2)C22—C17—C8120.4 (2)
C9—C10—C11111.12 (18)C19—C18—C17120.2 (2)
C9—C10—H10A109.4C19—C18—H18119.9
C11—C10—H10A109.4C17—C18—H18119.9
C9—C10—H10B109.4C20—C19—C18119.9 (2)
C11—C10—H10B109.4C20—C19—H19120.0
H10A—C10—H10B108.0C18—C19—H19120.0
C12—C11—C16110.8 (2)C21—C20—C19120.2 (2)
C12—C11—C10110.88 (18)C21—C20—H20119.9
C16—C11—C10112.1 (2)C19—C20—H20119.9
C12—C11—H11107.6C20—C21—C22120.0 (2)
C16—C11—H11107.6C20—C21—H21120.0
C10—C11—H11107.6C22—C21—H21120.0
C13—C12—C11111.5 (2)C21—C22—C17120.4 (2)
C13—C12—H12A109.3C21—C22—H22119.8
C11—C12—H12A109.3C17—C22—H22119.8
C13—C12—H12B109.3C8—N1—C1109.46 (19)
C11—C12—H12B109.3C8—N1—H1128.1 (16)
H12A—C12—H12B108.0C1—N1—H1122.2 (16)
N1—C1—C2—C3179.7 (2)C9—C10—C11—C1656.9 (3)
C6—C1—C2—C30.7 (4)C16—C11—C12—C1354.2 (3)
C1—C2—C3—C40.3 (4)C10—C11—C12—C13179.3 (2)
C2—C3—C4—C51.2 (4)C11—C12—C13—C1456.3 (3)
C3—C4—C5—C61.0 (4)C12—C13—C14—C1556.8 (3)
N1—C1—C6—C5179.9 (2)C13—C14—C15—C1656.0 (3)
C2—C1—C6—C50.9 (4)C14—C15—C16—C1154.9 (3)
N1—C1—C6—C71.4 (3)C12—C11—C16—C1553.6 (3)
C2—C1—C6—C7177.8 (2)C10—C11—C16—C15178.1 (2)
C4—C5—C6—C10.0 (4)N1—C8—C17—C18110.2 (3)
C4—C5—C6—C7178.2 (3)C7—C8—C17—C1868.9 (3)
C1—C6—C7—C81.7 (3)N1—C8—C17—C2269.4 (3)
C5—C6—C7—C8179.9 (3)C7—C8—C17—C22111.5 (3)
C1—C6—C7—C9172.4 (2)C22—C17—C18—C190.9 (4)
C5—C6—C7—C95.9 (4)C8—C17—C18—C19179.5 (2)
C6—C7—C8—N11.4 (2)C17—C18—C19—C200.2 (4)
C9—C7—C8—N1172.4 (2)C18—C19—C20—C210.6 (4)
C6—C7—C8—C17177.7 (2)C19—C20—C21—C220.1 (4)
C9—C7—C8—C178.5 (4)C20—C21—C22—C171.2 (4)
C8—C7—C9—O1170.9 (2)C18—C17—C22—C211.6 (3)
C6—C7—C9—O116.4 (3)C8—C17—C22—C21178.8 (2)
C8—C7—C9—C1016.2 (4)C7—C8—N1—C10.5 (2)
C6—C7—C9—C10156.5 (2)C17—C8—N1—C1178.7 (2)
O1—C9—C10—C11101.5 (2)C2—C1—N1—C8178.5 (2)
C7—C9—C10—C1171.4 (3)C6—C1—N1—C80.6 (3)
C9—C10—C11—C12178.7 (2)
Hydrogen-bond geometry (Å, º) top
Cg1 and Cg2 are the centroids of the N1/C1/C6–C8 ring and the C1–C6 ring, respectively.
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.91 (3)1.94 (3)2.806 (3)158 (2)
C20—H20···Cg1ii0.952.753.503 (3)136
C21—H21···Cg2ii0.952.613.437 (3)146
Symmetry codes: (i) x+1, y, z; (ii) x+1, y1/2, z+1/2.
(III) 3,3-Dimethyl-1-(2-phenyl-1H-indol-3-yl)butan-1-one top
Crystal data top
C20H21NODx = 1.202 Mg m3
Mr = 291.38Mo Kα radiation, λ = 0.71073 Å
Trigonal, R3Cell parameters from 21024 reflections
a = 23.3305 (16) Åθ = 1.7–27.5°
c = 15.3681 (11) ŵ = 0.07 mm1
V = 7244.3 (9) Å3T = 100 K
Z = 18Chunk, colourless
F(000) = 28080.66 × 0.60 × 0.24 mm
Data collection top
Rigaku Mercury CCD
diffractometer
3070 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.037
Graphite monochromatorθmax = 27.5°, θmin = 1.7°
ω scansh = 3030
32188 measured reflectionsk = 3030
3690 independent reflectionsl = 1919
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.08 w = 1/[σ2(Fo2) + (0.0448P)2 + 4.7609P]
where P = (Fo2 + 2Fc2)/3
3690 reflections(Δ/σ)max < 0.001
205 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = 0.18 e Å3
Crystal data top
C20H21NOZ = 18
Mr = 291.38Mo Kα radiation
Trigonal, R3µ = 0.07 mm1
a = 23.3305 (16) ÅT = 100 K
c = 15.3681 (11) Å0.66 × 0.60 × 0.24 mm
V = 7244.3 (9) Å3
Data collection top
Rigaku Mercury CCD
diffractometer
3070 reflections with I > 2σ(I)
32188 measured reflectionsRint = 0.037
3690 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0360 restraints
