research communications
of the salt 2-amino-6-bromopyridinium 2,3,5,6-tetrafluorobenzoate
aDepartment of Chemistry, Missouri State University, Springfield, MO 65897, USA
*Correspondence e-mail: ericbosch@missouristate.edu
The 5H6BrN2+·C7HF4O2−, contains one pyridinium cation and one benzoate anion. In the crystal, the aminopyridinium cationic unit forms two hydrogen bonds to the benzoate oxygen atoms in an R22(8) motif. Two pyridinium benzoate units are hydrogen bonded through self-complementary hydrogen bonds between the second amine hydrogen and a carboxylate O with a second R22(8) motif to form a discrete hydrogen-bonded complex containing two 2-amino-6-bromopyridinium moieties and two 2,3,5,6-tetrafluorobenzoate moieties. The 2-amino-6-bromopyridinium moieties π-stack in a head-to-tail mode with a centroid–centroid separation of 3.7227 (12) Å and adjacent tetrafluorobenzoates also π-stack in a head-to-tail mode with a centroid–centroid separation of 3.6537 (13) Å.
of the salt 2-amino-6-bromopyridinium 2,3,5,6-tetrafluorobenzoate, CKeywords: crystal structure; 2-amino-6-bromopyridine; 2,3,5,6-tetrafluorobenzoic acid; 2-amino-6-pyridinium 2,3,5,6-tetrafluorobenzoate; hydrogen bond.
CCDC reference: 1893117
1. Chemical context
The fields of crystal engineering and supramolecular chemistry rely on the identification and application of versatile synthons to guide the construction of molecular solids (Desiraju, 1995, 2013). For example carboxylic acids are known to form a centrosymmetric dimer through self-complementary O—H⋯O hydrogen bonds (Fig. 1a) in addition to hydrogen-bonded catemer chains and rings. It has been shown that these hydrogen bonds can be diverted by O—H⋯N hydrogen bonding to pyridines, often supported by a non-conventional pyridine C—H⋯O hydrogen bond (Fig. 1b). The interaction of the more basic pyridines, for example 4-(N,N-dimethylamino)pyridine, with carboxylic acids most often yields charge-assisted hydrogen-bonded salts (Fig. 1c). Similarly, the combination of 2-aminopyridines and benzoic acids has been demonstrated to be a reliable supramolecular synthon resulting in the formation of charge-assisted hydrogen-bonded complexes shown in Fig. 1d (Bis & Zaworotko, 2005). The formation of hydrogen-bonded co-crystals or salts of and acids has potential in the pharmaceutical field where the physicochemical properties of active pharmaceuticals, including aqueous solubility and physical and chemical stability, may be modulated and tailored by or salt formation (Schultheiss & Newman, 2009). For example a study involving the non-steroidal anti-inflammatory drug piroxicam reported the formation of 19 pyridine based co-crystals (Wales et al., 2012). The present study presents the first co-crystal/salt formed between a substituted pyridine and 2,3,5,6-tetrafluorobenzoic acid.
2. Structural commentary
The , contains one pyridinium cation and one benzoate anion that are held together by two charge-assisted hydrogen bonds (Table 1, first two entries) to form an R22(8) motif (Fig. 2). The bond distance C12—O2 is slightly shorter than C12—O1, with distances of 1.236 (2) and 1.267 (2) Å respectively. The atoms that form this R22(8) motif (Fig. 1) are almost coplanar, with the maximum deviation above and below the least-squares plane calculated through all of these atoms being 0.169 (7) and −0.147 (8) Å, respectively, for O2 and O1. The angle between the planes defined by the benzene and pyridine rings is 67.04 (7)° and the carboxylate anion is twisted out of the plane of the benzene ring, with C12 0.103 (3) Å above the plane of the benzene ring and O1 1.043 (3) Å above, and O2 0.713 (4) Å below the plane defined by the benzene ring.
