research communications
κ3N,N′,O}copper(II) from synchrotron data
of dichlorido{2-methyl-2-[(pyridin-2-ylmethyl)amino]propan-1-ol-aDaegu-Gyeongbuk Branch, Korea Institute of Science and Technology Information, 90 Yutongdanji-ro, Buk-gu, Daegu 41515, Republic of Korea, and bBeamline Department, Pohang Accelerator Laboratory, 80 Jigokro-127-beongil, Nam-Gu Pohang, Gyeongbuk 790-784, Republic of Korea
*Correspondence e-mail: dmoon@postech.ac.kr
The title compound, [CuCl2(C10H16N2O)], has been synthesized and characterized by synchrotron single-crystal X-ray diffraction and FT–IR spectroscopy. The 2-methyl-2-[(pyridin-2-ylmethyl)amino]propan-1-ol (mpmapOH) ligand, including pyridine, amine and hydroxy groups, was synthesized by the reaction of 2-amino-2-methylpropan-1-ol with pyridine-2-carbaldehyde and was characterized by NMR spectroscopy. In its CuII complex, the metal ion has a distorted square-pyramidal coordination geometry with two N and one O atom of the mpmapOH ligand and one chloride anion in the equatorial plane, and the second chloride in an axial position. The bond lengths involving the CuII ion range from 1.9881 (10) to 2.0409 (9) for the Cu—N and Cu—O bonds, and from 2.2448 (5) to 2.5014 (6) Å for the equatorial and axial Cu—Cl bonds, respectively. Intermolecular hydrogen bonds (N—H⋯Cl and O—H⋯Cl) and face-to-face π–π interactions stabilize the molecular structure and give rise to a two-dimensional supramolecular structure extending parallel to (101).
Keywords: crystal structure; hydrogen bond; π–π interactions; square-pyramidal geometry; synchrotron data.
CCDC reference: 1501276
1. Chemical context
Polyamine ligands have attracted much interest in the development of coordination and bio-inorganic chemistry because they can easily bind or interact with transition metal ions and form stable multifunctional metal complexes with significant potential applications in catalysis (Ahn et al., 2016), magnetic materials (Benelli et al., 2013) as well as pharmacology (Stringer et al., 2015). For example, various platinum complexes including polyamine ligands or their derivatives have been synthesized and investigated as potential anticancer agents, e. g. nedaplatin, heptaplatin, and lobaplatin (Kapdi & Fairlamb, 2014). In particular, polyamine derivatives containing hydroxyl groups can easily form various multinuclear metal complexes and supramolecular compounds because the hydroxyl groups can be fully or partially deprotonated and act as hydrogen-bonding donors and/or acceptors. For example, bpaeOH [bpaeOH = N,N-bis(2-pyridinmethyl)-2-aminoethanol] and H2pmide [H2pmide = N-(2-pyridylmethyl)iminodiethanol] ligands containing pyridine, amine and hydroxyl groups have been used to form multinuclear iron(III) complexes (Shin et al., 2014) and mixed-valence cobalt(II/III) complexes and have shown significant magnetic interactions and catalytic activities toward various and (Shin et al., 2011). Chloride ions in such complexes can easily bridge two metal ions, allowing the assembly of supramolecular compounds (Sabounchei et al., 2015).
Here, we report the synthesis and 10H16N2O), [Cu(mpmapOH)Cl2], (I).
of a copper(II) complex constructed from a versatile tridentate ligand, 2-methyl-2-[(2-pyridinylmethyl)amino]-1-propanol (mpmapOH; C2. Structural commentary
In the title compound (I) (Fig. 1), the copper(II) ion is five-coordinated by two nitrogen and one oxygen atoms from the mpmapOH ligand and by two chloride anions. The coordination geometry around the copper ion can be described as distorted square-pyramidal. The equatorial plane consists of the two nitrogen (N1 and N2) atoms and the hydroxyl group (O1) of the mpmapOH ligand and one chloride anion (Cl1). The coordination geometry is completed by an axial coordination of the second chloride anion (Cl2). The chloride anions coordinate in a cis position to each other. The Cu—LmpmapOH bond lengths are in the range 1.9881 (10) to 2.0409 (9) Å. The Cu—Cl bond lengths are 2.2448 (5), and 2.5014 (6) Å, respectively, with the larger value corresponding to the axial chloride ligand. The equatorial atom Cl1 lies 0.332 (1) Å above the equatorial plane, away from the axial chloride anion Cl2. The bite angles of the five-membered chelate rings involving C5, C6 and C7, C10 atoms are 82.92 (4) and 82.97 (4)°, respectively. The bond angles around the copper ion range from 82.92 (4) to 161.51 (4)°.