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.08Δρmax = 0.28 e Å3
3690 reflectionsΔρmin = 0.18 e Å3
205 parameters
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.31613 (5)0.41861 (5)0.13603 (6)0.0197 (2)
C20.34735 (6)0.48614 (5)0.15385 (7)0.0250 (2)
H20.37710.51810.11360.030*
C30.33301 (6)0.50441 (5)0.23285 (7)0.0265 (2)
H30.35380.55000.24790.032*
C40.28843 (6)0.45692 (6)0.29109 (7)0.0245 (2)
H40.27900.47100.34450.029*
C50.25777 (5)0.38987 (5)0.27288 (7)0.0210 (2)
H50.22750.35820.31300.025*
C60.27233 (5)0.36965 (5)0.19382 (6)0.0178 (2)
C70.25090 (5)0.30630 (5)0.15169 (6)0.0172 (2)
C80.28358 (5)0.32044 (5)0.07156 (6)0.0179 (2)
C90.20194 (5)0.24318 (5)0.18833 (6)0.0178 (2)
C100.16701 (5)0.18172 (5)0.13248 (7)0.0208 (2)
H10A0.19190.19020.07730.025*
H10B0.12260.17450.11780.025*
C110.15854 (5)0.11708 (5)0.17269 (7)0.0232 (2)
C120.10683 (6)0.09101 (6)0.24526 (8)0.0325 (3)
H12A0.12190.12310.29310.049*
H12B0.10070.04870.26660.049*
H12C0.06470.08450.22260.049*
C130.13580 (7)0.06571 (6)0.09973 (8)0.0365 (3)
H13A0.09350.05810.07640.055*
H13B0.13030.02410.12280.055*
H13C0.16900.08200.05330.055*
C140.22444 (6)0.12844 (6)0.20931 (9)0.0337 (3)
H14A0.23920.16140.25610.051*
H14B0.25770.14450.16290.051*
H14C0.21860.08670.23240.051*
C150.28615 (5)0.27820 (5)0.00135 (6)0.0181 (2)
C160.25997 (5)0.27699 (5)0.08041 (7)0.0214 (2)
H160.23850.30190.09070.026*
C170.26503 (5)0.23952 (5)0.14706 (7)0.0234 (2)
H170.24640.23830.20250.028*
C180.29714 (5)0.20399 (5)0.13300 (7)0.0233 (2)
H180.30110.17890.17890.028*
C190.32356 (5)0.20505 (5)0.05188 (7)0.0252 (2)
H190.34560.18070.04210.030*
C200.31782 (5)0.24169 (5)0.01498 (7)0.0227 (2)
H200.33560.24200.07070.027*
N10.32172 (4)0.38711 (4)0.06303 (6)0.02026 (19)
H10.3485 (6)0.4089 (6)0.0173 (9)0.024*
O10.18597 (4)0.24055 (4)0.26571 (5)0.02217 (17)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0212 (5)0.0223 (5)0.0178 (5)0.0125 (4)0.0013 (4)0.0009 (4)
C20.0272 (5)0.0206 (5)0.0253 (5)0.0105 (4)0.0009 (4)0.0013 (4)
C30.0311 (6)0.0216 (5)0.0282 (6)0.0140 (5)0.0047 (5)0.0055 (4)
C40.0299 (6)0.0291 (5)0.0200 (5)0.0190 (5)0.0036 (4)0.0052 (4)
C50.0224 (5)0.0258 (5)0.0180 (5)0.0144 (4)0.0007 (4)0.0004 (4)
C60.0176 (4)0.0205 (5)0.0172 (5)0.0111 (4)0.0026 (4)0.0002 (4)
C70.0179 (4)0.0203 (5)0.0157 (4)0.0112 (4)0.0015 (4)0.0005 (4)
C80.0180 (4)0.0199 (5)0.0171 (5)0.0105 (4)0.0023 (4)0.0004 (4)
C90.0174 (4)0.0213 (5)0.0171 (5)0.0115 (4)0.0016 (4)0.0013 (4)
C100.0206 (5)0.0209 (5)0.0184 (5)0.0086 (4)0.0014 (4)0.0002 (4)
C110.0230 (5)0.0193 (5)0.0260 (5)0.0095 (4)0.0021 (4)0.0005 (4)
C120.0329 (6)0.0249 (6)0.0340 (6)0.0102 (5)0.0048 (5)0.0063 (5)
C130.0441 (7)0.0243 (6)0.0364 (7)0.0135 (5)0.0037 (6)0.0070 (5)
C140.0314 (6)0.0284 (6)0.0465 (7)0.0189 (5)0.0068 (5)0.0007 (5)
C150.0169 (4)0.0177 (4)0.0169 (5)0.0067 (4)0.0020 (4)0.0007 (4)
C160.0234 (5)0.0229 (5)0.0198 (5)0.0130 (4)0.0008 (4)0.0003 (4)
C170.0272 (5)0.0243 (5)0.0170 (5)0.0116 (4)0.0020 (4)0.0010 (4)
C180.0260 (5)0.0202 (5)0.0215 (5)0.0099 (4)0.0038 (4)0.0029 (4)
C190.0283 (5)0.0252 (5)0.0274 (6)0.0174 (5)0.0003 (4)0.0013 (4)
C200.0250 (5)0.0250 (5)0.0199 (5)0.0140 (4)0.0030 (4)0.0010 (4)
N10.0230 (4)0.0193 (4)0.0173 (4)0.0098 (4)0.0025 (3)0.0012 (3)
O10.0246 (4)0.0240 (4)0.0166 (3)0.0112 (3)0.0012 (3)0.0021 (3)
