research communications
Synthesis and Δ/Λ)-tris(ethylenediamine)cobalt(III) trichloride hemi(hexaaquasodium chloride)
of racemic (aDepartment of Chemistry, Harvey Mudd College, 301 Platt Avenue, Claremont, CA 91711-5990, USA, and bRigaku Americas Corporation, 9009 New Trails Dr., The Woodlands, TX 77381, USA
*Correspondence e-mail: adam_johnson@hmc.edu
The synthesis and 2H8N2)3]Cl3.{[Na(H2O)6]Cl}0.5, are reported. The trivalent cobalt atom, which resides on a crystallographic threefold axis, is chelated by a single ethylene diamine (en) ligand and yields the tris-chelate [Co(en)3]3+ cation with distorted octahedral geometry after the application of crystal symmetry. The sodium cation (site symmetry ), has a single water molecule bound to it in the and yields a distorted, octahedrally coordinated hydrated [Na(H2O)6]+ cation after the application of symmetry. One of the chloride ions lies on a general position and the other has An extensive array of C—H⋯O, N—H⋯Cl and O—H⋯Cl hydrogen bonds exists between the ethylene diamine ligands, the water molecules of hydration, and the anions present, thereby furnishing solid-state stability.
of the title [Co(CKeywords: crystal structure; racemate; enantiomer; ethylene diamine.
CCDC reference: 2042981
1. Chemical context
The coordination complex-cation tris-ethylenediamine cobalt(III), [Co(en)3]3+, was influential in Werner's development of the structure of transition-metal complexes as it could be resolved into its two enantiomers by selective crystallization using tartrate anions, thus helping to demonstrate the octahedral geometry of the metal ion (Werner, 1912). As such, the synthesis of members of this family of complexes is a common undergraduate laboratory experiment (Work & McReynolds, 1946; Broomhead et al., 1960; Girolami et al., 1999; McClellan & Cass, 2015).
The synthesis and structural characterization of many members of this family of complexes, both racemic and resolved, have been undertaken over the years. In all cases, the [Co(en)3]3+ complex cation was found to have trigonally distorted octahedral symmetry, as expected, and the structures usually have significant hydrogen-bonding interactions involving the ethylene diamine ligands, the water molecules of hydration, and the anions present.
2. Structural commentary
The title compound crystallizes in the centrosymmetric trigonal Pc1 (Fig. 1). The consists of a trivalent cobalt atom residing on a threefold axis chelated by an ethylene diamine (en; C2H8N2) ligand. Two Cl anions, one occupying a general position and the other lying on a axis are also present. One Na cation, also positioned on a axis, with a water molecule (general position) bound to it are also observed. After application of crystal symmetry, the [Co(en)3]3+ and [Na(H2O)6]+ cationic complexes that result each adopt distorted octahedral geometries.
Within the chelating en ligand, given the sp3-hybridization of the C atoms and an expected tetrahedral coordination environment around those C atoms, bond angles around each should be near the expected 109.5°. The values obtained from the [minimum = 106.33 (15)°; maximum = 111.2 (12)°] indicate a degree of distortion.
Solid-state integrity is maintained by an array of C—H⋯O, N—H⋯Cl and O—H⋯Cl hydrogen bonds between the [Co(en)3]3+ and [Na(H2O)6]+cations and the chloride anions. Unlike the structure of enantiopure Λ-[tris(ethylenediamine)cobalt(III) trichloride]·0.5NaCl·3H2O (Nakatsu et al., 1957; Farrugia et al., 2000), where the sodium cations and chloride anions showed signs of disorder, no features suggestive of disorder are observed in the structure of the racemate.
