research communications
2-[(4-Chlorophenyl)selanyl]-3,4-dihydro-2H-benzo[h]chromene-5,6-dione: and Hirshfeld analysis
aDepartmento de Química, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil, bDepartamento de Engenharia Química, Centro Universitário da FEI, 09850-901, São Bernardo do Campo, São Paulo, Brazil, cDepartment of Physics, Bhavan's Sheth R. A. College of Science, Ahmedabad, Gujarat 380 001, India, and dCentre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
*Correspondence e-mail: julio@power.ufscar.br
The title organoselenium compound, C19H13ClO3Se {systematic name: 2-[(4-chlorophenyl)selanyl]-2H,3H,4H,5H,6H-naphtho[1,2-b]pyran-5,6-dione}, has the substituted 2-pyranyl ring in a half-chair conformation with the methylene-C atom bound to the methine-C atom being the flap atom. The dihedral angle between the two aromatic regions of the molecule is 9.96 (9)° and indicates a step-like conformation. An intramolecular Se⋯O interaction of 2.8122 (13) Å is noted. In the crystal, π–π contacts between naphthyl rings [inter-centroid distance = 3.7213 (12) Å] and between naphthyl and chlorobenzene rings [inter-centroid distance = 3.7715 (13) Å], along with C—Cl⋯π(chlorobenzene) contacts, lead to supramolecular layers parallel to the ab plane, which are connected into a three-dimensional architecture via methylene-C—H⋯O(carbonyl) interactions. The contributions of these and other weak contacts to the Hirshfeld surface is described.
Keywords: crystal structure; selenium; pyran derivative; C—Cl⋯π interactions; Hirshfeld surface analysis.
CCDC reference: 1551641
1. Chemical context
The natural product, β-lapachone (see Scheme) can be isolated from the bark of the lapacho tree found in Central and South American countries (see: https://www.beta-lapachone.com/). It exhibits biological activities in the context of cancer (Park et al. 2014), being known to induce apoptotic cell-death pathways in a number of cancer cell lines, including breast cancer (Schaffner-Sabba et al., 1984), leukaemia (Chau et al., 1998) and prostate cancer (Li et al., 1995). In an allied application, β-lapachone can be used as a sensitizer in radiotherapy on prostrate (Suzuki et al., 2006) and colon (Kim et al., 2005) cancer cells.
Compounds of the bio-essential element selenium, found in amino acids such as selenocysteine and selenomethionine, are known to hold potential as pharmaceutical agents (Tiekink, 2012), including in the realm of anti-cancer drugs (Seng & Tiekink, 2012). A key aspect of developing metal-based drugs is to incorporate a heavy element into the structure of a biologically active organic molecule and with this in mind, it was thought of interest to attempt to incorporate selenium into the structure of β-lapachone. This was attempted by reacting lawsone, paraformaldehyde and (4-chlorophenyl)(ethenyl)selane, as detailed in Synthesis and crystallization. Two major products were isolated, i.e. derivatives of α-lapachone and β-lapachone. The latter, hereafter (I), could be crystallized and was subjected to an X-ray structure determination along with an analysis of its Hirshfeld surface in order to obtain more information on the molecular packing. The results of this study are reported herein.
2. Structural commentary
The substituted 2-pyranyl ring in (I) (Fig. 1) adopts a half-chair conformation with the C13 atom lying 0.620 (3) Å above the plane through the remaining five atoms (r.m.s. deviation = 0.0510 Å). The 12 atoms comprising the naphthalene-1,2-dione ring system are almost coplanar, with an r.m.s. deviation of 0.0152 Å. This plane forms a dihedral angle of 9.96 (9)° with the chlorobenzene ring bound to the selanyl atom, indicating a near parallel disposition and a step-like arrangement between the aromatic substituents about the 2-pyranyl ring. An intramolecular Se⋯O interaction of 2.8122 (13) Å is noted; this observation is discussed further in the Database survey.