Geometric parameters (Å, º) top
C1—N11.3825 (13)C11—C141.5308 (15)
C1—C21.3928 (15)C12—H12A0.9800
C1—C61.4038 (14)C12—H12B0.9800
C2—C31.3820 (16)C12—H12C0.9800
C2—H20.9500C13—H13A0.9800
C3—C41.3994 (16)C13—H13B0.9800
C3—H30.9500C13—H13C0.9800
C4—C51.3849 (15)C14—H14A0.9800
C4—H40.9500C14—H14B0.9800
C5—C61.4052 (14)C14—H14C0.9800
C5—H50.9500C15—C161.3912 (14)
C6—C71.4541 (13)C15—C201.3945 (14)
C7—C81.3983 (14)C16—C171.3894 (15)
C7—C91.4520 (14)C16—H160.9500
C8—N11.3580 (13)C17—C181.3841 (15)
C8—C151.4827 (14)C17—H170.9500
C9—O11.2385 (12)C18—C191.3855 (15)
C9—C101.5128 (14)C18—H180.9500
C10—C111.5485 (14)C19—C201.3852 (15)
C10—H10A0.9900C19—H190.9500
C10—H10B0.9900C20—H200.9500
C11—C121.5282 (16)N1—H10.909 (13)
C11—C131.5294 (15)
N1—C1—C2128.74 (10)C11—C12—H12A109.5
N1—C1—C6107.73 (9)C11—C12—H12B109.5
C2—C1—C6123.52 (9)H12A—C12—H12B109.5
C3—C2—C1116.83 (10)C11—C12—H12C109.5
C3—C2—H2121.6H12A—C12—H12C109.5
C1—C2—H2121.6H12B—C12—H12C109.5
C2—C3—C4121.09 (10)C11—C13—H13A109.5
C2—C3—H3119.5C11—C13—H13B109.5
C4—C3—H3119.5H13A—C13—H13B109.5
C5—C4—C3121.65 (10)C11—C13—H13C109.5
C5—C4—H4119.2H13A—C13—H13C109.5
C3—C4—H4119.2H13B—C13—H13C109.5
C4—C5—C6118.61 (10)C11—C14—H14A109.5
C4—C5—H5120.7C11—C14—H14B109.5
C6—C5—H5120.7H14A—C14—H14B109.5
C1—C6—C5118.27 (9)C11—C14—H14C109.5
C1—C6—C7106.61 (8)H14A—C14—H14C109.5
C5—C6—C7135.09 (9)H14B—C14—H14C109.5
C8—C7—C9129.83 (9)C16—C15—C20118.99 (9)
C8—C7—C6106.41 (8)C16—C15—C8120.49 (9)
C9—C7—C6123.68 (9)C20—C15—C8120.44 (9)
N1—C8—C7108.84 (9)C17—C16—C15120.27 (10)
N1—C8—C15118.04 (9)C17—C16—H16119.9
C7—C8—C15133.04 (9)C15—C16—H16119.9
O1—C9—C7119.16 (9)C18—C17—C16120.22 (10)
O1—C9—C10119.45 (9)C18—C17—H17119.9
C7—C9—C10121.27 (9)C16—C17—H17119.9
C9—C10—C11116.27 (8)C17—C18—C19119.93 (9)
C9—C10—H10A108.2C17—C18—H18120.0
C11—C10—H10A108.2C19—C18—H18120.0
C9—C10—H10B108.2C20—C19—C18119.94 (10)
C11—C10—H10B108.2C20—C19—H19120.0
H10A—C10—H10B107.4C18—C19—H19120.0
C12—C11—C13109.13 (9)C19—C20—C15120.64 (10)
C12—C11—C14108.98 (10)C19—C20—H20119.7
C13—C11—C14109.28 (10)C15—C20—H20119.7
C12—C11—C10111.70 (9)C8—N1—C1110.40 (8)
C13—C11—C10107.22 (9)C8—N1—H1126.0 (8)
C14—C11—C10110.49 (9)C1—N1—H1123.6 (8)
N1—C1—C2—C3179.69 (10)C6—C7—C9—C10162.05 (9)
C6—C1—C2—C30.57 (16)O1—C9—C10—C1146.46 (13)
C1—C2—C3—C40.89 (16)C7—C9—C10—C11137.54 (9)
C2—C3—C4—C51.11 (17)C9—C10—C11—C1272.06 (12)
C3—C4—C5—C60.15 (15)C9—C10—C11—C13168.44 (9)
N1—C1—C6—C5178.93 (9)C9—C10—C11—C1449.44 (12)
C2—C1—C6—C51.80 (15)N1—C8—C15—C1668.98 (13)
N1—C1—C6—C70.50 (11)C7—C8—C15—C16114.61 (12)
C2—C1—C6—C7179.78 (9)N1—C8—C15—C20107.75 (11)
C4—C5—C6—C11.53 (14)C7—C8—C15—C2068.66 (15)
C4—C5—C6—C7179.39 (10)C20—C15—C16—C170.45 (15)
C1—C6—C7—C80.81 (10)C8—C15—C16—C17177.23 (9)
C5—C6—C7—C8178.84 (11)C15—C16—C17—C181.08 (16)
C1—C6—C7—C9176.08 (9)C16—C17—C18—C190.87 (16)
C5—C6—C7—C91.95 (17)C17—C18—C19—C200.04 (16)
C9—C7—C8—N1175.80 (9)C18—C19—C20—C150.59 (16)
C6—C7—C8—N10.82 (11)C16—C15—C20—C190.38 (15)
C9—C7—C8—C157.55 (18)C8—C15—C20—C19176.40 (10)
C6—C7—C8—C15175.82 (10)C7—C8—N1—C10.53 (11)
C8—C7—C9—O1169.93 (10)C15—C8—N1—C1176.69 (8)
C6—C7—C9—O113.96 (14)C2—C1—N1—C8179.23 (10)
C8—C7—C9—C1014.06 (15)C6—C1—N1—C80.00 (11)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.909 (13)1.953 (13)2.7950 (11)153.3 (12)
Symmetry code: (i) x+y+1/3, x+2/3, z1/3.
