research communications
Z)-2-{[(2,4-dimethylphenyl)imino]methyl}-4-methylphenol
and Hirshfeld surface analysis of (aSamsun University, Faculty of Engineering, Department of Fundamental Sciences, 55420, Samsun, Turkey, bAkay Pharma Medicine and Health Products Industries & Trade, 34000, Istanbul, Turkey, cOndokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, 55139, Samsun, Turkey, dOndokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, 55139, Samsun, Turkey, eDepartment of Computer and Electronic Engineering Technology, Sanaa Community College, Sanaa, Yemen, and fDepartment of Electrical and Electronic Engineering, Faculty of Engineering, Ondokuz Mayıs University, 55139, Samsun, Turkey
*Correspondence e-mail: sevgi.kansiz@samsun.edu.tr, eiad.saif@scc.edu.ye
The title compound, C16H17NO, is a Schiff base that exists in the enol–imine tautomeric form and adopts a Z configuration. The molecule is non-planar, with the twisted rings making a dihedral angle of 39.92 (4)°. The intramolecular O—H⋯N hydrogen bond forms an S(6) ring motif. In the crystal, molecules are linked by C—H⋯π interactions and very weak π-π stacking interactions also help to consolidate the crystal packing. A Hirshfeld surface analysis was performed to investigate the contributions of different intermolecular contacts within the supramolecular structure. The major contributions are from H⋯H (65%), C⋯H (19.2%) and O⋯H (6.6%) interactions.
Keywords: crystal structure; Schiff base; enol–imine tautomer; C—H⋯π interactions; Hirshfeld surface analysis.
CCDC reference: 2113562
1. Chemical context
et al., 2020). are in general more stable than the compounds from which they are synthesized (Wadher et al., 2009). Nowadays, the possibility of molecular design is an important key for many research areas such as medicine or agriculture. In this respect, Schiff base formation provides an easy way to design new compounds, and biologically or chemically active compounds can be obtained using this method. As the structures of are generally similar to those of biological molecules, are valuable for understanding biological phenomena. As a result, are used in many studies. Various types of or have been used for their synthesis, but 2-hydroxybenzaldehyde and its derivatives are used especially often (Jeewoth et al., 2000; Mazhar et al., 2020). The basis of such preference is the and stability provided by the hydroxyl group in conjunction with the imine group. with intramolecular hydrogen bonds can exhibit photochromic and thermochromic properties (Elerman et al., 2002). obtained from 2-hydroxybenzaldehyde and its derivatives can also form complexes with various metal ions. The title compound is a Schiff base prepared from 2-hydroxy-5-methylbenzaldehyde.
are well-known organic compounds widely used in many areas. These compounds can be easily synthesized by condensation of a primary aliphatic or aromatic amine with an aldehyde or ketone in different solvent media and they can easily be purified, since the amount of by-products is negligible (Tanak2. Structural commentary
The title compound crystallizes in the phenol–imine tautomeric form with an Z configuration with respect to the imine bond. The contains one molecule (Fig. 1), which is non-planar, two aromatic rings being twisted with respect to each other, subtending a dihedral angle of 39.92 (4)°. The hydroxy and imine groups are involved in a strong intramolecular O1—H1⋯N1 hydrogen bond forming an S(6) ring motif. The C1—O1 [1.353 (2) Å] and C7—N1 [1.282 (2) Å] bond distances indicate their single- and double-bond characters, respectively, being consistent with the phenol–imine tautomeric form.
3. Supramolecular features
In the crystal, molecules are linked by C16—H16A⋯π (C9–C14) interactions (Table 1, Fig. 2), and very weak π–π stacking interactions between the OH-substituted rings (C1–C6) related by the a glide plane [Cg⋯Cg (− + x, y, − z) = 4.0220 (9) Å] lead to additional stabilization of the crystal packing. A view of the crystal packing parallel to the bc plane is shown in Fig. 2.
