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4,15-Di­methyl-7,12-diazo­niatri­cyclo­[10.4.0.02,7]hexa­deca-1(12),2,4,6,13,15-hexa­ene dibromide monohydrate

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aDepartment of Chemistry & Biochemistry, The Ohio State University, 484 W. 12th Avenue, Columbus, Ohio, 43210, USA, bCampus Chemical Instrument Center, The Ohio State University, 496 W. 12th Avenue, Columbus, Ohio, 43210, USA, and cDepartment of Chemistry, University of Kentucky, 505 Rose Street, Lexington, Kentucky, 40506, USA
*Correspondence e-mail: behrman.1@osu.edu

Edited by J. Ellena, Universidade de Sâo Paulo, Brazil (Received 3 August 2020; accepted 13 August 2020; online 18 August 2020)

The title compound, C16H20N22+·2Br·H2O (1) is a member of the class of compounds called viologens. Viologens are quaternary salts of di­pyridyls and are especially useful as redox indicators as a result of their large negative one-electron reduction potentials. Compound 1 consists of a dication composed of a pair of 4-methyl­pyridine rings mutually joined at the 2-position, with a dihedral angle between the pyridine rings of 62.35 (4)°. In addition, the rings are tethered via the pyridine nitro­gen atoms by a tetra­methyl­ene bridge. Charge balance is provided by a pair of bromide anions, which are hydrogen bonded to a single water mol­ecule [DO⋯Br = 3.3670 (15) and 3.3856 (15) Å]. The crystal structure of 1, details of an improved synthesis, and a full analysis of its NMR spectra are presented.

1. Chemical context

The title compound (1) is a member of the class of compounds called viologens. Viologens are quaternary salts of di­pyridyls, which have proven useful as redox indicators as a result of their large negative one-electron reduction potentials (Anderson & Patel, 1984[Anderson, R. F. & Patel, K. B. (1984). J. Chem. Soc. Faraday Trans. 1, 80, 2693-2702.]). The herbicides, paraquat, and diquat are viologens. We found that the literature synthesis of 4,4′-dimethyl-2,2′-dipyridyl-N,N′-tetra­methyl­ene dibromide, i.e., 1 (Spotswood & Tanzer, 1967[Spotswood, T. M. & Tanzer, C. I. (1967). Aust. J. Chem. 20, 1213-1225.]) could be improved by a change in the solvent. We report details of our improved synthesis of 1 along with the crystal structure and a full analysis of its NMR spectra.

[Scheme 1]

Spotswood & Tanzer (1967[Spotswood, T. M. & Tanzer, C. I. (1967). Aust. J. Chem. 20, 1213-1225.]) give general directions for the syntheses of a series of bridged dimethyl 2,2′-dipyridyl salts. Our attempts to make the title compound by their directions failed; only a salt of the starting dipyridyl was recovered. Homer & Tomlinson (1960[Homer, R. F. & Tomlinson, T. E. (1960). J. Chem. Soc. pp. 2498-2503.]) noted that HBr is formed by de­hydro­halogenation of the dibromide. We think that the conditions used by Anderson & Patel (1984[Anderson, R. F. & Patel, K. B. (1984). J. Chem. Soc. Faraday Trans. 1, 80, 2693-2702.]), i.e., refluxing o-di­chloro­benzene, b.p. 453 K, produced a good deal of HBr, which protonated the dipyridyl, rendering it unreactive. Carrying out the reaction in refluxing xylene (mixed isomers, b.p. ca 413 K) does not produce HBr, but the reaction is slow; after five h, about 50% of the starting dipyridyl was recovered. The quaternization of tertiary amines is known as the Menschutkin reaction (Menschutkin, 1890[Menschutkin, N. (1890). Z. Physik. Chem. 5, 589-600.]). The velocity of this reaction shows a strong dependence on solvent (Abraham & Grellier, 1976[Abraham, M. H. & Grellier, P. L. (1976). J. Chem. Soc. Perkin II 1735-1741.]), with about a 65,000-fold increase from hexane to DMSO. The addition of nitro­benzene to the solvent gave satisfactory yields of the product in a reasonable time (see Synthesis and crystallization section).

2. Structural commentary

The mol­ecular structure of 1 is shown in Fig. 1[link]. It consists of a dication composed of a pair of 4-methyl­pyridine rings mutually joined at their 2-positions, with a dihedral angle between the pyridine rings of 62.35 (4)°. In addition, the rings are tethered via the pyridine nitro­gen atoms by a tetra­methyl­ene bridge. There are no unusual bond lengths or angles. As a result of the two bridges between the pyridine rings, 1 occurs as two optical isomers, and therefore provides an example of atropisomerism (Eliel et al., 1994[Eliel, E. L., Wilen, S. H. & Mander, L. N. (1994). Stereochemistry of Organic Compounds. New York: Wiley.]; Alkorta et al., 2012[Alkorta, I., Elguero, J., Roussel, C., Vanthunyne, N. & Piras, P. (2012). Adv. Heterocycl. Chem., 105, 1-188.]; Mancinelli et al., 2020[Mancinelli, M., Bencivenni, G., Pecorari, D. & Mazzanti, A. (2020). Eur. J. Org. Chem. 2020, 4070-4086.]). Crystals of 1, however, were centrosymmetric, with space group P21/n, and are thus strictly racemic. Charge balance is provided by a pair of bromide anions, which are hydrogen bonded to a single water mol­ecule of crystallization [DO⋯Br = 3.3670 (15) and 3.3856 (15) Å] (Table 1[link]).