(IV) 3-Benzoyl-2-phenyl-1H-indole top
Crystal data top
C21H15NOF(000) = 1248
Mr = 297.34Dx = 1.297 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.5065 (10) ÅCell parameters from 13275 reflections
b = 11.7911 (9) Åθ = 2.7–27.5°
c = 18.6961 (13) ŵ = 0.08 mm1
β = 107.782 (2)°T = 100 K
V = 3045.1 (4) Å3Lath, colourless
Z = 80.22 × 0.03 × 0.01 mm
Data collection top
Rigaku Mercury CCD
diffractometer
4461 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.063
Graphite monochromatorθmax = 27.5°, θmin = 2.7°
ω scansh = 1818
20680 measured reflectionsk = 1513
6949 independent reflectionsl = 2324
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.076Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.215H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.1011P)2 + 1.7166P]
where P = (Fo2 + 2Fc2)/3
6949 reflections(Δ/σ)max < 0.001
415 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = 0.23 e Å3
Crystal data top
C21H15NOV = 3045.1 (4) Å3
Mr = 297.34Z = 8
Monoclinic, P21/cMo Kα radiation
a = 14.5065 (10) ŵ = 0.08 mm1
b = 11.7911 (9) ÅT = 100 K
c = 18.6961 (13) Å0.22 × 0.03 × 0.01 mm
β = 107.782 (2)°
Data collection top
Rigaku Mercury CCD
diffractometer
4461 reflections with I > 2σ(I)
20680 measured reflectionsRint = 0.063
6949 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0760 restraints
wR(F2) = 0.215H-atom parameters constrained
S = 1.05Δρmax = 0.58 e Å3
6949 reflectionsΔρmin = 0.23 e Å3
415 parameters
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.19446 (19)0.8013 (2)0.39664 (13)0.0269 (6)
C20.2396 (2)0.9067 (3)0.40907 (14)0.0322 (6)
H2A0.30520.91580.41040.039*
C30.1852 (2)0.9976 (3)0.41944 (15)0.0354 (7)
H30.21331.07110.42770.042*
C40.0883 (2)0.9826 (3)0.41792 (16)0.0357 (7)
H40.05251.04650.42550.043*
C50.0442 (2)0.8786 (3)0.40575 (14)0.0336 (6)
H50.02120.87020.40510.040*
C60.09729 (19)0.7850 (2)0.39430 (13)0.0281 (6)
C70.07731 (18)0.6637 (2)0.37913 (13)0.0264 (6)
C80.16308 (17)0.6165 (2)0.37209 (13)0.0263 (6)
C90.01375 (19)0.6113 (2)0.37465 (14)0.0283 (6)
C100.02686 (18)0.4863 (2)0.36931 (14)0.0272 (6)
C110.02580 (19)0.4146 (2)0.42699 (14)0.0288 (6)
H110.07440.44500.46900.035*
C120.0070 (2)0.2997 (2)0.42273 (15)0.0330 (6)
H120.04070.25130.46280.040*
C130.0617 (2)0.2544 (3)0.35948 (15)0.0348 (6)
H130.07300.17490.35590.042*
C140.1135 (2)0.3254 (3)0.30192 (15)0.0339 (6)
H140.16010.29450.25900.041*
C150.09743 (19)0.4396 (3)0.30696 (14)0.0324 (6)
H150.13420.48800.26800.039*
C160.18695 (18)0.4990 (2)0.35550 (14)0.0276 (6)
C170.26730 (19)0.4451 (2)0.40466 (15)0.0302 (6)
H170.30730.48480.44700.036*
C180.2887 (2)0.3346 (3)0.39201 (16)0.0353 (7)
H180.34310.29830.42590.042*
C190.2305 (2)0.2747 (3)0.32906 (16)0.0350 (6)
H190.24470.19800.32100.042*
C200.1522 (2)0.3291 (2)0.27911 (15)0.0317 (6)
H200.11340.29030.23590.038*
C210.13070 (19)0.4405 (2)0.29238 (14)0.0292 (6)
H210.07700.47730.25800.035*
N10.23136 (15)0.69798 (19)0.38248 (11)0.0284 (5)
H10.29060.68710.38060.034*
O10.08448 (13)0.67091 (16)0.37534 (11)0.0335 (5)
C220.69538 (18)0.5190 (2)0.40301 (13)0.0260 (6)
C230.74041 (19)0.4145 (2)0.41931 (14)0.0305 (6)
H230.80600.40390.42100.037*
C240.6850 (2)0.3256 (2)0.43313 (15)0.0338 (6)
H240.71260.25210.44380.041*
C250.5884 (2)0.3439 (3)0.43146 (15)0.0348 (7)
H250.55240.28250.44220.042*
C260.54494 (19)0.4484 (2)0.41476 (14)0.0314 (6)
H260.47970.45910.41390.038*
C270.59814 (18)0.5380 (2)0.39919 (13)0.0265 (6)
C280.57881 (18)0.6581 (2)0.38018 (13)0.0270 (6)
C290.66528 (18)0.7025 (2)0.37257 (13)0.0265 (6)
C300.48733 (19)0.7126 (2)0.37205 (14)0.0292 (6)
C310.47679 (19)0.8381 (2)0.36448 (14)0.0280 (6)
C320.53489 (19)0.9104 (2)0.41874 (14)0.0300 (6)
H320.58330.88010.46080.036*
C330.5216 (2)1.0267 (3)0.41100 (15)0.0345 (6)
H330.56051.07630.44820.041*
C340.4517 (2)1.0708 (3)0.34902 (16)0.0362 (7)
