research communications
H-indole-2-carboxylate)
of diethyl 3,3′-[(4-nitrophenyl)methylene]bis(1aTargeted MRI Contrast Agents Laboratory of Jiangsu Province, Nanjing Polytechnic Institute, Geguan Road No.265 Nanjing, Nanjing 210048, People's Republic of China
*Correspondence e-mail: njutshs@126.com
In the title compound, C29H25N3O6, the mean planes of the two indole ring systems (r.m.s. deviations = 0.0115 and 0.0082 Å) are approximately perpendicular to one another, making a dihedral angle of 89.7 (5)°; the benzene ring is twisted with respect to the two indole ring systems by 52.6 (4) and 88.2 (3)°. In the crystal, pairs of N—H⋯O hydrogen bonds link the molecules into the inversion dimers, which are further linked into supramolecular chains along the b-axis direction. Weak C—H⋯O hydrogen bonds and C—H⋯π interactions are also observed in the crystal.
Keywords: crystal structure; bisindole; crystal structure; MRI; contrast agent.
CCDC reference: 1587329
1. Chemical context
Bis(indolyl)methane derivatives are abundantly present in various terrestrial and marine natural resources (Porter et al., 1977; Sundberg, 1996). They are important antibiotics in the field of pharmaceuticals with diverse activities, such as anticancer, antileishmanial and antihyperlipidemic (Chang et al., 1999; Ge et al., 1999). On the other hand, bis(indoly)methane derivatives can also be used as a precursor for MRI necrosis avid contrast agents (Ni, 2008). In recent years, we have reported the synthesis and crystal structures of some similar bis(indoly)methane compounds (Sun et al., 2012, 2015; Li et al., 2014; Lu et al., 2014). Now we report herein on the of the title bis(indoly)methane compound.
2. Structural commentary
The molecular structure of the title compound is shown in Fig. 1. The overall conformation of the molecule is affected by intramolecular C10—H10A⋯Cg3 and C21—H21A⋯Cg1 interactions (Table 1). The two indole ring systems are nearly perpendicular to one another [dihedral angle = 89.7 (5)°] while the benzene ring (C2–C7) is twisted to the N2/C8–C15 and N3/C19–C26 indole ring systems by dihedral angles of 52.6 (4) and 88.2 (3)°, respectively. The carboxyl groups are approximately coplanar with the attached indole ring systems, the dihedral angles between the carboxyl groups and the mean plane of the N2/C8–C15 and N3/C19–C26 indole ring systems are 12.5 (4) and 4.9 (5)°, respectively.
3. Supramolecular features
In the crystal, pairs of N2—H2A⋯O3i and N3—H3A⋯O5ii hydrogen bonds link the molecules into the inversion dimers, which are further shown as supramolecular chains propagating along the b-axis direction (Table 1 and Fig. 2). In the crystal, weak C—H⋯O hydrogen bonds and C—H⋯π interactions are also observed, linking the chains to form a three-dimensional supramolecular structure.
4. Database survey
Several similar structures have been reported previously, i.e. diethyl 3,3′-(phenylmethylene)bis(1H-indole-2-carboxylate) (Sun et al., 2012) and dimethyl 3,3′-[(4-fluorophenyl)methylene]bis(1H-indole-2-carboxylate) (Sun et al., 2015) and dimethyl 3,3′-[(4-chlorophenyl) methylene]bis(1H-indole-2-carboxylate) (Li et al., 2014) and dimethyl 3,3′-[(3-fluorophenyl)methylene]bis(1H-indole-2-carboxylate) (Lu et al., 2014). In these structures, the two indole ring systems are also nearly perpendicular to one another, making dihedral angles of 82.0 (5), 84.0 (5), 79.5 (4) and 87.8 (5)°, respectively.
5. Synthesis and crystallization
Ethyl indole-2-carboxylate (1.88 g, 10 mmol) was dissolved in 20 ml ethanol; commercially available 4-nitrobenzaldehyde (0.76 g, 5 mmol) was added and the mixture was heated to reflux temperature. Concentrated HCl (0.5 ml) was added and the reaction was left for 1 h. After cooling, the yellow product was filtered off and washed thoroughly with ethanol. The reaction was monitored with TLC (AcOEt:hexane = 1:3). Single crystals of the title compound suitable for X-ray analysis were obtained by slow evaporation of a methanol solution (yield 93%).
