research communications
7,12]docosane tetrachloride tetrahydrate from synchrotron X-ray data
of 3,14-dimethyl-2,6,13,17-tetraazoniatricyclo[16.4.0.0aPohang Accelerator Laboratory, POSTECH, Pohang 37673, Republic of Korea, and bDepartment of Chemistry, Andong National University, Andong 36729, Republic of Korea
*Correspondence e-mail: jhchoi@anu.ac.kr
The 20H44N44+·4Cl−·4H2O, has been determined using synchrotron radiation at 220 K. The reveals that protonation has occurred at all four amine N atoms. The contains one half-cation (completed by crystallographic inversion symmetry), two chloride anions and two water molecules. There are two molecules in the The Cl− anions and hydrate molecules are involved in hydrogen bonding. The is stabilized by intermolecular hydrogen bonds involving the macrocycle N—H groups and water O—H groups as donors and the O atoms of the water molecules and the Cl− anions as acceptors, giving rise to a three-dimensional network.
of the title salt, CKeywords: crystal structure; protonated macrocycle; tetrachloride; tetrahydrate; hydrogen bonding; synchrotron radiation.
CCDC reference: 1852146
1. Chemical context
The macrocycle 3,14-dimethyl-2,6,13,17-tetraazatricyclo(16.4.0.07,12)docosane (C20H40N4, L) is a strongly basic amine capable of forming the [C20H42N4]2+ dication or the [C20H44N4]4+ tetracation in which all of the N—H bonds are generally available for hydrogen-bond formation. These di- or tetraammonium cations may be suitable for the removal of toxic heavy metal ions from water. The macrocycle L contains a cyclam backbone with two cyclohexane subunits. Methyl groups are attached to the 3 and 14 carbon atoms of the propyl chains that bridge opposite pairs of N atoms in the structure. Previously, we have reported the crystal structures of [Cu(L)](NO3)2·3H2O, [Cu(L)](NO3)2, [Cu(L)](ClO4)2 and [Cu(L)(H2O)2](BF4)2·2H2O together with [Zn(L)(OCOCH3)2]. In these structures, the copper(II) or zinc(II) cations have tetragonally distorted octahedral environments with the four N atoms of the macrocyclic ligand in equatorial positions and O atoms of counter-anions, water molecules or acetato ligands in axial positions (Choi et al., 2006, 2007, 2012a,b; Ross et al., 2012). In these CuII and ZnII complexes, the macrocyclic ligands adopt their most stable trans-III configurations. The crystal structures of the di-cations C20H40N4·2C11H10O (Choi et al., 2012c) and [C20H42N4](SO4)·2MeOH (White et al., 2015) have also been reported. As part of our research program in this area, we report here the preparation of the new tetra-cationic compound, [C20H44N4]Cl4·4H2O, (I), as the hydrated chloride salt and its structural characterization by synchrotron single-crystal X-ray diffraction.
2. Structural commentary
The title compound contains a positively charged macrocyclic cation, 4Cl− anions and four solvent water molecules and was characterized during studies of the macrocyclic ligand and its copper(II) complexes. An ellipsoid plot of the molecular components in (I) with the atom-numbering scheme is shown in Fig. 1. The consists of one half of the macrocycle, which lies about a center of inversion, two chloride anions and two solvent water molecules. The four N atoms are coplanar, and the two methyl substituents are anti with respect to the macrocyclic plane as a result of the molecular inversion symmetry. The six-membered cyclohexane ring is in a stable chair conformation. Within the centrosymmetric tetra-protonated amine unit [C20H44N4]4+, the C—C and N—C bond lengths vary from 1.522 (2) to 1.542 (2) Å and from 1.506 (2) to 1.522 (2) Å, respectively. The ranges of N—C—C and C—N—C angles are 106.85 (10) to 114.32 (11)° and 116.70 (10) to 118.89 (10)°, respectively. The bond lengths and angles within the [C20H44N4]4+ tetra-cation are comparable to those found in the free ligand or the di-cation in C20H40N4·2C11H10O (Choi et al., 2012c), [C20H42N4](SO4)·2MeOH (White et al., 2015) and [C20H42N4][Fe{HB(pz)3}(CN)3]2·2H2O·2MeOH (Kim et al., 2004).