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
C1—H1⋯Br2i 0.95 2.68 3.5929 (18) 161
C2—H2⋯Br1ii 0.95 2.86 3.7762 (18) 161
C7—H7B⋯Br1i 0.99 2.96 3.7700 (19) 139
C1′—H1′⋯Br2iii 0.95 2.64 3.5765 (17) 170
C2′—H2′⋯Br1iv 0.95 2.82 3.6285 (17) 143
C4′—H4′⋯Br1 0.95 2.74 3.6735 (17) 167
C7′—H7B′⋯Br1v 0.99 3.04 3.6581 (18) 122
O1W—H1W⋯Br1 0.81 (2) 2.58 (2) 3.3856 (15) 177 (3)
O1W—H2W⋯Br2 0.81 (2) 2.56 (2) 3.3670 (15) 175 (3)
Symmetry codes: (i) [-x+{\script{1\over 2}}, y-{\script{1\over 2}}, -z+{\script{1\over 2}}]; (ii) -x+1, -y+1, -z; (iii) -x+1, -y+1, -z+1; (iv) [x+{\script{1\over 2}}, -y+{\script{3\over 2}}, z+{\script{1\over 2}}]; (v) [-x+{\script{3\over 2}}, y-{\script{1\over 2}}, -z+{\script{1\over 2}}].
[Figure 1]
Figure 1
A view of 1 showing the atom-labeling scheme. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen bonds between water and Br are shown as dashed lines.

3. Supra­molecular features

Aside from the hydrogen bonds between the water mol­ecule and bromide anions, the only other notable inter­molecular contacts are inter­actions of type C—H⋯Br (Fig. 2[link], Table 1[link]), with distances that range between 3.5765 (17) and 3.7762 (18) Å for type Cpyrid­yl⋯Br and 3.6581 (18) to 3.7700 (19) Å for type Cmethyl­ene⋯Br. For comparison, the standard van der Waals radii of C, H, and Br (Bondi, 1964[Bondi, A. (1964). J. Phys. Chem. 68, 441-451.]) are 1.2, 1.7, and 1.85 Å, respectively. The percentages of atom⋯atom contact types between asymmetric units were obtained from Hirshfeld-surface fingerprint plots (Figs. S1 and S2 in the supporting information; Spackman & McKinnon, 2002[Spackman, M. A. & McKinnon, J. J. (2002). CrystEngComm, 4, 378-392.]; McKinnon et al., 2004[McKinnon, J. J., Spackman, M. A. & Mitchell, A. S. (2004). Acta Cryst. B60, 627-668.]) using CrystalExplorer 17.5 (Turner et al., 2017[Turner, M.J., Mckinnon, J.J., Wolff, S.K., Grimwood, D.J., Spackman, P.R., Jayatilaka, D. & Spackman, M.A. (2017). Crystal Explorer 17.5. The University of Western Australia.]), and are presented in Table 2[link].

Table 2
Percentage of atom⋯atom contacts between asymmetric units in 1

H⋯H 57.0
H⋯Br 26.2
H⋯C 9.0
H⋯O 4.7
C⋯Br 1.7
N⋯Br 1.1
C⋯C 0.4
N⋯N 0.0
O⋯O 0.0
Br⋯Br 0.0
Contact percentages were derived from Hirshfeld-surface fingerprint plots (Spackman & McKinnon, 2002[Spackman, M. A. & McKinnon, J. J. (2002). CrystEngComm, 4, 378-392.]; McKinnon et al., 2004[McKinnon, J. J., Spackman, M. A. & Mitchell, A. S. (2004). Acta Cryst. B60, 627-668.]) using CrystalExplorer 17.5 (Turner et al., 2017[Turner, M.J., Mckinnon, J.J., Wolff, S.K., Grimwood, D.J., Spackman, P.R., Jayatilaka, D. & Spackman, M.A. (2017). Crystal Explorer 17.5. The University of Western Australia.]). Reciprocal contacts are included in the totals. The sum of all percentages in the table is 100.1% due to accumulation of rounding errors.
[Figure 2]
Figure 2
A packing plot of 1 viewed down the crystallographic a axis. Hydrogen bonds between water and Br are shown as dashed lines, while weaker C—H⋯Br inter­actions are shown as dotted lines.

