research communications
The 3
of rubidium hydrogen carbonate, RbHCOaDépartement Mesures Physique, Institut Universitaire Téchnologique de Bordeaux, 15 Rue de Naudet, 33175 Gradignan, France, and bX-Ray Centre, TU Wien, Getreidemarkt 9, A-1060 Vienna, Austria
*Correspondence e-mail: bstoeger@mail.tuwien.ac.at
Rubidium hydrogen carbonate, RbHCO3, features an order/disorder at TC = 245 K from the high-temperature (HT) disordered C2/m modification to the low-temperature (LT) C-1 modification. The crystal structures are characterized by [HCO3]22− pairs of hydrogen carbonate groups connected by strong hydrogen bonding. The [HCO3]22− pairs are connected by Rb+ cations into a three-dimensional network. In HT-RbHCO3, the hydrogen atom is disordered. In LT-RbHCO3, ordering of the hydrogen atom leads to a translationengleiche symmetry reduction of index 2. The lost reflections and rotations are retained as twin operations.
Keywords: crystal structure; order/disorder transition; hydrogen carbonate.
1. Chemical context
The crystal chemistry of partially protonated oxoanions of main group elements [e.g. hydrogen carbonates, (di)hydrogen phosphates, hydrogen sulfates etc] is characterized by the formation of strong hydrogen bonds. Topologically, the hydrogen-bonding network may lead to isolated units (e.g. pairs in KHCO3; Thomas et al., 1974), infinite chains (e.g. NaHCO3; Sass & Scheuerman, 1962) or two-dimensional networks (e.g. CsH2PO4; Uesu & Kobayashi, 1976). Compounds with such extended hydrogen-bonded network structures may be useful as proton conductors (Kim et al., 2015).
In many cases, at higher temperatures, the hydrogen atoms are dynamically disordered between the connected oxoanions. On cooling, the disorder is `frozen', resulting in a reduction of symmetry (order/disorder phase transition). Such phase transitions are of technological importance, for example in the KH2PO4 (KDP) family of compounds and therefore have been studied extensively. At high temperatures, these compounds exist in a paraelectric tetragonal phase. On cooling below TC, they order into orthorhombic This kind of is likewise of theoretical interest, because it allows the study of proton quantum dynamics (Fillaux et al., 2008).
From a crystallographic point of view, these phase transitions offer the potential to study group/subgroup relationships (Müller, 2013). Moreover, in the case of a reduction of the lost symmetry is typically retained as a leading to interesting as well as challenging problems.
A well known example of a hydrogen-bonding order/disorder transition is potassium hydrogen carbonate, KHCO3 (Kashida & Yamamoto, 1990). Above TC = 318 K, it crystallizes in a monoclinic C2/m phase featuring disorder of the hydrogen atom (Fillaux et al., 2008). On cooling, it transforms into an ordered P21/a phase (Thomas et al., 1974). Rubidium hydrogen carbonate RbHCO3 shows an analogous at TC = 245 K, which has been thoroughly studied by NMR spectroscopy (Odin, 2004). The published structural data, on the other hand, leave much to be desired. A structure model of the high-temperature (HT) modification in the C2 has been provided by Kim (1969). The structure was later redetermined by Cirpus (1997), establishing the correct C2/m and isotypism with KHCO3. The lattice metrics of the low-temperature (LT) modification were identified as triclinic by Müller & Roth (2005). Although a model was refined by these authors, structural data were not deposited. To fill this gap, in this communication we report detailed structural data of the LT modification of RbHCO3 which were derived from a twinned crystal. We also redetermined the structure of the HT modification. The is discussed in detail and contrasted to the structural changes observed in KHCO3.
2. Structural commentary
2.1. General
The structure model of HT-RbHCO3 (C2/m) is in good agreement with that of Cirpus (1997). The crystal structures of HT-RbHCO3 (C2/m) and LT-RbHCO3 (C) are closely related. The central building blocks are pairs of HCO3− anion groups, which are connected by strong hydrogen bonds (Fig. 1, Tables 1 and 2). The prime cause for the order/disorder is the dynamic behaviour of the protons in these pairs. In HT-RbHCO3, they are dynamically disordered, resulting in a short [C—O1: 1.237 (4) Å] and two symmetry-equivalent intermediate [2×C—O2: 1.307 (3) Å] C—O bonds. The [HCO3]22− pair accordingly possesses 2/m symmetry. On cooling, the protons cannot overcome the tunneling barrier and are attached to distinct O atoms. In consequence, the symmetry of the [HCO3]22− pair is reduced to . There are two short [C—O1: 1.241 (4) Å, C—O3: 1.270 (4) Å] and one longer [C—O2: 1.349 (4) Å] bond, as is characteristic for partially hydrogenated oxoanions. In both cases, the HCO3− group is flat [distance of the C atom to the plane defined by the three O atoms: 0.000 (4) Å (HT) and 0.007 (3) Å (LT)], in accordance with literature data (Zemann, 1981).