6. Refinement
Crystal data, data collection and structure . H atoms were positioned geometrically with N—H = 0.86 Å and C—H = 0.93–0.98 Å, and constrained to ride on their parent atoms with Uiso(H) = xUeq(C,N), where x = 1.5 for methyl H atoms and 1.2 for other H atoms.
details are summarized in Table 2
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Supporting information
CCDC reference: 1587329
https://doi.org/10.1107/S2056989017016929/xu5911sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989017016929/xu5911Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989017016929/xu5911Isup3.cml
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell
CAD-4 EXPRESS (Enraf–Nonius, 1994); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C29H25N3O6 | F(000) = 1072 |
Mr = 511.52 | Dx = 1.353 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 25 reflections |
a = 8.8040 (18) Å | θ = 9–13° |
b = 15.804 (3) Å | µ = 0.10 mm−1 |
c = 18.266 (4) Å | T = 293 K |
β = 98.78 (3)° | Block, colorless |
V = 2511.7 (9) Å3 | 0.30 × 0.20 × 0.10 mm |
Z = 4 |
Nonius CAD-4 diffractometer | 2963 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.043 |
Graphite monochromator | θmax = 25.4°, θmin = 1.7° |
ω/2θ scans | h = 0→10 |
Absorption correction: ψ scan (North et al., 1968) | k = 0→19 |
Tmin = 0.972, Tmax = 0.991 | l = −22→22 |
4925 measured reflections | 3 standard reflections every 200 reflections |
4611 independent reflections | intensity decay: 1% |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.164 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.098P)2] where P = (Fo2 + 2Fc2)/3 |
4611 reflections | (Δ/σ)max < 0.001 |
343 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.3019 (3) | 0.33359 (18) | 0.86721 (14) | 0.0648 (7) | |
C1 | 0.5958 (3) | 0.31146 (14) | 0.60845 (12) | 0.0395 (5) | |
H1A | 0.5204 | 0.3259 | 0.5650 | 0.047* | |
O1 | 0.3145 (3) | 0.27719 (17) | 0.91181 (14) | 0.1013 (9) | |
N2 | 0.8861 (2) | 0.47555 (13) | 0.58612 (12) | 0.0517 (6) | |
H2A | 0.9392 | 0.5055 | 0.5600 | 0.062* | |
C2 | 0.5083 (3) | 0.31093 (14) | 0.67433 (13) | 0.0394 (6) | |
O2 | 0.2403 (4) | 0.39980 (19) | 0.87776 (15) | 0.1199 (11) | |
N3 | 0.6690 (2) | 0.09119 (12) | 0.55132 (10) | 0.0435 (5) | |
H3A | 0.6407 | 0.0442 | 0.5296 | 0.052* | |
O3 | 0.8106 (2) | 0.45055 (14) | 0.43699 (10) | 0.0729 (6) | |
C3 | 0.4078 (3) | 0.37605 (17) | 0.68231 (14) | 0.0546 (7) | |
H3B | 0.3864 | 0.4157 | 0.6445 | 0.065* | |
O4 | 0.6050 (2) | 0.37421 (13) | 0.45415 (9) | 0.0626 (5) | |
