research communications
Z′ = 1
of a second monoclinic polymorph of 3-methoxybenzoic acid withaX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cDepartment of Chemistry, Shahjalal University of Science and Technology, Sylhet, 3114, Bangladesh
*Correspondence e-mail: arafath_sustche90@yahoo.com
A new polymorphic form of the title compound, C8H8O3, is described in the centrosymmetric monoclinic P21/c with Z′ = 1 as compared to the first polymorph, which crystallizes with two conformers (Z′ = 2) in the in the same In the crystal of the second polymorph, inversion dimers linked by O—H⋯O hydrogen bonds occur and these are linked into zigzag chains, propagating along the b-axis direction by C—H⋯O links. The also features a weak π–π interaction, with a centroid-to-centroid distance of 3.8018 (6) Å. The second polymorph of the title compound is less stable than the reported first polymorph, as indicated by its smaller calculated lattice energy.
Keywords: crystal structure; polymorph; hydrogen-bond; 3-methoxybenzoic acid.
CCDC reference: 1448794
1. Chemical context
Methoxybenzoic acid, also called anisic acid, consists of three isomers with molecular formula C8H8O3: the crystal structures of 2- and 4-methoxybenzoic acids with Z′ = 1 have been reported (Parvez, 1987; Etter et al., 1988; Bryan, 1967; Colapietro & Domenicano, 1978; Fausto et al., 1997; Hathwar et al., 2011) and has not been observed for these two isomers in the Cambridge Structural Database (CSD) (Version 5.39, last update August 2018; Groom et al., 2016) to date. In this article, we report a second polymorphic form (Iβ) of 3-methoxybenzoic acid with Z′ = 1 and compare its properties with those of the previously reported first polymorphic form (Iα). Polymorph Iα crystallizes in the monoclinic P21/n with a = 13.8034 (17) Å, b = 5.0275 (5) Å, c = 21.446 (3) Å and β = 99.320 (13)° (Raffo et al., 2014; refcode EFINEO). The of Iα consists of two molecules with different conformations (Z′ = 2), which are connected into a homodimer through strong O—H⋯O hydrogen bonds. As described below, these two conformers (A and B) differ in the orientation of the methoxy group and its relative position from the —OH group. DFT calculations suggest that the A conformer of Iα is more energetically stable than the B conformer (Pereira Silva et al., 2015).
2. Structural commentary
The β (Fig. 1) consists of a unique 3-methoxybenzoic acid molecule (Z′ = 1). The molecule is almost planar with a maximum deviation of 0.107 (1) Å at atom O1. The molecules of Iβ adopt a similar conformation (overlay r.m.s.d. = 0.052 Å) as compared to the conformer A of Iα (Raffo et al., 2014). The carboxyl group (O1/O2/C7/H1O2) of Iβ is close to coplanar with the attached phenyl ring (C1–C6) as indicated by the dihedral angle of 5.6 (7)°. The C8—O3—C3—C2 torsion angle of Iβ is −176.63 (7)° as compared to −176.75 (11) and −1.4 (2)° for conformers A and B, respectively, of Iα.
of I3. Supramolecular features
In the crystal of Iβ, two inversion-related molecules are joined into a homodimer with an R22(8) graph-set motif via strong pairwise O—H⋯O hydrogen bonds (Fig. 2, Table 1). The homodimers are linked by weak C—H⋯O hydrogen bonds between two methoxy groups into zigzag chains with R22(6) graph-set motifs, which propagate along the b-axis direction. The [010] chains are stacked along the a axis into corrugated sheets parallel to the ab plane via weak π–π interactions with a centroid-to-centroid distance of 3.8018 (6) Å (symmetry codes: x − 1, y, z and x + 1, y, z) and slippage of 1.676 Å.
4. Hirshfeld surface analysis
The Hirshfeld surfaces mapped with normalized contact distance dnorm and the two-dimensional fingerprint plots for Iβ were generated using CrystalExplorer17.5 (Turner et al., 2017). The large and small red spots on the Hirshfeld surface mapped with dnorm (Fig. 3) correspond to the O2—H1O2⋯O1 and C8—H8A⋯O3 hydrogen bonds, respectively. The H⋯O distances are 1.09 and 0.16 Å shorter than the sum of van der Waals radii of H and O atoms (2.72 Å). The H⋯H contact is the most populated contact and contributes 42.3% of the total intermolecular contacts, followed by H⋯O/O⋯H (32.9%), H⋯C/C⋯H (11.4%) and C⋯C (8.1%) contacts (Fig. 4). The tips of pseudo-mirrored sharp spikes at de + di ≃ 1.6 Å represent the shortest H⋯O/O⋯H contacts, corresponding to the O2—H1O2⋯O1 hydrogen-bond. The absence of significant C—H⋯π interaction in the of Iβ is indicated by the absence of characteristic `wings' in the fingerprint plot of H⋯C/C⋯H contacts. The C⋯C contacts include the weak π–π interaction, which appears as a unique `triangle' focused at de ≃ di ≃ 1.8 Å. The π–π interaction is illustrated as a unique pattern of red and blue `triangles' on the shape-index surface and a flat region on the curvedness surface of the phenyl ring (see supporting Figures S1 and S2).