4. Database survey

The most similar structures to 1 in the Cambridge Structural Database (CSD, V5.41, update of November 2019; Groom et al., 2016[Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171-179.]) are BIYTEL, BIYTUB, BIYTOV, BIYVAJ, and BIYTIP (Sanchez et al., 2019[Sanchez, M. L. K., Wu, C. H., Adams, M. W. W. & Dyer, R. B. (2019). Chem. Commun. 55, 5579-5582.]). BIYTEL has a tri­methyl­ene bridge, BIYTUB has a di­methyl­ene bridge, BIYTOV has a tri­methyl­ene bridge but lacks the 4-Me substituents, BIYVAJ has a tri­methyl­ene bridge but 5-Me groups instead of 4-Me, and BIYTIP has a di­methyl­ene bridge but is a methanol solvate. CSD entry TMEPYR (Derry & Hamor, 1970[Derry, J. E. & Hamor, T. A. (1970). J. Chem. Soc. D, pp. 1284-1286.]) contains a tetra­methyl­ene bridge, but lacks 4-Me subsituents. CSD entries DIQUAT (Derry & Hamor, 1969[Derry, J. E. & Hamor, T. A. (1969). Nature, 221, 464-465.]) and DQUATB (Sullivan & Williams, 1976[Sullivan, P. D. & Williams, M. L. (1976). J. Am. Chem. Soc. 98, 1711-1716.]), have di­methyl­ene bridges but also lack the 4-Me substituents. Atomic coordinates for TMEPYR, DIQUAT and DQUATB are, however, not present in the CSD. CSD entry PICGAM (Talele et al., 2018[Talele, H. R., Koval, D., Severa, L., Reyes-Gutiérrez, P. E., Císařová, I., Sázelová, P., Šaman, D., Bednárová, L., Kašička, V. & Teplý, F. (2018). Chem. Eur. J. 24, 7601-7604.]) has a –CH2C6H4CH2– linker and is an aceto­nitrile solvate. These crystal structures have Br anions for charge balance and (unless otherwise stated) include water of crystallization. The tetra­methyl­ene bridge is present in CSD entries HIJGAI (Hofbauer et al., 1996[Hofbauer, M., Möbius, M., Knoch, F. & Benedix, R. (1996). Inorg. Chim. Acta, 247, 147-154.]), YOBWAN (Schmauch et al., 1995[Schmauch, G., Knoch, F. & Kisch, H. (1995). Chem. Ber. 128, 303-307.]), and YUFCOR (Knoch et al., 1995[Knoch, F., Schmauch, G. & Kisch, H. (1995). Z. Kristallogr., 210, 76-77.]), but these crystal structures feature complex organometallic anions rather than bromide and are not hydrates. The dihedral angle between the two pyridine rings in each structure is strongly dependent on the length of the bridging tether. These range between 15.78–19.01° for di­methyl­ene, 49.40–53.96° for tri­methyl­ene, and 63.87–67.15° for tetra­methyl­ene [cf. 62.35 (4)° in 1]. In PICGAM, the dihedral angle is 72.64°, presumably as a result of the increased rigidity of the tether.

5. NMR spectroscopic analysis

The low-field NMR spectrum has been well analyzed by Spotswood & Tanzer (1967[Spotswood, T. M. & Tanzer, C. I. (1967). Aust. J. Chem. 20, 1213-1225.]), with whose data we agree. However, the instruments available in 1967 were not able to resolve the bridge protons. Thummel et al. (1985[Thummel, R. P., Lefoulon, F. & Mahadevan, R. (1985). J. Org. Chem. 50, 3824-3828.]) reported data on the bipyridyl analog, that is, without the 4,4′-methyl groups. Our data closely match theirs (see especially Fig. 3[link] of Thummel et al., 1985[Thummel, R. P., Lefoulon, F. & Mahadevan, R. (1985). J. Org. Chem. 50, 3824-3828.]), showing an identical complex splitting pattern for the four resolved signals. The protons of the methyl group exchange with deuterons in a base-catalyzed reaction (Zoltewicz & Jacobson, 1978[Zoltewicz, J. A. & Jacobson, H. L. (1978). J. Org. Chem. 43, 19-23.]). Our NMR sample, which also showed exchange, was neutral. Exchange was prevented by adjusting the `pH' to ∼1 with DCl. This exchange with solvent deuterium led to some deuterium couplings with both protons and carbon and hence multiplicities in the NMR spectra, which were initially puzzling. Calder et al. (1967[Calder, I. C., Spotswood, M. & Tanzer, C. I. (1967). Aust. J. Chem. 20, 1195-1212.]) discuss the effect of the length of the bridging group on the NMR spectra and the mobility of the structures.

[Figure 3]
Figure 3
Analysis of 2-D NMR spectra: (a) HSQC and HMBC resonance assignments, (b) COSY resonance assignments. Peaks marked by an asterisk correspond to water or multiple quantum artifacts. 1-D traces are shown to the left and top of the figure.

There are eight resonance signals in the 1H NMR spectrum recorded in D2O, including one on the downfield shoulder of the residual water resonance. All but one of the signals are of equal intensity and the one at 2.68 ppm is about three times larger. The 13C NMR spectrum shows eight signals (C1–C8), two of which (C2 and C4) are barely separated. Qu­anti­tative measurement using inverse-gated decoupling with a long recycle delay (60 s) shows that the carbon signals are of equal intensity. The 1-D 13C DEPT (Distortionless Enhancement by Polarization Transfer) and 2-D multiplicity-edited 1H–13C HSQC (Heteronuclear Single Quantum Coherence) establish a ratio of 3:2:1 for CH, CH2, and CH3, respectively. Further analysis of 2-D 1H COSY (Correlation Spectroscopy) and 2-D 1H-13C HMBC (Heteronuclear Multiple-Bond Correlation spectroscopy) spectra led to the NMR assignments summarized in Table 3[link]. A selective HMBC focusing on the C2/C4 region was recorded for unambiguous assignments of multiple-bond 1H–13C correlations related to these two carbons. These details together with the 2-D 1H–15N HMBC, which reveals stronger H2/N9 and H4/N9 cross-peaks than H1/N9, clearly establish a symmetric three-ring mol­ecular structure, as shown in Fig. 3[link], in full agreement with the crystal structure (Fig. 1[link]).

