research communications
(1R,2S,5R)-5-Methyl-2-[2-(4-nitrophenyl)propan-2-yl]cyclohexyl 2-(4-methoxyphenyl)-2,5-dihydro-1H-pyrrole-1-carboxylate: and Hirshfeld analysis
aLaboratório de Cristalografia, Esterodinâmica e Modelagem Molecular, Departamento de Química, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil, bInstituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil, cInstituto de Química, Universidade Estadual de Campinas, UNICAMP, C.P. 6154, CEP. 13084-971, Campinas, São Paulo, Brazil, dDepartment of Physics, Bhavan's Sheth R. A. College of Science, Ahmedabad, Gujarat 380001, India, and eCentre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
*Correspondence e-mail: julio@power.ufscar.br
In the title compound, C28H34N2O5, the adjacent ester and nitrobenzene substituents are connected via an intramolecular methylene-C—H⋯π(nitrobenzene) interaction and the molecule approximates to a U-shape. The dihydropyrrole ring (r.m.s. deviation = 0.003 Å) is almost co-planar with the carboxylate residue [Cm—N—C1—Oc (m = methine, c = carboxyl) torsion angle = 1.8 (4)°] but is orthogonal to the 4-methoxybenzene ring [dihedral angle = 84.34 (17)°]. In the crystal, methylene-C—H⋯O(carbonyl) interactions lead to linear supramolecular chains along the b-axis direction, which pack without directional interactions between them. The analysis of the calculated Hirshfeld surface points to the importance of weak interatomic H⋯H, O⋯H/H⋯O and C⋯H/H⋯C contacts in the crystal.
CCDC reference: 1825237
1. Chemical context
The reaction of an unsaturated halide species with an alkene, in the presence of both a base and a organopalladium catalyst, to form a substituted alkene, is termed the Heck reaction (Heck, 1982; Crisp, 1998). As part of our investigations into the scope of the Heck reaction in the total, enantioselective and efficient synthesis of pyrrolidine such as the natural product (–)-codonopsinine (Severino & Correia, 2001), an enecarbamate containing the chiral auxiliary residue, 8-(4-nitrophenyl)menthol, was submitted to a Heck arylation reaction with 4-methoxyphenyldiazonium tetrafluoroborate. The reaction yielded the title compound, 8-(4-nitrophenyl)menthyl 2-(4-methoxyphenyl)pyrroline-3-carboxylate, (I), as the sole crystalline material (Machado, 2001). Herein, the crystal and molecular structures of (I) are described along with an analysis of the calculated Hirshfeld surfaces.
2. Structural commentary
The molecular structure of (I), Fig. 1, comprises a 1-, 2- and 5-substituted cyclohexyl ring (chair conformation) with the at these equatorially substituted centres, i.e. C14, C15 and C18, established from the synthesis, being R, S and R, respectively. The dihydropyrrole ring is essentially planar, with an r.m.s. deviation of 0.003 Å for the five constituent atoms; the N1 and C5 atoms lie 0.037 (2) and 0.030 (3) Å to opposite sides of the plane. The of the C2 centre is R. The carboxylate residue is almost co-planar with the five-membered pyrrole ring as seen in the value of the C2—N1—C13—O2 torsion angle of 1.8 (4)°. However, the appended 4-methoxybenzene ring is almost orthogonal to the pyrrole ring, forming a dihedral angle of 84.34 (17)°; the methoxy group is co-planar with the benzene ring with the C12—O3—C9—C10 torsion angle being 178.0 (4)°. In the same way, the nitro group is co-planar with the benzene ring to which it is connected with the O5—N2—C27—C28 torsion angle being 1.2 (5)°. In the molecule, there is a close pyrrole-methylene-C5—H⋯π(C24–C29) interaction, Table 1, which connects the substituents at the cyclohexyl-C14 and C15 atoms which lie to the same side of the molecule and which define a shape corresponding to the letter U.
3. Supramolecular features
The molecular packing of (I) features a number of weak non-covalent contacts as discussed below in the Hirshfeld surface analysis (§4). In accord with the distance criteria assumed in PLATON (Spek, 2009), there is only one directional interaction of note, Table 1. Thus, methylene-C19—H⋯O2(carbonyl) interactions connect molecules into a linear supramolecular chain along the b-axis direction, Fig. 2a. These assemble in the crystal with no directional interactions between them, Fig. 2b.
4. Hirshfeld surface analysis
The Hirshfeld surfaces calculated for (I) were conducted as reported recently for a related organic molecule (Zukerman-Schpector et al., 2017) and provide information on the influence of short interatomic non-bonded contacts upon the molecular packing.