4. Database survey
A search of the Cambridge Structural Database (CSD, version 5.42, update of May 2021; Groom et al., 2016) for the (Z)-2-{[(2,4-dimethylphenyl)imino]methyl}-4-methylphenol unit, revealed ten hits where this fragment adopts the enol–imine tautomeric form. The imine bond length (N1—C7) in the title compound is the same within standard uncertainties as the corresponding bond lengths in the structures of 2-(diphenylmethyl)-6-[(mesitylimino)methyl]-4-methylphenol (DEHQIS; Zhou et al., 2012), (R)-N,N′-bis(3,5-di-t-butylsalicylidene)-5,5′,6,6′,7,7′,8,8′-octahydro-1,1′-binaphthyl-2,2′-diamine (MIFXAA; Jia et al., 2002), acetonitrile-bis{2-(mesitylcarbonoimidoyl)-6-[(mesitylimino)methyl]-4-methylphenolato}magnesium acetonitrile solvate (QUDZAS; Ghosh et al., 2015), bis{2,4-di-t-butyl-6-[(mesitylimino)methyl]phenolato}tetrahydrofuranmagnesium (QUDZIA; Ghosh et al., 2015) and 2,4-di-t-butyl-6-{[(2,4,6-tri-t-butylphenyl)imino]methyl}phenol (YADZOV; Ma et al., 2016). As for the C1—O1 bond [1.353 (2) Å], its length compares well with 1.352 (2) Å for YADZOV and 1.359 (5) Å for DEHQIS. All other bond dimensions in the title structure agree well with those in previous literature reports. In NUGWES, NUGWIW and NUGWOC (Xu et al., 2009) and in YADZOV (Ma et al., 2016), the lengths of intramolecular O—H⋯N hydrogen bonds are especially short, being within the range 1.81–1.88 Å.
5. Hirshfeld surface analysis
We have performed a Hirshfeld surface analysis and generated the associated two-dimensional fingerprint plots (Spackman & Jayatilaka, 2009) with CrystalExplorer17 (Turner et al., 2017). Hirshfeld surface analysis is an important way of determining the location of atoms with potential to form hydrogen bonds and other intermolecular contacts, and the quantitative ratio of these interactions (Demircioğlu et al., 2019). The Hirshfeld surface was generated using a standard (high) surface resolution with the three-dimensional dnorm surface mapped over a fixed colour scale of −0.1168 (red) to 1.1632 Å (blue) (the fixed colour scale is 1.0201 to 2.4894 Å for the de surface). In Figs. 2 and 3, the red spots on the dnorm and de surfaces represent the C—H⋯Cg interactions. The most important interaction is H⋯H, contributing 65% to the overall crystal packing, which is illustrated in the 2D fingerprint (Fig. 4). Two symmetrical wings on the left and right sides are seen in the fingerprint plot for C⋯H/H⋯C interactions, the second most important contributor to the total Hirshfeld surface (19%). The O⋯H/H⋯O interactions provide a 6.6% contribution to the total Hirshfeld surface. Much weaker C⋯C (5.3%), N⋯H/H⋯N (2.3%) and C⋯O/O⋯C (1.3%) contacts are also present.
6. Synthesis and crystallization
(Z)-2-{[(2,4-dimethylphenyl)imino]methyl}-4-methylphenol was synthesized by condensation of 2-hydroxy-5-methylbenzaldehyde and 2,4-dimethylaniline (Fig. 5). For this purpose, a mixture of a solution containing 2-hydroxy-5-methylbenzaldehyde (0.04 mmol) in ethanol (20 mL) and a solution containing 2,4-dimethylaniline (0.04 mmol) in ethanol (20 mL) was refluxed for 6 h under stirring. The obtained crystalline product was washed with ethanol and dried at room temperature. Single crystals were obtained by slow evaporation of ethanol solution at room temperature.
7. Refinement
Crystal data, data collection and structure . The O-bound H atom was located in a difference-Fourier map and refined with O—H = 0.82 Å, and with Uiso(H) = 1.5Ueq(O). The C-bound H atoms were positioned geometrically and refined using a riding model with C—H = 0.93 and Uiso(H) = 1.2Ueq(C) for sp2-hybridized C atoms and with C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C) for methyl groups.
