research communications
and Hirshfeld surface analysis of 1-carboxy-2-(3,4-dihydroxyphenyl)ethan-1-aminium bromide 2-ammonio-3-(3,4-dihydroxyphenyl)propanoate
aCrystal Growth Laboratory, PG and Research Department of Physics, Periyar EVR Government College (Autonomous), Tiruchirappalli 620 023, India, bLaboratorio de Polímeros, Centro de Química Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla (BUAP), Complejo de Ciencias, ICUAP, Edif. 103H, 22 Sur y San Claudio, C.P. 72570 Puebla, Puebla, Mexico, cCrystal Growth and Thin Film Laboratory, Department of Physics and Nanotechnology, SRM University, Kattankulathur 603 203, India, and dBiomolecular Crystallography Laboratory, Department of Bioinformatics, School of Chemical and Biotechnology, SASTRA University, Thanjavur 613 401, India
*Correspondence e-mail: balacrystalgrowth@gmail.com, thamu@scbt.sastra.edu
In the title molecular salt, C9H12NO4+·Br−·C9H11NO4, one of the dopa molecules is in the cationic form in which the α-amino group is protonated and the α-carboxylic acid group is uncharged, while the second dopa molecule is in the zwitterion form. The Br− anion occupies a special position and is located on a twofold rotation axis. The two dopa molecules are interconnected by short O—H⋯O hydrogen bonds. In the crystal, the various units are linked by O—H⋯O, N—H⋯Br and N—H⋯O hydrogen bonds, forming a three-dimensional framework. The title compound was refined as an with an parameter of 0.023 (8).
Keywords: crystal structure; dopa; cyclic N—H⋯Br hydrogen bonds; hydrogen bonding; Hirshfeld surfaces.
CCDC reference: 1507715
1. Chemical context
An aromatic amino acid enzyme hydroxylase converts L-tyrosine into L-dopa (L-3,4-dihydroxyphenylalanine). After conversion, L-dopa acts as a precursor for the neurotransmitters dopamine, norepinephrine and epinephrine. The L-dopa molecule is also effectively used in the symptomatic treatment of Parkinson's disease (Chan et al., 2012). In view of this interest, we have crystallized the title salt and report herein on its The hydrogen-bonding pattern and the relative contributions of various intermolecular interactions present are compared with the closely related chloride counterpart reported on earlier (Jandacek & Earle, 1971; Mostad & Rømming, 1974).
2. Structural commentary
The , is composed of a Br− anion located on a twofold rotation axis, a dopa molecule in the zwitterionic form and a cationic dopa molecule. In the latter, the α-amino group is protonated and carries a positive charge and the hydrogen atom (H4O) of the α-carboxylic acid group is located on a general position and was refined with 50% occupancy.
of the title salt, Fig. 1The crystal structures of L-dopa (Mostad et al., 1971) and its hydrochloride form (Jandacek & Earle, 1971; Mostad & Rømming, 1974) have been reported. Both of these compounds crystallized in the monoclinic P21. In the of L-dopa HCl, the α-amino group is protonated and the α-carboxylic acid is neutral. The stoichiometry between the cation and the Cl− anion is 1:1. The authors of these structures concluded that L-dopa exists as the S enantiomer, based on the R factor and the effects of However, the deposited coordinates for these structures belong to the R configuration. Therefore, the L-dopa HCl structure was inverted and used for superposition with one of the dopa molecules of the title compound. These structures superimpose well, with an r.m.s. deviation of 0.045 Å (Fig. 2).