3. Supramolecular features
The two chloride anions form strong intermolecular hydrogen bonds with secondary amine and hydroxyl groups of adjacent mpmapOH ligands, giving rise to a polymeric chain along the b axis (Fig. 2 and Table 1) (Steed & Atwood, 2009). The hydrogen-bonded polymeric chains are linked by face-to-face π–π interactions between the pyridine groups of the mpmapOH ligand with a centroid-to-centroid distance of 3.764 (1) Å and an interplanar separation of 3.745 (1) Å. These interactions give rise to a two-dimensional supramolecular network with layers parallel to (101) (Fig. 2).
4. Database survey
A search of the Cambridge Structural Database (Version 5.37, Feb 2016 with two updates; Groom et al., 2016) did not show any related metal complexes with an mpmapOH ligand. The mpmapOH ligand was newly synthesized and the title compound is the first metal complex using mpampOH ligand for this research.
5. Synthesis and crystallization
The title compound (I) was prepared as follows. 2-Amino-2-methyl-1-propanol (4.90 g, 0.050 mol) was dissolved in MeOH (30 mL) followed by the addition of 2-pyridinecarboxaldehyde (5.41 g, 0.050 mol) under a nitrogen atmosphere. The resulting mixture was strirred at room temperature for three hours, and then NaBH4 (6.05 g, 0.16 mol) was added slowly. The mixture was again stirred at room temperature overnight. The yellow solution was evaporated to dryness under reduced pressure. The residue was dissolved in CH2Cl2 and the undissolved solids were filtered off. The solution was washed with H2O and dried over MgSO4. After removal of the and solvent, the mpmapOH ligand was obtained as a yellow oil. Yield: 6.67 g (74%). 1H NMR (500 MHz, DMSO): δ = 0.98 (s, 6H, NH–C(CH3)2–CH2), 3.22 (s, 2H, NH–C(CH3)2–CH2–OH), 3.75 (s, 2H, Py–CH2–NH), 7.21 (t, 1H, 5.9 Hz, Py–H), 7.42 (d, 1H, 7.8 Hz, Py–H), 7.71 (t, 1H, 7.65 Hz, Py–H), 8.45 (d, 1H, 4.75 Hz, Py–H). To an MeOH solution (10 mL) of CuCl2·H2O (200 mg, 1.173 mmol) was added dropwise an MeOH solution (10 mL) of mpmapOH (211 mg, 1.173 mmol); the color became dark blue, and the solution was stirred for 30 min at room temperature. Blue crystals of (I) were obtained by diffusion of diethyl ether into the dark-blue solution for several days, and were collected by filtration and washed with diethyl ether and dried in air. Yield: 247 mg (67%). FT–IR (ATR, cm−1): 3217, 3172, 3072, 2968, 1609, 1569, 1444, 1382, 1280, 1165, 1044, 984.
6. Refinement
Crystal data, data collection and structure . All C-bound H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C—H distances of 0.95–0.99 Å and an N—H distance of 1.0 Å. The position of the hydroxyl H atom was freely refined. All displacement parameters of H atoms Uiso(H) were set to 1.2 or 1.5Ueq of their respective parent atoms.
