research communications
N,N-bis(2-hydroxyethyl)glycine anion
solvothermal synthesis, thermogravimetric studies and DFT calculations of a five-coordinate cobalt(II) compound based on theaSchool of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, People's Republic of China, and bGuangxi Experiment Centre of Science and Technology, Guangxi University, Nanning, 530004, People's Republic of China
*Correspondence e-mail: zyl8289@126.com
The reaction of CoCl2·6H2O, N,N-bis(2-hydroxyethyl)glycine and triethylamine (Et3N) in ethanol solution under solvothermal conditions produced crystals of [N,N-bis(2-hydroxyethyl)glycinato]chloridocobalt(II), [Co(C6H12NO4)Cl]. The CoII ion is coordinated in a slightly distorted trigonal–bipyramidal environment which is defined by three O atoms occupying the equatorial plane and the N and Cl atoms in the apical sites. In the crystal, two types of O—H⋯O hydrogen bonds connect the molecules, forming a two-dimensional network parallel to (001). The molecular structure of the title compound confirms the findings of FTIR, elemental analysis, ESI–MS analysis and TG analysis. By using the density functional theory (DFT) (B3LYP) method with 6-31G(d) basis set, the molecular structure has been calculated and optimized.
Keywords: Five-coordinate transition metal; crystal structure; solvothermal synthesis; mononuclear; ESI–MS; DFT.
CCDC reference: 1504322
1. Chemical context
In recent years, coordination compounds have attracted a great deal of interest for their structural aesthetics and potential functional applications (Fujita et al., 2004). The design of molecular structures is highly influenced by factors such as the coordination nature of the metal ion, the coordinating ability and functionality of the organic ligands and the reaction conditions (Zhang et al., 2015; Yin et al., 2015). Hence, the prediction of is largely considered to be serendipitous except for simple compounds such as mononuclear molecules. The 3d7configuration of CoII is particularly suited for the construction of metal–organic compounds (Kurmoo, 2009). One of the interesting structural aspects of studying cobalt compared to nickel, iron or manganese is the range of coordination geometries – octahedral, tetrahedral, square–pyramidal, trigonal–bipyramidal and square–planar – which are all stable (Kurmoo, 2009). There are several coordination modes for the cobalt ion. The common mode is six-coordinate (Bryant et al., 2015; Artetxe et al., 2015), and only relatively few four-coordinate (Gupta et al., 2015) and five-coordinate (Lee et al., 2015) cobalt complexes have been recorded. Generally, five-coordinate compounds have two classical configurations, trigonal–bipyramidal and square–pyramidal, and the extent of each geometry each can be determined by the τ value (Addison et al., 1984).
The carboxylate unit is widely used in the synthesis of coordination compounds and is part of commonly used ligands. It is a good bridging group, favouring the formation of products (Zhou et al., 2009). Very recently, we have been investigating CoII compounds constructed from ligands containing carboxylate and hydroxyl groups, which usually form multinuclear and/or polymeric structures and show interesting magnetic behavior (Zhou et al., 2009; Zeng et al., 2010). Similarly, herein, we chose N,N-bis(2-hydroxyethyl)glycine (bicH3) containing two hydroxyl oxygen atoms, one carboxylate oxygen atom and one nitrogen atom, which can potentially coordinate to a metal ion as a tetradentate ligand (He et al., 1999). BicH3 contains the properties of both amino acid and amino alcohol as a result of the N-substituted amino, carboxyl, and two hydroxyl groups in the molecule. To the best of our knowledge, the crystal structures of metal–organic compounds with the bicH3 ligand have not been very well explored to date. Potential coordination modes for bicH2−, bicH2− and bic3− are shown in Fig. 1. In the course of our ongoing studies on CoII compounds containing ligands with carboxylate moieties, we have directly assembled the title compound [Co(bicH2)Cl], 1, using the flexible tetradentate ligand bicH3 and CoCl2·6H2O under solvothermal conditions.