3. Supramolecular features
The structure of the title compound features a network of intermolecular N—H⋯Br, N—H⋯O and O—H⋯O hydrogen bonds (Table 1), forming a three-dimensional framework. The cationic dopa molecules form dimers in which the carboxylic acid groups (O4) of the dopa molecules are interconnected via a short O—H⋯O hydrogen bond and the dimers are arranged as ribbons propagating along the b axis (Fig. 3). The protonated amino group forms three hydrogen bonds; two of them with the Br− anions and one with the carbonyl oxygen atom, O3, of the carboxylic acid group. The dopa molecules aggregate in a head-to-tail sequence of the type ⋯NH3+—CHR—COO−⋯NH3+—CHR—COO−⋯, in which the α-amino atom, N1, and the α-carboxylate atom O3 form a hydrogen-bonded peptide-like arrangement (layers), as observed in many amino acid–carboxylic acid complexes (Sharma et al., 2006; Selvaraj et al., 2007). Adjacent layers are interconnected by short O—H⋯O hydrogen bonds. These two interactions combine to form an R44(18) ring motif (Fig. 4). Similar interactions are observed in dopa and its HCl form (Mostad et al., 1971; Jandacek & Earle, 1971; Mostad & Rømming, 1974).
The amino group (via H1A and H1B) of the cationic dopa molecule participates in intermolecular N—H⋯Br interactions with two different Br− anions (Table 1). These interactions interconnect the cations and anions into a cyclic motif that can be described as an R24(8) ring and it runs parallel to the b axis (Fig. 5). This pattern is also observed in the of L-dopa·HCl, where two intermolecular N—H⋯Cl hydrogen bonds link the cations and anions into a chain. There, adjacent chains are interconnected through O—H⋯Cl hydrogen bonds (carboxylic acid⋯Cl).
One of the hydroxy groups (O1—H1O) is involved in an intermolecular O—H⋯O hydrogen bond with the carbonyl oxygen (O3) of the dopa molecule. This interaction links the dopa molecules into a C(9) chain. The other hydroxy (O2—H2O) group participates in bifurcated hydrogen bonds with two different hydroxy O atoms (O1 and O2) of adjacent dopa layers. The side chain of the dopa molecules in one layer is interconnected by the side chain of the dopa molecules in the adjacent layer through these interactions (Fig. 6). These interactions are also observed in the dopa hydrochloride structure.
4. Hirshfeld surface analysis
The Hirshfeld surfaces (HS) mapped with dnorm and 2D fingerprint plots were generated using the program CrystalExplorer (Wolff et al., 2012). The two different orientations of the HS diagram for complete dopa molecules along with Br− anion are shown in Fig. 7. The two-dimensional fingerprint plots are illustrated in Fig. 8. The HS analysis suggests that the intermolecular O⋯H contacts contribute most (41.4%) to the crystal packing compared to other contacts. For example, the relative contributions of H⋯H, C⋯H and H⋯Br contacts are 29, 18.6 and 6.1%, respectively, with regard to the complete unit of the dopa molecule. Concerning the Br− anion, the relative contributions of H⋯Br and O⋯Br contacts are 64.1 and 10.2%, respectively.
In the dopa HCl structure, the relative contributions of O⋯H, H⋯H, C⋯H and H⋯Cl contacts are 40.5, 25.2, 17.1 and 14.1%, respectively, with respect to the cationic dopa molecule. It is of interest to note that O⋯H and H⋯H contacts are reduced by 1.1 and 3.8%, respectively, when compared to the title salt. Concerning the Cl− anion, the relative contribution of H⋯Cl contacts is 90.4%. This is approximately 26% higher compared to the relative contributions of H⋯Br contacts in the title salt.
5. Synthesis and crystallization
L-dopa and HBr (1:1 molar ratio) were dissolved in double-distilled water and stirred well for 4 h. The homogeneous solution was filtered and the filtrate allowed to evaporate slowly. Colourless block-like crystals were harvested after a growth period of two weeks.
