research communications
Crystal structures of the two salts 2-methyl-1H-imidazol-3-ium nitrate–2-methyl-1H-imidazole (1/1) and 2-methyl-1H-imidazol-3-ium nitrate
aLaboratoire de Chimie Minérale et Analytique, Département de Chimie, Faculté des Sciences et Techniques, Université Cheikh Anta Diop, Dakar, Senegal, and bDépartement de Chimie, Université de Montréal, 2900 Boulevard Édouard-Montpetit, Montréal, Québec, H3C 3J7, Canada
*Correspondence e-mail: mouhamadoubdiop@gmail.com
The title salts, C4H7N2+·NO3−·C4H6N2, (I), and C4H7N2+·NO3−, (II), were obtained from solutions containing 2-methylimidazole and nitric acid in different concentrations. In the of salt (I), one of the –NH H atoms of the imidazole ring shows half-occupancy, hence only every second molecule is in its cationic form. The nitrate anion in this structure lies on a twofold rotation axis. The neutral 2-methylimidazole molecule and the 2-methyl-1H-imidazol-3-ium cation interact through N—H⋯N hydrogen bonds to form [(C4H6N2)⋯(C4H7N2)+] pairs. These pairs are linked with two nitrate anions on both sides through bifurcated N—H⋯(O,O) hydrogen bonds into chains running parallel to [001]. In the of salt (II), the C4H7N2+ cation and the NO3− anion are both located on a mirror plane, leading to a statistical disorder of the methyl H atoms. The cations and anions again interact through bifurcated N—H⋯(O,O) hydrogen bonds, giving rise to the formation of chains consisting of alternating anions and cations parallel to [100].
1. Chemical context
While targeting the synthesis of new SnIV complexes, crystals of the salt C4H7N2+·NO3−, (II), were obtained serendipitously by mixing trimethyltin acetate with 2-methylimidazole in the presence of nitric acid. In the dynamic of seeking new ammonium salts soluble in organic solvents that can be used for further metallorganic syntheses, we have initiated the targeted preparation of this salt. However, by variation of the ratio between nitric acid and 2-methylimidazole we also obtained crystals of compound (I), C4H6N2·C4H7N2+·NO3−, and report the two structures in this communication.
2. Structural commentary
The consists of a 2-methylimidazole moiety in a general position and part of a nitrate anion. The anion is completed by application of twofold rotation symmetry. The hydrogen atom H1 attached to N1 of the imidazole ring has a statistical occupancy of 0.5, thus leading to a 1:1 mixture of a 2-methyl-1H-imidazol-3-ium cation and a neutral 2-methylimidazole molecule in the crystal applying (i) 1 − x, y, − z (Fig. 1). In the nitrate anion, the N—O bond lengths [1.2433 (11)–1.2774 (19) Å], are in a typical range (see, for example, Diop et al., 2013) and indicate some π delocalization over the two oxygen atoms O1 and O1i. The longer N—O distance is observed for atom O2 involved in the stronger of the two observed N—H⋯O hydrogen bonds (Table 1). The imidazole ring is planar with a maximum deviation of 0.005 (1) Å. The of salt (II) consists of an ordered 2-methyl-1H-imidazol-3-ium cation and a nitrate anion (Fig. 2), both lying on a mirror plane.
of salt (I)In the two structures, the O—N—O angles have normal values close to 120° and their sum (360°) reflect a perfect trigonal–planar geometry for each of the nitrate anions. For the 2-methyl-1H-imidazol-3-ium cations and for the neutral 2-methylimidazole molecule, the N—C distances involving C2, the C atom that carries the methyl group, are equal within 0.01 Å, and their values are consistent with double-bond character, as previously observed (Diop et al., 2015).
3. Supramolecular features
In the , the neutral 2-methylimidazole molecule is connected to the 2-methyl-1H-imidazol-3-ium cation through N—H⋯N hydrogen bonds, forming a [(C4H6N2)⋯(C4H7N2)+] pair (Fig. 1). Such pairs are then linked to two nitrate anions through bifurcated N—H⋯(O,O) hydrogen bonds (Table 1), leading to chains extending along [001] (Fig. 3).
of salt (I)In the , the 2-methyl-1H-imidazol-3-ium cations and the nitrate anions are alternately linked by bifurcated N—H⋯(O,O) hydrogen bonds (Table 2), leading to the formation of hydrogen-bonded chains parallel to [100] (Fig. 4).
of (II)
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In the two structures, the stability between the chains is dominated by electrostatic interactions.