2. Structural commentary
The molecular structure of the title compound is shown in Fig. 2. The CoII ion is five-coordinated by four atoms from the bicH2− ligand (one carboxylato oxygen atom, two hydroxyl oxygen atoms, one nitrogen atom) and one terminal chlorine atom in a slightly distorted trigonal–bipyramidal environment (τ = 0.94, τ = |α − β|/60, α and β being the two largest angles around the central atom; values for τ in perfect coordination geometries are 1.0 for trigonal–bipyramid and 0.0 for square–pyramidal). In a similar reported compound which was formed by bicH22− and a CuII ion, a five-coordinate mode was observed (He et al., 1999); the difference is that one nitrogen atom of benzimidazole or isoquinoline has replaced the terminal chloride ion in compound 1. In 1, the bond lengths around the CoII ion are Co1—N1 = 2.1626 (15), Co1—O1 = 2.0482 (13), Co1—O2 = 2.0463 (14), Co1—O3 = 2.0095 (14) and Co1—Cl1 =2.2701 (6) Å. The length of the Co—O(carboxylate) bond is shorter than that of Co—O(hydroxyl), which may be due to the difference between the electron density of carboxylate oxygen atoms and that of hydroxyl oxygen atoms (He et al., 1999). According to the total valence–charge balance and the bond lengths, we can conclude that cobalt is in +II.
3. Supramolecular features
In the crystal, two types of O—H⋯O hydrogen bonds (Table 1) connect the molecules, forming a two-dimensional network parallel to (001) (Fig. 3). The O—H groups behave as donors to the non-coordinating carboxylate oxygen atom of symmetry-related molecules. The hydroxy group containing O1 acts as a bifurcated O—H⋯(O,O) donor while caboxylate atom O4 is a bifurcated (O—H,O—H)⋯O acceptor.
4. Database survey
A search of the Cambridge Structural Database (CSD; Groom et al., 2016) was carried out for structures containing the bicH3 ligand. This revealed bicH3 coordinating to a lanthanide metal (Inomata et al., 2001), Cd and Na (Katsoulakou et al., 2011), Cu, Ni and Zn (Thakuria & Das, 2007; Liu et al., 2013; Lo & Ng, 2010), Re, Mn and Fe (Kirillov et al., 2005; Sun et al., 1997; Graham et al., 2009). A related structure with copper and bromide (Yamaguchi et al., 1991) shows a very similar mononuclear to the title compound. There are only a small number of reports for the ligand coordinating to Co (Funes et al., 2015; Zhao & Liu, 2010; Liu et al., 2015).
5. Synthesis and crystallization
The ligand bicH3 (0.5 mmol) in a ethanol solution (2 mL) was added to a ethanol solution (5 mL) of CoCl2·6H2O (1 mmol). 0.02 mL of triethylamine was added dropwise to the mixed solution and stirred for 15 min at room temperature. The reactants were sealed in a 12 mL Teflon-lined autoclave, heated at 413 K for three days and then cooled to room temperature at a rate of 10 K h−1. Purple single crystals (Fig. 4) were obtained along with purple powder. The crystals were picked out, washed with distilled water, and dried in air (yield ca 50.3% based on CoII). Analysis calculated (%) for C6H12ClCoNO4: C 28.30, H 3.93, N 5.50; Found C 28.31, H 3.95, N 5.54%. FTIR data for 1 (KBr, cm−1): 3383(m), 2964(w), 1593(s), 1434(m), 1407(m), 1309(w), 1058(w), 890(w).