6. Refinement
Crystal data, data collection and structure . The amino and carboxylic acid H atoms were located in a difference Fourier map and freely refined. The OH and C-bound H atoms were included in calculated positions and treated as riding atoms: C—H = 0.93–0.98 Å, O—H = 0.82 Å with Uiso(H) = 1.2Ueq(C) and Uiso(H) = 1.5Ueq(O). The title compound was refined as an parameter = 0.023 (8).
details are summarized in Table 2
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Supporting information
CCDC reference: 1507715
https://doi.org/10.1107/S2056989016015425/su5328sup1.cif
contains datablocks I, Global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989016015425/su5328Isup2.hkl
Data collection: APEX2 (Bruker, 2004); cell
APEX2 (Bruker, 2004) and SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004) and XPREP (Bruker, 2004); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015) and publCIF (Westrip, 2010).C9H12NO4+·Br−·C9H11NO4 | F(000) = 488 |
Mr = 475.29 | Dx = 1.616 Mg m−3 |
Monoclinic, I2 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.1456 (3) Å | Cell parameters from 4553 reflections |
b = 5.6385 (2) Å | θ = 2.4–32.1° |
c = 28.2561 (10) Å | µ = 2.16 mm−1 |
β = 94.147 (2)° | T = 293 K |
V = 976.57 (7) Å3 | Block, colourless |
Z = 2 | 0.30 × 0.25 × 0.25 mm |
Bruker Kappa APEXII CCD diffractometer | 2421 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.024 |
ω and φ scan | θmax = 36.3°, θmin = 2.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −8→8 |
Tmin = 0.562, Tmax = 0.619 | k = −7→9 |
8138 measured reflections | l = −37→37 |
2827 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.026 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.056 | w = 1/[σ2(Fo2) + (0.0178P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max < 0.001 |
2827 reflections | Δρmax = 0.37 e Å−3 |
151 parameters | Δρmin = −0.31 e Å−3 |
1 restraint | Absolute structure: Refined as an inversion twin |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.023 (8) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refined as a 2-component inversion twin. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.4002 (2) | 1.2639 (3) | 0.32975 (6) | 0.0314 (3) | |
H1O | 0.4444 | 1.3490 | 0.3519 | 0.047* | |
O2 | 0.3013 (2) | 0.9618 (3) | 0.26190 (5) | 0.0296 (3) | |
H2O | 0.2781 | 0.8520 | 0.2432 | 0.044* | |
O3 | 1.4783 (2) | 0.5473 (3) | 0.40977 (5) | 0.0317 (4) | |
O4 | 1.3241 (2) | 0.6326 (4) | 0.47670 (4) | 0.0279 (3) | |
H4O | 1.446 (6) | 0.614 (10) | 0.4922 (15) | 0.021 (11)* | 0.5 |
N1 | 0.9218 (2) | 0.6239 (5) | 0.43861 (5) | 0.0198 (3) | |
H1A | 0.943 (4) | 0.765 (6) | 0.4564 (11) | 0.033 (8)* | |