H340.44391.15070.34350.043*
C350.3934 (2)1.0000 (3)0.29536 (15)0.0369 (7)
H350.34541.03110.25330.044*
C360.40478 (19)0.8845 (3)0.30272 (14)0.0320 (6)
H360.36400.83570.26610.038*
C370.68882 (19)0.8182 (2)0.35194 (14)0.0272 (6)
C380.76544 (19)0.8797 (2)0.40043 (15)0.0305 (6)
H380.80520.84500.44510.037*
C390.7836 (2)0.9894 (3)0.38400 (16)0.0355 (7)
H390.83551.03040.41740.043*
C400.7257 (2)1.0408 (3)0.31815 (16)0.0338 (6)
H400.73751.11710.30720.041*
C410.65150 (19)0.9803 (2)0.26904 (14)0.0302 (6)
H410.61291.01460.22380.036*
C420.63344 (19)0.8698 (2)0.28572 (14)0.0285 (6)
H420.58260.82850.25150.034*
N20.73368 (16)0.62092 (19)0.38683 (11)0.0287 (5)
H20.79350.63050.38600.034*
O20.41519 (13)0.65488 (17)0.37109 (11)0.0336 (5)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0263 (13)0.0337 (15)0.0227 (11)0.0053 (11)0.0106 (10)0.0020 (10)
C20.0239 (13)0.0450 (18)0.0305 (13)0.0039 (12)0.0124 (11)0.0017 (12)
C30.0397 (16)0.0324 (16)0.0347 (14)0.0063 (13)0.0123 (12)0.0000 (12)
C40.0336 (15)0.0356 (17)0.0384 (15)0.0078 (13)0.0120 (12)0.0016 (12)
C50.0233 (13)0.0487 (18)0.0316 (13)0.0019 (13)0.0128 (11)0.0007 (12)
C60.0260 (13)0.0363 (16)0.0236 (11)0.0027 (11)0.0101 (10)0.0014 (11)
C70.0181 (12)0.0379 (16)0.0252 (11)0.0038 (11)0.0096 (9)0.0005 (11)
C80.0192 (12)0.0378 (16)0.0245 (11)0.0006 (11)0.0105 (9)0.0036 (11)
C90.0235 (13)0.0380 (16)0.0265 (12)0.0033 (11)0.0123 (10)0.0019 (11)
C100.0238 (12)0.0339 (15)0.0284 (12)0.0008 (11)0.0148 (10)0.0000 (11)
C110.0244 (13)0.0380 (17)0.0260 (12)0.0010 (12)0.0104 (10)0.0009 (11)
C120.0257 (14)0.0383 (17)0.0352 (14)0.0039 (12)0.0096 (11)0.0055 (12)
C130.0295 (14)0.0391 (17)0.0400 (15)0.0048 (13)0.0169 (12)0.0035 (12)
C140.0263 (14)0.0468 (19)0.0306 (13)0.0038 (13)0.0116 (11)0.0048 (12)
C150.0241 (13)0.0497 (19)0.0252 (12)0.0022 (12)0.0101 (10)0.0047 (12)
C160.0250 (13)0.0365 (16)0.0275 (12)0.0026 (11)0.0170 (10)0.0010 (11)
C170.0248 (13)0.0389 (17)0.0317 (13)0.0036 (12)0.0156 (11)0.0023 (11)
C180.0268 (14)0.0488 (19)0.0353 (14)0.0055 (13)0.0170 (11)0.0076 (13)
C190.0348 (15)0.0346 (16)0.0443 (15)0.0022 (13)0.0251 (13)0.0004 (12)
C200.0293 (14)0.0382 (16)0.0329 (13)0.0057 (12)0.0175 (11)0.0067 (12)
C210.0247 (13)0.0399 (17)0.0265 (12)0.0019 (12)0.0129 (10)0.0017 (11)
N10.0192 (10)0.0386 (14)0.0305 (11)0.0009 (10)0.0121 (9)0.0011 (9)
O10.0230 (10)0.0385 (12)0.0432 (11)0.0058 (8)0.0162 (8)0.0060 (9)
C220.0252 (13)0.0331 (15)0.0215 (11)0.0023 (11)0.0096 (10)0.0008 (10)
C230.0219 (12)0.0462 (18)0.0264 (12)0.0042 (12)0.0118 (10)0.0026 (11)
C240.0398 (16)0.0326 (16)0.0295 (13)0.0087 (13)0.0115 (12)0.0023 (11)
C250.0361 (16)0.0402 (18)0.0312 (13)0.0105 (13)0.0147 (12)0.0013 (12)
C260.0234 (13)0.0436 (17)0.0289 (13)0.0018 (12)0.0108 (11)0.0012 (12)
C270.0239 (13)0.0342 (15)0.0228 (11)0.0009 (11)0.0091 (10)0.0029 (10)
C280.0202 (12)0.0373 (16)0.0259 (12)0.0029 (11)0.0107 (10)0.0005 (11)
C290.0188 (12)0.0387 (16)0.0240 (11)0.0022 (11)0.0093 (9)0.0042 (11)
C300.0225 (13)0.0417 (17)0.0269 (12)0.0016 (12)0.0126 (10)0.0051 (11)
C310.0239 (13)0.0360 (16)0.0282 (12)0.0006 (11)0.0139 (10)0.0010 (11)
C320.0277 (13)0.0394 (17)0.0259 (12)0.0013 (12)0.0126 (10)0.0014 (11)
C330.0341 (15)0.0402 (17)0.0322 (14)0.0004 (13)0.0147 (12)0.0032 (12)
C340.0384 (16)0.0377 (17)0.0390 (15)0.0076 (13)0.0215 (13)0.0036 (13)
C350.0303 (15)0.052 (2)0.0316 (14)0.0102 (14)0.0140 (12)0.0078 (13)
C360.0227 (13)0.0485 (18)0.0268 (12)0.0007 (12)0.0107 (10)0.0022 (12)
C370.0253 (13)0.0325 (15)0.0288 (12)0.0013 (11)0.0159 (10)0.0015 (11)
C380.0218 (13)0.0395 (17)0.0330 (13)0.0042 (12)0.0123 (10)0.0019 (12)
C390.0246 (13)0.0461 (19)0.0391 (15)0.0081 (13)0.0144 (12)0.0036 (13)
C400.0326 (15)0.0347 (16)0.0402 (15)0.0040 (12)0.0200 (12)0.0028 (12)
C410.0265 (13)0.0398 (16)0.0290 (12)0.0042 (12)0.0156 (11)0.0065 (11)