6. ESI–MS spectroscopic analysis
The ESI mass spectra were recorded using an LCQ–FLEET 1, characterization of the molecule in solution was accomplished by ESI–MS experiments. For the methanol solution of 1, the ESI (Fig. 5) exhibits the main ion peak observed at an m/z of 254.93, which can be assigned as [Co(C6H11NO4)Cl]+ (fit: 254.970860). The observed m/z clearly matches the assigned formula as well as the simulated spectra. This suggests that compound 1 produced in solution was stable during the ionization process. ESI–MS can also be used to examine a series of inner-bridge replacement reactions for multinuclear Co compounds (Zhou et al., 2010; Hu et al., 2013), which is an important complement to ligand exchange, ion exchange, template exchange and supramolecular transformations (Chakrabarty et al., 2011; Miras et al., 2009). The study of the chemistry of coordination compounds by is an excellent tool to demonstrate the stability and existence of multinuclear moleculesin solution.
(Thermo). To give further evidence for the inner structure of compound7. TG analysis
The TG analysis was performed on Pyris Diamond TG/DTA. The appearance of the flexible polydentate ligands inspired us to investigate the thermal stability of the network. The crushed single-crystal samples were heated to 1073 K in an N2 atmosphere at a heating rate of 5 K min−1 (Fig. 6). The TGA curve for 1 shows that the framework begins to decompose at 413 K, and the 21.6% remaining weight is assuming to the mass loss percentage of cobalt (cal. 22.9%). One similar compound, [CuCd(bicH2(NO3)Cl2(H2O)]·H2O, constructed with bicH2 is quite unstable and begins to lose lattice water at 393 K (Liu et al., 2013). Other compounds synthesized using the same ligand also show mass loss below 413 K (Inomata et al., 2001), owing to the loss of coordinating water. However, another reported complex with five-coordinate cobalt begins to disintegrate at 669 K (Lee et al., 2015). In summary, the crystals synthesized using bicH22− tend to decompose at a relatively low temperature.
8. DFT calculations
All the calculations were performed by using the GAUSSIAN09 program package (Frisch et al., 2009). The molecular structure of the title compound in the ground state was optimized in vacuo without considering the solvent, and a basis set (b1) consisting of a standard LanL2DZ basis set (Dunning & Hay, 1976; Wadt & Hay, 1985; Hay & Wadt, 1985) for Co, while the other atoms, C, H, N, O were described by a standard 6-31G(d) set. To investigate the energy differences between the high-spin and low-spin states of the title compound, the ΔE of these two energy states was evaluated using the B3LYP/b1 method (Carabineiro et al., 2008; Saraçoğlu & Cukurovali, 2016). Vibrational frequencies were calculated for all stationary points to verify that each was a minimum (NIMAG = 0) on the surface.
To gain an insight of the electronic structures, bonding properties and relative stability of the two different spin ground states (S = 3/2 and 1/2) for compound 1, the calculations in the DFT method were investigated. The optimized geometries calculated for compound 1 are presented in Fig. 7. The structure of 1 presented an almost perfect trigonal–bipyramidal geometry by means of the X-ray diffraction. The chlorine and nitrogen atoms occupy the axial positions, while the equatorial plane is occupied by three oxygen atoms. According to the energies for the two calculated structures (see Supporting information), the X-ray structure determined for complex 1 should correspond to the complex with high-spin ground state. The result can also be indicated by the mean (δ) and maximum (Δ) absolute deviations obtained for the coordination distances (Co—X). For the high-spin form of complex 1, values of δ = 0.104 Å and Δ = 0.148 Å indicate a reasonable agreement. As for the high-spin ground state and the experimental value, the biggest difference for the bond lengths is found to be 0.148 Å for Co—N, similar to what has been observed in related CoII compounds (Carabineiro et al., 2008). The results of the schematic representation of both ground states supported its coordination behavior and the value of ΔE is 13.4 kcal mol−1, which shows that compound 1 can well exist stably. The cartesian coordinates for the two calculated structures are given in the Supporting information.