Table 3
1H and 13C NMR spectroscopic data for 1 recorded in D2O at 298K

Assignments 13C (ppm) 1H (ppm) Couplings (Hz)
C1/H1 146.25 8.99 3J(H1H2) 6.4
C2/H2 131.70 8.14 4J(H2H4) 1.4
C3 162.63    
C4/H4 131.66 8.07  
C5 142.78    
C6/H6A,H6B 58.26 H6A,6B 4.73, 4.03 2J(H6aH6B) 14.5, 3J(H6AH7A) 6.1, 3J(H6BH7B) 11.3
C7/H7A,H7B 26.72 H7A,7B 2.35, 2.05 2J(H7AH7B) 11.1
C8/H8 21.62 2.68  
N9 208.5    
The errors were estimated to be ±0.02ppm, ± 0.002ppm, and ±0.3Hz, respectively, for the 13C chemical shifts, 1H chemical shifts, and J coupling constants.

The stereospecific assignment of the methyl­ene protons was achieved by a systematic recording of 1-D selective NOESY (Nuclear Overhauser Effect Spectroscopy) and COSY spectra. A stronger NOE was observed between the proton at 4.73 ppm and H1, and thus this resonance was assigned to H6A while the geminal one at 4.03 ppm to H6B. The 1-D selective homonuclear decoupling 1H NMR spectra led to the extraction of J-coupling constants between these methyl­ene protons (Table 3[link]). A large 3J coupling exists between H6B and H7B (11.3 Hz), followed by a sizable 3J coupling between H6A and H7A (6.1 Hz). As a result of the complexity of the spectra, the 3J(H6AH7B) and 3J(H6BH7A) could not be determined, but were estimated to be less than 2 Hz. Also, the 11.1 Hz coupling between H7A and H7B was tentatively assigned to the geminal coupling rather than the one across the C7–C7′ bond.

All NMR spectra were recorded on a Bruker Ascend 700 MHz spectrometer equipped with a TXO cryoprobe at 298 K. Spectra were indirectly referenced to the deuterium lock frequency, set to 4.7 ppm.

6. Synthesis and crystallization

The starting materials were standard commercial samples of 95-98% purity. 4,4′-Dimethyl-2,2′-dipyridyl (0.92 g, 5 mmol) and 1,4-di­bromo­butane (0.6 mL, 1.08g, 5 mmol) were added to a mixture of 5 mL each of xylene (mixed isomers, b.p. ca 413 K) and nitro­benzene (b.p. 483 K). The mixture was refluxed for about 5 h, during which time a heavy precipitate formed. After cooling, the crude material was filtered and washed with acetone to yield 1.1 g of a tan-colored powder. Paper electrophoresis of this material at pH 7.5 showed (via UV) a small amount of starting material at Rp ca zero and product at Rp −2.2 (Rp is movement relative to picric acid). Crystallization from methanol–acetone gave 0.5–0.6 g (ca 50%) of reddish crystals, m.p. 528–530 K [lit. 528–533 K; Spotswood & Tanzer (1967[Spotswood, T. M. & Tanzer, C. I. (1967). Aust. J. Chem. 20, 1213-1225.])], UVmax(water) 271 nm. IR(Nujol): 3456, 3414, 3372, 1632, 1582, 1566, 1514 1312, 1159, 1032, 853 cm−1.

7. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 4[link]. All hydrogen atoms were found in difference-Fourier maps. Those attached to carbon were subsequently included in the refinement using riding models, with constrained distances set to 0.95 Å (Csp2H), 0.98 Å (RCH3), and 0.99 Å (R2CH2). Water hydrogen coordinates were refined, but subject to a restraint on the O—H distances (SHELXL command SADI). Uiso(H) parameters were set to values of either 1.2Ueq or 1.5Ueq (RCH3 only) of the attached atom.

Table 4
Experimental details

Crystal data
Chemical formula C16H20N22+·2(Br)·H2O
Mr 418.17
Crystal system, space group Monoclinic, P21/n
Temperature (K) 90
a, b, c (Å) 7.6402 (2), 13.7578 (3), 16.7691 (3)
β (°) 101.162 (1)
V3) 1729.30 (7)
Z 4
Radiation type Mo Kα
μ (mm−1) 4.69
Crystal size (mm) 0.16 × 0.12 × 0.07
 
Data collection
Diffractometer Bruker D8 Venture dual source
Absorption correction Multi-scan (SADABS; Krause et al., 2015[Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3-10.])
Tmin, Tmax 0.562, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections 26025, 3959, 3527
Rint 0.029
(sin θ/λ)max−1) 0.650
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.020, 0.043, 1.06
No. of reflections 3959
No. of parameters 198
No. of restraints 1
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.38, −0.38
Computer programs: APEX3 (Bruker, 2016[Bruker (2016). APEX3 Bruker AXS Inc., Madison, Wisconsin, USA.]), SHELXT (Sheldrick, 2015a[Sheldrick, G. M. (2015a). Acta Cryst. A71, 3-8.]), SHELXL2018/3 (Sheldrick, 2015b[Sheldrick, G. M. (2015b). Acta Cryst. C71, 3-8.]), XP in SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]), SHELX (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]), CIFFIX (Parkin, 2013[Parkin, S. (2013). CIFFIX, https://xray.uky.edu/Resources/scripts/ciffix]), and publCIF (Westrip, 2010[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]).