3. Supramolecular features
Extensive O—H⋯Cl, N—H⋯Cl and N—H⋯O hydrogen-bonding interactions occur in the ). All of the Cl− anions and the O atoms of the water molecules serve as hydrogen-bond acceptors. O—H⋯Cl hydrogen bonds link the water molecules to the neighboring Cl− anions, while N—H⋯Cl and N—H⋯O hydrogen bonds interconnect the [C20H44N4]4+ cations with both anions and water molecules (Figs. 1 and 2). The hydrogen atoms on N1 and N2 both form bifurcated hydrogen bonds with O and Cl atoms. The extensive array of these contacts generates a three-dimensional network structure (Fig. 2), and these hydrogen-bonding interactions help to stabilize the crystal structure.
(Table 14. Database survey
A search of the Cambridge Structural Database (Version 5.38, May 2017 with three updates; Groom et al., 2016) gave just three hits for compounds containing the macrocycles [C20H44N4]4+, [C20H42N4]2+ or (C20H40N4). The crystal structures of C20H40N4·2C11H10O (Choi et al., 2012c), [C20H42N4](SO4)·2MeOH (White et al., 2015) and [C20H42N4][Fe{HB(pz)3}(CN)3]2·2H2O·2MeOH (Kim et al., 2004) were reported previously. However, to our knowledge no of any compound with [C20H44N4]4+ has been reported.
5. Synthesis and crystallization
Commercially available trans-1,2-cyclohexanediamine and methyl vinyl ketone (Sigma–Aldrich) were used as provided. All chemicals were reagent grade and used without further purification. As a starting material, the macrocycle 3,14-dimethyl-2,6,13,17-tetraazatricyclo(16.4.0.07,12)docosane was prepared according to a published procedure (Kang et al., 1991). A solution of the macrocyclic ligand (0.084 g, 0.25 mmol) in water (10 mL) was added dropwise to a stirred solution of CuCl2·2H2O (0.085 g, 0.5 mmol) in water (15 mL). The solution was heated for 1 h at 338 K. After cooling to 298 K, the pH was adjusted to 3.0 with 1.0 M HCl. The solution was filtered and left at room temperature. Colourless crystals suitable for X-ray analysis were obtained unexpectedly from the solution over a period of a few days.
6. Refinement
Crystal data, data collection and structure . All C and N-bound H atoms in the complex were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C—H distances of 0.97–0.99 Å, an N—H distance of 0.9 Å and with Uiso(H) values of 1.2Ueq(C, N) and 1.5Ueq(C-methyl). O-bound H atoms of the water molecules were located in a difference-Fourier map, and the O—H distances and the H—O—H angles were restrained using DFIX and DANG constraints (0.84 and 1.36 Å).
details are summarized in Table 2
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Supporting information
CCDC reference: 1852146
https://doi.org/10.1107/S2056989018009337/sj5559sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989018009337/sj5559Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989018009337/sj5559Isup3.cml
Data collection: PAL BL2D-SMDC (Shin et al., 2016); cell