C420.0251 (13)0.0377 (16)0.0271 (12)0.0008 (11)0.0145 (10)0.0023 (11)
N20.0208 (11)0.0379 (14)0.0304 (11)0.0027 (10)0.0122 (9)0.0013 (10)
O20.0197 (9)0.0404 (12)0.0443 (11)0.0034 (8)0.0151 (8)0.0045 (9)
Geometric parameters (Å, º) top
C1—N11.389 (3)C22—C231.385 (4)
C1—C21.391 (4)C22—N21.395 (3)
C1—C61.410 (4)C22—C271.408 (3)
C2—C31.379 (4)C23—C241.392 (4)
C2—H2A0.9500C23—H230.9500
C3—C41.408 (4)C24—C251.409 (4)
C3—H30.9500C24—H240.9500
C4—C51.370 (4)C25—C261.375 (4)
C4—H40.9500C25—H250.9500
C5—C61.399 (4)C26—C271.391 (4)
C5—H50.9500C26—H260.9500
C6—C71.470 (4)C27—C281.466 (4)
C7—C81.405 (3)C28—C291.406 (3)
C7—C91.437 (4)C28—C301.440 (4)
C8—N11.351 (3)C29—N21.348 (3)
C8—C161.484 (4)C29—C371.487 (4)
C9—O11.247 (3)C30—O21.244 (3)
C9—C101.486 (4)C30—C311.491 (4)
C10—C111.399 (4)C31—C321.394 (4)
C10—C151.408 (4)C31—C361.410 (4)
C11—C121.379 (4)C32—C331.386 (4)
C11—H110.9500C32—H320.9500
C12—C131.399 (4)C33—C341.387 (4)
C12—H120.9500C33—H330.9500
C13—C141.389 (4)C34—C351.379 (4)
C13—H130.9500C34—H340.9500
C14—C151.364 (4)C35—C361.374 (4)
C14—H140.9500C35—H350.9500
C15—H150.9500C36—H360.9500
C16—C211.395 (4)C37—C421.393 (4)
C16—C171.398 (4)C37—C381.402 (4)
C17—C181.377 (4)C38—C391.374 (4)
C17—H170.9500C38—H380.9500
C18—C191.411 (4)C39—C401.398 (4)
C18—H180.9500C39—H390.9500
C19—C201.387 (4)C40—C411.381 (4)
C19—H190.9500C40—H400.9500
C20—C211.389 (4)C41—C421.384 (4)
C20—H200.9500C41—H410.9500
C21—H210.9500C42—H420.9500
N1—H10.8800N2—H20.8800
N1—C1—C2128.8 (2)C23—C22—N2128.5 (2)
N1—C1—C6108.3 (2)C23—C22—C27123.4 (2)
C2—C1—C6122.9 (2)N2—C22—C27108.1 (2)
C3—C2—C1117.2 (2)C22—C23—C24116.8 (2)
C3—C2—H2A121.4C22—C23—H23121.6
C1—C2—H2A121.4C24—C23—H23121.6
C2—C3—C4120.7 (3)C23—C24—C25120.5 (3)
C2—C3—H3119.7C23—C24—H24119.8
C4—C3—H3119.7C25—C24—H24119.8
C5—C4—C3121.9 (3)C26—C25—C24121.8 (3)
C5—C4—H4119.1C26—C25—H25119.1
C3—C4—H4119.1C24—C25—H25119.1
C4—C5—C6118.7 (2)C25—C26—C27118.8 (2)
C4—C5—H5120.6C25—C26—H26120.6
C6—C5—H5120.6C27—C26—H26120.6
C5—C6—C1118.6 (3)C26—C27—C22118.7 (2)
C5—C6—C7135.4 (2)C26—C27—C28135.0 (2)
C1—C6—C7106.0 (2)C22—C27—C28106.3 (2)
C8—C7—C9130.5 (3)C29—C28—C30130.2 (3)
C8—C7—C6106.0 (2)C29—C28—C27105.9 (2)
C9—C7—C6123.5 (2)C30—C28—C27124.0 (2)
N1—C8—C7109.7 (2)N2—C29—C28109.9 (2)
N1—C8—C16119.1 (2)N2—C29—C37119.5 (2)
C7—C8—C16131.2 (2)C28—C29—C37130.6 (2)
O1—C9—C7120.1 (3)O2—C30—C28120.1 (3)
O1—C9—C10118.1 (2)O2—C30—C31118.7 (2)
C7—C9—C10121.8 (2)C28—C30—C31121.2 (2)
C11—C10—C15119.3 (3)C32—C31—C36119.4 (3)
C11—C10—C9121.3 (2)C32—C31—C30121.1 (2)
C15—C10—C9119.3 (2)C36—C31—C30119.5 (2)
C12—C11—C10119.8 (3)C33—C32—C31119.7 (3)
C12—C11—H11120.1C33—C32—H32120.2
C10—C11—H11120.1C31—C32—H32120.2
C11—C12—C13120.1 (3)C32—C33—C34120.1 (3)
C11—C12—H12119.9C32—C33—H33120.0
C13—C12—H12120.0C34—C33—H33120.0
C14—C13—C12120.1 (3)C35—C34—C33120.7 (3)
C14—C13—H13120.0C35—C34—H34119.7
C12—C13—H13120.0C33—C34—H34119.7
C15—C14—C13120.1 (3)C36—C35—C34120.0 (3)
C15—C14—H14120.0C36—C35—H35120.0
C13—C14—H14120.0C34—C35—H35120.0
C14—C15—C10120.6 (3)C35—C36—C31120.2 (3)
C14—C15—H15119.7C35—C36—H36119.9
C10—C15—H15119.7C31—C36—H36119.9
C21—C16—C17119.1 (3)C42—C37—C38118.5 (3)
C21—C16—C8121.7 (2)C42—C37—C29121.0 (2)
C17—C16—C8119.2 (2)C38—C37—C29120.4 (2)
C18—C17—C16120.3 (3)C39—C38—C37120.7 (3)
C18—C17—H17119.9C39—C38—H38119.7
C16—C17—H17119.9C37—C38—H38119.7
C17—C18—C19120.5 (3)C38—C39—C40120.0 (3)
C17—C18—H18119.7C38—C39—H39120.0
C19—C18—H18119.7C40—C39—H39120.0
C20—C19—C18119.2 (3)C41—C40—C39119.9 (3)
C20—C19—H19120.4C41—C40—H40120.1
C18—C19—H19120.4C39—C40—H40120.1
C21—C20—C19120.0 (3)C42—C41—C40119.9 (3)
C21—C20—H20120.0C42—C41—H41120.0
C19—C20—H20120.0C40—C41—H41120.0
C20—C21—C16120.9 (3)C41—C42—C37120.9 (3)
C20—C21—H21119.6C41—C42—H42119.5
C16—C21—H21119.6C37—C42—H42119.5
C8—N1—C1110.1 (2)C29—N2—C22109.8 (2)
C8—N1—H1125.0C29—N2—H2125.1