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The [HCO3]22− pairs are connected by the Rb+ cations into a three-dimensional network (Figs. 2 and 3). The Rb+ cations are located on the reflection plane of the C2/m group (HT-RbHCO3) or on general positions (LT-RbHCO3). They are connected to six carbonate groups, two of which coordinate in a bidentate manner, the four others via one O atom (Fig. 4). Thus, in total, the Rb+ cations are coordinated by eight O atoms with bond lengths in the ranges 2.869 (3)–3.0662 (12) Å (HT-RbHCO3) and 2.865 (3)–3.101 (2) Å (LT-RbHCO3).
2.2. Symmetry reduction and relationship to KHCO3
Whereas the HT-KHCO3 and HT-RbHCO3 phases are isotypic, the corresponding LT phases are not. To understand the different behaviour on cooling, it is useful to consider the structures as being made up of layers of [HCO3]22− pairs parallel to (100). In the HT phases, these layers possess the p12/m1 layer group symmetry. On cooling, owing to the ordering of the protons, the m[010] operation is lost. All [HCO3]22− pairs are rotated in the same direction about [001], resulting in layers with p symmetry.
Thus, the lower symmetry layers may appear in one out of two orientations with respect to the [010] direction. In the LT-RbHCO3 phase, all layers feature the same orientation. Adjacent layers are related by translation symmetry (as in the C2/m HT phase) and therefore the translation lattice is retained. The symmetry loss concerns only the Since one out of two symmetry operations is retained (viz. the translations and inversions), the symmetry reduction is of the t2 kind, where t stands for translationengleiche and 2 for the index of in 2/m (Müller, 2013).
In the LT-KHCO3 phase, on the other hand, layers feature alternating orientation with respect to [010]. The layers are split in two sets of translationally equivalent layers. The translation lattice is therefore reduced by an index of two, which here corresponds to a change of the (mC to mP) while retaining the volume of the cell in the (more convenient but non-standard) centred setting. In return, adjacent layers are related by an a glide reflection. Thus, the 2/m is retained. The symmetry reduction is therefore of the k2 kind, where k stands for klassengleiche (Müller, 2013).
The structural relationships of the HT and LT phases of RbHCO3 and KHCO3 are represented in a Bärnighausen family tree in Fig. 5. The atomic labelling and coordinates of the KHCO3 modifications were adapted from the original literature (Fillaux et al., 2008; Thomas et al., 1974) to be comparable to the data presented here. Note that the fractional coordinates of all four phases depicted in Fig. 5 are remarkably similar.
The atoms on the reflection planes in the HT phases are located on general positions in the LT phases. The O2 atom, which is located on a general position in the HT phase, is split into two positions in the LT phase. In contrast, the position of the H atom, which is also located on a general position in the HT modification, is not split. Instead, its occupancy is raised from 0.5 to 1.
2.3. Twinning
Phase transitions are one of the classical causes of ; Stöger et al., 2016). If the of the structure is reduced, the lost operations may be retained as twin operations. Indeed, the crystals of RbHCO3 were all systematically twinned below TC. The crystal under investigation was made up of two domains related by m[010] and equivalently 2[010], which corresponds precisely to the second in the decomposition of in 2/m. The twin volume ratio was determined by the TWINABS software as 51.3:48.7, which compares well to the volume ratio obtained from the (abandoned, see Section 3.3) against HKLF 5 style data [52.0:48.0 (4)].
(Hahn & Klapper, 2006Since the transformation into the triclinic C LT phase results in a substantial increase of the γ angle to γ = 92.748 (9)°, the diffraction spots at higher k indices are clearly separated (Fig. 6). Such a twin cannot be treated as a twin by pseudo-merohedry. The α angle, on the other hand, deviates only slightly from the monoclinic metrics [α = 89.343 (4)°]. The lattice of the layers therefore is pseudo-rectangular, which is consistent with the crystallo-chemical considerations above.
In KHCO3, the HT and LT phase feature the same 2/m. Stacking faults therefore do not result in but in antiphase domains (Wondratschek & Jeitschko, 1976). These kinds of domains are significantly more difficult to quantify using X-ray diffraction.
3. Experimental
3.1. Synthesis and crystallization
Large crystals of RbHCO3 were grown by dissolving commercial `Rb2CO3' (actually the sesquihydrate according to powder X-ray diffraction) in a small quantity of water followed by evaporation of the solution overnight at ca 295 K.