details are summarized in Table 2Supporting information
CCDC reference: 2113562
https://doi.org/10.1107/S2056989021010215/yk2157sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989021010215/yk2157Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989021010215/yk2157Isup3.cml
Data collection: X-AREA (Stoe & Cie, 2002); cell
X-AREA (Stoe & Cie, 2002); data reduction: X-RED (Stoe & Cie, 2002); program(s) used to solve structure: SHELXT2017/1 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2017/1 (Sheldrick, 2015b); molecular graphics: PLATON (Spek, 2020); software used to prepare material for publication: WinGX (Farrugia, 2012).C16H17NO | Dx = 1.185 Mg m−3 |
Mr = 239.30 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 13620 reflections |
a = 7.6699 (4) Å | θ = 1.4–24.9° |
b = 11.6080 (6) Å | µ = 0.07 mm−1 |
c = 30.1431 (17) Å | T = 296 K |
V = 2683.7 (2) Å3 | Plate, orange |
Z = 8 | 0.68 × 0.48 × 0.18 mm |
F(000) = 1024 |
Stoe IPDS 2 diffractometer | 2213 independent reflections |
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 1451 reflections with I > 2σ(I) |
Detector resolution: 6.67 pixels mm-1 | Rint = 0.081 |
rotation method scans | θmax = 24.5°, θmin = 1.4° |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | h = −8→8 |
Tmin = 0.953, Tmax = 0.990 | k = −13→13 |
14869 measured reflections | l = −34→34 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.042 | w = 1/[σ2(Fo2) + (0.0725P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.125 | (Δ/σ)max < 0.001 |
S = 1.00 | Δρmax = 0.11 e Å−3 |
2213 reflections | Δρmin = −0.11 e Å−3 |
168 parameters | Extinction correction: file:///iucrfs/e/yk2157/yk2157.cif, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0094 (14) |
Primary atom site location: structure-invariant direct methods |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.3099 (2) | 0.58146 (10) | 0.30727 (4) | 0.0844 (4) | |
H1 | 0.330751 | 0.540427 | 0.328769 | 0.127* | |
N1 | 0.42492 (18) | 0.40012 (12) | 0.34984 (5) | 0.0663 (4) | |
C6 | 0.4130 (2) | 0.40987 (13) | 0.27056 (6) | 0.0569 (4) | |
C5 | 0.4477 (2) | 0.35487 (14) | 0.23014 (5) | 0.0595 (4) | |
H5 | 0.495649 | 0.281288 | 0.230684 | 0.071* | |
C7 | 0.4516 (2) | 0.35261 (15) | 0.31204 (6) | 0.0611 (5) | |
H7 | 0.497415 | 0.278473 | 0.311267 | 0.073* | |
C1 | 0.3426 (2) | 0.52223 (13) | 0.26953 (6) | 0.0630 (5) | |
C9 | 0.4629 (2) | 0.33967 (15) | 0.38970 (6) | 0.0633 (5) | |
C4 | 0.4139 (2) | 0.40502 (16) | 0.18961 (6) | 0.0648 (5) | |
C14 | 0.5297 (2) | 0.40228 (16) | 0.42555 (6) | 0.0692 (5) | |
C10 | 0.4302 (2) | 0.22231 (16) | 0.39438 (6) | 0.0724 (5) | |
H10 | 0.383752 | 0.180914 | 0.370760 | 0.087* | |
C2 | 0.3077 (2) | 0.57301 (15) | 0.22917 (7) | 0.0739 (5) | |
H2 | 0.259857 | 0.646596 | 0.228269 | 0.089* | |
C3 | 0.3428 (2) | 0.51607 (16) | 0.19032 (7) | 0.0736 (5) | |
H3 | 0.318475 | 0.552460 | 0.163539 | 0.088* | |
C12 | 0.5363 (2) | 0.22599 (19) | 0.46974 (6) | 0.0759 (6) | |
C13 | 0.5668 (2) | 0.34303 (19) | 0.46426 (6) | 0.0771 (6) | |