HKL3000sm (Otwinowski & Minor, 1997); data reduction: HKL3000sm (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXT2015 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2015 (Sheldrick, 2015b); molecular graphics: DIAMOND (Putz & Brandenburg, 2014); software used to prepare material for publication: publCIF (Westrip, 2010).C20H44N44+·4Cl−·4H2O | F(000) = 600 |
Mr = 554.45 | Dx = 1.297 Mg m−3 |
Monoclinic, P21/n | Synchrotron radiation, λ = 0.630 Å |
a = 7.5450 (15) Å | Cell parameters from 44298 reflections |
b = 23.190 (5) Å | θ = 0.4–33.6° |
c = 8.3370 (17) Å | µ = 0.32 mm−1 |
β = 103.32 (3)° | T = 220 K |
V = 1419.5 (5) Å3 | Block, colourless |
Z = 2 | 0.08 × 0.06 × 0.06 mm |
Rayonix MX225HS CCD area detector diffractometer | 3504 reflections with I > 2σ(I) |
Radiation source: PLSII 2D bending magnet | Rint = 0.061 |
ω scans | θmax = 25.5°, θmin = 1.6° |
Absorption correction: empirical (using intensity measurements) (HKL3000sm SCALEPACK; Otwinowski & Minor, 1997) | h = −10→10 |
Tmin = 0.919, Tmax = 1.000 | k = −31→31 |
13816 measured reflections | l = −11→11 |
3797 independent reflections |
Refinement on F2 | 6 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.141 | w = 1/[σ2(Fo2) + (0.0863P)2 + 0.2986P] where P = (Fo2 + 2Fc2)/3 |
S = 1.14 | (Δ/σ)max = 0.001 |
3797 reflections | Δρmax = 0.80 e Å−3 |
158 parameters | Δρmin = −0.33 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.28649 (4) | 0.48361 (2) | −0.23231 (4) | 0.02152 (13) | |
Cl2 | 0.23041 (5) | 0.70611 (2) | −0.24081 (5) | 0.02724 (13) | |
O1 | 0.17644 (18) | 0.59115 (5) | −0.06048 (14) | 0.0292 (3) | |
H1O1 | 0.211 (3) | 0.5659 (7) | −0.118 (2) | 0.044* | |
H2O1 | 0.190 (3) | 0.6234 (5) | −0.101 (3) | 0.044* | |
O2 | 0.81871 (15) | 0.70598 (5) | 0.55335 (16) | 0.0285 (3) | |
H1O2 | 0.807 (3) | 0.7293 (8) | 0.476 (2) | 0.043* | |
H2O2 | 0.9243 (18) | 0.7082 (9) | 0.612 (2) | 0.043* | |
N1 | 0.31217 (15) | 0.54018 (5) | 0.24038 (13) | 0.0135 (2) | |
H1AN | 0.424887 | 0.529030 | 0.234909 | 0.016* | |
H1B | 0.273908 | 0.566098 | 0.159468 | 0.016* | |
N2 | 0.52610 (14) | 0.64198 (5) | 0.58563 (14) | 0.0145 (2) | |
H2AN | 0.431936 | 0.660340 | 0.612559 | 0.017* | |
H2B | 0.612982 | 0.668566 | 0.585565 | 0.017* | |
C1 | 0.24830 (16) | 0.43768 (5) | 0.32273 (16) | 0.0151 (2) | |
H1A | 0.142456 | 0.413129 | 0.322216 | 0.018* | |
H1AB | 0.292168 | 0.452568 | 0.434890 | 0.018* | |
C2 | 0.18858 (17) | 0.48834 (5) | 0.20562 (17) | 0.0151 (3) | |
H2A | 0.182324 | 0.475365 | 0.092579 | 0.018* | |
H2AB | 0.065641 | 0.500024 | 0.212226 | 0.018* | |
C3 | 0.32531 (16) | 0.57005 (5) | 0.40305 (15) | 0.0139 (2) | |
H3 | 0.374735 | 0.542524 | 0.493008 | 0.017* | |
C4 | 0.13998 (17) | 0.59125 (6) | 0.42271 (17) | 0.0190 (3) | |
H4A | 0.055377 | 0.558611 | 0.409763 | 0.023* | |
H4AB | 0.152601 | 0.606815 | 0.534063 | 0.023* | |
C5 | 0.06125 (19) | 0.63767 (7) | 0.29694 (19) | 0.0240 (3) | |
H5A | −0.055674 | 0.650884 | 0.315737 | 0.029* | |
H5AB | 0.039283 | 0.621385 | 0.185629 | 0.029* | |
C6 | 0.1913 (2) | 0.68874 (7) | 0.31020 (19) | 0.0257 (3) | |