3.2. Data collection
Crystals were cut to sizes suitable for single crystal diffraction with a razor blade. Abrupt cooling of the crystals to below the phase-transition temperature by immersion into a cooled N2 stream led to fourfold splitting of reflections as described by Müller & Roth (2005). Data reduction was successful using four orientation matrices and a reasonable structure model could be obtained. Nevertheless, the quality of the was deemed not optimal (notably, the hydrogen atoms could not be located). From structural reasoning, only two domains are expected (see Section 2.2). The higher number of domains was therefore attributed to a cracking of the crystal under thermal stress. Therefore, a data collection was first performed above TC at 270 K. Then, the crystal was slowly (2 K h−1) cooled to 200 K and a full sphere of was collected with fine slicing. The first scan was discarded because it contained distinct reflections from the HT phase as well as two LT domains. The data set obtained from the remaining scans featured only the two expected LT twin domains.
3.3. Data processing
Data of the HT modification was subjected to routine processing using SAINT and SADABS (Bruker, 2016). For the LT phase, reflections of both domains were separated and reduced to intensity data using overlap information. An absorption correction was applied using the TWINABS (Bruker, 2016) software. This software outputs `detwinned' conventional data (HKLF 4 style), usually used for structure solution and data with overlap information (HKLF 5 style). Surprisingly, the detwinned data set resulted in significantly better refinements. Not only were the residuals lower by two percentage points, additionally only in the detwinned data could the hydrogen atoms be located and refined. Therefore the discussion is based on the using the detwinned data set.
3.4. Structure solution and refinement
An initial model of the HT modification was adapted from the data of Cirpus (1997). The structure of the LT modification was solved using the dual-space approach implemented in SHELXT (Sheldrick, 2015). Atomic coordinates and labelling were adapted to be analogous to those of the HT modification. The non-standard C setting of the P was chosen to facilitate comparison with the HT modification [lattice basis transformation from P to C: (aC, bC, cC) = (bP + 2cP, −bP, aP)]. The structure models were refined against F2 with JANA2006 (Petříček et al., 2014). The hydrogen atoms were located in difference Fourier maps and the O—H distances restrained to 0.850 (1) Å. Crystal data, data collection and structure details are summarized in Table 3.
Supporting information
https://doi.org/10.1107/S2056989017008271/pk2601sup1.cif
contains datablocks HT_RbHCO3, LT_RbHCO3, global. DOI:Structure factors: contains datablock HT_RbHCO3. DOI: https://doi.org/10.1107/S2056989017008271/pk2601HT_RbHCO3sup2.hkl
Structure factors: contains datablock LT_RbHCO3. DOI: https://doi.org/10.1107/S2056989017008271/pk2601LT_RbHCO3sup3.hkl
For both compounds, data collection: APEX3 (Bruker, 2016); cell