C4 | 0.3383 (3) | 0.38418 (18) | 0.74445 (15) | 0.0590 (7) | |
H4A | 0.2725 | 0.4291 | 0.7494 | 0.071* | |
O5 | 0.3605 (2) | 0.08873 (11) | 0.49279 (11) | 0.0597 (5) | |
C5 | 0.3687 (3) | 0.32430 (16) | 0.79870 (14) | 0.0485 (6) | |
O6 | 0.33771 (19) | 0.22355 (10) | 0.52526 (10) | 0.0544 (5) | |
C6 | 0.4600 (3) | 0.25512 (16) | 0.79184 (14) | 0.0488 (6) | |
H6A | 0.4746 | 0.2137 | 0.8284 | 0.059* | |
C7 | 0.5301 (3) | 0.24868 (15) | 0.72855 (13) | 0.0453 (6) | |
H7A | 0.5920 | 0.2023 | 0.7226 | 0.054* | |
C8 | 0.7142 (3) | 0.38043 (14) | 0.61580 (13) | 0.0413 (6) | |
C9 | 0.7960 (3) | 0.41747 (15) | 0.68231 (14) | 0.0452 (6) | |
C10 | 0.7929 (3) | 0.40819 (18) | 0.75905 (14) | 0.0569 (7) | |
H10A | 0.7264 | 0.3696 | 0.7760 | 0.068* | |
C11 | 0.8885 (3) | 0.45645 (19) | 0.80769 (16) | 0.0653 (8) | |
H11A | 0.8854 | 0.4506 | 0.8581 | 0.078* | |
C12 | 0.9902 (3) | 0.51407 (18) | 0.78475 (16) | 0.0610 (8) | |
H12A | 1.0526 | 0.5464 | 0.8198 | 0.073* | |
C13 | 0.9999 (3) | 0.52399 (16) | 0.71204 (16) | 0.0553 (7) | |
H13A | 1.0699 | 0.5616 | 0.6966 | 0.066* | |
C14 | 0.9023 (3) | 0.47627 (15) | 0.66117 (14) | 0.0479 (6) | |
C15 | 0.7728 (3) | 0.42011 (15) | 0.55827 (13) | 0.0437 (6) | |
C16 | 0.7342 (3) | 0.41604 (17) | 0.47798 (15) | 0.0518 (7) | |
C17 | 0.5564 (4) | 0.3709 (3) | 0.37461 (16) | 0.0888 (11) | |
H17A | 0.5529 | 0.4278 | 0.3545 | 0.107* | |
H17B | 0.6304 | 0.3386 | 0.3519 | 0.107* | |
C18 | 0.4103 (5) | 0.3332 (3) | 0.3575 (2) | 0.1267 (17) | |
H18A | 0.3794 | 0.3330 | 0.3048 | 0.190* | |
H18B | 0.3372 | 0.3649 | 0.3804 | 0.190* | |
H18C | 0.4147 | 0.2761 | 0.3757 | 0.190* | |
C19 | 0.6591 (3) | 0.22443 (14) | 0.59271 (12) | 0.0384 (5) | |
C20 | 0.8111 (3) | 0.19214 (15) | 0.61572 (13) | 0.0431 (6) | |
C21 | 0.9467 (3) | 0.22243 (18) | 0.65751 (15) | 0.0549 (7) | |
H21A | 0.9506 | 0.2768 | 0.6771 | 0.066* | |
C22 | 1.0729 (3) | 0.1716 (2) | 0.66927 (17) | 0.0656 (8) | |
H22A | 1.1630 | 0.1920 | 0.6968 | 0.079* | |
C23 | 1.0702 (3) | 0.0891 (2) | 0.64087 (18) | 0.0699 (9) | |
H23A | 1.1584 | 0.0560 | 0.6499 | 0.084* | |
C24 | 0.9407 (3) | 0.05644 (18) | 0.60030 (16) | 0.0593 (7) | |
H24A | 0.9387 | 0.0017 | 0.5816 | 0.071* | |
C25 | 0.8115 (3) | 0.10832 (16) | 0.58803 (13) | 0.0444 (6) | |
C26 | 0.5775 (3) | 0.16072 (15) | 0.55434 (12) | 0.0414 (6) | |
C27 | 0.4159 (3) | 0.15280 (15) | 0.52078 (13) | 0.0415 (6) | |
C28 | 0.1776 (3) | 0.22520 (18) | 0.49292 (16) | 0.0582 (7) | |
H28A | 0.1201 | 0.1837 | 0.5166 | 0.070* | |
H28B | 0.1661 | 0.2126 | 0.4404 | 0.070* | |