of the salt 2-amino-6-bromopyridinium 2,3,5,6-tetrafluorobenzoate (I)3. Supramolecular features
In the , adjacent amino pyridinium benzoate salt units are linked into dimeric salt complexes with self-complementary hydrogen bonds (Table 1, entry 3) from the second amine hydrogen atom and carboxylate oxygen atom O2 in a second R42(8) motif (Fig. 3). The two components are relatively well separated within the into zones parallel to the c axis.
salt (I)There are two interactions that involve the tetrafluorobenzoate (Fig. 4). Adjacent tetrafluorobenzoates π-stack in a head-to-tail mode with a Cg1⋯Cg1i distance of 3.6537 (13) Å [symmetry code: (i) −x, 1 − y, z; Cg1 is the centroid of the benzene ring C6–C11] and there is a close C—F⋯π interaction with a Cg1⋯F3ii distance of 3.1640 (17) Å [symmetry code: (ii) −x, y − , − z].
The 2-aminopyridinium groups form offset alternating head-to-tail π-stacks parallel to the b axis (Fig. 5) with a Cg2⋯Cg2iii distance of 3.7227 (12) Å and a shortest perpendicular interplanar distance of 3.2547 (8) Å [symmetry code: (iii) 1 − x, y − , − z; Cg2 is the centroid of the pyridine ring].
There is one short contact to the bromine with a C9⋯Br1iv distance of 3.867 (2) Å [symmetry code: (iv) 1 − x, 1 − y, 2 − z].
4. Database survey
A search of the Cambridge Crystallographic Database (Version 5.39, update of August 2018; Groom et al., 2016) using Conquest (Bruno et al., 2002) for structures including the neutral carboxylic acid dimer synthon as shown in Fig. 1a revealed 6,016 hits, while a search for neutral pyridine carboxylic acid interactions where the distance between the acid proton and the pyridine N is equal to or less than the sum of the van der Waals radii revealed 2189 hits. In 966 of the 2189 structures the distance between the carbonyl O and the pyridine H is also equal to or less than the sum of the van der Waals radii, corresponding to the synthon shown in Fig. 1b. A related search of the Cambridge Crystallographic Database for co-crystals with 4-(N,N-dimethylamino)pyridine and carboxylic acids revealed only four neutral co-crystals and 54 structures corresponding to the pyridinium carboxylate as shown in Fig. 1c. A similar search for co-crystals formed between 2-aminopyridines with benzoic acids yielded 41 hits, of which 40 feature charge-assisted aminopyridinium carboxylate hydrogen-bonded co-crystals as the result of proton transfer shown in Fig. 1d. The structure that is reported to form a neutral hydrogen-bonded complex corresponds to the formed between 2-aminopyridine and 4-aminobenzoic acid [refcode WOPCOV; Chandrasekaran & Babu, 2014]. Finally there is only one reported of 2,3,5,6-tetrafluorobenzoic acid, or the corresponding 2,3,5,6-tetrafluorobenzoate, with an organic base. In that example theophylline forms a neutral hydrogen-bonded complex (Corpinot et al., 2016).
5. Synthesis and crystallization
2-Amino-6-bromopyridine and 2,3,5,6-tetrafluorobenzoic acid were used as supplied. An equimolar amount (0.1 mmol) of each component were added to a screw-capped vial and 3 mL of ethanol added to effect a clear colorless solution that was allowed to slowly concentrate over two weeks. A homogeneous mass of crystals was obtained.