3. Supramolecular features
In the molecular packing of (I), both rings of the naphthyl residues of centrosymmetrically related molecules form close π–π contacts, i.e. Cg(C2–C4/C9–C11)⋯Cg(C3–C8)i = 3.7213 (12) Å for an angle of inclination = 0.72 (9)° and (i) −x, −y, −z. Two types of interactions connect centrosymmetric aggregates into a supramolecular layer parallel to the ab plane (Fig. 2a). Thus, π–π interactions between naphthyl and chlorobenzene rings are formed, [Cg(C3–C8)⋯Cg(C14–C19)ii = 3.7715 (13) Å with an angle of inclination = 9.95 (10)° and (ii) −1 + x, y, z] along with C—Cl⋯π(chlorobenzene) contacts between centrosymmetrically related rings (Table 1). Connections between layers are of the type methylene-C—H⋯O(carbonyl) (Table 1) to consolidate the three-dimensional packing (Fig. 2b).
4. Hirshfeld surface analysis
The Hirshfeld surfaces calculated on the structure of (I) also provide insight into the intermolecular interactions; the calculation was performed as in a recent publication (Jotani et al., 2016). The presence of bright-red spots appearing near the naphthyl-C7 and phenyl-C18 atoms on the Hirshfeld surface mapped over dnorm in Fig. 3 are due to a short interatomic C⋯C contact (see Table 2), significant in the crystal of (I). The absence of characteristic red spots near other atoms on the dnorm-mapped Hirshfeld surface confirms the absence of conventional hydrogen bonds in the structure except for a weak C—H⋯O interaction as given in Table 1. The blue and red regions corresponding to positive and negative electrostatic potentials on the Hirshfeld surface mapped over electrostatic potential, in Fig. 4 are the result of polarization of charges localized near the atoms. The immediate environments about a reference molecule within shape-index-mapped Hirshfeld surfaces highlighting intermolecular C—H⋯O interactions, short interatomic O⋯H/H⋯O contacts, π–π stacking interactions and C—Cl⋯π contacts are illustrated in Fig. 5.
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The overall two-dimensional fingerprint plot (Fig. 6a) and those delineated into H⋯H, O⋯H/H⋯O, Cl⋯H/H⋯Cl, C⋯C, C⋯H/H⋯C, C⋯Cl/Cl⋯C and Cl⋯O/O⋯Cl contacts (McKinnon et al., 2007) are illustrated in Fig. 6b–h, respectively; the relative contributions from the various contacts to the Hirshfeld surfaces are summarized in Table 3. The relatively low, i.e. 35.9%, contribution from H⋯H contacts to the Hirshfeld surface of (I) is due to the low content of hydrogen atoms in the molecule and the involvement of some hydrogen atoms in short interatomic O⋯H/H⋯O contacts (Tables 1 and 2). The single peak at de + di ∼2.3 Å in Fig. 6b is the result of a short interatomic H⋯H contact (Table 2). The intermolecular C—H⋯O interaction in the crystal is recognized as the pair of peaks at de + di ∼2.6 Å in the O⋯H/H⋯O delineated fingerprint plot (Fig. 6c); the points arising from the short interatomic O⋯H contacts are merged in the plot.
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The fingerprint plot delineated into C⋯C contacts, Fig. 6e, characterizes the two π–π stacking interactions, one between inversion-related naphthyl rings, and the other between the chlorobenzene and (C2–C4/C9–C11) rings as the two overlapping triangular regions at around de = di ∼1.8 and 1.9 Å, respectively, having green points in the overlapping portion. The presence of these two π–π stacking interactions is also seen in the flat regions around the participating rings labelled with 1, 2 and 3 in the Hirshfeld surface mapped over curvedness in Fig. 7.