H1B | 0.927 (4) | 0.503 (5) | 0.4600 (9) | 0.020 (6)* | |
H1C | 0.788 (4) | 0.613 (7) | 0.4245 (8) | 0.042 (6)* | |
C1 | 0.8776 (3) | 0.8691 (4) | 0.34526 (6) | 0.0209 (4) | |
C2 | 0.7366 (3) | 1.0550 (4) | 0.35295 (7) | 0.0227 (4) | |
H2 | 0.7713 | 1.1616 | 0.3775 | 0.027* | |
C3 | 0.5451 (3) | 1.0840 (3) | 0.32468 (6) | 0.0198 (4) | |
C4 | 0.4911 (3) | 0.9215 (4) | 0.28859 (6) | 0.0205 (4) | |
C5 | 0.6293 (3) | 0.7354 (4) | 0.28093 (7) | 0.0248 (4) | |
H5 | 0.5935 | 0.6270 | 0.2568 | 0.030* | |
C6 | 0.8220 (3) | 0.7097 (4) | 0.30924 (7) | 0.0245 (4) | |
H6 | 0.9148 | 0.5838 | 0.3039 | 0.029* | |
C7 | 1.0906 (3) | 0.8400 (4) | 0.37490 (7) | 0.0230 (4) | |
H7A | 1.1131 | 0.9771 | 0.3954 | 0.028* | |
H7B | 1.2091 | 0.8349 | 0.3540 | 0.028* | |
C8 | 1.0982 (2) | 0.6168 (5) | 0.40531 (6) | 0.0183 (3) | |
H8 | 1.0753 | 0.4786 | 0.3845 | 0.022* | |
C9 | 1.3203 (3) | 0.5942 (4) | 0.43256 (6) | 0.0195 (4) | |
Br1 | 1.0000 | 0.13069 (5) | 0.5000 | 0.05492 (14) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0287 (8) | 0.0279 (8) | 0.0363 (9) | 0.0055 (7) | −0.0067 (7) | −0.0073 (7) |
O2 | 0.0219 (7) | 0.0347 (9) | 0.0306 (8) | −0.0001 (6) | −0.0101 (6) | −0.0027 (7) |
O3 | 0.0150 (6) | 0.0536 (11) | 0.0260 (7) | 0.0049 (6) | −0.0012 (5) | −0.0099 (7) |
O4 | 0.0154 (6) | 0.0493 (8) | 0.0180 (6) | 0.0013 (9) | −0.0051 (5) | −0.0025 (10) |
N1 | 0.0134 (7) | 0.0274 (7) | 0.0183 (7) | −0.0010 (9) | −0.0006 (5) | 0.0023 (10) |
C1 | 0.0184 (9) | 0.0280 (10) | 0.0159 (9) | −0.0020 (8) | −0.0010 (7) | 0.0059 (7) |
C2 | 0.0241 (10) | 0.0240 (9) | 0.0193 (9) | −0.0038 (8) | −0.0029 (7) | −0.0005 (7) |
C3 | 0.0199 (9) | 0.0199 (13) | 0.0195 (8) | −0.0005 (7) | 0.0011 (7) | 0.0028 (7) |
C4 | 0.0172 (9) | 0.0260 (10) | 0.0180 (9) | −0.0024 (8) | −0.0017 (7) | 0.0046 (8) |
C5 | 0.0265 (10) | 0.0280 (10) | 0.0193 (9) | −0.0016 (9) | −0.0018 (8) | −0.0040 (8) |
C6 | 0.0217 (10) | 0.0292 (10) | 0.0225 (10) | 0.0054 (8) | 0.0001 (8) | 0.0005 (8) |
C7 | 0.0169 (9) | 0.0307 (11) | 0.0207 (9) | −0.0045 (8) | −0.0035 (7) | 0.0072 (8) |
C8 | 0.0128 (7) | 0.0256 (9) | 0.0163 (7) | 0.0001 (9) | −0.0011 (6) | 0.0009 (10) |
C9 | 0.0149 (8) | 0.0232 (13) | 0.0197 (8) | 0.0002 (8) | −0.0032 (6) | −0.0022 (8) |
Br1 | 0.1055 (3) | 0.01895 (14) | 0.03896 (18) | 0.000 | −0.00415 (18) | 0.000 |
O1—C3 | 1.364 (2) | C1—C7 | 1.511 (3) |
O1—H1O | 0.8200 | C2—C3 | 1.384 (3) |
O2—C4 | 1.362 (2) | C2—H2 | 0.9300 |
O2—H2O | 0.8200 | C3—C4 | 1.393 (3) |
O3—C9 | 1.232 (2) | C4—C5 | 1.377 (3) |
O4—C9 | 1.265 (2) | C5—C6 | 1.388 (3) |
O4—H4O | 0.85 (4) | C5—H5 | 0.9300 |
N1—C8 | 1.486 (2) | C6—H6 | 0.9300 |
N1—H1A | 0.95 (3) | C7—C8 | 1.523 (3) |