Supporting information


Computing details top

Data collection: APEX3 (Bruker, 2016); cell refinement: APEX3 (Bruker, 2016); data reduction: APEX3 (Bruker, 2016); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018/3 (Sheldrick, 2015b); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELX (Sheldrick, 2008), CIFFIX (Parkin, 2013), and publCIF (Westrip, 2010).

4,15-Dimethyl-7,12-diazoniatricyclo[10.4.0.02,7]hexadeca-1(12),2,4,6,13,15-hexaene dibromide monohydrate top
Crystal data top
C16H20N22+·2(Br)·H2OF(000) = 840
Mr = 418.17Dx = 1.606 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 7.6402 (2) ÅCell parameters from 9914 reflections
b = 13.7578 (3) Åθ = 2.8–27.5°
c = 16.7691 (3) ŵ = 4.69 mm1
β = 101.162 (1)°T = 90 K
V = 1729.30 (7) Å3Irregular shard, pink
Z = 40.16 × 0.12 × 0.07 mm
Data collection top
Bruker D8 Venture dual source
diffractometer
3959 independent reflections
Radiation source: microsource3527 reflections with I > 2σ(I)
Detector resolution: 7.41 pixels mm-1Rint = 0.029
φ and ω scansθmax = 27.5°, θmin = 2.5°
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
h = 99
Tmin = 0.562, Tmax = 0.746k = 1717
26025 measured reflectionsl = 2121
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: mixed
wR(F2) = 0.043H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0121P)2 + 1.4994P]
where P = (Fo2 + 2Fc2)/3
3959 reflections(Δ/σ)max = 0.002
198 parametersΔρmax = 0.38 e Å3
1 restraintΔρmin = 0.38 e Å3
Special details top

Experimental. The crystal was mounted using polyisobutene oil on the tip of a fine glass fibre, which was fastened in a copper mounting pin with electrical solder. It was placed directly into the cold gas stream of a liquid-nitrogen based cryostat (Hope, 1994; Parkin & Hope, 1998).

Diffraction data were collected with the crystal at 90K, which is standard practice in this laboratory for the majority of flash-cooled crystals.

Geometry. All s.u.s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.s are taken into account individually in the estimation of s.u.s in distances, angles and torsion angles; correlations between s.u.s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.s is used for estimating s.u.s involving l.s. planes.