The chlorine atom on the benzene (C14–C19) ring makes a useful contribution to the molecular packing. The small, i.e. 3.0%, contribution from C⋯Cl/Cl⋯C contacts (Fig. 6g) to the Hirshfeld surface is the result of its involvement in a C—Cl⋯π contact formed between symmetry-related chlorobenzene atoms (Fig. 5c). Its presence is also clear from the fingerprint plot delineated into Cl⋯H/H⋯Cl (Fig. 6d), and Cl⋯O/O⋯Cl contacts (Fig. 6h). The contribution from C⋯H/H⋯C contacts (Fig. 6f) and other contacts (Table 3), including the selenium atom, have negligible influence on the packing as the interatomic separations are greater than sum of their respective van der Waals radii.
5. Database survey
There are three structures in the crystallographic literature (Groom et al., 2016) having a similar 2-(organylselanyl)oxane framework as in (I). The chemical diagrams for these, i.e. (II) (Traar et al., 2004), (III) (Woodward et al., 2010) and (IV) (McDonagh et al., 2016) are shown in the Scheme above. Each of the structures features an intramolecular Se⋯O interaction as in (I). From the data collated in Table 4, there is no correlation between the Se⋯O distance and the C—Se—C angle, consistent with the weak nature of these interactions.
6. Synthesis and crystallization
Referring to the reaction scheme, in a double-necked flask equipped with a magnetic bar and reflux condenser, under a nitrogen atmosphere, lawsone (1 mmol, 174 mg), paraformaldehyde (8 mmol, 240 mg), the vinyl selenide (1.5 mmol, 326 mg) and the ionic liquid 1-butyl-3-methylimidazolium chloride, [Bmim]Cl (1 mmol, 175 mg) were added over 1,4-dioxane (2 ml). The reaction mixture was heated at 383 K and stirred over 2 h. The reaction mixture was cooled and diluted with dichloromethane (100 ml) and then washed with water (3 × 50 ml). The organic phase was dried over Na2SO4, filtered and concentrated under vacuum. The crude product was purified in a silica gel-packed column, using ethyl acetate and hexane (2:8) as to afford α-lapachone and β-lapachone (I) derivatives in 80% yield. Crystals of (I) were obtained by slow evaporation of a solvent mixture of hexane and ethyl acetate (8:2).
7. details
Crystal data, data collection and structure . The carbon-bound H atoms were placed in calculated positions (C—H = 0.93–0.98 Å) and were included in the in the riding-model approximation, with Uiso(H) set to 1.2Ueq(C).
details are summarized in Table 5Supporting information
CCDC reference: 1551641
https://doi.org/10.1107/S2056989017007605/wm5392sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989017007605/wm5392Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989017007605/wm5392Isup3.cml