With reference to Fig. 3, in addition to the bright-red spots near the methylene-H19B and carbonyl-O2 atoms, representing the C—H⋯O interaction listed in Table 1, the diminutive-red spots near the O3, C9 and H17B atoms, corresponding to short interatomic O3⋯H17B and C9⋯H17B contacts (Table 2), on the Hirshfeld surface mapped over dnorm suggest they also have some influence on the molecular packing in the crystal. The effect of other short interatomic O⋯H/H⋯O and C⋯H/H⋯C contacts listed in Table 2 are also viewed as faint-red spots near the O3, H4, O5 and H20B atoms in Fig. 3. The influence of the short interatomic O⋯H, C⋯H and H⋯H contacts in the molecular packing are also illustrated in Fig. 4a and b, which show the Hirshfeld surface mapped over the shape-index property and dnorm, respectively. The intramolecular C—H⋯π contact between the pyrrole-H5A atom and the nitrobenzene ring [H5A⋯Cg(C24–C29) = 2.67 Å, C5⋯Cg(C24–C29) = 3.612 (3) Å and C—H5A⋯Cg(C24–C29) angle = 163°] is shown as a black-dotted line within the Hirshfeld surfaces mapped over the electrostatic potential in Fig. 5.
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The overall two-dimensional fingerprint plot for (I), Fig. 6a, and those delineated into H⋯H, O⋯H/H⋯O and C⋯H/H⋯C contacts (McKinnon et al., 2007) are illustrated in Fig. 6b-d, respectively. The fingerprint plots also reflect the presence of the short interatomic contacts on the packing, Table 2. This is also evident from the percentage contribution from different interatomic contacts to the Hirshfeld surface summarized in Table 3: the H⋯H, O⋯H/H⋯O and C⋯H/H⋯C interatomic contacts make the greatest contribution to the Hirshfeld surface and account for 97.9% of the overall surface. The broad feather-like distribution of points with a peak at de + di ∼2.3 Å in the fingerprint plot delineated into H⋯H contacts in Fig. 5b represent H⋯H contacts in the structure and make the greatest, i.e. 61.7%, contribution to the surface. The interatomic O⋯H/H⋯O contacts having a 23.9% contribution to the Hirshfeld surface arise from the C—H⋯O contact (Table 1) and short interatomic O⋯H/H⋯O contacts (Table 2), and are viewed as the pair of green aligned points beginning at de + di ∼2.6 Å and a pair of jaw-shaped distribution of points in the range de + di ∼2.5–2.6 Å in Fig. 6c. The points distributed around the pair of forceps-like peaks at de + di ∼2.8 Å in the fingerprint plot delineated into C⋯H/H⋯C contacts (Fig. 6d) represent the formation of such intra- and inter-layer contacts in the crystal. The small contribution from other interatomic contacts summarized in Table 3 appear to have a negligible impact on the molecular packing.
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5. Database survey
The (1R,2S,5R)-menthyl substrate is important as a chiral source for the synthesis of natural products and, as such, has been found in a number of crystal structures related to (I). Owing to the dictates of the at the C1 and C2 positions, a parallel alignment of the substituents at these positions usually result in U-shaped geometries (Aoyagi et al., 1998; Singh et al., 1990; Streith et al., 1995), except in circumstances where precludes such an arrangement (Comins & Killpack, 1992).
6. Synthesis and crystallization
As detailed previously (Machado, 2001), for the Heck arylation of (1R,2S,5R)-5-methyl-2-[2-(4-nitrophenyl)propan-2-yl]cyclohexyl 2,3-dihydro-1H-pyrrole-1-carboxylate, a stoichiometric quantity of 4-methoxyphenyldiazonium tetrafluoroborate was used along with 1 mol equivalent of Pd0 and 400 mol equivalent of sodium acetate. The reaction was conducted in acetonitrile at room temperature for 15 min, yielding (1R,2S,5R)-5-methyl-2-[2-(4-nitrophenyl)propan-2-yl]cyclohexyl (2S)-2-(4-methoxyphenyl)-2,5-dihydro-1H-pyrrole-1-carboxylate and the title compound, (I), the latter being the only crystalline product, obtained as irregular colourless chunks by slow evaporation of an n-hexane–ethyl acetate solution (8:2 v/v). M.p 378–380 K. ESI–MS (m/z) calculatedd for C28H34N2O5 [M]+ 478.24677, found 478.24676. [α]D20 = +85.6 9c = 0.7; ethylacetate). RF = 0.40 (hexane–ethyl acetate, 8:2 v/v).