N1—H1B | 0.91 (3) | C7—H7A | 0.9700 |
N1—H1C | 0.89 (3) | C7—H7B | 0.9700 |
C1—C6 | 1.382 (3) | C8—C9 | 1.523 (2) |
C1—C2 | 1.387 (3) | C8—H8 | 0.9800 |
C3—O1—H1O | 109.5 | C4—C5—C6 | 119.94 (19) |
C4—O2—H2O | 109.5 | C4—C5—H5 | 120.0 |
C9—O4—H4O | 116 (3) | C6—C5—H5 | 120.0 |
C8—N1—H1A | 106.1 (17) | C1—C6—C5 | 120.78 (19) |
C8—N1—H1B | 114.1 (15) | C1—C6—H6 | 119.6 |
H1A—N1—H1B | 106.3 (17) | C5—C6—H6 | 119.6 |
C8—N1—H1C | 114.1 (14) | C1—C7—C8 | 113.12 (16) |
H1A—N1—H1C | 113 (3) | C1—C7—H7A | 109.0 |
H1B—N1—H1C | 103 (3) | C8—C7—H7A | 109.0 |
C6—C1—C2 | 118.87 (18) | C1—C7—H7B | 109.0 |
C6—C1—C7 | 119.72 (18) | C8—C7—H7B | 109.0 |
C2—C1—C7 | 121.41 (18) | H7A—C7—H7B | 107.8 |
C3—C2—C1 | 120.92 (18) | N1—C8—C7 | 109.9 (2) |
C3—C2—H2 | 119.5 | N1—C8—C9 | 110.50 (14) |
C1—C2—H2 | 119.5 | C7—C8—C9 | 110.12 (18) |
O1—C3—C2 | 124.17 (17) | N1—C8—H8 | 108.8 |
O1—C3—C4 | 116.33 (17) | C7—C8—H8 | 108.8 |
C2—C3—C4 | 119.50 (17) | C9—C8—H8 | 108.8 |
O2—C4—C5 | 123.61 (18) | O3—C9—O4 | 126.40 (17) |
O2—C4—C3 | 116.40 (17) | O3—C9—C8 | 117.71 (15) |
C5—C4—C3 | 119.98 (18) | O4—C9—C8 | 115.85 (15) |
C6—C1—C2—C3 | −1.1 (3) | C7—C1—C6—C5 | −178.73 (18) |
C7—C1—C2—C3 | 178.05 (17) | C4—C5—C6—C1 | 0.1 (3) |
C1—C2—C3—O1 | −179.13 (18) | C6—C1—C7—C8 | −66.3 (2) |
C1—C2—C3—C4 | 1.3 (3) | C2—C1—C7—C8 | 114.5 (2) |
O1—C3—C4—O2 | 0.9 (2) | C1—C7—C8—N1 | −60.3 (2) |
C2—C3—C4—O2 | −179.49 (16) | C1—C7—C8—C9 | 177.70 (16) |
O1—C3—C4—C5 | 179.62 (17) | N1—C8—C9—O3 | 168.4 (2) |
C2—C3—C4—C5 | −0.7 (3) | C7—C8—C9—O3 | −70.0 (3) |
O2—C4—C5—C6 | 178.75 (18) | N1—C8—C9—O4 | −13.5 (3) |
C3—C4—C5—C6 | 0.1 (3) | C7—C8—C9—O4 | 108.1 (2) |
C2—C1—C6—C5 | 0.4 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O3i | 0.82 | 1.98 | 2.782 (2) | 166 |
O2—H2O···O1ii | 0.82 | 2.32 | 3.004 (2) | 142 |
O2—H2O···O2ii | 0.82 | 2.26 | 2.9557 (8) | 144 |
O4—H4O···O4iii | 0.85 (4) | 1.61 (4) | 2.449 (2) | 169 (6) |
N1—H1A···Br1iv | 0.95 (3) | 2.41 (3) | 3.359 (3) | 179 (3) |
N1—H1B···Br1 | 0.91 (3) | 2.41 (3) | 3.295 (3) | 164 (2) |
N1—H1C···O3v | 0.89 (3) | 1.95 (3) | 2.821 (2) | 164 (3) |
Symmetry codes: (i) x−1, y+1, z; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+3, y, −z+1; (iv) x, y+1, z; (v) x−1, y, z. |
Acknowledgements
TB acknowledges the Council of Scientific and Industrial Research (CSIR), India for providing financial support [project ref. No. 03 (1314)/14/EMR-II dt.16–04-14]. ST is extremely grateful to the management of SASTRA University for their encouragement and financial support (Professor TRR fund), and also thanks the DST–SERB (SB/YS/LS-19/2014) for research funding.
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