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SIR2014 (Burla et al., 2015); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C19H13ClO3Se | F(000) = 808 |
Mr = 403.70 | Dx = 1.635 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 7.3757 (3) Å | Cell parameters from 9049 reflections |
b = 13.7306 (5) Å | θ = 2.5–26.3° |
c = 16.4473 (6) Å | µ = 2.47 mm−1 |
β = 100.002 (1)° | T = 293 K |
V = 1640.35 (11) Å3 | Irregular, colourless |
Z = 4 | 0.40 × 0.33 × 0.27 mm |
Bruker APEXII CCD diffractometer | 2984 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.031 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | θmax = 26.4°, θmin = 1.9° |
Tmin = 0.484, Tmax = 0.745 | h = −9→9 |
38518 measured reflections | k = −17→17 |
3367 independent reflections | l = −20→20 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
wR(F2) = 0.068 | w = 1/[σ2(Fo2) + (0.0329P)2 + 0.739P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
3367 reflections | Δρmax = 0.36 e Å−3 |
217 parameters | Δρmin = −0.39 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Se1 | 0.50950 (3) | 0.20340 (2) | 0.19075 (2) | 0.05076 (8) | |
Cl1 | 0.74491 (12) | 0.48216 (7) | −0.08524 (6) | 0.0988 (3) | |
O1 | 0.14227 (17) | 0.24860 (9) | 0.12331 (8) | 0.0427 (3) | |
O2 | −0.2776 (2) | −0.07713 (12) | 0.09235 (12) | 0.0741 (5) | |
O3 | −0.0776 (2) | −0.03054 (10) | 0.24246 (10) | 0.0628 (4) | |
C1 | 0.2739 (3) | 0.26958 (13) | 0.19618 (12) | 0.0429 (4) | |
H9 | 0.2967 | 0.3399 | 0.1975 | 0.051* | |
C2 | 0.0406 (2) | 0.16654 (12) | 0.12272 (11) | 0.0362 (4) | |
C3 | −0.0687 (2) | 0.14639 (13) | 0.04065 (11) | 0.0389 (4) | |
C4 | −0.1805 (2) | 0.06325 (14) | 0.02911 (12) | 0.0432 (4) | |
C5 | −0.2841 (3) | 0.04307 (17) | −0.04809 (13) | 0.0563 (5) | |
H4 | −0.3567 | −0.0127 | −0.0558 | 0.068* | |
C6 | −0.2792 (3) | 0.1060 (2) | −0.11328 (13) | 0.0644 (6) | |
H3 | −0.3499 | 0.0930 | −0.1647 | 0.077* | |
C7 | −0.1698 (3) | 0.18762 (19) | −0.10224 (13) | 0.0601 (6) | |
H2 | −0.1675 | 0.2297 | −0.1464 | 0.072* | |
C8 | −0.0625 (3) | 0.20824 (16) | −0.02611 (12) | 0.0491 (5) | |
H1 | 0.0129 | 0.2630 | −0.0197 | 0.059* | |
C9 | −0.1868 (2) | −0.00345 (14) | 0.09908 (13) | 0.0468 (4) | |
C10 | −0.0715 (3) | 0.02303 (13) | 0.18356 (12) | 0.0431 (4) | |
C11 | 0.0400 (2) | 0.10986 (13) | 0.19024 (11) | 0.0387 (4) | |
C12 | 0.1505 (3) | 0.13595 (14) | 0.27303 (11) | 0.0479 (4) | |
H7 | 0.2611 | 0.0965 | 0.2838 | 0.057* | |
H8 | 0.0787 | 0.1232 | 0.3160 | 0.057* | |
C13 | 0.2018 (3) | 0.24304 (14) | 0.27349 (12) | 0.0502 (5) | |