4. Database survey
A search of the Cambridge Structural Database (Version 5.37 with one update, Groom & Allen, 2014) for structures containing imidazole or imidazolium rings with nitrate anions returned 21 hits. Molecular chains with bifurcated hydrogen bonds between imidazol-3-ium cations and nitrate anions as found in (II) have been reported for 2-(1-naphthyldiazenyl)-1H-imidazol-3-ium nitrate (Pramanik et al., 2010), 2-azidoimidazolium nitrate (Tang et al., 2012) and 2-phenylimidazolium nitrate hemihydrate (Zhang et al., 2007). Molecular chains similar to those observed in (I) with pairs of imidazole and imidazolium rings linked through bifurcated hydrogen bonds to nitrate anions are also found in the structure of 2-(1H-imidazol-2-yl)-1H-imidazol-3-ium nitrate (Jin et al., 2011).
5. Synthesis and crystallization
All chemicals were purchased from Aldrich (Germany) and were used as received. Single crystals suitable for X-ray studies of (II) were first obtained by serendipity when a mixture of 2-methylimidazole and concentrated nitric acid was added to trimethyltin acetate in methanol. Colourless single crystals of (I) were obtained after slow evaporation at room temperature of an aqueous solution consisting of 2-methylimidazole and concentrated nitric acid in a 2:1 ratio. Compound (II) can also be prepared in a similar way by changing the ratio between 2-methylimidazole and nitric acid to 1:1.
6. Refinement
Crystal data, data collection and structure . For (I), all H atoms were clearly discernible from difference Fourier maps and were freely refined. Half-occupancy of H1 is required for structural reasons and was indicated by the values of the residual density peaks found in the difference Fourier map (0.83 vs 0.47 e Å−3 for an occupancy factor of 1 and 0.5, respectively). For (II), the H atoms bound to C were placed in calculated positions and then refined using a riding model with C—H = 0.95 Å (aromatic) and 0.98 Å (methyl) and Uiso(H) = 1.2 and 1.5Ueq(C), respectively. As a result of the mirror symmetry of the 2-methyl-1H-imidazol-3-ium cation, the methyl H atoms are statistically disordered over two positions. H atoms bound to N atoms were located from a difference Fourier map and were freely refined.
details are summarized in Table 3
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Supporting information
https://doi.org/10.1107/S2056989016003789/wm5276sup1.cif
contains datablocks global, II, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989016003789/wm5276Isup2.hkl
Structure factors: contains datablock II. DOI: https://doi.org/10.1107/S2056989016003789/wm5276IIsup3.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989016003789/wm5276Isup4.cml
Supporting information file. DOI: https://doi.org/10.1107/S2056989016003789/wm5276IIsup5.cml
For both compounds, data collection: APEX2 (Bruker, 2014); cell
SAINT (Bruker, 2014); data reduction: SAINT (Bruker, 2014); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009) and Mercury (Macrae et al., 2008); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009) and publCIF (Westrip, 2010).C4H6N2+·NO3−·C4H7N2 | F(000) = 480 |