9. Refinement
Crystal data, data collection and structure . H atoms bonded to C atoms were placed in calculated positions with C—H = 0.97 Å and Uiso(H) = 1.2Ueq(C). Hydroxyl hydrogen atoms H1 and H2 were refined independently, H1 with a refined isotropic displacement parameter and H2 with Uiso(H) = 1.5Ueq(O).
details are summarized in Table 2Supporting information
CCDC reference: 1504322
https://doi.org/10.1107/S2056989016014596/lh5821sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989016014596/lh5821Isup5.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989016014596/lh5821sup3.tif
Supporting information file. DOI: https://doi.org/10.1107/S2056989016014596/lh5821sup4.pdf
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SIR2004 (Burla et al., 2007); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).[Co(C6H12NO4)Cl] | Dx = 1.818 Mg m−3 |
Mr = 256.55 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 9897 reflections |
a = 8.3925 (9) Å | θ = 2.6–26.4° |
b = 14.0939 (15) Å | µ = 2.10 mm−1 |
c = 15.8448 (17) Å | T = 296 K |
V = 1874.2 (3) Å3 | Prism, purple |
Z = 8 | 0.84 × 0.27 × 0.24 mm |
F(000) = 1048 |
Bruker APEXII CCD diffractometer | 1854 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
φ and ω scans | θmax = 26.4°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −10→10 |
Tmin = 0.512, Tmax = 0.604 | k = −17→17 |
15130 measured reflections | l = −19→19 |
1933 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.025 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | w = 1/[σ2(Fo2) + (0.030P)2 + 1.540P] where P = (Fo2 + 2Fc2)/3 |
S = 1.14 | (Δ/σ)max = 0.001 |
1933 reflections | Δρmax = 0.51 e Å−3 |
125 parameters | Δρmin = −0.43 e Å−3 |
3 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.41813 (3) | 0.62528 (2) | 0.09419 (2) | 0.02152 (10) | |
Cl1 | 0.15183 (6) | 0.60446 (4) | 0.07726 (4) | 0.04084 (15) | |
O1 | 0.46124 (15) | 0.51884 (10) | 0.17919 (8) | 0.0254 (3) | |
O2 | 0.42621 (16) | 0.75436 (10) | 0.15315 (9) | 0.0315 (3) | |
H2 | 0.3575 (17) | 0.7980 (10) | 0.1454 (15) | 0.047* | |
O3 | 0.48651 (16) | 0.61778 (10) | −0.02717 (8) | 0.0320 (3) | |
O4 | 0.68239 (18) | 0.63508 (9) | −0.11936 (9) | 0.0305 (3) | |
N1 | 0.67257 (18) | 0.64315 (11) | 0.10881 (9) | 0.0226 (3) | |
C1 | 0.6259 (2) | 0.50535 (15) | 0.20204 (13) | 0.0319 (4) | |
H1A | 0.6481 | 0.4381 | 0.2078 | 0.038* | |