SAINT-Plus (Bruker, 2016); data reduction: SAINT-Plus (Bruker, 2016). Program(s) used to solve structure: SHELXT (Sheldrick, 2015) for LT_RbHCO3. For both compounds, program(s) used to refine structure: Jana2006 (Petříček et al., 2014); molecular graphics: ATOMS (Dowty, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).RbHCO3 | F(000) = 272 |
Mr = 146.5 | Dx = 2.897 Mg m−3 |
Monoclinic, C2/m | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2y | Cell parameters from 1945 reflections |
a = 14.807 (3) Å | θ = 2.8–32.6° |
b = 5.8216 (12) Å | µ = 14.54 mm−1 |
c = 4.0217 (9) Å | T = 270 K |
β = 104.321 (5)° | Rod, colourless |
V = 335.91 (12) Å3 | 0.43 × 0.18 × 0.09 mm |
Z = 4 |
Bruker KAPPA APEXII CCD diffractometer | 544 reflections with I > 3σ(I) |
Radiation source: X-ray tube | Rint = 0.051 |
ω– and φ–scans | θmax = 33.0°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | h = −22→20 |
Tmin = 0.05, Tmax = 0.27 | k = −8→8 |
3067 measured reflections | l = −6→6 |
672 independent reflections |
Refinement on F2 | 0 constraints |
R[F2 > 2σ(F2)] = 0.029 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0004I2) |
S = 1.26 | (Δ/σ)max = 0.011 |
672 reflections | Δρmax = 0.86 e Å−3 |
32 parameters | Δρmin = −0.96 e Å−3 |
1 restraint |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Rb | 0.66119 (3) | 0 | 0.29537 (9) | 0.02714 (13) | |
O1 | 0.6878 (2) | 0.5 | 1.0996 (8) | 0.0324 (10) | |
O2 | 0.57663 (15) | 0.3079 (3) | 0.7353 (5) | 0.0304 (7) | |
C | 0.6159 (3) | 0.5 | 0.8641 (9) | 0.0210 (10) | |
H | 0.522 (2) | 0.328 (12) | 0.608 (16) | 0.04 (2)* | 0.5 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Rb | 0.0363 (3) | 0.02090 (17) | 0.0221 (2) | 0 | 0.00320 (15) | 0 |
O1 | 0.0244 (16) | 0.0332 (14) | 0.0343 (16) | 0 | −0.0030 (13) | 0 |
O2 | 0.0332 (13) | 0.0173 (8) | 0.0342 (11) | 0.0018 (7) | −0.0040 (9) | −0.0016 (7) |
C | 0.0231 (19) | 0.0186 (14) | 0.0217 (17) | 0 | 0.0062 (14) | 0 |
Rb—O1i | 2.869 (3) | Rb—O2vi | 3.001 (2) |
Rb—O1ii | 3.046 (3) | Rb—Ciii | 3.370 (2) |
Rb—O1iii | 3.0662 (12) | Rb—Civ | 3.370 (2) |
Rb—O1iv | 3.0662 (12) | O1—C | 1.237 (4) |
Rb—O2iv | 2.908 (2) | O2—C | 1.307 (3) |
Rb—O2v | 2.908 (2) | O2—H | 0.85 (4) |
Rb—O2 | 3.001 (2) | ||
O1i—Rb—O2iv | 138.83 (5) | Rbvii—O1—C | 172.6 (3) |
O1i—Rb—O2 | 81.45 (7) | Rb—O2—Rbviii | 85.75 (5) |
O1i—Rb—O2v | 138.83 (5) | Rb—O2—C | 122.4 (2) |
O1i—Rb—O2vi | 81.45 (7) | Rb—O2—H | 102 (4) |
O2iv—Rb—O2 | 85.75 (6) | Rbviii—O2—C | 98.99 (16) |
O2iv—Rb—O2v | 76.10 (5) | Rbviii—O2—H | 135 (4) |
O2iv—Rb—O2vi | 131.47 (6) | C—O2—H | 113 (5) |
O2—Rb—O2v | 131.47 (6) | O1—C—O2 | 121.17 (15) |
O2—Rb—O2vi | 73.35 (6) | O1—C—O2ix | 121.17 (15) |
O2v—Rb—O2vi | 85.75 (6) | O2—C—O2ix | 117.7 (3) |
Symmetry codes: (i) −x+3/2, y−1/2, −z+2; (ii) −x+3/2, y−1/2, −z+1; (iii) x, y−1, z−1; (iv) x, y, z−1; (v) x, −y, z−1; (vi) x, −y, z; (vii) −x+3/2, y+1/2, −z+2; (viii) x, y, z+1; (ix) x, −y+1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H···O2x | 0.85 (4) | 1.75 (4) | 2.571 (3) | 162 (6) |
Symmetry code: (x) −x+1, y, −z+1. |
RbHCO3 | Z = 4 |
Mr = 146.5 | F(000) = 272 |
Triclinic, C1 | Dx = 2.908 Mg m−3 |
Hall symbol: -C 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 14.945 (3) Å | Cell parameters from 1945 reflections |
b = 5.8212 (9) Å | θ = 2.8–32.6° |
c = 3.9699 (6) Å | µ = 14.60 mm−1 |
α = 89.343 (4)° | T = 200 K |
β = 104.096 (4)° | Rod, colourless |