3. Supramolecular features
The en-chelated, trivalent cobalt atom in the title compound lies on a threefold axis housed within the (021) plane. As a result of crystal symmetry, the full [Co(en)3]3+ cation is generated and shows both the Λδδδ and the Δλλλ configurations with distorted octahedral geometry (Jensen, 1970). By virtue of its residing on a threefold axis, the net +1 charge that results from the Co atom is balanced by a fully occupied Cl anion occupying a general position. Typically, changes in conformation of the en ligand can be attributed to hydrogen bonding; however, all en conformations in both Co(en)3 and Cr(en)3 cations demonstrate similar energies (Veal & Hodgson, 1972; Enemark et al., 1970; Raymond et al., 1968a,b; Raymond & Ibers, 1968). Analogous to the many structures encompassing the [Co(en)3]3+ cation, hydrogen-bonded arrays are prevalent in the solid-state structure between the en ligands and both water molecules and chloride anions (Table 1).
It is notable that Cl2 accepts six, symmetry-equivalent O1—H1E⋯Cl2 hydrogen bonds (Table 1) and forms a distorted Cl(H2O)6 octahedron. Along the c-axis, the orientation of the sodium and Cl2 octahedra with respect to one another forms a herringbone-type pattern when looking into the ac plane (Fig. 2). Collectively, the symmetry elements within the solid-state structure of the racemate make it an excellent illustration of the p6mm two-dimensional when looking towards the ab plane (Fig. 3).
4. Database survey
The structure of racemic [Co(en)3]Cl3 was reported to have the trigonal Pc1; however, no additional structural details were reported (Dingle & Ballhausen, 1967). This salt was later crystallized as the non-stoichiometric hydrate (2.8 water molecules per cobalt center) with long chains of hydrogen-bonded water molecules that precluded interactions between the incorporated water molecules and the ethylene diamine ligands (Whuler et al., 1975). This same salt was later crystallized as the tetrahydrate and included a one-dimensional water chain perpendicular to the [001] direction. The solid was vacuum dried to form void channels that could incorporate guest molecules (Takamizawa et al., 2008).
Like racemic [Co(en)3]Cl3, other chemically-similar salts have been crystallized that demonstrate hydrogen-bonding arrays involving the ethylenediamine ligands, interstitial water molecules, and the counter-ions. These included the Λ-enantiomer of the monohydrate Cl and I salts, which crystallize in the tetragonal P43212, in 1969 and 2001, respectively (Iwata et al., 1969; Matsuki et al., 2001). The structure of the bromide salt of the Δ-enantiomer, Δ-[Co(en)3]Br3·H2O, was carried out in 1962, though the could not be determined by at that time (Nakatsu, 1962). The structure of the right-handed helical enantiomer, Δ-[Co(en)3]I3·H2O was finally reported in 2019 and crystallizes in the orthorhombic P212121 (Grant et al., 2019).
More complex counter-ions have also been utilized in racemic and purely enantiomeric salts with [Co(en)3]3+. The structures of the nitrate salts, obtained both as a racemic crystal in the Pca21 (Oldenbourg, 1998) and as the Λ-enantiomer in the P41212 (Witiak et al., 1972) were reported. Racemic crystals [Co(en)3][Cr(CN)5(NO)]·2H2O (Enemark et al., 1970) and [Co(en)3]2[CdCl6]Cl2·2H2O (Veal & Hodgson, 1972) were also reported, which crystallize in the monoclinic P21/c. The complex racemic hydrogen phosphate salt [Co(en)3]2[HPO4]3·9H2O was determined to exist in the orthorhombic Pnma (Raymond & Duesler, 1971). In this latter-most structure, it has been proposed that the significant hydrogen bonding involving the en ligands, the counter-ion and the water molecules of hydration is directly responsible for this material's spectrum (Raymond & Duesler, 1971).
As the student laboratory preparation usually involves the synthesis of the racemic double salt [Co(en)3]·Cl3·0.5NaCl·3H2O (McClellan & Cass, 2015; Girolami et al., 1999), we were surprised to not find its structure reported in the Cambridge Structural Database. As mentioned previously, the structure of the Λ-enantiomer of the complex was first reported in 1957 (Nakatsu et al., 1957) and later redetermined in 2000 (Farrugia et al., 2000).