Mr = 227.23 | Dx = 1.363 Mg m−3 |
Monoclinic, C2/c | Ga Kα radiation, λ = 1.34139 Å |
a = 10.1879 (4) Å | Cell parameters from 6125 reflections |
b = 10.0912 (4) Å | θ = 5.7–60.7° |
c = 11.9055 (5) Å | µ = 0.58 mm−1 |
β = 115.188 (2)° | T = 100 K |
V = 1107.60 (8) Å3 | Block, clear light colourless |
Z = 4 | 0.25 × 0.19 × 0.19 mm |
Bruker Venture Metaljet diffractometer | 1286 independent reflections |
Radiation source: Metal Jet, Gallium Liquid Metal Jet Source | 1210 reflections with I > 2σ(I) |
Helios MX Mirror Optics monochromator | Rint = 0.033 |
Detector resolution: 10.24 pixels mm-1 | θmax = 60.7°, θmin = 5.7° |
ω and φ scans | h = −12→13 |
Absorption correction: multi-scan (SADABS; Krause et al., 2015) | k = −13→13 |
Tmin = 0.682, Tmax = 0.752 | l = −15→13 |
8771 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | All H-atom parameters refined |
wR(F2) = 0.100 | w = 1/[σ2(Fo2) + (0.053P)2 + 0.953P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
1286 reflections | Δρmax = 0.25 e Å−3 |
102 parameters | Δρmin = −0.20 e Å−3 |
0 restraints |
Experimental. X-ray crystallographic data for I were collected from a single crystal sample, which was mounted on a loop fiber. Data were collected using a Bruker Venture diffractometer equipped with a Photon 100 CMOS Detector, a Helios MX optics and a Kappa goniometer. The crystal-to-detector distance was 4.0 cm, and the data collection was carried out in 1024 x 1024 pixel mode. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1 | 0.56964 (11) | 0.62468 (10) | 0.37404 (10) | 0.0219 (3) | |
H1 | 0.533 (4) | 0.626 (3) | 0.297 (3) | 0.034 (9)* | 0.5 |
N2 | 0.59828 (11) | 0.65353 (10) | 0.56421 (9) | 0.0198 (2) | |
C1 | 0.37127 (14) | 0.74799 (14) | 0.39888 (12) | 0.0265 (3) | |
H1A | 0.386 (2) | 0.837 (2) | 0.3796 (19) | 0.053 (6)* | |
H1B | 0.303 (2) | 0.713 (2) | 0.3230 (19) | 0.049 (5)* | |
H1C | 0.333 (2) | 0.741 (2) | 0.454 (2) | 0.058 (6)* | |
C2 | 0.51030 (12) | 0.67449 (11) | 0.44456 (10) | 0.0189 (3) | |
H2 | 0.578 (2) | 0.6791 (19) | 0.6223 (17) | 0.036 (4)* | |
C3 | 0.70215 (14) | 0.57154 (12) | 0.45264 (12) | 0.0251 (3) | |
H3 | 0.766 (2) | 0.5300 (18) | 0.4208 (15) | 0.037 (4)* | |
C4 | 0.72067 (13) | 0.58907 (12) | 0.57091 (12) | 0.0238 (3) | |
H4 | 0.802 (2) | 0.5656 (17) | 0.6485 (16) | 0.034 (4)* | |
O1 | 0.45994 (10) | 0.92001 (9) | 0.82112 (8) | 0.0274 (2) | |
O2 | 0.5000 | 0.73329 (12) | 0.7500 | 0.0229 (3) | |
N3 | 0.5000 | 0.85988 (14) | 0.7500 | 0.0194 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0253 (5) | 0.0217 (5) | 0.0215 (5) | 0.0005 (4) | 0.0127 (4) | 0.0000 (4) |
N2 | 0.0216 (5) | 0.0213 (5) | 0.0177 (5) | 0.0016 (4) | 0.0094 (4) | 0.0007 (4) |
C1 | 0.0218 (6) | 0.0317 (7) | 0.0260 (6) | 0.0055 (5) | 0.0100 (5) | 0.0035 (5) |
C2 | 0.0198 (5) | 0.0183 (5) | 0.0196 (5) | −0.0012 (4) | 0.0094 (4) | 0.0005 (4) |
C3 | 0.0253 (6) | 0.0228 (6) | 0.0315 (6) | 0.0045 (5) | 0.0164 (5) | 0.0010 (5) |
C4 | 0.0216 (6) | 0.0215 (6) | 0.0269 (6) | 0.0036 (4) | 0.0089 (5) | 0.0029 (4) |
O1 | 0.0335 (5) | 0.0278 (5) | 0.0261 (5) | 0.0028 (4) | 0.0176 (4) | −0.0026 (3) |
O2 | 0.0258 (6) | 0.0211 (6) | 0.0238 (6) | 0.000 | 0.0123 (5) | 0.000 |