C1—N1—H1125.0C22—N2—H2125.1
N1—C1—C2—C3177.9 (2)N2—C22—C23—C24179.7 (2)
C6—C1—C2—C30.1 (4)C27—C22—C23—C240.7 (4)
C1—C2—C3—C40.5 (4)C22—C23—C24—C251.0 (4)
C2—C3—C4—C50.4 (4)C23—C24—C25—C261.4 (4)
C3—C4—C5—C60.2 (4)C24—C25—C26—C270.0 (4)
C4—C5—C6—C10.7 (4)C25—C26—C27—C221.6 (4)
C4—C5—C6—C7179.2 (3)C25—C26—C27—C28179.4 (3)
N1—C1—C6—C5178.9 (2)C23—C22—C27—C262.0 (4)
C2—C1—C6—C50.7 (4)N2—C22—C27—C26178.8 (2)
N1—C1—C6—C71.1 (3)C23—C22—C27—C28179.6 (2)
C2—C1—C6—C7179.3 (2)N2—C22—C27—C280.4 (3)
C5—C6—C7—C8178.9 (3)C26—C27—C28—C29179.0 (3)
C1—C6—C7—C81.1 (3)C22—C27—C28—C291.0 (3)
C5—C6—C7—C92.0 (4)C26—C27—C28—C301.0 (4)
C1—C6—C7—C9178.1 (2)C22—C27—C28—C30179.0 (2)
C9—C7—C8—N1178.4 (2)C30—C28—C29—N2178.7 (2)
C6—C7—C8—N10.7 (3)C27—C28—C29—N21.3 (3)
C9—C7—C8—C162.2 (5)C30—C28—C29—C371.8 (4)
C6—C7—C8—C16178.8 (2)C27—C28—C29—C37178.2 (2)
C8—C7—C9—O1173.0 (2)C29—C28—C30—O2170.2 (2)
C6—C7—C9—O18.1 (4)C27—C28—C30—O29.8 (4)
C8—C7—C9—C107.1 (4)C29—C28—C30—C319.7 (4)
C6—C7—C9—C10171.7 (2)C27—C28—C30—C31170.4 (2)
O1—C9—C10—C11117.3 (3)O2—C30—C31—C32123.6 (3)
C7—C9—C10—C1162.6 (3)C28—C30—C31—C3256.5 (3)
O1—C9—C10—C1559.2 (3)O2—C30—C31—C3654.3 (3)
C7—C9—C10—C15121.0 (3)C28—C30—C31—C36125.6 (3)
C15—C10—C11—C121.0 (4)C36—C31—C32—C330.5 (4)
C9—C10—C11—C12175.4 (2)C30—C31—C32—C33178.4 (2)
C10—C11—C12—C132.7 (4)C31—C32—C33—C340.9 (4)
C11—C12—C13—C142.1 (4)C32—C33—C34—C351.4 (4)
C12—C13—C14—C150.0 (4)C33—C34—C35—C360.5 (4)
C13—C14—C15—C101.6 (4)C34—C35—C36—C310.8 (4)
C11—C10—C15—C141.1 (4)C32—C31—C36—C351.3 (4)
C9—C10—C15—C14177.6 (2)C30—C31—C36—C35179.3 (2)
N1—C8—C16—C21125.5 (3)N2—C29—C37—C42124.5 (3)
C7—C8—C16—C2153.9 (4)C28—C29—C37—C4255.0 (4)
N1—C8—C16—C1755.1 (3)N2—C29—C37—C3857.9 (3)
C7—C8—C16—C17125.5 (3)C28—C29—C37—C38122.6 (3)
C21—C16—C17—C181.9 (4)C42—C37—C38—C391.9 (4)
C8—C16—C17—C18177.5 (2)C29—C37—C38—C39175.7 (2)
C16—C17—C18—C190.5 (4)C37—C38—C39—C400.4 (4)
C17—C18—C19—C201.2 (4)C38—C39—C40—C411.2 (4)
C18—C19—C20—C211.5 (4)C39—C40—C41—C421.1 (4)
C19—C20—C21—C160.1 (4)C40—C41—C42—C370.4 (4)
C17—C16—C21—C201.6 (4)C38—C37—C42—C411.9 (4)
C8—C16—C21—C20177.8 (2)C29—C37—C42—C41175.7 (2)
C7—C8—N1—C10.0 (3)C28—C29—N2—C221.1 (3)
C16—C8—N1—C1179.5 (2)C37—C29—N2—C22178.5 (2)
C2—C1—N1—C8178.8 (2)C23—C22—N2—C29178.7 (2)
C6—C1—N1—C80.7 (3)C27—C22—N2—C290.4 (3)
Hydrogen-bond geometry (Å, º) top
Cg8, Cg1, Cg7, Cg3 and Cg6 are the centroids of the C31–C36, N1/C1/C6–C8, C22–C27, C10–C15 and N2/C22/C27–C29 rings, respectively.
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.881.912.786 (3)176
N2—H2···O1i0.881.902.775 (3)171
C20—H20···O1ii0.952.443.324 (3)155
C41—H41···O2iii0.952.373.239 (3)152
C2—H2A···Cg80.952.813.715 (3)158
C14—H14···Cg1ii0.952.893.616 (3)134
C17—H17···Cg7iv0.952.623.508 (3)156
C23—H23···Cg3i0.952.723.608 (3)156
C35—H35···Cg6iii0.952.803.527 (3)134
Symmetry codes: (i) x+1, y, z; (ii) x, y1/2, z+1/2; (iii) x+1, y+1/2, z+1/2; (iv) x+1, y+1, z+1.
Hydrogen-bond geometry (Å, º) for (I) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.898 (15)2.018 (15)2.8630 (12)156.3 (12)
C12—H12···O1ii0.952.533.3583 (14)146
Symmetry codes: (i) x1, y, z; (ii) x+1, y+1, z+1.
Hydrogen-bond geometry (Å, º) for (II) top
Cg1 and Cg2 are the centroids of the N1/C1/C6–C8 ring and the C1–C6 ring, respectively.
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.91 (3)1.94 (3)2.806 (3)158 (2)
C20—H20···Cg1ii0.952.753.503 (3)136
C21—H21···Cg2ii0.952.613.437 (3)146
Symmetry codes: (i) x+1, y, z; (ii) x+1, y1/2, z+1/2.
Hydrogen-bond geometry (Å, º) for (III) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.909 (13)1.953 (13)2.7950 (11)153.3 (12)
Symmetry code: (i) x+y+1/3, x+2/3, z1/3.
Hydrogen-bond geometry (Å, º) for (IV) top
Cg8, Cg1, Cg7, Cg3 and Cg6 are the centroids of the C31–C36, N1/C1/C6–C8, C22–C27, C10–C15 and N2/C22/C27–C29 rings, respectively.