5. Synthesis and crystallization
The title complex 1 was prepared following the method of Girolami (Girolami et al., 1999) and later modified by Cass (McClellan & Cass, 2015). Into a 100 ml beaker, CoCl2·6H2O (6.0 g, 25 mmol, finely ground using a mortar and pestle) was dissolved in water (20 mL) with stirring. Upon addition of ethylenediamine dihydrochloride (13.3 g, 100 mmol), the solution became pink and cloudy. Sodium hydroxide pellets (6.75 g, 170 mmol) were next added slowly while the solution stirred. Each pellet initially turned blue and then completely dissolved within a few minutes. The pH was then tested using litmus paper and determined to be 8. Hydrochloric acid (6 M) was added dropwise until the pH was approximately 7–7.5, which changed the color of the solution to rusty orange. A hydrogen peroxide solution (20 ml of 3% solution) was added dropwise over a couple of minutes and the solution became dark orange. The solution was slowly brought to a boil while stirring. The stir bar was removed and the beaker placed into an ice bath for 30 minutes to cool. The crystals were collected through filtration and washed with 95% ethanol (50 ml) and subsequently diethyl ether (20 ml) to yield a bright-orange powder (6.754 g, 18.6 mmol, 74.5%). Large single crystals (ca 3 × 3 ×3 mm) of 1 were grown by slow evaporation from water and cut to size using a razor blade.
6. Refinement
Crystal data, data collection and structure 1 are summarized in Table 2. With the exception of atom H1E, which was constrained to ride on the water O atom (O1), all other H atoms were located in the difference-Fourier map and freely refined with 0.91 < C—H < 0.99 Å, 0.81 < N—H < 0.84 Å, and O—H = 0.89 Å.
details for
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Supporting information
CCDC reference: 2042981
https://doi.org/10.1107/S2056989021009336/hb7980sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989021009336/hb7980Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989021009336/hb7980Isup3.cml
Data collection: CrysAlis PRO (Rigaku OD, 2020); cell
CrysAlis PRO (Rigaku OD, 2020); data reduction: CrysAlis PRO (Rigaku OD, 2020); program(s) used to solve structure: ShelXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).[Co(C2H8N2)3]Cl3·{[Na(H2O)6]Cl}0.5 | Dx = 1.616 Mg m−3 |
Mr = 428.86 | Mo Kα radiation, λ = 0.71073 Å |
Trigonal, P3c1 | Cell parameters from 30262 reflections |
a = 11.4290 (2) Å | θ = 2.1–30.7° |
c = 15.5815 (2) Å | µ = 1.53 mm−1 |
V = 1762.61 (7) Å3 | T = 293 K |
Z = 4 | Block, clear light orange |
F(000) = 896 | 0.39 × 0.29 × 0.22 mm |
XtaLAB Mini II diffractometer | 1860 independent reflections |