C29 | 0.1216 (4) | 0.3115 (2) | 0.5050 (2) | 0.0800 (10) | |
H29A | 0.0149 | 0.3156 | 0.4843 | 0.120* | |
H29B | 0.1797 | 0.3518 | 0.4813 | 0.120* | |
H29C | 0.1340 | 0.3230 | 0.5571 | 0.120* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0613 (15) | 0.0828 (19) | 0.0541 (15) | 0.0045 (14) | 0.0213 (12) | −0.0012 (14) |
C1 | 0.0445 (13) | 0.0358 (12) | 0.0368 (13) | −0.0016 (11) | 0.0023 (10) | −0.0019 (10) |
O1 | 0.131 (2) | 0.110 (2) | 0.0739 (16) | 0.0141 (17) | 0.0519 (16) | 0.0261 (15) |
N2 | 0.0568 (13) | 0.0472 (12) | 0.0531 (14) | −0.0065 (11) | 0.0147 (11) | 0.0026 (10) |
C2 | 0.0426 (13) | 0.0351 (12) | 0.0395 (13) | −0.0071 (10) | 0.0026 (11) | −0.0042 (10) |
O2 | 0.168 (3) | 0.117 (2) | 0.0915 (19) | 0.057 (2) | 0.0745 (19) | 0.0109 (16) |
N3 | 0.0516 (13) | 0.0353 (11) | 0.0438 (12) | −0.0017 (9) | 0.0073 (10) | −0.0073 (9) |
O3 | 0.0749 (14) | 0.0936 (16) | 0.0510 (12) | −0.0223 (12) | 0.0125 (10) | 0.0160 (11) |
C3 | 0.0665 (18) | 0.0512 (15) | 0.0460 (16) | 0.0097 (14) | 0.0085 (13) | 0.0022 (12) |
O4 | 0.0659 (13) | 0.0848 (14) | 0.0364 (10) | −0.0177 (11) | 0.0052 (9) | 0.0009 (9) |
C4 | 0.0647 (18) | 0.0619 (17) | 0.0528 (17) | 0.0138 (15) | 0.0168 (14) | −0.0025 (14) |
O5 | 0.0555 (11) | 0.0509 (11) | 0.0695 (13) | −0.0054 (9) | −0.0010 (9) | −0.0194 (9) |
C5 | 0.0477 (15) | 0.0562 (15) | 0.0428 (14) | −0.0033 (13) | 0.0108 (12) | −0.0044 (12) |
O6 | 0.0485 (11) | 0.0417 (10) | 0.0691 (13) | 0.0012 (8) | −0.0038 (9) | −0.0040 (9) |
C6 | 0.0537 (16) | 0.0494 (14) | 0.0436 (15) | −0.0069 (13) | 0.0080 (12) | 0.0046 (12) |
C7 | 0.0471 (14) | 0.0408 (13) | 0.0480 (15) | 0.0002 (11) | 0.0077 (11) | −0.0013 (11) |
C8 | 0.0485 (14) | 0.0363 (12) | 0.0395 (13) | −0.0006 (11) | 0.0078 (11) | −0.0013 (10) |
C9 | 0.0521 (15) | 0.0362 (13) | 0.0477 (15) | −0.0031 (11) | 0.0093 (12) | −0.0071 (11) |
C10 | 0.0652 (18) | 0.0632 (17) | 0.0424 (15) | −0.0160 (14) | 0.0089 (13) | −0.0068 (13) |
C11 | 0.0708 (19) | 0.077 (2) | 0.0483 (16) | −0.0150 (17) | 0.0078 (14) | −0.0159 (15) |
C12 | 0.0602 (18) | 0.0591 (17) | 0.0608 (19) | −0.0081 (14) | 0.0005 (14) | −0.0220 (14) |
C13 | 0.0510 (16) | 0.0396 (14) | 0.075 (2) | −0.0094 (12) | 0.0088 (14) | −0.0102 (13) |
C14 | 0.0500 (15) | 0.0401 (13) | 0.0537 (16) | 0.0002 (12) | 0.0079 (12) | −0.0026 (11) |
C15 | 0.0494 (14) | 0.0417 (13) | 0.0406 (14) | −0.0012 (12) | 0.0084 (11) | 0.0007 (11) |
C16 | 0.0536 (16) | 0.0558 (16) | 0.0466 (15) | −0.0012 (13) | 0.0093 (13) | 0.0070 (13) |
C17 | 0.087 (2) | 0.135 (3) | 0.0402 (17) | −0.019 (2) | −0.0032 (16) | 0.0002 (19) |