6. Refinement
Crystal data, data collection and structure . All hydrogen atoms were located in Fourier-difference maps. Hydrogen atoms involved in hydrogen-bonding interactions were restrained in the with N—H = 0.87 (2) Å and with Uiso(H) = 1.2Ueq(N). The aromatic H atoms were included in the at calculated positions with C—H = 0.95 Å and Uiso(H) = 1.2Ueq(C).
details are summarized in Table 2Supporting information
CCDC reference: 1893117
https://doi.org/10.1107/S2056989019001294/pk2612sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989019001294/pk2612Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989019001294/pk2612Isup3.cml
Data collection: SMART (Bruker, 2014); cell
SMART (Bruker, 2014); data reduction: SAINT (Bruker, 2014); program(s) used to solve structure: SHELXT2018/2 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018/3 (Sheldrick, 2015b); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: X-SEED (Barbour, 2001).C5H6BrN2+·C7HF4O2− | F(000) = 720 |
Mr = 367.11 | Dx = 1.900 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 13.7230 (9) Å | Cell parameters from 3850 reflections |
b = 6.5757 (4) Å | θ = 2.7–25.7° |
c = 15.3224 (10) Å | µ = 3.26 mm−1 |
β = 111.841 (1)° | T = 100 K |
V = 1283.42 (14) Å3 | Cut block, colourless |
Z = 4 | 0.25 × 0.20 × 0.03 mm |
Bruker APEXII CCD diffractometer | 2847 independent reflections |
Radiation source: fine-focus sealed tube | 2395 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
Detector resolution: 8.3660 pixels mm-1 | θmax = 27.1°, θmin = 1.6° |
phi and ω scans | h = −17→17 |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | k = −8→8 |
Tmin = 0.788, Tmax = 1.000 | l = −19→19 |
16099 measured reflections |
Refinement on F2 | 3 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.026 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.059 | w = 1/[σ2(Fo2) + (0.0271P)2 + 0.3891P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.002 |
2847 reflections | Δρmax = 0.41 e Å−3 |
199 parameters | Δρmin = −0.32 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.35106 (2) | 0.41134 (3) | 0.84202 (2) | 0.01733 (7) | |
F1 | 0.10223 (10) | 0.15160 (19) | 0.49369 (9) | 0.0248 (3) | |
F4 | 0.17441 (10) | 0.8060 (2) | 0.40322 (9) | 0.0275 (3) | |
F2 | −0.10146 (10) | 0.2028 (2) | 0.38905 (10) | 0.0321 (3) | |
F3 | −0.03037 (12) | 0.8562 (2) | 0.30158 (10) | 0.0365 (4) | |
O1 | 0.27555 (11) | 0.4079 (2) | 0.59997 (10) | 0.0188 (3) | |
O2 | 0.32636 (12) | 0.4894 (3) | 0.48172 (11) | 0.0238 (4) | |
N1 | 0.46382 (13) | 0.4100 (3) | 0.72562 (12) | 0.0130 (4) | |