Radiation source: fine-focus sealed X-ray tube, Rigaku (Mo) X-ray Source | 1643 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 30.9°, θmin = 2.6° |
ω scans | h = −16→16 |
Absorption correction: analytical (CrysalisPro; Rigaku OD, 2020) | k = −16→16 |
Tmin = 0.664, Tmax = 0.794 | l = −22→22 |
65362 measured reflections |
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.072 | w = 1/[σ2(Fo2) + (0.0373P)2 + 0.9272P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.001 |
1860 reflections | Δρmax = 0.47 e Å−3 |
99 parameters | Δρmin = −0.76 e Å−3 |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.3333 | 0.6667 | 0.88151 (2) | 0.01756 (9) | |
Cl1 | 0.10242 (4) | 0.61265 (4) | 0.62517 (2) | 0.03423 (11) | |
Cl2 | 0.0000 | 1.0000 | 0.5000 | 0.0546 (3) | |
Na1 | 0.0000 | 1.0000 | 0.7500 | 0.0543 (5) | |
N1 | 0.29983 (13) | 0.51120 (12) | 0.95321 (8) | 0.0244 (2) | |
N2 | 0.18593 (13) | 0.53380 (13) | 0.80958 (8) | 0.0273 (2) | |
O1 | 0.08849 (18) | 0.88917 (17) | 0.65619 (12) | 0.0592 (4) | |
H1E | 0.0758 | 0.9001 | 0.6015 | 0.089* | |
C1 | 0.17218 (16) | 0.39077 (15) | 0.92577 (10) | 0.0302 (3) | |
C2 | 0.16421 (17) | 0.39746 (16) | 0.82971 (10) | 0.0316 (3) | |
H2C | 0.235 (2) | 0.386 (2) | 0.8014 (13) | 0.036 (5)* | |
H1A | 0.363 (2) | 0.494 (2) | 0.9459 (13) | 0.036 (5)* | |
H1C | 0.171 (2) | 0.310 (2) | 0.9475 (15) | 0.042 (6)* | |
H1D | 0.103 (2) | 0.396 (2) | 0.9513 (13) | 0.033 (5)* | |
H2D | 0.081 (2) | 0.332 (2) | 0.8111 (13) | 0.040 (6)* | |
H2A | 0.114 (2) | 0.533 (2) | 0.8215 (14) | 0.038 (5)* | |
H1B | 0.291 (2) | 0.519 (2) | 1.0044 (14) | 0.038 (5)* | |
H2B | 0.198 (2) | 0.546 (2) | 0.7578 (14) | 0.042 (6)* | |
H1F | 0.105 (4) | 0.824 (4) | 0.639 (2) | 0.096 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.01928 (11) | 0.01928 (11) | 0.01412 (13) | 0.00964 (5) | 0.000 | 0.000 |
Cl1 | 0.03216 (19) | 0.0423 (2) | 0.02759 (18) | 0.01808 (16) | 0.00203 (13) | 0.00448 (14) |
Cl2 | 0.0568 (5) | 0.0568 (5) | 0.0501 (7) | 0.0284 (2) | 0.000 | 0.000 |
Na1 | 0.0515 (7) | 0.0515 (7) | 0.0598 (13) | 0.0258 (4) | 0.000 | 0.000 |
N1 | 0.0287 (6) | 0.0247 (5) | 0.0207 (5) | 0.0141 (5) | −0.0015 (4) | 0.0011 (4) |
N2 | 0.0278 (6) | 0.0296 (6) | 0.0222 (5) | 0.0126 (5) | −0.0053 (4) | −0.0026 (4) |
O1 | 0.0636 (10) | 0.0485 (9) | 0.0674 (10) | 0.0295 (8) | −0.0137 (8) | −0.0076 (8) |
C1 | 0.0318 (7) | 0.0225 (6) | 0.0299 (7) | 0.0088 (5) | 0.0024 (5) | 0.0017 (5) |
C2 | 0.0340 (7) | 0.0246 (6) | 0.0289 (7) | 0.0092 (6) | −0.0045 (6) | −0.0067 (5) |
Co1—N1i | 1.9676 (12) | N1—H1A | 0.84 (2) |
Co1—N1ii | 1.9676 (12) | N1—H1B | 0.81 (2) |
Co1—N1 | 1.9677 (12) | N2—C2 | 1.484 (2) |
Co1—N2i | 1.9601 (12) | N2—H2A | 0.84 (2) |
Co1—N2ii | 1.9601 (12) | N2—H2B | 0.82 (2) |