details are summarized in Table 2Supporting information
CCDC reference: 1501276
https://doi.org/10.1107/S2056989016013773/zl2674sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989016013773/zl2674Isup2.hkl
Data collection: PAL BL2D-SMDC (Shin et al., 2016); cell
HKL3000sm (Otwinowski & Minor, 1997); data reduction: HKL3000sm (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: DIAMOND (Putz & Brandenburg, 2014); software used to prepare material for publication: publCIF (Westrip, 2010).[CuCl2(C10H16N2O)] | F(000) = 644 |
Mr = 314.69 | Dx = 1.652 Mg m−3 |
Monoclinic, P21/n | Synchrotron radiation, λ = 0.610 Å |
a = 8.4470 (17) Å | Cell parameters from 24265 reflections |
b = 9.895 (2) Å | θ = 0.4–33.7° |
c = 15.254 (3) Å | µ = 1.40 mm−1 |
β = 97.13 (3)° | T = 100 K |
V = 1265.1 (5) Å3 | Block, blue |
Z = 4 | 0.12 × 0.10 × 0.09 mm |
ADSC Q210 CCD area detector diffractometer | 3556 reflections with I > 2σ(I) |
Radiation source: PLSII 2D bending magnet | Rint = 0.031 |
ω scan | θmax = 25.5°, θmin = 2.9° |
Absorption correction: empirical (using intensity measurements) (HKL3000 Scalepack; Otwinowski & Minor, 1997) | h = −11→11 |
Tmin = 0.809, Tmax = 0.887 | k = −13→13 |
11018 measured reflections | l = −21→21 |
3674 independent reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.022 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.061 | w = 1/[σ2(Fo2) + (0.0336P)2 + 0.6535P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.004 |
3674 reflections | Δρmax = 0.51 e Å−3 |
148 parameters | Δρmin = −0.90 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.28124 (2) | 0.60310 (2) | 0.68527 (2) | 0.00421 (5) | |
Cl1 | 0.19986 (4) | 0.77197 (3) | 0.59216 (2) | 0.01365 (7) | |
Cl2 | 0.02903 (3) | 0.50366 (3) | 0.72731 (2) | 0.01123 (7) | |
O1 | 0.31493 (9) | 0.73256 (8) | 0.79008 (5) | 0.00605 (14) | |
H1O1 | 0.3621 (18) | 0.8042 (12) | 0.7791 (11) | 0.007* | |
N1 | 0.32349 (11) | 0.46940 (9) | 0.59369 (6) | 0.00555 (16) | |
N2 | 0.43588 (10) | 0.48634 (9) | 0.76378 (6) | 0.00424 (15) | |
H2N2 | 0.3706 | 0.4292 | 0.7998 | 0.005* | |
C1 | 0.24193 (13) | 0.46123 (12) | 0.51215 (7) | 0.00921 (19) | |
H1 | 0.1599 | 0.5252 | 0.4952 | 0.011* | |
C2 | 0.27367 (14) | 0.36289 (13) | 0.45236 (7) | 0.0113 (2) | |
H2 | 0.2134 | 0.3580 | 0.3956 | 0.014* | |
C3 | 0.39622 (14) | 0.27116 (13) | 0.47736 (8) | 0.0121 (2) | |
H3 | 0.4234 | 0.2046 | 0.4369 | 0.015* | |
C4 | 0.47810 (13) | 0.27800 (12) | 0.56195 (8) | 0.0103 (2) | |
H4 | 0.5602 | 0.2149 | 0.5806 | 0.012* | |
C5 | 0.43811 (12) | 0.37864 (11) | 0.61898 (7) | 0.00587 (18) | |
C6 | 0.52329 (13) | 0.39249 (11) | 0.71132 (7) | 0.00744 (19) | |
H6A | 0.5317 | 0.3028 | 0.7402 | 0.009* | |
H6B | 0.6326 | 0.4270 | 0.7088 | 0.009* | |