C18 | 0.105 (3) | 0.185 (5) | 0.088 (3) | −0.040 (3) | 0.004 (3) | −0.023 (3) |
C19 | 0.0450 (14) | 0.0379 (12) | 0.0326 (12) | −0.0029 (11) | 0.0066 (10) | −0.0029 (10) |
C20 | 0.0454 (14) | 0.0488 (14) | 0.0355 (13) | 0.0005 (12) | 0.0073 (11) | 0.0003 (11) |
C21 | 0.0520 (16) | 0.0590 (16) | 0.0514 (16) | −0.0032 (14) | 0.0003 (13) | −0.0079 (13) |
C22 | 0.0505 (17) | 0.075 (2) | 0.068 (2) | −0.0010 (16) | −0.0007 (14) | −0.0014 (16) |
C23 | 0.0517 (18) | 0.076 (2) | 0.080 (2) | 0.0135 (16) | 0.0053 (16) | 0.0071 (17) |
C24 | 0.0564 (17) | 0.0507 (16) | 0.0708 (19) | 0.0089 (14) | 0.0100 (15) | −0.0001 (14) |
C25 | 0.0457 (14) | 0.0463 (14) | 0.0417 (14) | −0.0009 (12) | 0.0081 (11) | 0.0025 (11) |
C26 | 0.0454 (14) | 0.0472 (14) | 0.0316 (12) | −0.0009 (11) | 0.0060 (10) | 0.0010 (10) |
C27 | 0.0509 (15) | 0.0385 (13) | 0.0348 (13) | −0.0035 (12) | 0.0057 (11) | −0.0028 (10) |
C28 | 0.0465 (16) | 0.0606 (17) | 0.0643 (18) | −0.0006 (13) | −0.0016 (13) | −0.0003 (14) |
C29 | 0.070 (2) | 0.068 (2) | 0.099 (3) | 0.0182 (17) | 0.0043 (19) | 0.0002 (18) |
N1—O1 | 1.201 (3) | C10—H10A | 0.9300 |
N1—O2 | 1.208 (3) | C11—C12 | 1.386 (4) |
N1—C5 | 1.469 (3) | C11—H11A | 0.9300 |
C1—C8 | 1.500 (3) | C12—C13 | 1.353 (4) |
C1—C2 | 1.524 (3) | C12—H12A | 0.9300 |
C1—C19 | 1.528 (3) | C13—C14 | 1.388 (4) |
C1—H1A | 0.9800 | C13—H13A | 0.9300 |
N2—C14 | 1.356 (3) | C15—C16 | 1.455 (3) |
N2—C15 | 1.366 (3) | C17—C18 | 1.408 (5) |
N2—H2A | 0.8600 | C17—H17A | 0.9700 |
C2—C3 | 1.380 (3) | C17—H17B | 0.9700 |
C2—C7 | 1.388 (3) | C18—H18A | 0.9600 |
N3—C25 | 1.356 (3) | C18—H18B | 0.9600 |
N3—C26 | 1.369 (3) | C18—H18C | 0.9600 |
N3—H3A | 0.8600 | C19—C26 | 1.367 (3) |
O3—C16 | 1.210 (3) | C19—C20 | 1.434 (3) |
C3—C4 | 1.375 (3) | C20—C21 | 1.399 (3) |
C3—H3B | 0.9300 | C20—C25 | 1.418 (3) |
O4—C16 | 1.330 (3) | C21—C22 | 1.361 (4) |
O4—C17 | 1.452 (3) | C21—H21A | 0.9300 |
C4—C5 | 1.367 (4) | C22—C23 | 1.402 (4) |
C4—H4A | 0.9300 | C22—H22A | 0.9300 |
O5—C27 | 1.204 (3) | C23—C24 | 1.363 (4) |
C5—C6 | 1.374 (3) | C23—H23A | 0.9300 |
O6—C27 | 1.322 (3) | C24—C25 | 1.392 (4) |
O6—C28 | 1.443 (3) | C24—H24A | 0.9300 |
C6—C7 | 1.395 (3) | C26—C27 | 1.465 (3) |
C6—H6A | 0.9300 | C28—C29 | 1.478 (4) |
C7—H7A | 0.9300 | C28—H28A | 0.9700 |
C8—C15 | 1.389 (3) | C28—H28B | 0.9700 |
C8—C9 | 1.439 (3) | C29—H29A | 0.9600 |
C9—C14 | 1.414 (3) | C29—H29B | 0.9600 |
C9—C10 | 1.414 (3) | C29—H29C | 0.9600 |
C10—C11 | 1.360 (4) | ||
O1—N1—O2 | 122.1 (3) | N2—C15—C16 | 116.7 (2) |