H6 | 0.0945 | 0.2824 | 0.2774 | 0.060* | |
H5 | 0.2952 | 0.2568 | 0.3214 | 0.060* | |
C14 | 0.5784 (2) | 0.28761 (13) | 0.10819 (12) | 0.0433 (4) | |
C15 | 0.7139 (3) | 0.35717 (15) | 0.13040 (13) | 0.0508 (5) | |
H13 | 0.7709 | 0.3629 | 0.1853 | 0.061* | |
C16 | 0.7646 (3) | 0.41802 (17) | 0.07156 (16) | 0.0599 (6) | |
H12 | 0.8567 | 0.4642 | 0.0862 | 0.072* | |
C17 | 0.6774 (3) | 0.40953 (17) | −0.00896 (15) | 0.0587 (5) | |
C18 | 0.5413 (3) | 0.3415 (2) | −0.03203 (14) | 0.0617 (6) | |
H11 | 0.4824 | 0.3374 | −0.0867 | 0.074* | |
C19 | 0.4930 (3) | 0.27935 (17) | 0.02638 (13) | 0.0527 (5) | |
H10 | 0.4034 | 0.2320 | 0.0110 | 0.063* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Se1 | 0.04595 (13) | 0.04744 (13) | 0.05540 (14) | 0.00547 (8) | −0.00095 (9) | 0.00375 (9) |
Cl1 | 0.0924 (5) | 0.1005 (6) | 0.1134 (6) | 0.0119 (4) | 0.0452 (5) | 0.0443 (5) |
O1 | 0.0412 (6) | 0.0388 (7) | 0.0471 (7) | −0.0011 (5) | 0.0046 (5) | 0.0103 (6) |
O2 | 0.0652 (10) | 0.0486 (9) | 0.0975 (13) | −0.0140 (8) | −0.0167 (9) | 0.0100 (9) |
O3 | 0.0868 (11) | 0.0421 (8) | 0.0603 (9) | −0.0118 (7) | 0.0148 (8) | 0.0101 (7) |
C1 | 0.0477 (10) | 0.0305 (8) | 0.0495 (10) | 0.0001 (7) | 0.0056 (8) | −0.0003 (7) |
C2 | 0.0341 (8) | 0.0329 (8) | 0.0423 (9) | 0.0067 (7) | 0.0089 (7) | 0.0021 (7) |
C3 | 0.0326 (8) | 0.0434 (10) | 0.0416 (9) | 0.0118 (7) | 0.0088 (7) | 0.0006 (7) |
C4 | 0.0345 (9) | 0.0446 (10) | 0.0495 (10) | 0.0117 (7) | 0.0048 (7) | −0.0050 (8) |
C5 | 0.0427 (10) | 0.0635 (13) | 0.0594 (13) | 0.0102 (9) | 0.0000 (9) | −0.0145 (11) |
C6 | 0.0501 (12) | 0.0963 (19) | 0.0437 (11) | 0.0186 (13) | −0.0001 (9) | −0.0120 (12) |
C7 | 0.0515 (12) | 0.0891 (17) | 0.0410 (11) | 0.0183 (12) | 0.0114 (9) | 0.0091 (11) |
C8 | 0.0411 (10) | 0.0638 (13) | 0.0441 (10) | 0.0113 (9) | 0.0120 (8) | 0.0081 (9) |
C9 | 0.0374 (9) | 0.0356 (9) | 0.0653 (12) | 0.0056 (8) | 0.0027 (8) | 0.0003 (9) |
C10 | 0.0470 (10) | 0.0315 (9) | 0.0522 (11) | 0.0048 (7) | 0.0124 (8) | 0.0033 (8) |
C11 | 0.0433 (9) | 0.0320 (9) | 0.0412 (9) | 0.0048 (7) | 0.0085 (7) | 0.0017 (7) |
C12 | 0.0645 (12) | 0.0391 (10) | 0.0395 (10) | −0.0009 (9) | 0.0076 (9) | 0.0026 (8) |
C13 | 0.0664 (13) | 0.0386 (10) | 0.0458 (10) | −0.0005 (9) | 0.0105 (9) | −0.0047 (8) |
C14 | 0.0349 (9) | 0.0438 (10) | 0.0498 (10) | 0.0029 (7) | 0.0030 (8) | −0.0071 (8) |
C15 | 0.0432 (10) | 0.0541 (12) | 0.0536 (11) | −0.0039 (9) | 0.0042 (9) | −0.0153 (9) |
C16 | 0.0515 (12) | 0.0505 (12) | 0.0804 (16) | −0.0078 (10) | 0.0189 (11) | −0.0138 (11) |
C17 | 0.0529 (12) | 0.0560 (13) | 0.0719 (14) | 0.0120 (10) | 0.0240 (11) | 0.0099 (11) |