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.881.912.786 (3)176
N2—H2···O1i0.881.902.775 (3)171
C20—H20···O1ii0.952.443.324 (3)155
C41—H41···O2iii0.952.373.239 (3)152
C2—H2A···Cg80.952.813.715 (3)158
C14—H14···Cg1ii0.952.893.616 (3)134
C17—H17···Cg7iv0.952.623.508 (3)156
C23—H23···Cg3i0.952.723.608 (3)156
C35—H35···Cg6iii0.952.803.527 (3)134
Symmetry codes: (i) x+1, y, z; (ii) x, y1/2, z+1/2; (iii) x+1, y+1/2, z+1/2; (iv) x+1, y+1, z+1.

Experimental details

(I)(II)(III)(IV)
Crystal data
Chemical formulaC16H13NOC22H23NOC20H21NOC21H15NO
Mr235.27317.41291.38297.34
Crystal system, space groupTriclinic, P1Orthorhombic, P212121Trigonal, R3Monoclinic, P21/c
Temperature (K)100100100100
a, b, c (Å)7.4136 (5), 7.5070 (5), 10.9519 (8)7.3587 (5), 13.225 (1), 17.5445 (13)23.3305 (16), 23.3305 (16), 15.3681 (11)14.5065 (10), 11.7911 (9), 18.6961 (13)
α, β, γ (°)101.274 (7), 92.218 (6), 97.893 (7)90, 90, 9090, 90, 12090, 107.782 (2), 90
V3)590.74 (7)1707.4 (2)7244.3 (9)3045.1 (4)
Z24188
Radiation typeMo KαMo KαMo KαMo Kα
µ (mm1)0.080.080.070.08
Crystal size (mm)0.40 × 0.14 × 0.050.60 × 0.16 × 0.140.66 × 0.60 × 0.240.22 × 0.03 × 0.01
Data collection
DiffractometerRigaku Mercury CCDRigaku Mercury CCDRigaku Mercury CCDRigaku Mercury CCD
Absorption correction
No. of measured, independent and
observed [I > 2σ(I)] reflections
7753, 2703, 2432 8189, 3490, 2802 32188, 3690, 3070 20680, 6949, 4461
Rint0.0330.0450.0370.063
(sin θ/λ)max1)0.6500.6500.6490.649
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.040, 0.114, 1.07 0.051, 0.100, 1.21 0.036, 0.092, 1.08 0.076, 0.215, 1.05
No. of reflections2703349036906949
No. of parameters167221205415
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.37, 0.190.23, 0.220.28, 0.180.58, 0.23

Computer programs: CrystalClear (Rigaku, 2012), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), publCIF (Westrip, 2010).

 

Acknowledgements

We thank the EPSRC National Crystallography Service (University of Southampton) for the data collections and the EPSRC National Mass Spectrometry Service (University of Swansea) for the HRMS data.

References

First citationBarden, T. C. (2011). Top. Heterocycl. Chem. 26, 31–46.  CrossRef Google Scholar
First citationBiswal, S., Sahoo, U., Sethy, S., Kumar, H. K. S. & Banerjee, M. (2012). Asian J. Pharm. Clin. Res. 5, 1–6.  CAS Google Scholar
First citationCoffman, K. C., Palazzo, T. A., Hartley, T. P., Fettinger, J. C., Tantillo, D. J. & Kurth, M. J. (2013). Org. Lett. 15, 2062–2065.  CSD CrossRef CAS PubMed Google Scholar
First citationFarrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationFrança, P. H. B., Barbosa, D. P., da Silva, D. L., Ribeiro, E. A. N., Santana, A. E. G., Santos, B. V. O., Barbosa-Filho, J. M., Quintans, J. S. S., Barreto, R. S. S., Quintans-Júnior, L. J. & de Araújo-Júnior, J. X. (2014). BioMed. Res. Int. Article ID 375423.  Google Scholar
First citationGroom, C. R. & Allen, F. H. (2014). Angew. Chem. Int. Ed. 53, 662–671.  Web of Science CSD CrossRef CAS Google Scholar
First citationHadimani, M. B., Kessler, R. J., Kautz, J. A., Ghatak, A., Shirali, A. R., O'Dell, H., Garner, C. M. & Pinney, K. G. (2002). Acta Cryst. C58, o330–o332.  CSD CrossRef CAS IUCr Journals Google Scholar
First citationHuang, F., Wu, P., Wang, L., Chen, J., Sun, C. & Yu, Z. (2014). J. Org. Chem. 79, 10553–10560.  CSD CrossRef CAS PubMed Google Scholar
First citationHwu, J. R., Hsu, Y. C., Josephrajan, T. & Tsay, S. C. (2009). J. Mater. Chem. 19, 3084–3090.  CSD CrossRef CAS Google Scholar
First citationKaushik, N. K., Kaushik, N., Attri, P., Kumar, N., Kim, C. H., Verma, A. K. & Choi, E. H. (2013). Molecules, 18, 6620–6662.  Web of Science CrossRef CAS PubMed Google Scholar
First citationKerr, J. R. (2013). PhD thesis, University of Aberdeen, Scotland.  Google Scholar
First citationKerr, J. R., Trembleau, L., Storey, J. M. D., Wardell, J. L. & Harrison, W. T. A. (2015). Acta Cryst. E71, 654–659.  CSD CrossRef IUCr Journals Google Scholar
First citationRigaku (2012). CrystalClear. Rigaku Corporation, Tokyo, Japan.  Google Scholar
First citationSharma, V., Kumar, P. & Pathaka, D. J. (2010). J. Heterocycl. Chem. 47, 491–501.  CAS Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationShi, L., Xue, L., Lang, R., Xia, C. & Li, F. (2014). ChemCatChem, 6, 2560–2566.  CSD CrossRef CAS Google Scholar
First citationSpek, A. L. (2009). Acta Cryst. D65, 148–155.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSpek, A. L. (2015). Acta Cryst. C71, 9–18.  Web of Science CrossRef IUCr Journals Google Scholar
First citationWestrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.  Web of Science CrossRef CAS IUCr Journals Google Scholar

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Volume 72| Part 3| March 2016| Pages 363-369
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