H13 | 0.614731 | 0.383787 | 0.487863 | 0.093* | |
C11 | 0.4663 (3) | 0.16695 (17) | 0.43391 (6) | 0.0774 (5) | |
H11 | 0.443232 | 0.088594 | 0.436544 | 0.093* | |
C8 | 0.4528 (3) | 0.34410 (19) | 0.14659 (6) | 0.0893 (6) | |
H8A | 0.524423 | 0.392488 | 0.128285 | 0.134* | |
H8B | 0.345600 | 0.327600 | 0.131447 | 0.134* | |
H8C | 0.513250 | 0.273397 | 0.152645 | 0.134* | |
C15 | 0.5618 (3) | 0.53050 (18) | 0.42172 (7) | 0.0970 (7) | |
H15A | 0.638745 | 0.545186 | 0.397253 | 0.145* | |
H15B | 0.613945 | 0.558242 | 0.448631 | 0.145* | |
H15C | 0.453020 | 0.569432 | 0.416857 | 0.145* | |
C16 | 0.5729 (3) | 0.1666 (2) | 0.51352 (7) | 0.1014 (7) | |
H16A | 0.650363 | 0.213308 | 0.530910 | 0.152* | |
H16B | 0.625932 | 0.093075 | 0.508055 | 0.152* | |
H16C | 0.465487 | 0.155857 | 0.529352 | 0.152* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0935 (10) | 0.0608 (7) | 0.0990 (10) | 0.0078 (7) | 0.0082 (9) | −0.0177 (7) |
N1 | 0.0658 (9) | 0.0681 (9) | 0.0649 (10) | −0.0063 (7) | 0.0056 (8) | −0.0106 (8) |
C6 | 0.0514 (9) | 0.0516 (9) | 0.0676 (10) | −0.0051 (7) | −0.0008 (8) | −0.0042 (8) |
C5 | 0.0546 (9) | 0.0567 (9) | 0.0673 (11) | −0.0019 (7) | −0.0042 (9) | −0.0018 (9) |
C7 | 0.0588 (10) | 0.0572 (10) | 0.0672 (11) | −0.0014 (8) | 0.0001 (9) | −0.0053 (9) |
C1 | 0.0544 (9) | 0.0532 (9) | 0.0813 (12) | −0.0049 (7) | 0.0020 (10) | −0.0063 (10) |
C9 | 0.0585 (10) | 0.0731 (12) | 0.0582 (10) | −0.0035 (8) | 0.0057 (9) | −0.0098 (9) |
C4 | 0.0552 (10) | 0.0704 (12) | 0.0686 (12) | −0.0072 (8) | −0.0058 (9) | 0.0003 (9) |
C14 | 0.0639 (11) | 0.0820 (12) | 0.0618 (11) | −0.0096 (9) | 0.0138 (9) | −0.0186 (10) |
C10 | 0.0748 (12) | 0.0757 (12) | 0.0667 (12) | −0.0056 (9) | −0.0078 (10) | −0.0093 (9) |
C2 | 0.0638 (11) | 0.0548 (10) | 0.1032 (15) | −0.0006 (8) | −0.0073 (11) | 0.0066 (11) |
C3 | 0.0672 (12) | 0.0713 (12) | 0.0822 (14) | −0.0090 (10) | −0.0129 (10) | 0.0163 (10) |
C12 | 0.0647 (11) | 0.0989 (15) | 0.0642 (12) | 0.0014 (10) | −0.0002 (9) | −0.0072 (10) |
C13 | 0.0672 (12) | 0.1049 (16) | 0.0593 (11) | −0.0127 (11) | 0.0051 (9) | −0.0186 (10) |
C11 | 0.0842 (13) | 0.0762 (12) | 0.0716 (12) | 0.0001 (10) | −0.0075 (11) | −0.0006 (10) |
C8 | 0.0923 (15) | 0.1077 (16) | 0.0680 (13) | 0.0019 (12) | −0.0081 (11) | −0.0041 (11) |
C15 | 0.1220 (19) | 0.0904 (15) | 0.0785 (13) | −0.0314 (13) | 0.0196 (13) | −0.0273 (11) |
C16 | 0.1019 (17) | 0.130 (2) | 0.0727 (14) | −0.0012 (14) | −0.0154 (12) | 0.0056 (13) |
O1—C1 | 1.353 (2) | C10—H10 | 0.9300 |
O1—H1 | 0.8200 | C2—C3 | 1.371 (3) |
N1—C7 | 1.2823 (19) | C2—H2 | 0.9300 |
N1—C9 | 1.421 (2) | C3—H3 | 0.9300 |
C6—C5 | 1.401 (2) | C12—C11 | 1.387 (3) |
C6—C1 | 1.412 (2) | C12—C13 | 1.388 (3) |
C6—C7 | 1.447 (2) | C12—C16 | 1.515 (3) |
C5—C4 | 1.378 (2) | C13—H13 | 0.9300 |
C5—H5 | 0.9300 | C11—H11 | 0.9300 |
C7—H7 | 0.9300 | C8—H8A | 0.9600 |
C1—C2 | 1.378 (2) | C8—H8B | 0.9600 |
C9—C10 | 1.392 (2) | C8—H8C | 0.9600 |
C9—C14 | 1.400 (2) | C15—H15A | 0.9600 |
C4—C3 | 1.400 (3) | C15—H15B | 0.9600 |
C4—C8 | 1.507 (3) | C15—H15C | 0.9600 |