The reported 1H and 13C NMR reflect the presence of two conformational rotamers in solution. 1H NMR (500 MHz, CCl4): δ [8.01 (d, J = 9 Hz) + 7.94 (d, J = 9 Hz) = 2H]; [7.43 (d, J = 9 Hz) + 7.16 (d, J = 9 Hz) = 2H]; [7.05 (d, J = 9 Hz) + 7.00 (d, J = 9 Hz) = 2H]; [6.77 (d, J = 9 Hz) + 6.70 (d, J = 9 Hz) = 2H]; 5.88 (br d, J = 6 Hz) + 5.67–5.59 (m) = 1H]; [5.67–5.59 (m) + 5.51 (dd, J = 7 Hz, 1 Hz) = 1H]; [5.27 (br s) + 5.19 (br s) = 1H]; 4.70 (td, J = 10 Hz and 5 Hz, 1H); [4.36 (br d, J = 15 Hz) + 4.21 (m) + 3.53 (dd, J = 15 and 5Hz) + 2.59 (dd, J = 15 and 2 Hz) = 2H]; [3.77 (s) + 3.72 (s) = 3H]; 2.04–0.49 (m, 11H); [1.43 (s) + 1.25 (s) = 3H]; [1.21 (s) + 1.11 (s) = 3H]. 13C NMR (75.5 MHz, CCl4): δ 159.1, 158.5, 151.6, 132.2, 130.9, 130.5, 128.0, 127.8, 125.9, 125.5, 123.9, 123.7, 122.3, 113.3, 113.1, 95.8, 73.5, 72.7, 67.3, 66.8, 54.6, 54.3, 51.7, 51.5, 42.4, 39.9, 34.3, 31.1, 30.2, 29.4, 26.0, 21.6, 21.5.
7. details
Crystal data, data collection and structure . The C-bound H atoms were placed in calculated positions (C—H = 0.93–0.98 Å) and were included in the in the riding model approximation, with Uiso(H) set to 1.2–1.5Ueq(C).
details are summarized in Table 4Supporting information
CCDC reference: 1825237
https://doi.org/10.1107/S2056989018003092/hb7734sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989018003092/hb7734Isup2.hkl
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989); cell
CAD-4 EXPRESS (Enraf–Nonius, 1989); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SIR2014 (Burla et al., 2015); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: MarvinSketch (ChemAxon, 2010) and publCIF (Westrip, 2010).C28H34N2O5 | F(000) = 512 |
Mr = 478.57 | Dx = 1.211 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.3142 (10) Å | Cell parameters from 25 reflections |
b = 6.1114 (8) Å | θ = 11.8–18.2° |
c = 20.844 (3) Å | µ = 0.08 mm−1 |
β = 92.83 (1)° | T = 293 K |
V = 1312.3 (3) Å3 | Irregular, colourles |
Z = 2 | 0.40 × 0.25 × 0.20 mm |
Enraf–Nonius TurboCAD4 diffractometer | Rint = 0.054 |
Radiation source: Enraf–Nonius FR590 | θmax = 30.0°, θmin = 2.3° |
non–profiled ω/2θ scans | h = −14→14 |
Absorption correction: ψ scan (CAD-4 EXPRESS; Enraf–Nonius, 1989) | k = 0→8 |
l = −29→0 | |
4246 measured reflections | 3 standard reflections every 60 min |
4145 independent reflections | intensity decay: 1% |
2310 reflections with I > 2σ(I) |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.056 | w = 1/[σ2(Fo2) + (0.0751P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.144 | (Δ/σ)max < 0.001 |
S = 0.98 | Δρmax = 0.27 e Å−3 |
4145 reflections | Δρmin = −0.16 e Å−3 |
320 parameters | Absolute structure: No quotients, so Flack parameter determined by classical intensity fit |
1 restraint | Absolute structure parameter: −1.1 (16) |
Primary atom site location: structure-invariant direct methods |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.8239 (2) | 0.1157 (4) | 0.71804 (11) | 0.0477 (6) | |