Refinement. Refinement progress was checked using Platon (Spek, 2009) and by an R-tensor (Parkin, 2000). The final model was further checked with the IUCr utility checkCIF.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Br10.38758 (2)0.69802 (2)0.11426 (2)0.01809 (5)
Br20.09621 (2)0.58825 (2)0.34885 (2)0.01872 (5)
N10.54040 (19)0.38619 (10)0.23392 (9)0.0157 (3)
C10.5310 (2)0.34004 (13)0.16231 (11)0.0193 (4)
H10.4700420.2796320.1536650.023*
C20.6074 (2)0.37819 (13)0.10161 (11)0.0190 (4)
H20.5987130.3441450.0517170.023*
C30.6973 (2)0.46646 (13)0.1128 (1)0.0164 (3)
C40.7082 (2)0.51161 (13)0.18795 (10)0.0159 (3)
H40.7711860.5712650.1982310.019*
C50.6300 (2)0.47175 (12)0.24753 (10)0.0140 (3)
C60.4467 (2)0.34092 (13)0.29478 (11)0.0188 (4)
H6A0.3372850.3079190.2661890.023*
H6B0.4108540.3922470.3297620.023*
C70.5666 (2)0.26732 (13)0.34768 (12)0.0215 (4)
H7B0.4893150.2195450.3683810.026*
H7A0.6353240.2315720.3127500.026*
C80.7795 (3)0.51217 (14)0.04805 (11)0.0232 (4)
H8A0.7505940.4733880.0017830.035*
H8B0.9093260.5149300.0661780.035*
H8C0.7326110.5781630.0372980.035*
N1'0.72247 (18)0.4864 (1)0.39609 (8)0.0136 (3)
C1'0.7337 (2)0.53707 (13)0.46545 (10)0.0172 (4)
H1'0.7927820.5089160.5151490.021*
C2'0.6619 (2)0.62861 (13)0.46625 (10)0.0170 (3)
H2'0.6737620.6633890.5159550.020*
C3'0.5719 (2)0.67031 (13)0.39448 (11)0.0161 (3)
C4'0.5608 (2)0.61627 (12)0.32318 (10)0.0154 (3)
H4'0.5005900.6426720.2729670.018*
C5'0.6360 (2)0.52515 (12)0.32479 (10)0.0135 (3)
C6'0.8162 (2)0.39082 (12)0.40077 (11)0.0169 (4)
H6A'0.9254330.3937840.4434920.020*
H6B'0.8525670.3775160.3482900.020*
C7'0.6976 (2)0.30844 (13)0.41992 (11)0.0198 (4)
H7A'0.6291200.3321380.4604490.024*
H7B'0.7752370.2548770.4455110.024*
C8'0.4859 (2)0.76805 (13)0.39343 (12)0.0210 (4)
H8A'0.5003840.8032710.3443340.031*
H8B'0.5422760.8049080.4415970.031*
H8C'0.3585090.7600370.3936890.031*
O1W0.1964 (2)0.49717 (11)0.17678 (9)0.0297 (3)
H1W0.240 (3)0.5445 (16)0.1598 (16)0.044*
H2W0.168 (3)0.5155 (19)0.2183 (13)0.044*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Br10.01962 (9)0.02036 (9)0.01455 (8)0.00295 (7)0.00397 (6)0.00357 (7)
Br20.01603 (9)0.01993 (9)0.01935 (9)0.00218 (7)0.00129 (6)0.00533 (7)
N10.0134 (7)0.0157 (7)0.0178 (7)0.0010 (6)0.0022 (6)0.0013 (6)
C10.0155 (8)0.0185 (9)0.0229 (9)0.0014 (7)0.0012 (7)0.0065 (7)
C20.0166 (8)0.0215 (9)0.0181 (8)0.0020 (7)0.0012 (7)0.0056 (7)
C30.0146 (8)0.0189 (9)0.0153 (8)0.0046 (7)0.0020 (6)0.0001 (7)
C40.0158 (8)0.0140 (8)0.0173 (8)0.0006 (6)0.0017 (6)0.0005 (7)
C50.0110 (7)0.0144 (8)0.0157 (8)0.0020 (6)0.0004 (6)0.0005 (7)
C60.0147 (8)0.0205 (9)0.0220 (9)0.0043 (7)0.0054 (7)0.0003 (7)
C70.0199 (9)0.0166 (9)0.0288 (10)0.0027 (7)0.0064 (8)0.0033 (8)
C80.028 (1)0.0254 (10)0.0170 (8)0.0006 (8)0.0064 (7)0.0000 (8)
N1'0.0117 (7)0.0138 (7)0.0148 (7)0.0000 (5)0.0018 (5)0.0018 (6)
C1'0.0135 (8)0.0234 (9)0.0138 (8)0.0030 (7)0.0005 (6)0.0008 (7)
C2'0.0153 (8)0.0218 (9)0.0142 (8)0.0034 (7)0.0037 (6)0.0048 (7)
C3'0.0111 (8)0.0164 (8)0.0213 (9)0.0035 (6)0.0045 (7)0.0017 (7)
C4'0.0130 (8)0.0175 (8)0.0153 (8)0.0009 (6)0.0017 (6)0.0013 (7)
C5'0.0110 (7)0.0151 (8)0.0143 (8)0.0025 (6)0.0021 (6)0.0002 (7)
C6'0.0125 (8)0.0157 (8)0.0213 (9)0.0027 (6)0.0006 (7)0.0032 (7)
C7'0.0164 (8)0.0184 (9)0.0246 (9)0.0016 (7)0.0044 (7)0.0068 (7)
C8'0.0194 (9)0.0172 (9)0.0266 (9)0.0003 (7)0.0053 (7)0.0036 (8)
O1W0.0309 (8)0.0252 (8)0.0342 (8)0.0016 (6)0.0096 (6)0.0014 (7)
Geometric parameters (Å, º) top
N1—C11.348 (2)N1'—C1'1.344 (2)
N1—C51.359 (2)N1'—C5'1.358 (2)
N1—C61.491 (2)N1'—C6'1.492 (2)
C1—C21.372 (3)C1'—C2'1.375 (2)
C1—H10.9500C1'—H1'0.9500
C2—C31.390 (2)C2'—C3'1.389 (2)
C2—H20.9500C2'—H2'0.9500
C3—C41.393 (2)C3'—C4'1.396 (2)
C3—C81.494 (2)C3'—C8'1.495 (2)
C4—C51.374 (2)C4'—C5'1.377 (2)
C4—H40.9500C4'—H4'0.9500
C5—C5'1.482 (2)C6'—C7'1.523 (2)
C6—C71.528 (3)C6'—H6A'0.9900
C6—H6A0.9900C6'—H6B'0.9900