C7 | 0.53496 (12) | 0.57791 (11) | 0.82728 (7) | 0.00457 (17) | |
C8 | 0.64485 (12) | 0.66575 (11) | 0.77880 (7) | 0.00812 (18) | |
H8A | 0.7355 | 0.6116 | 0.7647 | 0.012* | |
H8B | 0.6840 | 0.7418 | 0.8166 | 0.012* | |
H8C | 0.5856 | 0.7002 | 0.7241 | 0.012* | |
C9 | 0.63253 (14) | 0.49822 (12) | 0.90080 (7) | 0.00968 (19) | |
H9A | 0.5613 | 0.4402 | 0.9303 | 0.015* | |
H9B | 0.6878 | 0.5611 | 0.9438 | 0.015* | |
H9C | 0.7111 | 0.4422 | 0.8755 | 0.015* | |
C10 | 0.40927 (12) | 0.66639 (11) | 0.86317 (7) | 0.00648 (18) | |
H10A | 0.3397 | 0.6100 | 0.8960 | 0.008* | |
H10B | 0.4620 | 0.7348 | 0.9042 | 0.008* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.00445 (7) | 0.00330 (8) | 0.00458 (7) | 0.00238 (4) | −0.00066 (5) | −0.00020 (4) |
Cl1 | 0.02298 (14) | 0.00915 (13) | 0.00860 (12) | 0.00964 (10) | 0.00104 (10) | 0.00304 (9) |
Cl2 | 0.00569 (11) | 0.00647 (12) | 0.02190 (14) | 0.00083 (8) | 0.00314 (9) | −0.00072 (9) |
O1 | 0.0060 (3) | 0.0038 (3) | 0.0080 (3) | 0.0009 (2) | −0.0002 (3) | −0.0005 (3) |
N1 | 0.0066 (4) | 0.0049 (4) | 0.0051 (4) | 0.0009 (3) | 0.0002 (3) | −0.0002 (3) |
N2 | 0.0039 (3) | 0.0036 (4) | 0.0049 (4) | 0.0009 (3) | −0.0006 (3) | −0.0007 (3) |
C1 | 0.0101 (4) | 0.0106 (5) | 0.0063 (4) | 0.0002 (4) | −0.0013 (3) | 0.0003 (4) |
C2 | 0.0132 (5) | 0.0143 (5) | 0.0063 (4) | −0.0032 (4) | 0.0002 (4) | −0.0024 (4) |
C3 | 0.0117 (5) | 0.0143 (5) | 0.0107 (5) | −0.0017 (4) | 0.0025 (4) | −0.0074 (4) |
C4 | 0.0077 (4) | 0.0095 (5) | 0.0133 (5) | 0.0017 (4) | 0.0002 (4) | −0.0067 (4) |
C5 | 0.0048 (4) | 0.0057 (4) | 0.0070 (4) | −0.0004 (3) | 0.0005 (3) | −0.0020 (3) |
C6 | 0.0073 (4) | 0.0061 (5) | 0.0082 (4) | 0.0040 (3) | −0.0017 (4) | −0.0034 (3) |
C7 | 0.0044 (4) | 0.0045 (4) | 0.0044 (4) | 0.0000 (3) | −0.0009 (3) | −0.0010 (3) |
C8 | 0.0057 (4) | 0.0071 (4) | 0.0118 (5) | −0.0012 (3) | 0.0024 (3) | 0.0006 (4) |
C9 | 0.0106 (5) | 0.0094 (5) | 0.0076 (4) | 0.0016 (4) | −0.0044 (4) | 0.0005 (4) |
C10 | 0.0068 (4) | 0.0074 (4) | 0.0053 (4) | 0.0018 (3) | 0.0007 (3) | −0.0011 (3) |
Cu1—N1 | 1.9881 (10) | C3—H3 | 0.9500 |
Cu1—N2 | 2.0217 (10) | C4—C5 | 1.3913 (15) |
Cu1—O1 | 2.0409 (9) | C4—H4 | 0.9500 |
Cu1—Cl1 | 2.2448 (5) | C5—C6 | 1.5063 (16) |
Cu1—Cl2 | 2.5014 (6) | C6—H6A | 0.9900 |
O1—C10 | 1.4444 (13) | C6—H6B | 0.9900 |
O1—H1O1 | 0.840 (9) | C7—C9 | 1.5262 (15) |
N1—C5 | 1.3417 (14) | C7—C8 | 1.5278 (15) |
N1—C1 | 1.3474 (14) | C7—C10 | 1.5289 (14) |
N2—C6 | 1.4814 (13) | C8—H8A | 0.9800 |
N2—C7 | 1.5028 (14) | C8—H8B | 0.9800 |
N2—H2N2 | 1.0000 | C8—H8C | 0.9800 |
C1—C2 | 1.3825 (16) | C9—H9A | 0.9800 |
C1—H1 | 0.9500 | C9—H9B | 0.9800 |
C2—C3 | 1.3938 (17) | C9—H9C | 0.9800 |
C2—H2 | 0.9500 | C10—H10A | 0.9900 |
C3—C4 | 1.3880 (16) | C10—H10B | 0.9900 |