N2 | 0.7587 (3) | −0.3619 (8) | 0.48894 (14) | 0.0797 (11) | |
O1 | 0.66501 (17) | −0.1036 (3) | 0.74757 (9) | 0.0433 (5) | |
O2 | 0.6807 (2) | 0.2399 (4) | 0.78790 (11) | 0.0609 (6) | |
O3 | 1.1526 (2) | 0.4302 (5) | 0.96516 (11) | 0.0708 (7) | |
O4 | 0.8084 (4) | −0.5387 (8) | 0.48479 (16) | 0.1195 (13) | |
O5 | 0.7743 (3) | −0.2175 (7) | 0.45058 (14) | 0.1154 (13) | |
C2 | 0.9005 (3) | 0.3194 (5) | 0.71908 (15) | 0.0505 (8) | |
H2 | 0.8431 | 0.4434 | 0.7086 | 0.061* | |
C3 | 0.9859 (3) | 0.2781 (7) | 0.66428 (16) | 0.0667 (10) | |
H3 | 1.0448 | 0.3799 | 0.6498 | 0.080* | |
C4 | 0.9688 (3) | 0.0841 (8) | 0.63905 (16) | 0.0678 (11) | |
H4 | 1.0140 | 0.0321 | 0.6047 | 0.081* | |
C5 | 0.8683 (3) | −0.0446 (6) | 0.67187 (15) | 0.0553 (8) | |
H5A | 0.7983 | −0.0899 | 0.6420 | 0.066* | |
H5B | 0.9055 | −0.1725 | 0.6933 | 0.066* | |
C6 | 0.9711 (3) | 0.3593 (5) | 0.78309 (15) | 0.0475 (7) | |
C7 | 0.9543 (3) | 0.5462 (6) | 0.81758 (16) | 0.0564 (8) | |
H7 | 0.9012 | 0.6560 | 0.7999 | 0.068* | |
C8 | 1.0136 (3) | 0.5782 (6) | 0.87811 (16) | 0.0605 (9) | |
H8 | 1.0002 | 0.7076 | 0.9003 | 0.073* | |
C9 | 1.0914 (3) | 0.4197 (6) | 0.90480 (15) | 0.0546 (8) | |
C10 | 1.1126 (3) | 0.2279 (7) | 0.87032 (17) | 0.0638 (9) | |
H10 | 1.1667 | 0.1196 | 0.8880 | 0.077* | |
C11 | 1.0541 (3) | 0.1994 (6) | 0.81092 (16) | 0.0574 (8) | |
H11 | 1.0693 | 0.0715 | 0.7883 | 0.069* | |
C12 | 1.1372 (5) | 0.6248 (10) | 1.0010 (2) | 0.1029 (17) | |
H12A | 1.1692 | 0.7469 | 0.9775 | 0.154* | |
H12B | 1.1851 | 0.6128 | 1.0415 | 0.154* | |
H12C | 1.0469 | 0.6465 | 1.0082 | 0.154* | |
C13 | 0.7197 (3) | 0.0966 (5) | 0.75437 (13) | 0.0409 (6) | |
C14 | 0.5631 (2) | −0.1508 (5) | 0.79199 (12) | 0.0399 (6) | |
H14 | 0.5190 | −0.0143 | 0.8024 | 0.048* | |
C15 | 0.4655 (2) | −0.3067 (5) | 0.75898 (12) | 0.0386 (6) | |
H15 | 0.5117 | −0.4430 | 0.7505 | 0.046* | |
C16 | 0.3628 (3) | −0.3597 (7) | 0.80803 (14) | 0.0563 (8) | |
H16A | 0.3163 | −0.2271 | 0.8181 | 0.068* | |
H16B | 0.3006 | −0.4633 | 0.7892 | 0.068* | |
C17 | 0.4248 (3) | −0.4550 (6) | 0.86912 (15) | 0.0604 (9) | |
H17A | 0.4659 | −0.5927 | 0.8592 | 0.072* | |
H17B | 0.3576 | −0.4852 | 0.8989 | 0.072* | |
C18 | 0.5250 (3) | −0.3043 (6) | 0.90138 (13) | 0.0568 (8) | |
H18 | 0.4813 | −0.1693 | 0.9135 | 0.068* | |
C19 | 0.6253 (3) | −0.2468 (6) | 0.85248 (13) | 0.0474 (7) | |
H19A | 0.6868 | −0.1424 | 0.8715 | 0.057* | |
H19B | 0.6729 | −0.3777 | 0.8418 | 0.057* | |
C20 | 0.5893 (4) | −0.4048 (9) | 0.96163 (17) | 0.0898 (14) | |
H20A | 0.5242 | −0.4410 | 0.9912 | 0.135* | |
H20B | 0.6493 | −0.3018 | 0.9813 | 0.135* | |
H20C | 0.6351 | −0.5350 | 0.9504 | 0.135* | |
C21 | 0.4069 (3) | −0.2208 (5) | 0.69281 (13) | 0.0416 (6) | |
C22 | 0.3634 (3) | 0.0191 (5) | 0.69810 (16) | 0.0530 (8) | |
H22A | 0.4380 | 0.1103 | 0.7068 | 0.079* | |
H22B | 0.3051 | 0.0330 | 0.7323 | 0.079* | |
H22C | 0.3201 | 0.0636 | 0.6584 | 0.079* | |