C18 | 0.0489 (12) | 0.0858 (17) | 0.0489 (12) | 0.0057 (11) | 0.0041 (9) | 0.0033 (11) |
C19 | 0.0401 (10) | 0.0636 (13) | 0.0514 (11) | −0.0060 (9) | −0.0006 (9) | −0.0093 (10) |
Se1—C14 | 1.918 (2) | C7—H2 | 0.9300 |
Se1—C1 | 1.9769 (19) | C8—H1 | 0.9300 |
Cl1—C17 | 1.742 (2) | C9—C10 | 1.541 (3) |
O1—C2 | 1.353 (2) | C10—C11 | 1.442 (3) |
O1—C1 | 1.434 (2) | C11—C12 | 1.504 (3) |
O2—C9 | 1.208 (2) | C12—C13 | 1.518 (3) |
O3—C10 | 1.223 (2) | C12—H7 | 0.9700 |
C1—C13 | 1.505 (3) | C12—H8 | 0.9700 |
C1—H9 | 0.9800 | C13—H6 | 0.9700 |
C2—C11 | 1.357 (2) | C13—H5 | 0.9700 |
C2—C3 | 1.473 (2) | C14—C15 | 1.385 (3) |
C3—C8 | 1.395 (3) | C14—C19 | 1.388 (3) |
C3—C4 | 1.401 (3) | C15—C16 | 1.379 (3) |
C4—C5 | 1.392 (3) | C15—H13 | 0.9300 |
C4—C9 | 1.478 (3) | C16—C17 | 1.373 (3) |
C5—C6 | 1.382 (3) | C16—H12 | 0.9300 |
C5—H4 | 0.9300 | C17—C18 | 1.376 (3) |
C6—C7 | 1.375 (4) | C18—C19 | 1.377 (3) |
C6—H3 | 0.9300 | C18—H11 | 0.9300 |
C7—C8 | 1.389 (3) | C19—H10 | 0.9300 |
C14—Se1—C1 | 95.62 (8) | C11—C10—C9 | 118.81 (16) |
C2—O1—C1 | 117.85 (13) | C2—C11—C10 | 119.65 (17) |
O1—C1—C13 | 111.73 (16) | C2—C11—C12 | 121.77 (17) |
O1—C1—Se1 | 110.03 (12) | C10—C11—C12 | 118.57 (16) |
C13—C1—Se1 | 111.65 (13) | C11—C12—C13 | 109.32 (15) |
O1—C1—H9 | 107.7 | C11—C12—H7 | 109.8 |
C13—C1—H9 | 107.7 | C13—C12—H7 | 109.8 |
Se1—C1—H9 | 107.7 | C11—C12—H8 | 109.8 |
O1—C2—C11 | 123.53 (16) | C13—C12—H8 | 109.8 |
O1—C2—C3 | 112.17 (14) | H7—C12—H8 | 108.3 |
C11—C2—C3 | 124.29 (16) | C1—C13—C12 | 110.77 (16) |
C8—C3—C4 | 119.21 (18) | C1—C13—H6 | 109.5 |
C8—C3—C2 | 121.29 (17) | C12—C13—H6 | 109.5 |
C4—C3—C2 | 119.49 (16) | C1—C13—H5 | 109.5 |
C5—C4—C3 | 120.19 (19) | C12—C13—H5 | 109.5 |
C5—C4—C9 | 120.03 (19) | H6—C13—H5 | 108.1 |
C3—C4—C9 | 119.78 (17) | C15—C14—C19 | 119.8 (2) |
C6—C5—C4 | 119.9 (2) | C15—C14—Se1 | 119.79 (15) |
C6—C5—H4 | 120.0 | C19—C14—Se1 | 120.39 (15) |
C4—C5—H4 | 120.0 | C16—C15—C14 | 120.3 (2) |
C7—C6—C5 | 120.1 (2) | C16—C15—H13 | 119.9 |
C7—C6—H3 | 120.0 | C14—C15—H13 | 119.9 |
C5—C6—H3 | 120.0 | C17—C16—C15 | 119.1 (2) |
C6—C7—C8 | 121.0 (2) | C17—C16—H12 | 120.4 |
C6—C7—H2 | 119.5 | C15—C16—H12 | 120.4 |
C8—C7—H2 | 119.5 | C16—C17—C18 | 121.4 (2) |
C7—C8—C3 | 119.6 (2) | C16—C17—Cl1 | 120.10 (19) |
C7—C8—H1 | 120.2 | C18—C17—Cl1 | 118.46 (19) |
C3—C8—H1 | 120.2 | C17—C18—C19 | 119.6 (2) |
O2—C9—C4 | 122.67 (19) | C17—C18—H11 | 120.2 |
O2—C9—C10 | 119.38 (19) | C19—C18—H11 | 120.2 |
C4—C9—C10 | 117.95 (16) | C18—C19—C14 | 119.8 (2) |
O3—C10—C11 | 122.40 (18) | C18—C19—H10 | 120.1 |
O3—C10—C9 | 118.79 (17) | C14—C19—H10 | 120.1 |