O1—N1—C5 | 119.7 (3) | C8—C15—C16 | 133.3 (2) |
O2—N1—C5 | 118.1 (3) | O3—C16—O4 | 123.4 (3) |
C8—C1—C2 | 111.17 (18) | O3—C16—C15 | 122.5 (3) |
C8—C1—C19 | 113.74 (19) | O4—C16—C15 | 114.1 (2) |
C2—C1—C19 | 112.73 (18) | C18—C17—O4 | 110.9 (3) |
C8—C1—H1A | 106.2 | C18—C17—H17A | 109.5 |
C2—C1—H1A | 106.2 | O4—C17—H17A | 109.5 |
C19—C1—H1A | 106.2 | C18—C17—H17B | 109.5 |
C14—N2—C15 | 109.9 (2) | O4—C17—H17B | 109.5 |
C14—N2—H2A | 125.1 | H17A—C17—H17B | 108.0 |
C15—N2—H2A | 125.1 | C17—C18—H18A | 109.5 |
C3—C2—C7 | 118.3 (2) | C17—C18—H18B | 109.5 |
C3—C2—C1 | 119.3 (2) | H18A—C18—H18B | 109.5 |
C7—C2—C1 | 122.4 (2) | C17—C18—H18C | 109.5 |
C25—N3—C26 | 109.01 (19) | H18A—C18—H18C | 109.5 |
C25—N3—H3A | 125.5 | H18B—C18—H18C | 109.5 |
C26—N3—H3A | 125.5 | C26—C19—C20 | 106.4 (2) |
C4—C3—C2 | 122.0 (2) | C26—C19—C1 | 125.5 (2) |
C4—C3—H3B | 119.0 | C20—C19—C1 | 128.0 (2) |
C2—C3—H3B | 119.0 | C21—C20—C25 | 117.8 (2) |
C16—O4—C17 | 116.9 (2) | C21—C20—C19 | 135.9 (2) |
C5—C4—C3 | 118.1 (3) | C25—C20—C19 | 106.3 (2) |
C5—C4—H4A | 121.0 | C22—C21—C20 | 119.4 (3) |
C3—C4—H4A | 121.0 | C22—C21—H21A | 120.3 |
C4—C5—C6 | 122.5 (2) | C20—C21—H21A | 120.3 |
C4—C5—N1 | 119.2 (2) | C21—C22—C23 | 121.6 (3) |
C6—C5—N1 | 118.2 (2) | C21—C22—H22A | 119.2 |
C27—O6—C28 | 118.4 (2) | C23—C22—H22A | 119.2 |
C5—C6—C7 | 118.2 (2) | C24—C23—C22 | 121.3 (3) |
C5—C6—H6A | 120.9 | C24—C23—H23A | 119.4 |
C7—C6—H6A | 120.9 | C22—C23—H23A | 119.4 |
C2—C7—C6 | 120.6 (2) | C23—C24—C25 | 117.4 (3) |
C2—C7—H7A | 119.7 | C23—C24—H24A | 121.3 |
C6—C7—H7A | 119.7 | C25—C24—H24A | 121.3 |
C15—C8—C9 | 105.0 (2) | N3—C25—C24 | 129.3 (2) |
C15—C8—C1 | 126.4 (2) | N3—C25—C20 | 108.1 (2) |
C9—C8—C1 | 128.5 (2) | C24—C25—C20 | 122.6 (2) |
C14—C9—C10 | 116.9 (2) | C19—C26—N3 | 110.2 (2) |
C14—C9—C8 | 107.7 (2) | C19—C26—C27 | 132.7 (2) |
C10—C9—C8 | 135.4 (2) | N3—C26—C27 | 117.0 (2) |
C11—C10—C9 | 119.0 (3) | O5—C27—O6 | 123.8 (2) |
C11—C10—H10A | 120.5 | O5—C27—C26 | 123.7 (2) |
C9—C10—H10A | 120.5 | O6—C27—C26 | 112.5 (2) |
C10—C11—C12 | 122.3 (3) | O6—C28—C29 | 106.4 (2) |
C10—C11—H11A | 118.8 | O6—C28—H28A | 110.4 |
C12—C11—H11A | 118.8 | C29—C28—H28A | 110.4 |
C13—C12—C11 | 120.9 (3) | O6—C28—H28B | 110.4 |
C13—C12—H12A | 119.5 | C29—C28—H28B | 110.4 |
C11—C12—H12A | 119.5 | H28A—C28—H28B | 108.6 |
C12—C13—C14 | 117.9 (3) | C28—C29—H29A | 109.5 |
C12—C13—H13A | 121.0 | C28—C29—H29B | 109.5 |
C14—C13—H13A | 121.0 | H29A—C29—H29B | 109.5 |
N2—C14—C13 | 129.8 (2) | C28—C29—H29C | 109.5 |
N2—C14—C9 | 107.4 (2) | H29A—C29—H29C | 109.5 |