C6—H6B0.9900C7'—H7A'0.9900
C7—C7'1.523 (3)C7'—H7B'0.9900
C7—H7B0.9900C8'—H8A'0.9800
C7—H7A0.9900C8'—H8B'0.9800
C8—H8A0.9800C8'—H8C'0.9800
C8—H8B0.9800O1W—H1W0.809 (19)
C8—H8C0.9800O1W—H2W0.807 (19)
C1—N1—C5119.74 (15)C1'—N1'—C6'117.50 (14)
C1—N1—C6117.59 (15)C5'—N1'—C6'122.62 (14)
C5—N1—C6122.66 (14)N1'—C1'—C2'121.64 (16)
N1—C1—C2121.59 (17)N1'—C1'—H1'119.2
N1—C1—H1119.2C2'—C1'—H1'119.2
C2—C1—H1119.2C1'—C2'—C3'120.09 (16)
C1—C2—C3120.29 (16)C1'—C2'—H2'120.0
C1—C2—H2119.9C3'—C2'—H2'120.0
C3—C2—H2119.9C2'—C3'—C4'117.37 (16)
C2—C3—C4116.94 (16)C2'—C3'—C8'121.61 (16)
C2—C3—C8122.41 (16)C4'—C3'—C8'121.00 (16)
C4—C3—C8120.65 (16)C5'—C4'—C3'120.79 (16)
C5—C4—C3121.45 (16)C5'—C4'—H4'119.6
C5—C4—H4119.3C3'—C4'—H4'119.6
C3—C4—H4119.3N1'—C5'—C4'120.31 (15)
N1—C5—C4119.97 (15)N1'—C5'—C5120.15 (15)
N1—C5—C5'120.37 (15)C4'—C5'—C5119.46 (15)
C4—C5—C5'119.58 (15)N1'—C6'—C7'111.60 (14)
N1—C6—C7111.16 (14)N1'—C6'—H6A'109.3
N1—C6—H6A109.4C7'—C6'—H6A'109.3
C7—C6—H6A109.4N1'—C6'—H6B'109.3
N1—C6—H6B109.4C7'—C6'—H6B'109.3
C7—C6—H6B109.4H6A'—C6'—H6B'108.0
H6A—C6—H6B108.0C6'—C7'—C7115.78 (15)
C7'—C7—C6116.31 (15)C6'—C7'—H7A'108.3
C7'—C7—H7B108.2C7—C7'—H7A'108.3
C6—C7—H7B108.2C6'—C7'—H7B'108.3
C7'—C7—H7A108.2C7—C7'—H7B'108.3
C6—C7—H7A108.2H7A'—C7'—H7B'107.4
H7B—C7—H7A107.4C3'—C8'—H8A'109.5
C3—C8—H8A109.5C3'—C8'—H8B'109.5
C3—C8—H8B109.5H8A'—C8'—H8B'109.5
H8A—C8—H8B109.5C3'—C8'—H8C'109.5
C3—C8—H8C109.5H8A'—C8'—H8C'109.5
H8A—C8—H8C109.5H8B'—C8'—H8C'109.5
H8B—C8—H8C109.5H1W—O1W—H2W104 (3)
C1'—N1'—C5'119.79 (15)
C5—N1—C1—C21.2 (3)C1'—C2'—C3'—C4'0.8 (2)
C6—N1—C1—C2177.51 (16)C1'—C2'—C3'—C8'177.56 (16)
N1—C1—C2—C30.0 (3)C2'—C3'—C4'—C5'0.2 (2)
C1—C2—C3—C41.3 (2)C8'—C3'—C4'—C5'178.18 (16)
C1—C2—C3—C8178.70 (17)C1'—N1'—C5'—C4'0.4 (2)
C2—C3—C4—C51.5 (2)C6'—N1'—C5'—C4'176.07 (15)
C8—C3—C4—C5178.50 (16)C1'—N1'—C5'—C5177.22 (15)
C1—N1—C5—C41.0 (2)C6'—N1'—C5'—C50.8 (2)
C6—N1—C5—C4177.65 (15)C3'—C4'—C5'—N1'0.0 (2)
C1—N1—C5—C5'177.79 (15)C3'—C4'—C5'—C5176.85 (15)
C6—N1—C5—C5'0.8 (2)N1—C5—C5'—N1'66.1 (2)
C3—C4—C5—N10.4 (3)C4—C5—C5'—N1'117.12 (18)
C3—C4—C5—C5'176.45 (15)N1—C5—C5'—C4'117.09 (18)
C1—N1—C6—C787.25 (19)C4—C5—C5'—C4'59.7 (2)
C5—N1—C6—C794.09 (19)C1'—N1'—C6'—C7'88.23 (18)
N1—C6—C7—C7'83.16 (19)C5'—N1'—C6'—C7'95.23 (19)
C5'—N1'—C1'—C2'1.0 (2)N1'—C6'—C7'—C782.48 (19)
C6'—N1'—C1'—C2'175.61 (15)C6—C7—C7'—C6'52.2 (2)
N1'—C1'—C2'—C3'1.3 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C1—H1···Br2i0.952.683.5929 (18)161
C2—H2···Br1ii0.952.863.7762 (18)161
C7—H7B···Br1i0.992.963.7700 (19)139
C1—H1···Br2iii0.952.643.5765 (17)170
C2—H2···Br1iv0.952.823.6285 (17)143
C4—H4···Br10.952.743.6735 (17)167
C7—H7B···Br1v0.993.043.6581 (18)122
O1W—H1W···Br10.81 (2)2.58 (2)3.3856 (15)177 (3)
O1W—H2W···Br20.81 (2)2.56 (2)3.3670 (15)175 (3)
Symmetry codes: (i) x+1/2, y1/2, z+1/2; (ii) x+1, y+1, z; (iii) x+1, y+1, z+1; (iv) x+1/2, y+3/2, z+1/2; (v) x+3/2, y1/2, z+1/2.
Percentage of atom···atom contacts between asymmetric units in 1 top
H···H57.0
H···Br26.2
H···C9.0
H···O4.7
C···Br1.7
N···Br1.1
C···C0.4
N···N0.0
O···O0.0
Br···Br0.0
Contact percentages were derived from Hirshfeld-surface fingerprint plots (Spackman & McKinnon, 2002; McKinnon et al., 2004) using CrystalExplorer 17.5 (Turner et al., 2017). Reciprocal contacts are included in the totals. The sum of all percentages in the table is 100.1% due to accumulation of rounding errors.
1H and 13C NMR spectroscopic data for 1 recorded in D2O at 298K top
Assignments13C (ppm)1H (ppm)Couplings (Hz)
C1/H1146.258.993J(H1H2) 6.4
C2/H2131.708.144J(H2H4) 1.4
C3162.63
C4/H4131.668.07
C5142.78
C6/H6A,H6B58.26H6A,6B 4.73, 4.032J(H6aH6B) 14.5, 3J(H6AH7A) 6.1, 3J(H6BH7B) 11.3
C7/H7A,H7B26.72H7A,7B 2.35, 2.052J(H7AH7B) 11.1
C8/H821.622.68
N9208.5
The errors were estimated to be ±0.02ppm, ± 0.002ppm, and ±0.3Hz, respectively, for the 13C chemical shifts, 1H chemical shifts, and J coupling constants.
 