C23 | 0.2859 (3) | −0.3568 (6) | 0.67073 (15) | 0.0565 (8) | |
H23A | 0.2172 | −0.3298 | 0.6991 | 0.085* | |
H23B | 0.3075 | −0.5096 | 0.6716 | 0.085* | |
H23C | 0.2582 | −0.3151 | 0.6278 | 0.085* | |
C24 | 0.5042 (2) | −0.2514 (5) | 0.63983 (12) | 0.0415 (6) | |
C25 | 0.5699 (3) | −0.4489 (5) | 0.63403 (14) | 0.0511 (7) | |
H25 | 0.5574 | −0.5593 | 0.6638 | 0.061* | |
C26 | 0.6534 (3) | −0.4855 (6) | 0.58506 (14) | 0.0573 (8) | |
H26 | 0.6975 | −0.6177 | 0.5822 | 0.069* | |
C27 | 0.6697 (3) | −0.3229 (7) | 0.54084 (13) | 0.0557 (8) | |
C28 | 0.6056 (3) | −0.1281 (7) | 0.54376 (14) | 0.0608 (9) | |
H28 | 0.6167 | −0.0207 | 0.5129 | 0.073* | |
C29 | 0.5237 (3) | −0.0928 (6) | 0.59349 (14) | 0.0530 (8) | |
H29 | 0.4806 | 0.0405 | 0.5959 | 0.064* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0418 (12) | 0.0409 (14) | 0.0610 (14) | −0.0140 (12) | 0.0090 (11) | −0.0041 (13) |
N2 | 0.078 (2) | 0.115 (3) | 0.0474 (16) | 0.007 (2) | 0.0169 (14) | −0.005 (2) |
O1 | 0.0397 (10) | 0.0395 (11) | 0.0520 (10) | −0.0127 (9) | 0.0150 (8) | −0.0037 (9) |
O2 | 0.0527 (12) | 0.0405 (12) | 0.0911 (16) | −0.0101 (11) | 0.0204 (11) | −0.0158 (13) |
O3 | 0.0637 (13) | 0.088 (2) | 0.0603 (13) | −0.0025 (15) | −0.0009 (11) | 0.0014 (14) |
O4 | 0.141 (3) | 0.129 (3) | 0.094 (2) | 0.037 (3) | 0.059 (2) | −0.009 (2) |
O5 | 0.131 (3) | 0.142 (3) | 0.0780 (19) | 0.015 (3) | 0.0538 (19) | 0.027 (2) |
C2 | 0.0430 (15) | 0.0399 (17) | 0.0684 (19) | −0.0163 (13) | −0.0002 (14) | 0.0094 (14) |
C3 | 0.0557 (19) | 0.082 (3) | 0.064 (2) | −0.034 (2) | 0.0138 (16) | 0.015 (2) |
C4 | 0.0537 (18) | 0.094 (3) | 0.0569 (19) | −0.024 (2) | 0.0169 (15) | 0.004 (2) |
C5 | 0.0540 (17) | 0.060 (2) | 0.0531 (16) | −0.0135 (17) | 0.0160 (14) | −0.0087 (16) |
C6 | 0.0368 (14) | 0.0436 (17) | 0.0625 (17) | −0.0125 (13) | 0.0072 (12) | 0.0034 (15) |
C7 | 0.0477 (16) | 0.051 (2) | 0.070 (2) | −0.0005 (15) | 0.0012 (15) | 0.0039 (17) |
C8 | 0.0575 (18) | 0.059 (2) | 0.0652 (19) | 0.0002 (17) | 0.0066 (15) | −0.0121 (18) |
C9 | 0.0442 (15) | 0.065 (2) | 0.0552 (17) | −0.0055 (17) | 0.0070 (13) | 0.0046 (17) |
C10 | 0.0536 (18) | 0.060 (2) | 0.077 (2) | 0.0071 (18) | −0.0029 (17) | 0.004 (2) |
C11 | 0.0509 (16) | 0.0486 (19) | 0.072 (2) | −0.0037 (16) | 0.0005 (15) | −0.0021 (17) |
C12 | 0.127 (4) | 0.110 (4) | 0.070 (3) | 0.007 (4) | −0.014 (3) | −0.028 (3) |
C13 | 0.0362 (13) | 0.0360 (15) | 0.0506 (15) | −0.0067 (12) | 0.0046 (11) | −0.0015 (13) |
C14 | 0.0367 (13) | 0.0397 (15) | 0.0445 (14) | −0.0087 (12) | 0.0159 (11) | −0.0044 (13) |
C15 | 0.0331 (12) | 0.0370 (15) | 0.0466 (14) | −0.0065 (11) | 0.0099 (10) | −0.0013 (12) |
C16 | 0.0427 (15) | 0.070 (2) | 0.0573 (17) | −0.0166 (16) | 0.0125 (13) | −0.0001 (18) |
C17 | 0.0599 (18) | 0.066 (2) | 0.0576 (18) | −0.0162 (18) | 0.0227 (15) | 0.0081 (17) |
C18 | 0.0626 (18) | 0.064 (2) | 0.0447 (15) | −0.0054 (17) | 0.0128 (13) | 0.0004 (16) |