C13—C14—C9 | 122.8 (2) | H29B—C29—H29C | 109.5 |
N2—C15—C8 | 110.0 (2) | ||
C8—C1—C2—C3 | 69.9 (3) | C9—C8—C15—C16 | −175.6 (3) |
C19—C1—C2—C3 | −161.1 (2) | C1—C8—C15—C16 | 6.7 (4) |
C8—C1—C2—C7 | −107.7 (2) | C17—O4—C16—O3 | 0.0 (4) |
C19—C1—C2—C7 | 21.4 (3) | C17—O4—C16—C15 | 177.5 (3) |
C7—C2—C3—C4 | 4.9 (4) | N2—C15—C16—O3 | 9.9 (4) |
C1—C2—C3—C4 | −172.8 (2) | C8—C15—C16—O3 | −172.8 (3) |
C2—C3—C4—C5 | −1.4 (4) | N2—C15—C16—O4 | −167.6 (2) |
C3—C4—C5—C6 | −2.9 (4) | C8—C15—C16—O4 | 9.8 (4) |
C3—C4—C5—N1 | 177.1 (2) | C16—O4—C17—C18 | −173.4 (3) |
O1—N1—C5—C4 | 172.3 (3) | C8—C1—C19—C26 | −150.9 (2) |
O2—N1—C5—C4 | −10.4 (4) | C2—C1—C19—C26 | 81.3 (3) |
O1—N1—C5—C6 | −7.7 (4) | C8—C1—C19—C20 | 30.6 (3) |
O2—N1—C5—C6 | 169.7 (3) | C2—C1—C19—C20 | −97.1 (3) |
C4—C5—C6—C7 | 3.4 (4) | C26—C19—C20—C21 | −177.8 (3) |
N1—C5—C6—C7 | −176.6 (2) | C1—C19—C20—C21 | 0.9 (4) |
C3—C2—C7—C6 | −4.3 (4) | C26—C19—C20—C25 | 0.6 (2) |
C1—C2—C7—C6 | 173.3 (2) | C1—C19—C20—C25 | 179.3 (2) |
C5—C6—C7—C2 | 0.3 (4) | C25—C20—C21—C22 | 0.7 (4) |
C2—C1—C8—C15 | −154.3 (2) | C19—C20—C21—C22 | 179.0 (3) |
C19—C1—C8—C15 | 77.2 (3) | C20—C21—C22—C23 | −0.4 (4) |
C2—C1—C8—C9 | 28.5 (3) | C21—C22—C23—C24 | −0.1 (5) |
C19—C1—C8—C9 | −100.0 (3) | C22—C23—C24—C25 | 0.2 (4) |
C15—C8—C9—C14 | −1.3 (3) | C26—N3—C25—C24 | 178.9 (2) |
C1—C8—C9—C14 | 176.3 (2) | C26—N3—C25—C20 | 0.1 (3) |
C15—C8—C9—C10 | 178.7 (3) | C23—C24—C25—N3 | −178.5 (3) |
C1—C8—C9—C10 | −3.7 (5) | C23—C24—C25—C20 | 0.2 (4) |
C14—C9—C10—C11 | 1.1 (4) | C21—C20—C25—N3 | 178.3 (2) |
C8—C9—C10—C11 | −178.8 (3) | C19—C20—C25—N3 | −0.4 (3) |
C9—C10—C11—C12 | −0.6 (4) | C21—C20—C25—C24 | −0.6 (4) |
C10—C11—C12—C13 | −0.8 (5) | C19—C20—C25—C24 | −179.4 (2) |
C11—C12—C13—C14 | 1.6 (4) | C20—C19—C26—N3 | −0.6 (3) |
C15—N2—C14—C13 | −178.3 (2) | C1—C19—C26—N3 | −179.29 (19) |
C15—N2—C14—C9 | 1.0 (3) | C20—C19—C26—C27 | 176.1 (2) |
C12—C13—C14—N2 | 178.2 (3) | C1—C19—C26—C27 | −2.6 (4) |
C12—C13—C14—C9 | −1.0 (4) | C25—N3—C26—C19 | 0.3 (3) |
C10—C9—C14—N2 | −179.8 (2) | C25—N3—C26—C27 | −176.9 (2) |
C8—C9—C14—N2 | 0.2 (3) | C28—O6—C27—O5 | −1.9 (4) |
C10—C9—C14—C13 | −0.4 (4) | C28—O6—C27—C26 | 178.7 (2) |
C8—C9—C14—C13 | 179.6 (2) | C19—C26—C27—O5 | −174.8 (3) |
C14—N2—C15—C8 | −1.9 (3) | N3—C26—C27—O5 | 1.7 (3) |
C14—N2—C15—C16 | 176.1 (2) | C19—C26—C27—O6 | 4.6 (4) |
C9—C8—C15—N2 | 1.9 (3) | N3—C26—C27—O6 | −178.84 (19) |
C1—C8—C15—N2 | −175.8 (2) | C27—O6—C28—C29 | −179.0 (2) |