C2—O1—C1—C13 | −38.2 (2) | O2—C9—C10—C11 | 178.44 (18) |
C2—O1—C1—Se1 | 86.38 (16) | C4—C9—C10—C11 | −1.4 (2) |
C1—O1—C2—C11 | 8.4 (2) | O1—C2—C11—C10 | −179.37 (15) |
C1—O1—C2—C3 | −171.67 (14) | C3—C2—C11—C10 | 0.7 (3) |
O1—C2—C3—C8 | −0.4 (2) | O1—C2—C11—C12 | 1.8 (3) |
C11—C2—C3—C8 | 179.55 (17) | C3—C2—C11—C12 | −178.14 (16) |
O1—C2—C3—C4 | 179.30 (14) | O3—C10—C11—C2 | −179.78 (18) |
C11—C2—C3—C4 | −0.8 (2) | C9—C10—C11—C2 | 0.4 (3) |
C8—C3—C4—C5 | −0.1 (3) | O3—C10—C11—C12 | −0.9 (3) |
C2—C3—C4—C5 | −179.83 (16) | C9—C10—C11—C12 | 179.28 (16) |
C8—C3—C4—C9 | 179.35 (16) | C2—C11—C12—C13 | 18.3 (3) |
C2—C3—C4—C9 | −0.3 (2) | C10—C11—C12—C13 | −160.59 (17) |
C3—C4—C5—C6 | −1.0 (3) | O1—C1—C13—C12 | 57.9 (2) |
C9—C4—C5—C6 | 179.49 (18) | Se1—C1—C13—C12 | −65.84 (19) |
C4—C5—C6—C7 | 1.0 (3) | C11—C12—C13—C1 | −46.3 (2) |
C5—C6—C7—C8 | 0.2 (3) | C19—C14—C15—C16 | −0.2 (3) |
C6—C7—C8—C3 | −1.4 (3) | Se1—C14—C15—C16 | 179.92 (16) |
C4—C3—C8—C7 | 1.3 (3) | C14—C15—C16—C17 | 0.9 (3) |
C2—C3—C8—C7 | −178.99 (17) | C15—C16—C17—C18 | −0.3 (3) |
C5—C4—C9—O2 | 1.0 (3) | C15—C16—C17—Cl1 | −177.47 (16) |
C3—C4—C9—O2 | −178.48 (19) | C16—C17—C18—C19 | −1.0 (3) |
C5—C4—C9—C10 | −179.15 (16) | Cl1—C17—C18—C19 | 176.26 (17) |
C3—C4—C9—C10 | 1.4 (2) | C17—C18—C19—C14 | 1.6 (3) |
O2—C9—C10—O3 | −1.4 (3) | C15—C14—C19—C18 | −1.1 (3) |
C4—C9—C10—O3 | 178.77 (17) | Se1—C14—C19—C18 | 178.81 (16) |
Cg1 is the centroid of the C14–C19 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H6···O3i | 0.97 | 2.59 | 3.239 (2) | 125 |
C17—Cl1···Cg1ii | 1.74 (1) | 3.72 (1) | 4.000 (2) | 86 (1) |
Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) −x+1, −y+1, −z. |
Contact | distance | symmetry operation |
H5···H11 | 2.27 | x, 1/2 - y, 1/2 + z |
O2···H5 | 2.70 | -x, -1/2 + y, 1/2 - z |
O3···H9 | 2.70 | -x, -1/2 + y, 1/2 - z |
C7···C18 | 3.346 (3) | -1 + x, y, z |
Contact | percentage contribution |
H···H | 35.9 |
O···H/H···O | 18.2 |
Cl···H/H···Cl | 10.6 |
C···H/H···C | 9.0 |
C···C | 9.9 |
Se···H/H···Se | 4.2 |
Se···C/C···Se | 3.0 |
C···Cl/Cl···C | 3.0 |
C···O/O···C | 2.6 |
Cl···O/O···Cl | 2.5 |
Se···Cl/Cl···Se | 0.6 |
Se···O/O···Se | 0.5 |
Compound | Se···O | C—Se—C | Ref. |
(I) | 2.8122 (13) | 95.62 (8) | this work |
(II) | 2.7429 (18) | 98.43 (12) | Traar et al. (2004) |
(III) | 2.8760 (12) | 98.16 (8) | Woodward et al. (2010) |
(IV) | 2.8606 (19) | 97.41 (12) | McDonagh et al. (2016) |
Acknowledgements
The Brazilian agency National Council for Scientific and Technological Development, CNPq, is gratefully acknowledged for a scholarship to JZ-S (305626/2013–2).