C19 | 0.0435 (14) | 0.0507 (18) | 0.0480 (15) | −0.0111 (14) | 0.0032 (12) | −0.0050 (15) |
C20 | 0.101 (3) | 0.106 (4) | 0.062 (2) | −0.016 (3) | 0.002 (2) | 0.021 (3) |
C21 | 0.0383 (13) | 0.0396 (16) | 0.0470 (15) | −0.0021 (12) | 0.0050 (12) | −0.0028 (13) |
C22 | 0.0511 (17) | 0.0450 (18) | 0.0636 (18) | 0.0069 (14) | 0.0104 (15) | 0.0012 (16) |
C23 | 0.0448 (15) | 0.060 (2) | 0.0637 (18) | −0.0143 (15) | −0.0027 (13) | 0.0000 (17) |
C24 | 0.0393 (14) | 0.0444 (16) | 0.0406 (14) | −0.0068 (13) | −0.0005 (11) | −0.0010 (13) |
C25 | 0.0631 (18) | 0.0438 (17) | 0.0472 (15) | −0.0021 (15) | 0.0103 (14) | 0.0015 (14) |
C26 | 0.0671 (19) | 0.0546 (19) | 0.0504 (16) | 0.0024 (17) | 0.0063 (15) | −0.0097 (16) |
C27 | 0.0545 (16) | 0.078 (2) | 0.0349 (14) | −0.0034 (18) | 0.0029 (12) | −0.0059 (16) |
C28 | 0.0618 (19) | 0.075 (3) | 0.0455 (16) | −0.0021 (19) | 0.0035 (15) | 0.0150 (18) |
C29 | 0.0536 (16) | 0.054 (2) | 0.0516 (16) | 0.0037 (16) | 0.0034 (13) | 0.0093 (16) |
N1—C13 | 1.350 (3) | C15—C16 | 1.543 (4) |
N1—C5 | 1.463 (4) | C15—C21 | 1.569 (4) |
N1—C2 | 1.474 (4) | C15—H15 | 0.9800 |
N2—O4 | 1.201 (5) | C16—C17 | 1.513 (4) |
N2—O5 | 1.207 (5) | C16—H16A | 0.9700 |
N2—C27 | 1.473 (4) | C16—H16B | 0.9700 |
O1—C13 | 1.352 (3) | C17—C18 | 1.517 (5) |
O1—C14 | 1.463 (3) | C17—H17A | 0.9700 |
O2—C13 | 1.202 (3) | C17—H17B | 0.9700 |
O3—C9 | 1.381 (4) | C18—C20 | 1.520 (5) |
O3—C12 | 1.417 (6) | C18—C19 | 1.529 (4) |
C2—C3 | 1.498 (5) | C18—H18 | 0.9800 |
C2—C6 | 1.508 (4) | C19—H19A | 0.9700 |
C2—H2 | 0.9800 | C19—H19B | 0.9700 |
C3—C4 | 1.306 (6) | C20—H20A | 0.9600 |
C3—H3 | 0.9300 | C20—H20B | 0.9600 |
C4—C5 | 1.494 (4) | C20—H20C | 0.9600 |
C4—H4 | 0.9300 | C21—C22 | 1.539 (4) |
C5—H5A | 0.9700 | C21—C24 | 1.540 (4) |
C5—H5B | 0.9700 | C21—C23 | 1.550 (4) |
C6—C7 | 1.365 (5) | C22—H22A | 0.9600 |
C6—C11 | 1.405 (4) | C22—H22B | 0.9600 |
C7—C8 | 1.389 (4) | C22—H22C | 0.9600 |
C7—H7 | 0.9300 | C23—H23A | 0.9600 |
C8—C9 | 1.359 (5) | C23—H23B | 0.9600 |
C8—H8 | 0.9300 | C23—H23C | 0.9600 |
C9—C10 | 1.398 (5) | C24—C29 | 1.390 (4) |
C10—C11 | 1.361 (5) | C24—C25 | 1.393 (4) |
C10—H10 | 0.9300 | C25—C26 | 1.386 (4) |
C11—H11 | 0.9300 | C25—H25 | 0.9300 |
C12—H12A | 0.9600 | C26—C27 | 1.371 (5) |
C12—H12B | 0.9600 | C26—H26 | 0.9300 |
C12—H12C | 0.9600 | C27—C28 | 1.365 (6) |
C14—C19 | 1.505 (4) | C28—C29 | 1.386 (4) |
C14—C15 | 1.525 (4) | C28—H28 | 0.9300 |
C14—H14 | 0.9800 | C29—H29 | 0.9300 |
C13—N1—C5 | 126.5 (2) | C17—C16—H16A | 109.4 |
C13—N1—C2 | 120.4 (2) | C15—C16—H16A | 109.4 |
C5—N1—C2 | 113.0 (2) | C17—C16—H16B | 109.4 |
O4—N2—O5 | 122.6 (4) | C15—C16—H16B | 109.4 |
O4—N2—C27 | 118.8 (4) | H16A—C16—H16B | 108.0 |
O5—N2—C27 | 118.5 (4) | C16—C17—C18 | 113.0 (3) |
C13—O1—C14 | 114.9 (2) | C16—C17—H17A | 109.0 |
C9—O3—C12 | 117.4 (3) | C18—C17—H17A | 109.0 |
N1—C2—C3 | 100.5 (3) | C16—C17—H17B | 109.0 |
N1—C2—C6 | 112.6 (2) | C18—C17—H17B | 109.0 |
C3—C2—C6 | 115.2 (2) | H17A—C17—H17B | 107.8 |