C14—C13 | 1.384 (3) | C16—H16A | 0.9600 |
C14—C15 | 1.513 (3) | C16—H16B | 0.9600 |
C10—C11 | 1.382 (2) | C16—H16C | 0.9600 |
C1—O1—H1 | 109.5 | C2—C3—H3 | 118.9 |
C7—N1—C9 | 120.40 (15) | C4—C3—H3 | 118.9 |
C5—C6—C1 | 118.32 (16) | C11—C12—C13 | 117.14 (18) |
C5—C6—C7 | 120.23 (15) | C11—C12—C16 | 121.7 (2) |
C1—C6—C7 | 121.44 (16) | C13—C12—C16 | 121.16 (18) |
C4—C5—C6 | 122.88 (16) | C14—C13—C12 | 123.48 (17) |
C4—C5—H5 | 118.6 | C14—C13—H13 | 118.3 |
C6—C5—H5 | 118.6 | C12—C13—H13 | 118.3 |
N1—C7—C6 | 122.54 (16) | C10—C11—C12 | 121.27 (19) |
N1—C7—H7 | 118.7 | C10—C11—H11 | 119.4 |
C6—C7—H7 | 118.7 | C12—C11—H11 | 119.4 |
O1—C1—C2 | 119.28 (16) | C4—C8—H8A | 109.5 |
O1—C1—C6 | 121.45 (17) | C4—C8—H8B | 109.5 |
C2—C1—C6 | 119.26 (17) | H8A—C8—H8B | 109.5 |
C10—C9—C14 | 119.71 (17) | C4—C8—H8C | 109.5 |
C10—C9—N1 | 122.14 (15) | H8A—C8—H8C | 109.5 |
C14—C9—N1 | 118.12 (16) | H8B—C8—H8C | 109.5 |
C5—C4—C3 | 116.66 (17) | C14—C15—H15A | 109.5 |
C5—C4—C8 | 121.83 (17) | C14—C15—H15B | 109.5 |
C3—C4—C8 | 121.50 (17) | H15A—C15—H15B | 109.5 |
C13—C14—C9 | 117.93 (17) | C14—C15—H15C | 109.5 |
C13—C14—C15 | 121.31 (17) | H15A—C15—H15C | 109.5 |
C9—C14—C15 | 120.76 (18) | H15B—C15—H15C | 109.5 |
C11—C10—C9 | 120.43 (17) | C12—C16—H16A | 109.5 |
C11—C10—H10 | 119.8 | C12—C16—H16B | 109.5 |
C9—C10—H10 | 119.8 | H16A—C16—H16B | 109.5 |
C3—C2—C1 | 120.63 (17) | C12—C16—H16C | 109.5 |
C3—C2—H2 | 119.7 | H16A—C16—H16C | 109.5 |
C1—C2—H2 | 119.7 | H16B—C16—H16C | 109.5 |
C2—C3—C4 | 122.24 (17) | ||
C1—C6—C5—C4 | −0.9 (2) | N1—C9—C14—C15 | −0.5 (3) |
C7—C6—C5—C4 | −179.97 (15) | C14—C9—C10—C11 | −1.2 (3) |
C9—N1—C7—C6 | 179.20 (14) | N1—C9—C10—C11 | −178.95 (16) |
C5—C6—C7—N1 | 178.78 (14) | O1—C1—C2—C3 | 178.64 (16) |
C1—C6—C7—N1 | −0.3 (2) | C6—C1—C2—C3 | −0.8 (3) |
C5—C6—C1—O1 | −178.36 (15) | C1—C2—C3—C4 | 0.3 (3) |
C7—C6—C1—O1 | 0.7 (2) | C5—C4—C3—C2 | −0.1 (3) |
C5—C6—C1—C2 | 1.1 (2) | C8—C4—C3—C2 | −179.56 (17) |
C7—C6—C1—C2 | −179.83 (15) | C9—C14—C13—C12 | −2.0 (3) |
C7—N1—C9—C10 | −38.6 (2) | C15—C14—C13—C12 | 178.60 (18) |
C7—N1—C9—C14 | 143.67 (16) | C11—C12—C13—C14 | 0.6 (3) |
C6—C5—C4—C3 | 0.4 (2) | C16—C12—C13—C14 | −177.52 (18) |
C6—C5—C4—C8 | 179.87 (15) | C9—C10—C11—C12 | −0.3 (3) |
C10—C9—C14—C13 | 2.3 (3) | C13—C12—C11—C10 | 0.6 (3) |
N1—C9—C14—C13 | −179.87 (15) | C16—C12—C11—C10 | 178.71 (19) |
C10—C9—C14—C15 | −178.33 (17) |
Cg2 is the centroid of the C9–C14 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.82 | 1.89 | 2.618 (2) | 147 |
C16—H16A···Cg2i | 0.96 | 2.93 (3) | 3.73 | 143 |
Symmetry code: (i) x+1/2, −y+1/2, −z. |
Acknowledgements
Author contributions are as follows. Conceptualization, SK, ND and ES; synthesis, AG and EA; writing (review and editing of the manuscript) SK, EA and AG; formal analysis, SK and ND; crystal-structure determination, ND; validation, SK, ND and EA; project administration, SK, ND and ES.
Funding information
This study was supported by Ondokuz Mayıs University under Project No. PYO·FEN.1906.19.001.
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