Co1—N2 | 1.9600 (12) | O1—H1E | 0.8837 |
Na1—O1iii | 2.4586 (19) | O1—H1F | 0.89 (4) |
Na1—O1iv | 2.4586 (19) | C1—C2 | 1.504 (2) |
Na1—O1v | 2.4587 (19) | C1—H1C | 0.97 (2) |
Na1—O1 | 2.4586 (19) | C1—H1D | 0.91 (2) |
Na1—O1vi | 2.4586 (19) | C2—H2C | 0.99 (2) |
Na1—O1vii | 2.4586 (19) | C2—H2D | 0.92 (2) |
N1—C1 | 1.4825 (19) | ||
N1i—Co1—N1ii | 90.94 (5) | O1iii—Na1—O1v | 96.03 (8) |
N1i—Co1—N1 | 90.94 (5) | Co1—N1—H1A | 109.1 (14) |
N1ii—Co1—N1 | 90.94 (5) | Co1—N1—H1B | 115.9 (15) |
N2i—Co1—N1i | 85.48 (5) | C1—N1—Co1 | 109.36 (9) |
N2—Co1—N1ii | 174.50 (5) | C1—N1—H1A | 108.0 (14) |
N2—Co1—N1 | 85.48 (5) | C1—N1—H1B | 105.5 (16) |
N2—Co1—N1i | 93.29 (6) | H1A—N1—H1B | 109 (2) |
N2i—Co1—N1 | 174.50 (5) | Co1—N2—H2A | 109.7 (15) |
N2ii—Co1—N1i | 174.50 (6) | Co1—N2—H2B | 115.3 (15) |
N2ii—Co1—N1 | 93.29 (6) | C2—N2—Co1 | 108.69 (9) |
N2i—Co1—N1ii | 93.29 (6) | C2—N2—H2A | 107.2 (16) |
N2ii—Co1—N1ii | 85.48 (5) | C2—N2—H2B | 108.5 (15) |
N2i—Co1—N2ii | 90.55 (6) | H2A—N2—H2B | 107 (2) |
N2i—Co1—N2 | 90.55 (6) | Na1—O1—H1E | 111.2 |
N2—Co1—N2ii | 90.55 (6) | Na1—O1—H1F | 156 (2) |
O1iv—Na1—O1v | 88.27 (6) | H1E—O1—H1F | 87.3 |
O1iv—Na1—O1 | 96.03 (8) | N1—C1—C2 | 107.24 (12) |
O1—Na1—O1v | 174.05 (8) | N1—C1—H1C | 108.8 (14) |
O1vi—Na1—O1iv | 174.05 (8) | N1—C1—H1D | 107.4 (13) |
O1vi—Na1—O1v | 87.75 (8) | C2—C1—H1C | 115.0 (13) |
O1vii—Na1—O1iv | 88.27 (6) | C2—C1—H1D | 110.8 (13) |
O1vii—Na1—O1 | 87.75 (8) | H1C—C1—H1D | 107.4 (18) |
O1vi—Na1—O1iii | 88.27 (6) | N2—C2—C1 | 106.33 (12) |
O1iii—Na1—O1 | 88.27 (6) | N2—C2—H2C | 109.2 (13) |
O1vii—Na1—O1iii | 174.05 (8) | N2—C2—H2D | 110.3 (13) |
O1vii—Na1—O1v | 88.27 (6) | C1—C2—H2C | 111.2 (12) |
O1iv—Na1—O1iii | 87.75 (9) | C1—C2—H2D | 109.8 (13) |
O1vi—Na1—O1 | 88.27 (6) | H2C—C2—H2D | 110.0 (18) |
O1vi—Na1—O1vii | 96.03 (8) |
Symmetry codes: (i) −x+y, −x+1, z; (ii) −y+1, x−y+1, z; (iii) −y+1, x−y+2, z; (iv) x−y+1, −y+2, −z+3/2; (v) y−1, x+1, −z+3/2; (vi) −x+y−1, −x+1, z; (vii) −x, −x+y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Cl1viii | 0.84 (2) | 2.57 (2) | 3.3586 (13) | 156.7 (18) |
N1—H1B···Cl1ix | 0.81 (2) | 2.75 (2) | 3.4317 (13) | 142.0 (19) |
N2—H2A···Cl1vii | 0.84 (2) | 2.50 (2) | 3.3286 (14) | 172 (2) |
N2—H2B···Cl1 | 0.82 (2) | 2.62 (2) | 3.2925 (13) | 140.6 (19) |
O1—H1E···Cl2 | 0.88 | 2.35 | 3.1354 (18) | 147 |
O1—H1F···Cl1 | 0.89 (4) | 2.41 (4) | 3.2787 (18) | 164 (3) |
C2—H2D···O1x | 0.92 (2) | 2.59 (2) | 3.361 (2) | 142.1 (17) |
Symmetry codes: (vii) −x, −x+y, −z+3/2; (viii) x−y+1, −y+1, −z+3/2; (ix) x, x−y+1, z+1/2; (x) y−1, x, −z+3/2. |
Funding information
Funding for this research was provided by: Harvey Mudd College.
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