5. Lattice energy calculation
The lattice energies of polymorphs Iα and Iβ were calculated using PIXEL software (Gavezzotti, 2003) at default settings. The calculated lattice energy of Iα (107.5 kJ mol−1) is larger than that of Iβ (98.5 kJ mol−1) and this comparison is in agreement with the report of Pereira Silva et al. (2015), in which Iα is more stable than Iβ under ambient conditions.
6. Database survey
For the structure of 2-methoxybenzoic acid (refcodes FUFBOX and FUFBOX01, respectively), see: Parvez (1987) and Etter et al. (1988). For the structure of 4-methoxybenzoic acid (refcodes ANISIC, ANISIC01, ANISIC02 and ANISIC04, respectively), see: Bryan (1967), Colapietro & Domenicano (1978), Fausto et al. (1997) and Hathwar et al. (2011). For the previous structure of 3-methoxybenzoic acid (refcodes EFINEO and EFINEO01, respectively), see: Raffo et al. (2014) and Pereira Silva et al. (2015).
7. Synthesis and crystallization
Single crystals of Iβ were obtained from an unsuccessful attempt of co-crystallization between 3-methoxybenzoic acid and hexamethylenetetramine. Colourless plate-like crystals were obtained from slow evaporation of a methanolic mixture of 3-methoxybenzoic acid and hexamethylenetetramine in equimolar ratio at room temperature.
8. Refinement
Crystal data, data collection and structure . The O-bound H atom was located from the difference-Fourier map and refined freely [O2—H1O2 = 1.01 (2) Å]. The remaining H atoms were positioned geometrically [C—H = 0.95 and 0.98 Å] and refined using a riding model with Uiso(H) = 1.2 or 1.5Ueq(C). A rotating group model (AFIX 137) was applied to the methyl group.
details are summarized in Table 2Supporting information
CCDC reference: 1448794
https://doi.org/10.1107/S2056989018016900/hb7789sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989018016900/hb7789Isup2.hkl
Hirshfeld shape-index and curvedness Figures. DOI: https://doi.org/10.1107/S2056989018016900/hb7789sup3.docx
Supporting information file. DOI: https://doi.org/10.1107/S2056989018016900/hb7789Isup4.cml
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).C8H8O3 | F(000) = 320 |
Mr = 152.14 | Dx = 1.423 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 3.8018 (4) Å | Cell parameters from 3889 reflections |
b = 15.6027 (16) Å | θ = 2.6–32.4° |
c = 11.9755 (12) Å | µ = 0.11 mm−1 |
β = 90.889 (2)° | T = 100 K |
V = 710.28 (13) Å3 | Plate, colourless |
Z = 4 | 0.56 × 0.22 × 0.12 mm |
Bruker SMART APEXII DUO CCD diffractometer | 2550 independent reflections |
Radiation source: fine-focus sealed tube | 2049 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
φ and ω scans | θmax = 32.6°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −5→5 |
Tmin = 0.881, Tmax = 0.987 | k = −21→23 |
9395 measured reflections | l = −18→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.113 | w = 1/[σ2(Fo2) + (0.0616P)2 + 0.1229P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
2550 reflections | Δρmax = 0.40 e Å−3 |
105 parameters | Δρmin = −0.27 e Å−3 |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.20200 (18) | 0.96657 (4) | 0.88546 (5) | 0.02247 (16) | |
O2 | −0.04494 (18) | 0.88699 (4) | 1.01876 (5) | 0.02142 (16) | |
H1O2 | −0.091 (5) | 0.9451 (12) | 1.0523 (16) | 0.068 (5)* | |
O3 | 0.17686 (17) | 0.58676 (4) | 0.92170 (5) | 0.01959 (15) | |