H1 | 0.3977 (13) | 0.404 (3) | 0.6815 (14) | 0.016* | |
N2 | 0.53368 (14) | 0.4068 (3) | 0.61009 (13) | 0.0171 (4) | |
H2A | 0.4701 (14) | 0.424 (3) | 0.5700 (14) | 0.020* | |
H2B | 0.5859 (15) | 0.422 (3) | 0.5919 (16) | 0.020* | |
C4 | 0.57133 (17) | 0.4158 (3) | 0.88912 (15) | 0.0170 (4) | |
H4 | 0.577544 | 0.416389 | 0.952978 | 0.020* | |
C2 | 0.65046 (17) | 0.4148 (3) | 0.77289 (15) | 0.0172 (4) | |
H2 | 0.711166 | 0.414715 | 0.757094 | 0.021* | |
C12 | 0.25906 (16) | 0.4564 (3) | 0.51564 (15) | 0.0155 (5) | |
C5 | 0.47591 (16) | 0.4124 (3) | 0.81748 (14) | 0.0147 (4) | |
C1 | 0.54936 (16) | 0.4114 (3) | 0.70135 (15) | 0.0136 (4) | |
C7 | 0.07144 (17) | 0.3268 (3) | 0.44649 (15) | 0.0173 (5) | |
C3 | 0.66028 (17) | 0.4183 (3) | 0.86458 (15) | 0.0182 (5) | |
H3 | 0.728259 | 0.422448 | 0.912677 | 0.022* | |
C11 | 0.10738 (17) | 0.6527 (3) | 0.40039 (15) | 0.0183 (5) | |
C10 | 0.00175 (18) | 0.6802 (4) | 0.34810 (15) | 0.0228 (5) | |
C8 | −0.03368 (17) | 0.3535 (4) | 0.39179 (16) | 0.0206 (5) | |
C6 | 0.14445 (16) | 0.4777 (3) | 0.45227 (14) | 0.0157 (5) | |
C9 | −0.06994 (18) | 0.5308 (4) | 0.34355 (15) | 0.0241 (5) | |
H9 | −0.142601 | 0.549773 | 0.307970 | 0.029* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.01626 (12) | 0.02221 (12) | 0.01623 (12) | −0.00014 (9) | 0.00917 (8) | 0.00008 (9) |
F1 | 0.0203 (7) | 0.0188 (7) | 0.0320 (8) | −0.0013 (5) | 0.0061 (6) | 0.0036 (6) |
F4 | 0.0277 (8) | 0.0257 (8) | 0.0320 (8) | −0.0027 (6) | 0.0144 (6) | 0.0081 (6) |
F2 | 0.0175 (7) | 0.0384 (9) | 0.0383 (9) | −0.0100 (6) | 0.0081 (6) | −0.0041 (7) |
F3 | 0.0341 (8) | 0.0443 (9) | 0.0320 (9) | 0.0155 (7) | 0.0133 (7) | 0.0215 (7) |
O1 | 0.0134 (7) | 0.0282 (9) | 0.0142 (8) | 0.0001 (7) | 0.0045 (6) | 0.0028 (7) |
O2 | 0.0150 (8) | 0.0418 (10) | 0.0171 (8) | −0.0004 (7) | 0.0089 (7) | 0.0003 (7) |
N1 | 0.0101 (8) | 0.0137 (9) | 0.0154 (9) | 0.0021 (7) | 0.0051 (7) | 0.0015 (7) |
N2 | 0.0115 (9) | 0.0234 (10) | 0.0184 (10) | 0.0008 (8) | 0.0079 (8) | 0.0027 (8) |
C4 | 0.0196 (11) | 0.0169 (11) | 0.0134 (10) | 0.0032 (9) | 0.0049 (9) | −0.0012 (9) |
C2 | 0.0135 (10) | 0.0150 (11) | 0.0231 (12) | 0.0021 (9) | 0.0070 (9) | 0.0004 (9) |
C12 | 0.0145 (11) | 0.0167 (11) | 0.0159 (11) | −0.0007 (8) | 0.0062 (9) | −0.0057 (8) |
C5 | 0.0153 (10) | 0.0129 (10) | 0.0173 (11) | 0.0005 (9) | 0.0077 (9) | 0.0003 (9) |
C1 | 0.0137 (10) | 0.0093 (10) | 0.0195 (11) | 0.0009 (8) | 0.0083 (8) | 0.0018 (8) |
C7 | 0.0174 (11) | 0.0193 (11) | 0.0154 (11) | 0.0014 (9) | 0.0062 (9) | −0.0003 (9) |
C3 | 0.0143 (11) | 0.0169 (11) | 0.0191 (11) | 0.0022 (9) | 0.0011 (9) | −0.0012 (9) |