H1B | 0.6469 | 0.5356 | 0.2559 | 0.038* | |
C2 | 0.7323 (2) | 0.54745 (14) | 0.13522 (13) | 0.0308 (4) | |
H2A | 0.8398 | 0.5533 | 0.1571 | 0.037* | |
H2B | 0.7353 | 0.5056 | 0.0866 | 0.037* | |
C3 | 0.5816 (2) | 0.79707 (15) | 0.15957 (15) | 0.0367 (5) | |
H3A | 0.5852 | 0.8407 | 0.2069 | 0.044* | |
H3B | 0.6066 | 0.8318 | 0.1084 | 0.044* | |
C4 | 0.6996 (2) | 0.71678 (15) | 0.17250 (13) | 0.0336 (4) | |
H4A | 0.8075 | 0.7408 | 0.1677 | 0.040* | |
H4B | 0.6865 | 0.6901 | 0.2285 | 0.040* | |
C5 | 0.6287 (2) | 0.63779 (12) | −0.04522 (12) | 0.0240 (4) | |
C6 | 0.7392 (2) | 0.66736 (15) | 0.02554 (11) | 0.0301 (4) | |
H6A | 0.8412 | 0.6359 | 0.0186 | 0.036* | |
H6B | 0.7571 | 0.7353 | 0.0226 | 0.036* | |
H1 | 0.432 (3) | 0.468 (2) | 0.1653 (18) | 0.054 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.01510 (14) | 0.02795 (15) | 0.02151 (15) | −0.00134 (9) | −0.00195 (9) | 0.00217 (9) |
Cl1 | 0.0166 (2) | 0.0604 (3) | 0.0455 (3) | −0.0060 (2) | −0.0050 (2) | 0.0169 (3) |
O1 | 0.0233 (6) | 0.0265 (7) | 0.0265 (7) | −0.0020 (5) | −0.0014 (5) | 0.0011 (5) |
O2 | 0.0269 (7) | 0.0294 (7) | 0.0383 (8) | 0.0047 (5) | −0.0040 (6) | −0.0023 (6) |
O3 | 0.0217 (7) | 0.0523 (9) | 0.0220 (7) | −0.0095 (6) | −0.0014 (5) | −0.0024 (6) |
O4 | 0.0336 (7) | 0.0355 (7) | 0.0223 (7) | −0.0109 (6) | 0.0038 (6) | −0.0020 (5) |
N1 | 0.0169 (7) | 0.0310 (8) | 0.0199 (7) | −0.0025 (6) | −0.0026 (6) | 0.0015 (6) |
C1 | 0.0263 (9) | 0.0363 (10) | 0.0330 (10) | 0.0024 (8) | −0.0079 (8) | 0.0062 (8) |
C2 | 0.0228 (9) | 0.0359 (10) | 0.0337 (10) | 0.0036 (8) | −0.0030 (8) | 0.0022 (8) |
C3 | 0.0367 (11) | 0.0290 (10) | 0.0445 (12) | −0.0038 (8) | −0.0073 (9) | −0.0057 (9) |
C4 | 0.0280 (10) | 0.0406 (11) | 0.0323 (10) | −0.0047 (8) | −0.0069 (8) | −0.0066 (8) |
C5 | 0.0247 (8) | 0.0235 (8) | 0.0238 (9) | −0.0031 (7) | −0.0006 (7) | 0.0009 (7) |
C6 | 0.0217 (8) | 0.0443 (11) | 0.0243 (9) | −0.0090 (8) | −0.0001 (7) | 0.0027 (8) |
Co1—Cl1 | 2.2701 (6) | C1—H1A | 0.9700 |
Co1—O1 | 2.0482 (13) | C1—H1B | 0.9700 |
Co1—O2 | 2.0463 (14) | C1—C2 | 1.507 (3) |
Co1—O3 | 2.0095 (14) | C2—H2A | 0.9700 |
Co1—N1 | 2.1626 (15) | C2—H2B | 0.9700 |
O1—C1 | 1.441 (2) | C3—H3A | 0.9700 |
O1—H1 | 0.79 (3) | C3—H3B | 0.9700 |
O2—H2 | 0.852 (9) | C3—C4 | 1.518 (3) |
O2—C3 | 1.440 (2) | C4—H4A | 0.9700 |
O3—C5 | 1.259 (2) | C4—H4B | 0.9700 |
O4—C5 | 1.259 (2) | C5—C6 | 1.514 (3) |
N1—C2 | 1.498 (2) | C6—H6A | 0.9700 |