H6A | 0.199462 | 0.708191 | 0.416010 | 0.031* | |
H6AB | 0.142341 | 0.716389 | 0.222244 | 0.031* | |
C7 | 0.38260 (19) | 0.67021 (6) | 0.29703 (18) | 0.0205 (3) | |
H7A | 0.378106 | 0.658961 | 0.182857 | 0.025* | |
H7AB | 0.464730 | 0.703370 | 0.323138 | 0.025* | |
C8 | 0.46174 (16) | 0.62004 (5) | 0.41108 (15) | 0.0141 (2) | |
H8 | 0.569077 | 0.605031 | 0.374969 | 0.017* | |
C9 | 0.60141 (16) | 0.59907 (5) | 0.72246 (16) | 0.0144 (2) | |
H9 | 0.501674 | 0.573469 | 0.737922 | 0.017* | |
C10 | 0.6708 (2) | 0.63373 (6) | 0.87937 (17) | 0.0233 (3) | |
H10A | 0.706638 | 0.607639 | 0.972125 | 0.035* | |
H10B | 0.574944 | 0.659033 | 0.897628 | 0.035* | |
H10C | 0.774932 | 0.656615 | 0.868372 | 0.035* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.01190 (19) | 0.0294 (2) | 0.0260 (2) | −0.00148 (11) | 0.01001 (14) | −0.00336 (13) |
Cl2 | 0.0223 (2) | 0.0314 (2) | 0.0275 (2) | 0.00606 (13) | 0.00466 (16) | −0.00617 (14) |
O1 | 0.0377 (6) | 0.0317 (6) | 0.0187 (5) | 0.0038 (5) | 0.0078 (5) | −0.0001 (4) |
O2 | 0.0175 (5) | 0.0358 (6) | 0.0316 (6) | −0.0066 (4) | 0.0043 (5) | 0.0089 (5) |
N1 | 0.0089 (4) | 0.0188 (5) | 0.0133 (5) | 0.0003 (4) | 0.0036 (4) | −0.0002 (4) |
N2 | 0.0105 (5) | 0.0176 (5) | 0.0151 (5) | −0.0007 (4) | 0.0024 (4) | −0.0005 (4) |
C1 | 0.0102 (5) | 0.0195 (5) | 0.0163 (6) | 0.0012 (4) | 0.0045 (4) | 0.0007 (5) |
C2 | 0.0093 (5) | 0.0183 (5) | 0.0162 (6) | −0.0006 (4) | −0.0001 (4) | −0.0021 (5) |
C3 | 0.0106 (5) | 0.0192 (5) | 0.0124 (5) | −0.0028 (4) | 0.0036 (4) | −0.0016 (4) |
C4 | 0.0121 (6) | 0.0275 (6) | 0.0198 (6) | −0.0038 (5) | 0.0083 (5) | −0.0062 (5) |
C5 | 0.0130 (6) | 0.0349 (7) | 0.0236 (7) | 0.0061 (5) | 0.0035 (5) | −0.0039 (6) |
C6 | 0.0254 (7) | 0.0249 (6) | 0.0250 (7) | 0.0071 (6) | 0.0024 (6) | 0.0034 (6) |
C7 | 0.0188 (6) | 0.0223 (6) | 0.0189 (6) | −0.0018 (5) | 0.0012 (5) | 0.0054 (5) |
C8 | 0.0104 (5) | 0.0192 (5) | 0.0127 (5) | −0.0026 (4) | 0.0024 (4) | −0.0004 (5) |
C9 | 0.0106 (5) | 0.0190 (5) | 0.0137 (6) | 0.0008 (4) | 0.0028 (4) | 0.0009 (4) |
C10 | 0.0242 (7) | 0.0278 (7) | 0.0159 (6) | 0.0051 (6) | 0.0004 (5) | −0.0054 (5) |
O1—H1O1 | 0.837 (9) | C3—H3 | 0.9900 |
O1—H2O1 | 0.837 (9) | C4—C5 | 1.524 (2) |
O2—H1O2 | 0.833 (9) | C4—H4A | 0.9800 |
O2—H2O2 | 0.834 (9) | C4—H4AB | 0.9800 |
N1—C3 | 1.5056 (16) | C5—C6 | 1.526 (2) |
N1—C2 | 1.5080 (16) | C5—H5A | 0.9800 |
N1—H1AN | 0.9000 | C5—H5AB | 0.9800 |
N1—H1B | 0.9000 | C6—C7 | 1.534 (2) |
N2—C8 | 1.5122 (17) | C6—H6A | 0.9800 |
N2—C9 | 1.5217 (16) | C6—H6AB | 0.9800 |
N2—H2AN | 0.9000 | C7—C8 | 1.5338 (18) |
N2—H2B | 0.9000 | C7—H7A | 0.9800 |
C1—C2 | 1.5277 (18) | C7—H7AB | 0.9800 |
C1—C9i | 1.5333 (17) | C8—H8 | 0.9900 |
C1—H1A | 0.9800 | C9—C10 | 1.5217 (19) |
C1—H1AB | 0.9800 | C9—H9 | 0.9900 |
C2—H2A | 0.9800 | C10—H10A | 0.9700 |
C2—H2AB | 0.9800 | C10—H10B | 0.9700 |
C3—C4 | 1.5263 (17) | C10—H10C | 0.9700 |
C3—C8 | 1.5416 (17) | ||
H1O1—O1—H2O1 | 108.0 (17) | H4A—C4—H4AB | 107.9 |