Cg1, Cg3 and Cg5 are the centroids of the N2/C8/C9/C14/C15 pyrrole, C2–C7 benzene and C21–C26 benzene rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O3i | 0.86 | 2.30 | 3.003 (3) | 139 |
N3—H3A···O5ii | 0.86 | 2.14 | 2.956 (3) | 158 |
C11—H11A···O5iii | 0.93 | 2.58 | 3.501 (4) | 171 |
C17—H17B···O1iv | 0.97 | 2.58 | 3.261 (5) | 128 |
C29—H29A···O1v | 0.96 | 2.51 | 3.281 (4) | 137 |
C10—H10A···Cg3 | 0.93 | 2.69 | 3.431 (3) | 138 |
C21—H21A···Cg1 | 0.93 | 2.88 | 3.570 (3) | 132 |
C28—H28A···Cg5vi | 0.97 | 2.85 | 3.718 (3) | 150 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+1, −y, −z+1; (iii) x+1/2, −y+1/2, z+1/2; (iv) x+1/2, −y+1/2, z−1/2; (v) x−1/2, −y+1/2, z−1/2; (vi) x−1, y, z. |
Acknowledgements
The authors thank the Center of Testing and Analysis, Nanjing University, for support.
Funding information
Funding for this research was provided by: University of Natural Science Foundation in Jiangsu Province (grant No. 17KJB320001); Top-notch Academic Programs Project of Jiangsu Higher Education Institutions (grant No. PPZY2015B179); Training program of Students innovation and entrepreneurship in Jiangsu Province (grant No. 201712920001Y); Qing Lan Project of Jiangsu Province .
References
Chang, Y.-C., Riby, J., Chang, G. H., Peng, G.-F., Firestone, G. & Bjeldanes, L. F. (1999). Biochem. Pharmacol. 58, 825–834. Web of Science CrossRef PubMed CAS
Enraf–Nonius (1994). CAD-4 EXPRESS. Enraf–Nonius, Delft, The Netherlands.
Ge, X., Fares, F. A. & Yannai, S. (1999). Anticancer Res. 19, 3199–3203. Web of Science PubMed CAS
Harms, K. & Wocadlo, S. (1995). XCAD4. University of Marburg, Germany.
Li, Y., Sun, H., Jiang, H., Xu, N. & Xu, H. (2014). Acta Cryst. E70, 259–261. CSD CrossRef IUCr Journals
Lu, X.-H., Sun, H.-S. & Hu, J. (2014). Acta Cryst. E70, 593–595. CSD CrossRef IUCr Journals
Ni, Y.-C. (2008). Curr. Med. Imaging Rev. 4, 96–112. Web of Science CrossRef CAS
North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359. CrossRef IUCr Journals Web of Science
Porter, J. K., Bacon, C. W., Robbins, J. D., Himmelsbach, D. S. & Higman, H. C. (1977). J. Agric. Food Chem. 25, 88–93. CrossRef CAS Web of Science
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals
Sun, H.-S., Li, Y., Jiang, H., Xu, N. & Xu, H. (2015). Acta Cryst. E71, 1140–1142. Web of Science CSD CrossRef IUCr Journals
Sun, H.-S., Li, Y.-L., Xu, N., Xu, H. & Zhang, J.-D. (2012). Acta Cryst. E68, o2764. CSD CrossRef IUCr Journals
Sundberg, R. J. (1996). The Chemistry of Indoles, p. 113 New York: Academic Press.
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