Acknowledgements

The D8 Venture diffractometer was funded by the NSF (MRI CHE1625732), and by the University of Kentucky.

Funding information

Funding for this research was provided by: NSF (grant No. CHE1625732 to Sean Parkin).

References

First citationAbraham, M. H. & Grellier, P. L. (1976). J. Chem. Soc. Perkin II 1735–1741.  Google Scholar
First citationAlkorta, I., Elguero, J., Roussel, C., Vanthunyne, N. & Piras, P. (2012). Adv. Heterocycl. Chem., 105, 1–188.  CrossRef CAS Google Scholar
First citationAnderson, R. F. & Patel, K. B. (1984). J. Chem. Soc. Faraday Trans. 1, 80, 2693–2702.  Google Scholar
First citationBondi, A. (1964). J. Phys. Chem. 68, 441–451.  CrossRef CAS Web of Science Google Scholar
First citationBruker (2016). APEX3 Bruker AXS Inc., Madison, Wisconsin, USA.  Google Scholar
First citationCalder, I. C., Spotswood, M. & Tanzer, C. I. (1967). Aust. J. Chem. 20, 1195–1212.  CrossRef CAS Google Scholar
First citationDerry, J. E. & Hamor, T. A. (1969). Nature, 221, 464–465.  CSD CrossRef CAS Google Scholar
First citationDerry, J. E. & Hamor, T. A. (1970). J. Chem. Soc. D, pp. 1284–1286.  Google Scholar
First citationEliel, E. L., Wilen, S. H. & Mander, L. N. (1994). Stereochemistry of Organic Compounds. New York: Wiley.  Google Scholar
First citationGroom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179.  Web of Science CrossRef IUCr Journals Google Scholar
First citationHofbauer, M., Möbius, M., Knoch, F. & Benedix, R. (1996). Inorg. Chim. Acta, 247, 147–154.  CSD CrossRef CAS Web of Science Google Scholar
First citationHomer, R. F. & Tomlinson, T. E. (1960). J. Chem. Soc. pp. 2498–2503.  CrossRef Google Scholar
First citationKnoch, F., Schmauch, G. & Kisch, H. (1995). Z. Kristallogr., 210, 76–77.  CAS Google Scholar
First citationKrause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3–10.  Web of Science CSD CrossRef ICSD CAS IUCr Journals Google Scholar
First citationMancinelli, M., Bencivenni, G., Pecorari, D. & Mazzanti, A. (2020). Eur. J. Org. Chem. 2020, 4070–4086.  CrossRef Google Scholar
First citationMcKinnon, J. J., Spackman, M. A. & Mitchell, A. S. (2004). Acta Cryst. B60, 627–668.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationMenschutkin, N. (1890). Z. Physik. Chem. 5, 589–600.  Google Scholar
First citationParkin, S. (2013). CIFFIX, https://xray.uky.edu/Resources/scripts/ciffix  Google Scholar
First citationSanchez, M. L. K., Wu, C. H., Adams, M. W. W. & Dyer, R. B. (2019). Chem. Commun. 55, 5579–5582.  CSD CrossRef CAS Google Scholar
First citationSchmauch, G., Knoch, F. & Kisch, H. (1995). Chem. Ber. 128, 303–307.  CSD CrossRef CAS Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
First citationSheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
First citationSpackman, M. A. & McKinnon, J. J. (2002). CrystEngComm, 4, 378–392.  Web of Science CrossRef CAS Google Scholar
First citationSpotswood, T. M. & Tanzer, C. I. (1967). Aust. J. Chem. 20, 1213–1225.  CrossRef CAS Google Scholar
First citationSullivan, P. D. & Williams, M. L. (1976). J. Am. Chem. Soc. 98, 1711–1716.  CSD CrossRef CAS Google Scholar
First citationTalele, H. R., Koval, D., Severa, L., Reyes-Gutiérrez, P. E., Císařová, I., Sázelová, P., Šaman, D., Bednárová, L., Kašička, V. & Teplý, F. (2018). Chem. Eur. J. 24, 7601–7604.  CrossRef CAS PubMed Google Scholar
First citationThummel, R. P., Lefoulon, F. & Mahadevan, R. (1985). J. Org. Chem. 50, 3824–3828.  CrossRef CAS Google Scholar
First citationTurner, M.J., Mckinnon, J.J., Wolff, S.K., Grimwood, D.J., Spackman, P.R., Jayatilaka, D. & Spackman, M.A. (2017). Crystal Explorer 17.5. The University of Western Australia.  Google Scholar
First citationWestrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationZoltewicz, J. A. & Jacobson, H. L. (1978). J. Org. Chem. 43, 19–23.  CrossRef CAS Google Scholar

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