H1O2—O2—H2O2 | 108.9 (18) | C4—C5—C6 | 110.86 (12) |
C3—N1—C2 | 116.70 (10) | C4—C5—H5A | 109.5 |
C3—N1—H1AN | 108.1 | C6—C5—H5A | 109.5 |
C2—N1—H1AN | 108.1 | C4—C5—H5AB | 109.5 |
C3—N1—H1B | 108.1 | C6—C5—H5AB | 109.5 |
C2—N1—H1B | 108.1 | H5A—C5—H5AB | 108.1 |
H1AN—N1—H1B | 107.3 | C5—C6—C7 | 112.18 (12) |
C8—N2—C9 | 118.89 (10) | C5—C6—H6A | 109.2 |
C8—N2—H2AN | 107.6 | C7—C6—H6A | 109.2 |
C9—N2—H2AN | 107.6 | C5—C6—H6AB | 109.2 |
C8—N2—H2B | 107.6 | C7—C6—H6AB | 109.2 |
C9—N2—H2B | 107.6 | H6A—C6—H6AB | 107.9 |
H2AN—N2—H2B | 107.0 | C8—C7—C6 | 113.98 (11) |
C2—C1—C9i | 113.35 (10) | C8—C7—H7A | 108.8 |
C2—C1—H1A | 108.9 | C6—C7—H7A | 108.8 |
C9i—C1—H1A | 108.9 | C8—C7—H7AB | 108.8 |
C2—C1—H1AB | 108.9 | C6—C7—H7AB | 108.8 |
C9i—C1—H1AB | 108.9 | H7A—C7—H7AB | 107.7 |
H1A—C1—H1AB | 107.7 | N2—C8—C7 | 109.53 (10) |
N1—C2—C1 | 114.32 (11) | N2—C8—C3 | 110.97 (10) |
N1—C2—H2A | 108.7 | C7—C8—C3 | 112.51 (11) |
C1—C2—H2A | 108.7 | N2—C8—H8 | 107.9 |
N1—C2—H2AB | 108.7 | C7—C8—H8 | 107.9 |
C1—C2—H2AB | 108.7 | C3—C8—H8 | 107.9 |
H2A—C2—H2AB | 107.6 | C10—C9—N2 | 107.10 (11) |
N1—C3—C4 | 111.91 (10) | C10—C9—C1i | 112.18 (11) |
N1—C3—C8 | 106.85 (10) | N2—C9—C1i | 110.41 (10) |
C4—C3—C8 | 111.85 (11) | C10—C9—H9 | 109.0 |
N1—C3—H3 | 108.7 | N2—C9—H9 | 109.0 |
C4—C3—H3 | 108.7 | C1i—C9—H9 | 109.0 |
C8—C3—H3 | 108.7 | C9—C10—H10A | 109.5 |
C5—C4—C3 | 112.03 (11) | C9—C10—H10B | 109.5 |
C5—C4—H4A | 109.2 | H10A—C10—H10B | 109.5 |
C3—C4—H4A | 109.2 | C9—C10—H10C | 109.5 |
C5—C4—H4AB | 109.2 | H10A—C10—H10C | 109.5 |
C3—C4—H4AB | 109.2 | H10B—C10—H10C | 109.5 |
C3—N1—C2—C1 | −64.11 (14) | C9—N2—C8—C3 | 52.13 (14) |
C9i—C1—C2—N1 | −80.89 (14) | C6—C7—C8—N2 | −76.56 (14) |
C2—N1—C3—C4 | −58.63 (14) | C6—C7—C8—C3 | 47.36 (16) |
C2—N1—C3—C8 | 178.63 (10) | N1—C3—C8—N2 | −163.70 (10) |
N1—C3—C4—C5 | −64.60 (14) | C4—C3—C8—N2 | 73.52 (13) |
C8—C3—C4—C5 | 55.26 (15) | N1—C3—C8—C7 | 73.18 (13) |
C3—C4—C5—C6 | −57.49 (15) | C4—C3—C8—C7 | −49.60 (15) |
C4—C5—C6—C7 | 54.14 (16) | C8—N2—C9—C10 | 174.85 (11) |
C5—C6—C7—C8 | −49.87 (17) | C8—N2—C9—C1i | 52.43 (14) |
C9—N2—C8—C7 | 176.95 (10) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···Cl1 | 0.84 (1) | 2.26 (1) | 3.0837 (13) | 167 (2) |
O1—H2O1···Cl2 | 0.84 (1) | 2.30 (1) | 3.1329 (13) | 173 (2) |
O2—H1O2···Cl2ii | 0.83 (1) | 2.32 (1) | 3.1403 (14) | 172 (2) |
O2—H2O2···Cl2iii | 0.83 (1) | 2.35 (1) | 3.1839 (16) | 174 (2) |
N1—H1AN···Cl1iv | 0.90 | 2.20 | 3.0939 (12) | 171 |
N1—H1B···O1 | 0.90 | 1.90 | 2.7484 (17) | 156 |
N2—H2AN···Cl2v | 0.90 | 2.41 | 3.2819 (13) | 164 |
N2—H2B···O2 | 0.90 | 1.85 | 2.7245 (16) | 163 |
Symmetry codes: (ii) x+1/2, −y+3/2, z+1/2; (iii) x+1, y, z+1; (iv) −x+1, −y+1, −z; (v) x, y, z+1. |
Funding information
This work was supported by a Research Grant from Andong National University. The X-ray crystallography experiment at the PLS-II BL2D-SMC beamline was supported in part by MSICT and POSTECH.
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