γ = 92.748 (9)° | 0.43 × 0.18 × 0.09 mm |
V = 334.59 (9) Å3 |
Bruker KAPPA APEXII CCD diffractometer | 1029 reflections with I > 3σ(I) |
Radiation source: X-ray tube | Rint = 0.059 |
ω– and φ–scans | θmax = 32.7°, θmin = 2.8° |
Absorption correction: multi-scan (TWINABS; Bruker, 2016) | h = −6→22 |
Tmin = 0.05, Tmax = 0.27 | k = −8→8 |
8005 measured reflections | l = −6→5 |
1215 independent reflections |
Refinement on F2 | 0 constraints |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.075 | Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0004I2) |
S = 1.50 | (Δ/σ)max = 0.018 |
1215 reflections | Δρmax = 1.88 e Å−3 |
50 parameters | Δρmin = −1.81 e Å−3 |
1 restraint |
x | y | z | Uiso*/Ueq | ||
Rb | 0.66221 (2) | −0.00995 (4) | 0.29542 (8) | 0.01812 (10) | |
O1 | 0.68811 (18) | 0.4885 (4) | 1.0957 (7) | 0.0232 (8) | |
O2 | 0.57544 (19) | 0.2938 (4) | 0.7298 (7) | 0.0218 (8) | |
O3 | 0.57832 (19) | 0.6790 (4) | 0.7345 (6) | 0.0219 (8) | |
C | 0.6160 (2) | 0.4961 (5) | 0.8620 (8) | 0.0153 (9) | |
H | 0.529 (2) | 0.326 (7) | 0.570 (10) | 0.037 (13)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Rb | 0.02362 (19) | 0.01426 (16) | 0.01495 (15) | 0.00035 (9) | 0.00184 (11) | 0.00014 (9) |
O1 | 0.0190 (14) | 0.0226 (11) | 0.0236 (13) | 0.0006 (8) | −0.0032 (10) | 0.0001 (8) |
O2 | 0.0227 (14) | 0.0118 (10) | 0.0266 (13) | 0.0014 (8) | −0.0022 (11) | −0.0019 (8) |
O3 | 0.0256 (14) | 0.0128 (10) | 0.0223 (12) | 0.0003 (8) | −0.0033 (10) | 0.0007 (7) |
C | 0.0155 (16) | 0.0151 (13) | 0.0155 (14) | −0.0005 (10) | 0.0047 (12) | −0.0003 (9) |
Rb—O1i | 3.031 (2) | Rb—O3v | 2.944 (3) |
Rb—O1ii | 3.015 (3) | Rb—Civ | 3.324 (3) |
Rb—O1iii | 2.865 (3) | Rb—Ci | 3.408 (3) |
Rb—O1iv | 3.101 (2) | O1—C | 1.241 (4) |
Rb—O2i | 2.926 (2) | O2—C | 1.349 (4) |
Rb—O2 | 3.027 (3) | O2—H | 0.85 (3) |
Rb—O3iv | 2.885 (2) | O3—C | 1.270 (4) |
O1i—Rb—O1ii | 73.01 (7) | O3iv—Rb—O3v | 85.85 (7) |
O1i—Rb—O1iii | 94.75 (6) | Rbvi—O1—Rbii | 106.99 (8) |
O1i—Rb—O2i | 43.56 (6) | Rbvi—O1—Rbiii | 85.25 (6) |
O1i—Rb—O2 | 70.67 (7) | Rbvi—O1—C | 96.77 (18) |
O1i—Rb—O3iv | 116.17 (7) | Rbii—O1—Rbiii | 84.89 (7) |
O1i—Rb—O3v | 144.31 (8) | Rbii—O1—C | 103.4 (2) |
O1ii—Rb—O1iii | 84.89 (8) | Rbiii—O1—C | 170.4 (3) |
O1ii—Rb—O2i | 81.38 (7) | Rb—O2—Rbvi | 83.64 (6) |
O1ii—Rb—O2 | 140.08 (6) | Rb—O2—C | 122.1 (2) |
O1ii—Rb—O3iv | 80.76 (7) | Rb—O2—H | 97 (3) |
O1ii—Rb—O3v | 141.28 (7) | Rbvi—O2—C | 98.99 (17) |
O1iii—Rb—O2i | 138.29 (6) | Rbvi—O2—H | 149 (3) |
O1iii—Rb—O2 | 82.17 (7) | C—O2—H | 107 (3) |
O1iii—Rb—O3iv | 139.80 (7) | Rbvii—O3—Rbviii | 85.85 (6) |
O1iii—Rb—O3v | 82.33 (7) | Rbvii—O3—C | 121.9 (2) |
O2i—Rb—O2 | 83.64 (7) | Rbviii—O3—C | 98.73 (18) |
O2i—Rb—O3iv | 76.08 (6) | O1—C—O2 | 117.2 (3) |
O2i—Rb—O3v | 130.12 (8) | O1—C—O3 | 125.2 (3) |
O2—Rb—O3iv | 130.57 (7) | O2—C—O3 | 117.6 (3) |
O2—Rb—O3v | 73.70 (7) |
Symmetry codes: (i) x, y, z−1; (ii) −x+3/2, −y+1/2, −z+1; (iii) −x+3/2, −y+1/2, −z+2; (iv) x, y−1, z−1; (v) x, y−1, z; (vi) x, y, z+1; (vii) x, y+1, z; (viii) x, y+1, z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H···O3ix | 0.85 (3) | 1.75 (3) | 2.582 (3) | 165 (4) |
Symmetry code: (ix) −x+1, −y+1, −z+1. |
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