C11 | 0.0192 (11) | 0.0240 (12) | 0.0152 (11) | −0.0010 (9) | 0.0103 (9) | 0.0006 (9) |
C10 | 0.0226 (12) | 0.0313 (14) | 0.0159 (11) | 0.0111 (11) | 0.0088 (10) | 0.0098 (10) |
C8 | 0.0132 (11) | 0.0312 (13) | 0.0191 (12) | −0.0056 (10) | 0.0080 (9) | −0.0057 (10) |
C6 | 0.0150 (11) | 0.0225 (12) | 0.0118 (10) | 0.0018 (9) | 0.0075 (9) | −0.0036 (9) |
C9 | 0.0129 (11) | 0.0439 (16) | 0.0144 (12) | 0.0052 (10) | 0.0037 (9) | 0.0002 (10) |
Br1—C5 | 1.886 (2) | C4—C3 | 1.405 (3) |
F1—C7 | 1.342 (2) | C4—H4 | 0.9500 |
F4—C11 | 1.355 (3) | C2—C3 | 1.361 (3) |
F2—C8 | 1.349 (3) | C2—C1 | 1.413 (3) |
F3—C10 | 1.345 (3) | C2—H2 | 0.9500 |
O1—C12 | 1.267 (2) | C12—C6 | 1.517 (3) |
O2—C12 | 1.236 (2) | C7—C8 | 1.384 (3) |
N1—C5 | 1.355 (3) | C7—C6 | 1.389 (3) |
N1—C1 | 1.357 (3) | C3—H3 | 0.9500 |
N1—H1 | 0.909 (16) | C11—C10 | 1.383 (3) |
N2—C1 | 1.334 (3) | C11—C6 | 1.383 (3) |
N2—H2A | 0.868 (16) | C10—C9 | 1.374 (3) |
N2—H2B | 0.866 (16) | C8—C9 | 1.371 (3) |
C4—C5 | 1.360 (3) | C9—H9 | 0.9500 |
C5—N1—C1 | 120.04 (18) | F1—C7—C8 | 118.9 (2) |
C5—N1—H1 | 118.4 (15) | F1—C7—C6 | 120.24 (19) |
C1—N1—H1 | 121.5 (15) | C8—C7—C6 | 120.8 (2) |
C1—N2—H2A | 117.8 (16) | C2—C3—C4 | 120.9 (2) |
C1—N2—H2B | 120.3 (16) | C2—C3—H3 | 119.5 |
H2A—N2—H2B | 119 (2) | C4—C3—H3 | 119.5 |
C5—C4—C3 | 117.10 (19) | F4—C11—C10 | 118.3 (2) |
C5—C4—H4 | 121.4 | F4—C11—C6 | 120.04 (19) |
C3—C4—H4 | 121.4 | C10—C11—C6 | 121.6 (2) |
C3—C2—C1 | 119.5 (2) | F3—C10—C9 | 120.1 (2) |
C3—C2—H2 | 120.2 | F3—C10—C11 | 119.1 (2) |
C1—C2—H2 | 120.2 | C9—C10—C11 | 120.8 (2) |
O2—C12—O1 | 126.5 (2) | F2—C8—C9 | 120.0 (2) |
O2—C12—C6 | 118.28 (19) | F2—C8—C7 | 118.5 (2) |
O1—C12—C6 | 115.18 (18) | C9—C8—C7 | 121.5 (2) |
N1—C5—C4 | 123.21 (19) | C11—C6—C7 | 117.1 (2) |
N1—C5—Br1 | 115.97 (15) | C11—C6—C12 | 121.12 (19) |
C4—C5—Br1 | 120.82 (16) | C7—C6—C12 | 121.8 (2) |
N2—C1—N1 | 117.94 (19) | C8—C9—C10 | 118.1 (2) |
N2—C1—C2 | 122.87 (19) | C8—C9—H9 | 120.9 |
N1—C1—C2 | 119.18 (19) | C10—C9—H9 | 120.9 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.91 (2) | 1.68 (2) | 2.585 (2) | 177 (2) |
N2—H2A···O2 | 0.87 (2) | 1.98 (2) | 2.845 (2) | 175 (2) |
N2—H2B···O2i | 0.87 (2) | 2.02 (2) | 2.854 (2) | 162 (2) |
C4—H4···Br1ii | 0.95 | 3.13 | 4.017 (2) | 155 |
C9—H9···Br1iii | 0.95 | 2.94 | 3.867 (2) | 166 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+1, −z+2; (iii) −x, −y+1, −z+1. |
Acknowledgements
We thank the Missouri State University Provost Incentive Fund that funded the purchase of the X-ray diffractometer.
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