N1—C2—H2 | 109.4 | C17—C18—C20 | 112.4 (3) |
C3—C2—H2 | 109.4 | C17—C18—C19 | 108.2 (2) |
C6—C2—H2 | 109.4 | C20—C18—C19 | 111.2 (3) |
C4—C3—C2 | 112.8 (3) | C17—C18—H18 | 108.3 |
C4—C3—H3 | 123.6 | C20—C18—H18 | 108.3 |
C2—C3—H3 | 123.6 | C19—C18—H18 | 108.3 |
C3—C4—C5 | 112.1 (3) | C14—C19—C18 | 111.9 (2) |
C3—C4—H4 | 123.9 | C14—C19—H19A | 109.2 |
C5—C4—H4 | 123.9 | C18—C19—H19A | 109.2 |
N1—C5—C4 | 101.3 (3) | C14—C19—H19B | 109.2 |
N1—C5—H5A | 111.5 | C18—C19—H19B | 109.2 |
C4—C5—H5A | 111.5 | H19A—C19—H19B | 107.9 |
N1—C5—H5B | 111.5 | C18—C20—H20A | 109.5 |
C4—C5—H5B | 111.5 | C18—C20—H20B | 109.5 |
H5A—C5—H5B | 109.3 | H20A—C20—H20B | 109.5 |
C7—C6—C11 | 117.1 (3) | C18—C20—H20C | 109.5 |
C7—C6—C2 | 122.2 (3) | H20A—C20—H20C | 109.5 |
C11—C6—C2 | 120.7 (3) | H20B—C20—H20C | 109.5 |
C6—C7—C8 | 122.3 (3) | C22—C21—C24 | 111.7 (2) |
C6—C7—H7 | 118.8 | C22—C21—C23 | 107.4 (3) |
C8—C7—H7 | 118.8 | C24—C21—C23 | 105.4 (2) |
C9—C8—C7 | 119.8 (3) | C22—C21—C15 | 110.9 (3) |
C9—C8—H8 | 120.1 | C24—C21—C15 | 110.7 (2) |
C7—C8—H8 | 120.1 | C23—C21—C15 | 110.6 (2) |
C8—C9—O3 | 125.0 (3) | C21—C22—H22A | 109.5 |
C8—C9—C10 | 119.4 (3) | C21—C22—H22B | 109.5 |
O3—C9—C10 | 115.6 (3) | H22A—C22—H22B | 109.5 |
C11—C10—C9 | 120.1 (3) | C21—C22—H22C | 109.5 |
C11—C10—H10 | 119.9 | H22A—C22—H22C | 109.5 |
C9—C10—H10 | 119.9 | H22B—C22—H22C | 109.5 |
C10—C11—C6 | 121.3 (3) | C21—C23—H23A | 109.5 |
C10—C11—H11 | 119.3 | C21—C23—H23B | 109.5 |
C6—C11—H11 | 119.3 | H23A—C23—H23B | 109.5 |
O3—C12—H12A | 109.5 | C21—C23—H23C | 109.5 |
O3—C12—H12B | 109.5 | H23A—C23—H23C | 109.5 |
H12A—C12—H12B | 109.5 | H23B—C23—H23C | 109.5 |
O3—C12—H12C | 109.5 | C29—C24—C25 | 117.2 (2) |
H12A—C12—H12C | 109.5 | C29—C24—C21 | 122.4 (3) |
H12B—C12—H12C | 109.5 | C25—C24—C21 | 120.3 (3) |
O2—C13—N1 | 124.1 (3) | C26—C25—C24 | 121.8 (3) |
O2—C13—O1 | 124.8 (2) | C26—C25—H25 | 119.1 |
N1—C13—O1 | 111.1 (2) | C24—C25—H25 | 119.1 |
O1—C14—C19 | 108.5 (2) | C27—C26—C25 | 118.6 (3) |
O1—C14—C15 | 108.43 (19) | C27—C26—H26 | 120.7 |
C19—C14—C15 | 112.3 (2) | C25—C26—H26 | 120.7 |
O1—C14—H14 | 109.2 | C28—C27—C26 | 121.8 (3) |
C19—C14—H14 | 109.2 | C28—C27—N2 | 119.7 (3) |
C15—C14—H14 | 109.2 | C26—C27—N2 | 118.5 (4) |
C14—C15—C16 | 107.0 (2) | C27—C28—C29 | 118.9 (3) |
C14—C15—C21 | 113.9 (2) | C27—C28—H28 | 120.5 |
C16—C15—C21 | 113.9 (2) | C29—C28—H28 | 120.5 |
C14—C15—H15 | 107.2 | C28—C29—C24 | 121.7 (3) |
C16—C15—H15 | 107.2 | C28—C29—H29 | 119.2 |
C21—C15—H15 | 107.2 | C24—C29—H29 | 119.2 |
C17—C16—C15 | 111.3 (2) | ||
C13—N1—C2—C3 | −170.1 (3) | C19—C14—C15—C21 | −175.3 (2) |
C5—N1—C2—C3 | 6.0 (3) | C14—C15—C16—C17 | −56.9 (4) |
C13—N1—C2—C6 | 66.8 (3) | C21—C15—C16—C17 | 176.4 (3) |
C5—N1—C2—C6 | −117.1 (3) | C15—C16—C17—C18 | 58.3 (4) |
N1—C2—C3—C4 | −3.6 (4) | C16—C17—C18—C20 | −178.3 (3) |
C6—C2—C3—C4 | 117.7 (4) | C16—C17—C18—C19 | −55.1 (4) |
C2—C3—C4—C5 | 0.0 (5) | O1—C14—C19—C18 | −179.1 (2) |