N3 | 0.0164 (6) | 0.0234 (7) | 0.0170 (6) | 0.000 | 0.0056 (5) | 0.000 |
N1—H1 | 0.83 (3) | C1—H1C | 0.90 (2) |
N1—C2 | 1.3247 (15) | C1—C2 | 1.4821 (16) |
N1—C3 | 1.3822 (17) | C3—H3 | 0.974 (19) |
N2—C2 | 1.3381 (15) | C3—C4 | 1.3504 (18) |
N2—H2 | 0.845 (19) | C4—H4 | 0.971 (18) |
N2—C4 | 1.3783 (16) | O1—N3 | 1.2433 (11) |
C1—H1A | 0.95 (2) | O2—N3 | 1.2774 (19) |
C1—H1B | 0.94 (2) | N3—O1i | 1.2433 (11) |
C2—N1—H1 | 125 (3) | N1—C2—N2 | 109.58 (10) |
C2—N1—C3 | 107.21 (10) | N1—C2—C1 | 125.45 (11) |
C3—N1—H1 | 128 (3) | N2—C2—C1 | 124.91 (11) |
C2—N2—H2 | 122.4 (13) | N1—C3—H3 | 121.6 (10) |
C2—N2—C4 | 108.41 (10) | C4—C3—N1 | 108.53 (11) |
C4—N2—H2 | 129.1 (13) | C4—C3—H3 | 129.9 (10) |
H1A—C1—H1B | 104.5 (17) | N2—C4—H4 | 123.6 (10) |
H1A—C1—H1C | 114.3 (18) | C3—C4—N2 | 106.26 (11) |
H1B—C1—H1C | 107.4 (19) | C3—C4—H4 | 130.1 (10) |
C2—C1—H1A | 109.7 (13) | O1—N3—O1i | 121.58 (14) |
C2—C1—H1B | 111.1 (12) | O1i—N3—O2 | 119.21 (7) |
C2—C1—H1C | 109.7 (14) | O1—N3—O2 | 119.21 (7) |
N1—C3—C4—N2 | −0.02 (14) | C3—N1—C2—C1 | 176.33 (12) |
C2—N1—C3—C4 | 0.57 (14) | C4—N2—C2—N1 | 0.92 (13) |
C2—N2—C4—C3 | −0.53 (14) | C4—N2—C2—C1 | −176.35 (11) |
C3—N1—C2—N2 | −0.91 (13) |
Symmetry code: (i) −x+1, y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.845 (19) | 2.594 (19) | 3.1837 (14) | 127.9 (15) |
N2—H2···O2 | 0.845 (19) | 2.06 (2) | 2.9031 (10) | 172.5 (18) |
N1—H1···N1ii | 0.83 (3) | 1.86 (3) | 2.678 (2) | 173 (4) |
Symmetry codes: (i) −x+1, y, −z+3/2; (ii) −x+1, y, −z+1/2. |
C4H7N2+·NO3− | Dx = 1.467 Mg m−3 |
Mr = 145.13 | Ga Kα radiation, λ = 1.34139 Å |
Orthorhombic, Pnma | Cell parameters from 9976 reflections |
a = 14.1402 (11) Å | θ = 5.2–60.7° |
b = 6.2297 (5) Å | µ = 0.70 mm−1 |
c = 7.4571 (6) Å | T = 110 K |
V = 656.89 (9) Å3 | Block, clear light colorless |
Z = 4 | 0.09 × 0.04 × 0.03 mm |
F(000) = 304 |
Bruker Venture Metaljet diffractometer | 817 independent reflections |
Radiation source: Metal Jet, Gallium Liquid Metal Jet Source | 761 reflections with I > 2σ(I) |
Helios MX Mirror Optics monochromator | Rint = 0.060 |
Detector resolution: 10.24 pixels mm-1 | θmax = 60.8°, θmin = 8.1° |
ω and φ scans | h = −16→18 |
Absorption correction: multi-scan (SADABS; Krause et al., 2015) | k = −8→8 |
Tmin = 0.471, Tmax = 0.752 | l = −9→9 |
13253 measured reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.049 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.146 | w = 1/[σ2(Fo2) + (0.0855P)2 + 0.2528P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
817 reflections | Δρmax = 0.22 e Å−3 |
68 parameters | Δρmin = −0.28 e Å−3 |
Experimental. X-ray crystallographic data for I were collected from a single crystal sample, which was mounted on a loop fiber. Data were collected using a Bruker Venture diffractometer equipped with a Photon 100 CMOS Detector, a Helios MX optics and a Kappa goniometer. The crystal-to-detector distance was 4.0 cm, and the data collection was carried out in 1024 x 1024 pixel mode. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1 | 0.75103 (14) | 0.2500 | 0.7473 (3) | 0.0489 (5) | |
H1 | 0.791 (3) | 0.2500 | 0.828 (5) | 0.104 (14)* | |