N1—Cu1—N2 | 82.92 (4) | N1—C5—C4 | 121.46 (10) |
N1—Cu1—O1 | 161.51 (4) | N1—C5—C6 | 116.87 (9) |
N2—Cu1—O1 | 82.97 (4) | C4—C5—C6 | 121.67 (10) |
N1—Cu1—Cl1 | 96.80 (3) | N2—C6—C5 | 110.48 (9) |
N2—Cu1—Cl1 | 157.64 (3) | N2—C6—H6A | 109.6 |
O1—Cu1—Cl1 | 91.74 (3) | C5—C6—H6A | 109.6 |
N1—Cu1—Cl2 | 98.69 (3) | N2—C6—H6B | 109.6 |
N2—Cu1—Cl2 | 97.56 (3) | C5—C6—H6B | 109.6 |
O1—Cu1—Cl2 | 94.96 (3) | H6A—C6—H6B | 108.1 |
Cl1—Cu1—Cl2 | 104.55 (2) | N2—C7—C9 | 111.65 (9) |
C10—O1—Cu1 | 109.28 (6) | N2—C7—C8 | 110.75 (8) |
C10—O1—H1O1 | 107.8 (12) | C9—C7—C8 | 110.15 (9) |
Cu1—O1—H1O1 | 113.4 (12) | N2—C7—C10 | 102.72 (8) |
C5—N1—C1 | 119.56 (10) | C9—C7—C10 | 111.62 (9) |
C5—N1—Cu1 | 115.43 (7) | C8—C7—C10 | 109.76 (9) |
C1—N1—Cu1 | 124.94 (8) | C7—C8—H8A | 109.5 |
C6—N2—C7 | 116.81 (8) | C7—C8—H8B | 109.5 |
C6—N2—Cu1 | 111.52 (7) | H8A—C8—H8B | 109.5 |
C7—N2—Cu1 | 107.72 (7) | C7—C8—H8C | 109.5 |
C6—N2—H2N2 | 106.7 | H8A—C8—H8C | 109.5 |
C7—N2—H2N2 | 106.7 | H8B—C8—H8C | 109.5 |
Cu1—N2—H2N2 | 106.7 | C7—C9—H9A | 109.5 |
N1—C1—C2 | 122.17 (11) | C7—C9—H9B | 109.5 |
N1—C1—H1 | 118.9 | H9A—C9—H9B | 109.5 |
C2—C1—H1 | 118.9 | C7—C9—H9C | 109.5 |
C1—C2—C3 | 118.43 (11) | H9A—C9—H9C | 109.5 |
C1—C2—H2 | 120.8 | H9B—C9—H9C | 109.5 |
C3—C2—H2 | 120.8 | O1—C10—C7 | 108.92 (8) |
C4—C3—C2 | 119.35 (11) | O1—C10—H10A | 109.9 |
C4—C3—H3 | 120.3 | C7—C10—H10A | 109.9 |
C2—C3—H3 | 120.3 | O1—C10—H10B | 109.9 |
C3—C4—C5 | 118.99 (11) | C7—C10—H10B | 109.9 |
C3—C4—H4 | 120.5 | H10A—C10—H10B | 108.3 |
C5—C4—H4 | 120.5 | ||
C5—N1—C1—C2 | −0.93 (17) | N1—C5—C6—N2 | 13.48 (13) |
Cu1—N1—C1—C2 | −177.79 (9) | C4—C5—C6—N2 | −167.61 (10) |
N1—C1—C2—C3 | −1.17 (18) | C6—N2—C7—C9 | −64.80 (12) |
C1—C2—C3—C4 | 2.37 (18) | Cu1—N2—C7—C9 | 168.82 (7) |
C2—C3—C4—C5 | −1.55 (18) | C6—N2—C7—C8 | 58.33 (12) |
C1—N1—C5—C4 | 1.81 (16) | Cu1—N2—C7—C8 | −68.04 (9) |
Cu1—N1—C5—C4 | 178.96 (9) | C6—N2—C7—C10 | 175.47 (8) |
C1—N1—C5—C6 | −179.28 (10) | Cu1—N2—C7—C10 | 49.09 (8) |
Cu1—N1—C5—C6 | −2.13 (12) | Cu1—O1—C10—C7 | 37.17 (9) |
C3—C4—C5—N1 | −0.56 (17) | N2—C7—C10—O1 | −56.79 (10) |
C3—C4—C5—C6 | −179.42 (11) | C9—C7—C10—O1 | −176.54 (8) |
C7—N2—C6—C5 | −142.45 (9) | C8—C7—C10—O1 | 61.04 (11) |
Cu1—N2—C6—C5 | −17.98 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···Cl2i | 0.84 (1) | 2.19 (1) | 3.0151 (10) | 170 (2) |
N2—H2N2···Cl1ii | 1.00 | 2.40 | 3.3568 (11) | 161 |
Symmetry codes: (i) −x+1/2, y+1/2, −z+3/2; (ii) −x+1/2, y−1/2, −z+3/2. |
Acknowledgements
This work was supported by the Basic Science Research Program of the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (NRF-2014R1A1A2058815). The X-ray crystallography BL2D-SMC beamline at PLS-II is supported in part by MSIP and POSTECH.
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