N1—C4 | 1.465 (2) | C6—H6B | 0.9700 |
N1—C6 | 1.473 (2) | ||
O1—Co1—Cl1 | 99.03 (4) | C2—C1—H1B | 109.7 |
O1—Co1—N1 | 80.82 (6) | N1—C2—C1 | 110.66 (16) |
O2—Co1—Cl1 | 101.63 (4) | N1—C2—H2A | 109.5 |
O2—Co1—O1 | 110.19 (6) | N1—C2—H2B | 109.5 |
O2—Co1—N1 | 79.33 (6) | C1—C2—H2A | 109.5 |
O3—Co1—Cl1 | 99.28 (4) | C1—C2—H2B | 109.5 |
O3—Co1—O1 | 122.70 (6) | H2A—C2—H2B | 108.1 |
O3—Co1—O2 | 118.31 (6) | O2—C3—H3A | 110.4 |
O3—Co1—N1 | 80.02 (6) | O2—C3—H3B | 110.4 |
N1—Co1—Cl1 | 179.02 (5) | O2—C3—C4 | 106.80 (16) |
Co1—O1—H1 | 115 (2) | H3A—C3—H3B | 108.6 |
C1—O1—Co1 | 115.54 (11) | C4—C3—H3A | 110.4 |
C1—O1—H1 | 104 (2) | C4—C3—H3B | 110.4 |
Co1—O2—H2 | 123.6 (13) | N1—C4—C3 | 109.51 (16) |
C3—O2—Co1 | 115.72 (12) | N1—C4—H4A | 109.8 |
C3—O2—H2 | 108.8 (12) | N1—C4—H4B | 109.8 |
C5—O3—Co1 | 118.44 (12) | C3—C4—H4A | 109.8 |
C2—N1—Co1 | 104.78 (11) | C3—C4—H4B | 109.8 |
C4—N1—Co1 | 108.01 (12) | H4A—C4—H4B | 108.2 |
C4—N1—C2 | 113.16 (15) | O3—C5—C6 | 118.30 (16) |
C4—N1—C6 | 113.21 (15) | O4—C5—O3 | 123.00 (17) |
C6—N1—Co1 | 107.81 (11) | O4—C5—C6 | 118.69 (17) |
C6—N1—C2 | 109.38 (15) | N1—C6—C5 | 111.54 (15) |
O1—C1—H1A | 109.7 | N1—C6—H6A | 109.3 |
O1—C1—H1B | 109.7 | N1—C6—H6B | 109.3 |
O1—C1—C2 | 109.85 (15) | C5—C6—H6A | 109.3 |
H1A—C1—H1B | 108.2 | C5—C6—H6B | 109.3 |
C2—C1—H1A | 109.7 | H6A—C6—H6B | 108.0 |
Co1—O1—C1—C2 | −21.0 (2) | O3—C5—C6—N1 | 15.5 (3) |
Co1—O2—C3—C4 | −35.2 (2) | O4—C5—C6—N1 | −165.10 (16) |
Co1—O3—C5—O4 | 179.97 (13) | C2—N1—C4—C3 | −156.64 (17) |
Co1—O3—C5—C6 | −0.7 (2) | C2—N1—C6—C5 | 92.75 (18) |
Co1—N1—C2—C1 | −44.47 (17) | C4—N1—C2—C1 | 73.0 (2) |
Co1—N1—C4—C3 | −41.12 (19) | C4—N1—C6—C5 | −140.06 (17) |
Co1—N1—C6—C5 | −20.64 (19) | C6—N1—C2—C1 | −159.82 (15) |
O1—C1—C2—N1 | 44.4 (2) | C6—N1—C4—C3 | 78.2 (2) |
O2—C3—C4—N1 | 49.9 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O4i | 0.85 (1) | 1.79 (1) | 2.6271 (19) | 165 (2) |
O1—H1···O4ii | 0.79 (3) | 1.89 (3) | 2.6567 (19) | 165 (3) |
Symmetry codes: (i) x−1/2, −y+3/2, −z; (ii) −x+1, −y+1, −z. |
Acknowledgements
This work was supported by the NSFC (No. 21401030), GXNSF (No. 2014GXNSFBA118048), as well as the Guangxi Experiment Centre of Science and Technology (YXKT2014008). The computational resources are partly provided by Multifunction Computer Center of Guangxi University.
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