N2 | 0.62239 (12) | 0.2500 | 0.5968 (2) | 0.0383 (5) | |
H2 | 0.558 (2) | 0.2500 | 0.566 (4) | 0.065 (9)* | |
C1 | 0.6012 (2) | 0.2500 | 0.9290 (3) | 0.0581 (7) | |
H1A | 0.6415 | 0.2943 | 1.0295 | 0.087* | 0.5 |
H1B | 0.5768 | 0.1053 | 0.9515 | 0.087* | 0.5 |
H1C | 0.5483 | 0.3504 | 0.9170 | 0.087* | 0.5 |
C2 | 0.65719 (16) | 0.2500 | 0.7623 (3) | 0.0409 (5) | |
C3 | 0.77534 (16) | 0.2500 | 0.5686 (3) | 0.0493 (6) | |
H3 | 0.8376 | 0.2500 | 0.5208 | 0.059* | |
C4 | 0.69503 (16) | 0.2500 | 0.4755 (3) | 0.0448 (6) | |
H4 | 0.6892 | 0.2500 | 0.3486 | 0.054* | |
O1 | 0.42825 (10) | 0.2500 | 0.55858 (18) | 0.0449 (5) | |
O2 | 0.46812 (12) | 0.2500 | 0.2772 (2) | 0.0498 (5) | |
O3 | 0.32003 (10) | 0.2500 | 0.3546 (2) | 0.0482 (5) | |
N3 | 0.40563 (11) | 0.2500 | 0.3932 (2) | 0.0384 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0421 (10) | 0.0503 (11) | 0.0542 (11) | 0.000 | −0.0184 (8) | 0.000 |
N2 | 0.0319 (8) | 0.0507 (10) | 0.0324 (8) | 0.000 | −0.0023 (6) | 0.000 |
C1 | 0.0775 (18) | 0.0625 (15) | 0.0342 (11) | 0.000 | 0.0076 (10) | 0.000 |
C2 | 0.0430 (11) | 0.0460 (11) | 0.0337 (10) | 0.000 | −0.0045 (8) | 0.000 |
C3 | 0.0357 (11) | 0.0509 (13) | 0.0612 (14) | 0.000 | 0.0057 (9) | 0.000 |
C4 | 0.0448 (12) | 0.0522 (12) | 0.0374 (10) | 0.000 | 0.0064 (8) | 0.000 |
O1 | 0.0360 (8) | 0.0681 (10) | 0.0308 (7) | 0.000 | −0.0011 (5) | 0.000 |
O2 | 0.0449 (9) | 0.0686 (11) | 0.0359 (8) | 0.000 | 0.0092 (6) | 0.000 |
O3 | 0.0348 (7) | 0.0592 (10) | 0.0507 (9) | 0.000 | −0.0103 (6) | 0.000 |
N3 | 0.0344 (8) | 0.0485 (10) | 0.0323 (8) | 0.000 | −0.0005 (6) | 0.000 |
N1—H1 | 0.82 (4) | C1—H1C | 0.9800 |
N1—C2 | 1.332 (3) | C1—C2 | 1.474 (3) |
N1—C3 | 1.376 (3) | C3—H3 | 0.9500 |
N2—H2 | 0.94 (3) | C3—C4 | 1.331 (3) |
N2—C2 | 1.329 (2) | C4—H4 | 0.9500 |
N2—C4 | 1.369 (3) | O1—N3 | 1.274 (2) |
C1—H1A | 0.9800 | O2—N3 | 1.237 (2) |
C1—H1B | 0.9800 | O3—N3 | 1.244 (2) |
C2—N1—H1 | 128 (3) | N1—C2—C1 | 127.3 (2) |
C2—N1—C3 | 109.29 (19) | N2—C2—N1 | 106.91 (18) |
C3—N1—H1 | 122 (3) | N2—C2—C1 | 125.8 (2) |
C2—N2—H2 | 126.1 (18) | N1—C3—H3 | 126.5 |
C2—N2—C4 | 109.63 (18) | C4—C3—N1 | 106.98 (19) |
C4—N2—H2 | 124.3 (18) | C4—C3—H3 | 126.5 |
H1A—C1—H1B | 109.5 | N2—C4—H4 | 126.4 |
H1A—C1—H1C | 109.5 | C3—C4—N2 | 107.19 (19) |
H1B—C1—H1C | 109.5 | C3—C4—H4 | 126.4 |
C2—C1—H1A | 109.5 | O2—N3—O1 | 119.85 (17) |
C2—C1—H1B | 109.5 | O2—N3—O3 | 122.22 (18) |
C2—C1—H1C | 109.5 | O3—N3—O1 | 117.93 (16) |
N1—C3—C4—N2 | 0.000 (1) | C3—N1—C2—C1 | 180.000 (1) |
C2—N1—C3—C4 | 0.000 (1) | C4—N2—C2—N1 | 0.000 (1) |
C2—N2—C4—C3 | 0.000 (1) | C4—N2—C2—C1 | 180.000 (1) |
C3—N1—C2—N2 | 0.000 (1) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.82 (4) | 2.12 (4) | 2.894 (2) | 157 (4) |
N1—H1···O3i | 0.82 (4) | 2.41 (4) | 3.125 (3) | 147 (4) |
N2—H2···O1 | 0.94 (3) | 1.83 (3) | 2.760 (2) | 167 (3) |
N2—H2···O2 | 0.94 (3) | 2.50 (3) | 3.231 (2) | 135 (2) |
Symmetry code: (i) x+1/2, y, −z+3/2. |
Acknowledgements
The authors acknowledge the Cheikh Anta Diop University of Dakar (Sénégal), the Canada Foundation for Innovation and Université de Montréal for financial support.
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