References
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Burla, M. C., Caliandro, R., Carrozzini, B., Cascarano, G. L., Cuocci, C., Giacovazzo, C., Mallamo, M., Mazzone, A. & Polidori, G. (2015). J. Appl. Cryst. 48, 306–309. Web of Science CrossRef CAS IUCr Journals Google Scholar
Chau, Y. P., Shiah, S. G., Don, M. J. & Kuo, M. L. (1998). Free Radic. Biol. Med. 24, 660–670. CrossRef CAS PubMed Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. Web of Science CSD CrossRef IUCr Journals Google Scholar
Jotani, M. M., Zukerman-Schpector, J., Madureira, L. S., Poplaukhin, P., Arman, H. D., Miller, T. & Tiekink, E. R. T. (2016). Z. Kristallogr. 231, 415–425. CAS Google Scholar
Kim, E. J., Ji, I. M., Ahn, K. J., Choi, E. K., Park, H. J., Lim, B. U., Song, S. W. & Park, H. J. (2005). Cancer Res. Treat, 37, 183–190. CrossRef PubMed Google Scholar
Li, C. J., Wang, C. & Pardee, A. B. (1995). Cancer Res. 55, 3712–3715. CAS PubMed Google Scholar
McDonagh, A. W., Mahon, M. F. & Murphy, P. V. (2016). Org. Lett. 18, 552–555. CrossRef CAS PubMed Google Scholar
McKinnon, J. J., Jayatilaka, D. & Spackman, M. A. (2007). Chem. Commun. pp. 3814–3816. Web of Science CrossRef Google Scholar
Park, E. J., Min, K.-J., Lee, T.-J., Yoo, Y. H., Kim, Y.-S. & Kwon, T. K. (2014). Cell Death Dis. 5, e1230. CrossRef PubMed Google Scholar
Schaffner-Sabba, K., Schmidt-Ruppin, K. H., Wehrli, W., Schuerch, A. R. & Wasley, J. W. (1984). J. Med. Chem. 27, 990–994. CAS PubMed Google Scholar
Seng, H.-L. & Tiekink, E. R. T. (2012). Appl. Organomet. Chem. 26, 655–662. CrossRef CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Suzuki, M., Amano, M., Choi, J., Park, H. J., Williams, B. W., Ono, K. & Song, C. W. (2006). Radiat. Res. 165, 525–531. CrossRef PubMed CAS Google Scholar
Tiekink, E. R. T. (2012). Dalton Trans. 41, 6390–6395. Web of Science CrossRef CAS PubMed Google Scholar
Traar, P., Belaj, F. & Francesconi, K. A. (2004). Aust. J. Chem. 57, 1051–1053. CrossRef CAS Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Woodward, H., Smith, N. & Gallagher, T. (2010). Synlett, pp. 869–872. Google Scholar
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