C13—N1—C5—C4 | 169.8 (3) | C15—C14—C19—C18 | −59.3 (3) |
C2—N1—C5—C4 | −6.0 (3) | C17—C18—C19—C14 | 55.0 (4) |
C3—C4—C5—N1 | 3.6 (4) | C20—C18—C19—C14 | 179.0 (3) |
N1—C2—C6—C7 | −123.2 (3) | C14—C15—C21—C22 | −46.9 (3) |
C3—C2—C6—C7 | 122.4 (3) | C16—C15—C21—C22 | 76.2 (3) |
N1—C2—C6—C11 | 54.4 (4) | C14—C15—C21—C24 | 77.7 (3) |
C3—C2—C6—C11 | −60.1 (4) | C16—C15—C21—C24 | −159.3 (3) |
C11—C6—C7—C8 | −1.3 (4) | C14—C15—C21—C23 | −165.9 (2) |
C2—C6—C7—C8 | 176.4 (3) | C16—C15—C21—C23 | −42.8 (3) |
C6—C7—C8—C9 | −0.1 (5) | C22—C21—C24—C29 | −14.5 (4) |
C7—C8—C9—O3 | −178.1 (3) | C23—C21—C24—C29 | 101.8 (3) |
C7—C8—C9—C10 | 1.2 (5) | C15—C21—C24—C29 | −138.6 (3) |
C12—O3—C9—C8 | −2.7 (5) | C22—C21—C24—C25 | 170.2 (3) |
C12—O3—C9—C10 | 178.0 (4) | C23—C21—C24—C25 | −73.5 (3) |
C8—C9—C10—C11 | −0.9 (5) | C15—C21—C24—C25 | 46.1 (3) |
O3—C9—C10—C11 | 178.4 (3) | C29—C24—C25—C26 | 1.3 (4) |
C9—C10—C11—C6 | −0.4 (5) | C21—C24—C25—C26 | 176.9 (3) |
C7—C6—C11—C10 | 1.5 (4) | C24—C25—C26—C27 | −0.9 (5) |
C2—C6—C11—C10 | −176.2 (3) | C25—C26—C27—C28 | −0.3 (5) |
C5—N1—C13—O2 | −173.7 (3) | C25—C26—C27—N2 | 179.8 (3) |
C2—N1—C13—O2 | 1.8 (4) | O4—N2—C27—C28 | −175.6 (4) |
C5—N1—C13—O1 | 5.8 (4) | O5—N2—C27—C28 | 1.2 (5) |
C2—N1—C13—O1 | −178.7 (2) | O4—N2—C27—C26 | 4.2 (5) |
C14—O1—C13—O2 | −8.9 (4) | O5—N2—C27—C26 | −179.0 (4) |
C14—O1—C13—N1 | 171.6 (2) | C26—C27—C28—C29 | 1.1 (5) |
C13—O1—C14—C19 | −88.2 (3) | N2—C27—C28—C29 | −179.0 (3) |
C13—O1—C14—C15 | 149.6 (2) | C27—C28—C29—C24 | −0.7 (5) |
O1—C14—C15—C16 | 177.8 (2) | C25—C24—C29—C28 | −0.5 (4) |
C19—C14—C15—C16 | 58.0 (3) | C21—C24—C29—C28 | −175.9 (3) |
O1—C14—C15—C21 | −55.4 (3) |
Cg1 is the ring centroid of the C24–C29 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5A···Cg1 | 0.97 | 2.67 | 3.612 (3) | 163 |
C19—H19B···O2i | 0.97 | 2.60 | 3.472 (4) | 150 |
Symmetry code: (i) x, y−1, z. |
Contact | Distance | Symmetry operation |
H2···H5B | 2.31 | x, 1 + y, z |
H7···H5B | 2.28 | x, 1 + y, z |
H22A···H25 | 2.31 | x, 1 + y, z |
O3···H17B | 2.52 | 1 + x, 1 + y, z |
O3···H20B | 2.56 | 2 - x, - 1/2 + y, 2 - z |
O4···H4 | 2.56 | 2 - x, - 1/2 + y, 1 - z |
O5···H22C | 2.60 | 1 - x, - 1/2 + y, 1 - z |
C9···H17B | 2.72 | 1 + x, 1 + y, z |
C9···H12C | 2.80 | 2 - x, - 1/2 + y, 2 - z |
C23···H3 | 2.84 | -1 + x, -1 + y, z |
Contact | Percentage contribution |
H···H | 61.7 |
O···H/H···O | 23.9 |
C···H/H···C | 12.3 |
N···H/H···N | 1.1 |
O···O | 0.7 |
C···O/O···C | 0.2 |
C···C | 0.1 |
Acknowledgements
The Brazilian agencies Coordination for the Improvement of Higher Education Personnel, CAPES and National Council for Scientific and Technological Development, CNPq, for a scholarship to JZ-S (305626/2013–2) are acknowledged for support.
Funding information: Funding for this research was provided by: Conselho Nacional de Desenvolvimento Científico e Tecnológico (award No. 305626/2013–2).
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