C1 | 0.2204 (2) | 0.81461 (6) | 0.86862 (7) | 0.01512 (16) | |
C2 | 0.1573 (2) | 0.73618 (6) | 0.91952 (7) | 0.01515 (16) | |
H2A | 0.0504 | 0.7341 | 0.9906 | 0.018* | |
C3 | 0.2516 (2) | 0.66069 (5) | 0.86565 (7) | 0.01517 (16) | |
C4 | 0.4082 (2) | 0.66360 (6) | 0.76109 (7) | 0.01698 (17) | |
H4A | 0.4738 | 0.6121 | 0.7245 | 0.020* | |
C5 | 0.4674 (2) | 0.74261 (6) | 0.71099 (7) | 0.01847 (18) | |
H5A | 0.5727 | 0.7447 | 0.6396 | 0.022* | |
C6 | 0.3755 (2) | 0.81821 (6) | 0.76329 (7) | 0.01759 (17) | |
H6A | 0.4169 | 0.8718 | 0.7283 | 0.021* | |
C7 | 0.1244 (2) | 0.89573 (6) | 0.92491 (7) | 0.01636 (17) | |
C8 | 0.2877 (2) | 0.50822 (6) | 0.87173 (7) | 0.01985 (18) | |
H8A | 0.2229 | 0.4601 | 0.9198 | 0.030* | |
H8B | 0.5434 | 0.5091 | 0.8628 | 0.030* | |
H8C | 0.1726 | 0.5017 | 0.7984 | 0.030* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0301 (3) | 0.0151 (3) | 0.0223 (3) | −0.0001 (2) | 0.0063 (2) | 0.0011 (2) |
O2 | 0.0285 (3) | 0.0176 (3) | 0.0184 (3) | 0.0009 (2) | 0.0077 (2) | −0.0004 (2) |
O3 | 0.0254 (3) | 0.0134 (3) | 0.0202 (3) | 0.0012 (2) | 0.0073 (2) | 0.0000 (2) |
C1 | 0.0147 (3) | 0.0151 (4) | 0.0156 (3) | 0.0003 (3) | 0.0006 (2) | −0.0005 (3) |
C2 | 0.0151 (3) | 0.0165 (4) | 0.0139 (3) | 0.0002 (3) | 0.0018 (2) | −0.0004 (3) |
C3 | 0.0146 (3) | 0.0150 (4) | 0.0159 (3) | 0.0000 (3) | 0.0013 (2) | 0.0001 (3) |
C4 | 0.0161 (3) | 0.0190 (4) | 0.0160 (3) | 0.0008 (3) | 0.0025 (3) | −0.0026 (3) |
C5 | 0.0175 (4) | 0.0231 (4) | 0.0149 (4) | −0.0005 (3) | 0.0035 (3) | −0.0001 (3) |
C6 | 0.0182 (4) | 0.0183 (4) | 0.0164 (4) | −0.0009 (3) | 0.0023 (3) | 0.0021 (3) |
C7 | 0.0164 (3) | 0.0170 (4) | 0.0157 (3) | 0.0006 (3) | 0.0008 (3) | 0.0001 (3) |
C8 | 0.0217 (4) | 0.0141 (4) | 0.0238 (4) | 0.0017 (3) | 0.0033 (3) | −0.0029 (3) |
O1—C7 | 1.2394 (10) | C3—C4 | 1.3956 (12) |
O2—C7 | 1.3110 (10) | C4—C5 | 1.3909 (12) |
O2—H1O2 | 1.01 (2) | C4—H4A | 0.9500 |
O3—C3 | 1.3666 (10) | C5—C6 | 1.3829 (12) |
O3—C8 | 1.4301 (10) | C5—H5A | 0.9500 |
C1—C2 | 1.3896 (12) | C6—H6A | 0.9500 |
C1—C6 | 1.4019 (11) | C8—H8A | 0.9800 |
C1—C7 | 1.4823 (12) | C8—H8B | 0.9800 |
C2—C3 | 1.3925 (12) | C8—H8C | 0.9800 |
C2—H2A | 0.9500 | ||
C7—O2—H1O2 | 109.8 (11) | C6—C5—H5A | 119.4 |
C3—O3—C8 | 116.94 (7) | C4—C5—H5A | 119.4 |
C2—C1—C6 | 120.52 (8) | C5—C6—C1 | 119.09 (8) |
C2—C1—C7 | 120.47 (7) | C5—C6—H6A | 120.5 |
C6—C1—C7 | 119.01 (8) | C1—C6—H6A | 120.5 |
C1—C2—C3 | 119.62 (7) | O1—C7—O2 | 122.85 (8) |
C1—C2—H2A | 120.2 | O1—C7—C1 | 121.76 (7) |
C3—C2—H2A | 120.2 | O2—C7—C1 | 115.39 (7) |
O3—C3—C2 | 115.43 (7) | O3—C8—H8A | 109.5 |
O3—C3—C4 | 124.26 (7) | O3—C8—H8B | 109.5 |
C2—C3—C4 | 120.31 (8) | H8A—C8—H8B | 109.5 |
C5—C4—C3 | 119.34 (8) | O3—C8—H8C | 109.5 |
C5—C4—H4A | 120.3 | H8A—C8—H8C | 109.5 |
C3—C4—H4A | 120.3 | H8B—C8—H8C | 109.5 |
C6—C5—C4 | 121.13 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···O1i | 1.008 (19) | 1.626 (19) | 2.6295 (9) | 173.3 (17) |
C8—H8A···O3ii | 0.98 | 2.56 | 3.4016 (11) | 144 |
Symmetry codes: (i) −x, −y+2, −z+2; (ii) −x, −y+1, −z+2. |
Funding information
QAW thanks the Malaysian Government and USM for the award of the post of Research Officer under the Research University Individual Grant (1001/PFIZIK/8011080). HCK thanks the Malaysian Government for a MyBrain15 scholarship.
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