research communications
Synthesis and E)-2-benzyl-1,3-diphenylisothiouronium iodide
of (aSchool of Chemical Engineering, College of Engineering, Chonnam National, University, Gwangju, 61186, South Korea, and bDepartment of Chemistry Education, Sunchon National University, 255 Jungang-ro, Sunchon, 57922, South Korea
*Correspondence e-mail: chkwak@sunchon.ac.kr
In the title molecular salt, C20H19N2S+·I−, prepared by the reaction of 1,3-diphenylthiourea and benzyl iodide, the C—S—C thioether bond angle is 101.66 (9)° and electrons are delocalized over the N+= C—N skeleton. The dihedral angle between the aromatic rings attached to the N atoms is 40.60 (9)°. In the crystal, N—H⋯I hydrogen bonds link the components into [100] chains.
Keywords: crystal structure; thioether; N—H⋯I hydrogen bonding.
CCDC reference: 2127354
1. Chemical context
Isothiouronium salts containing an R–S–C–(NHR)2+ moiety have been investigated as their hydrogen–bonding motifs for molecular recognition of anions (Yeo & Hong, 1998; Kubo et al., 2000; Kato et al., 2004; Nguyen et al., 2009; Nguyen & Kim, 2010) and as organocatalysts (Nguyen & Kim, 2011, 2012; Lee et al., 2018; Kang et al., 2019). The isothiouronium group could enhance the acidity of their NH groups compared with thiourea and therefore be used as prospective alternative for thiourea. In addition, the chemical modification of the isothiouronium skeleton is readily performed using alkylation reactions of thiourea. As part of our work in this area, the synthesis and single-crystal structure of the title molecular salt, C20H19N2S+·I− are reported herein.
2. Structural commentary
The title compound, C20H19N2S+·I− (Fig. 1), is a molecular salt that arose from the reaction of 1,3-diphenylthiourea and benzyl iodide. There are three benzene rings, C1–C6 (I), C9–C14 (II) and C15–C20 (III) in the cation and the dihedral angles I/II, II/III and I/III are 50.36 (8), 40.60 (9) and 85.45 (9)°, respectively. In the cation, the N-[(phenylamino)methylene]benzenaminium and toluyl units are linked to the sulfur atom as a thioether. The C7—S1 and C8—S1 bond lengths are 1.823 (2) and 1.751 (2) Å, respectively, and the C—S—C bond angle is 101.66 (9)°. The conformation of C1 and C8 about the C7—S1 bond is gauche [C1—C7—S1—C8 = 49.53 (16)°]. The C—S—C bond angle in the title compound is somewhat smaller than that for di-p-tolyl sulfide (109°; Blackmore & Abrahams, 1955) or the angle (107.8°) in oligomeric [ArCOArSArCOAr] (Ar = 1,4-phenylene; Colquhoun et al., 1999) in which the aromatic rings are nearly coplanar. Rather, it is closer to that seen in diethyl sulfide [99.05 (4)°; Iijima et al., 1977]. This result can be explained by the large dihedral angle between the benzene rings in the title compound. In the N-[(phenylamino)methylene]benzenaminium moiety of the title cation, the π-electrons of the iminium double bond are delocalized over the N1—C6—N2 skeleton [the C8—N1 and C8—N2 bond distances are 1.319 (2) and 1.332 (2) Å, respectively, and N1—C8—N2 = 124.53 (16)°].
3. Supramolecular features
In the crystal, the cations and anions are linked by almost linear N—H⋯I hydrogen bonds (Fig. 2, Table 1), generating [100] chains of alternating cations and anions, with adjacent species in the chain related by simple translation. No significant aromatic π–π stacking interactions occur, the shortest centroid–centroid separation being greater than 4.7 Å.
4. Database survey
A search of the Cambridge Structural Database (CSD, via CCDC Access Structures, November 2021; Groom et al., 2016) resulted in 30 structures using isothiouronium as the keyword: 26 of them have a thioether skeleton. No results were found for 2-benzyl-1,3-diphenylisothiouronium or N-[(phenylamino)methylene]benzenaminium but the compound most similar to the title compound is S-benzylisothiouronium chloride (Barker & Powell, 1998). The bond angles of the thioether group in the S-benzylisothiouronium salts similar to the title compound are the range 102.6 to 104.8°, depending on the counter-anions (Hemalatha & Veeravazhuthi, 2008; Ishii et al., 2000; Pope & Boeyens, 1975).
5. Synthesis and crystallization
1,3-Diphenylthiourea (4.4 mmol) was added to a solution of benzyl iodide (13.2 mmol) in dry dichloromethane at room temperature. The reaction mixture was then stirred for 24 h and concentrated in vacuo. The residue was purified via flash (hexane:ethyl acetate = 8:2), to give a the title compound as a yellow solid (1.14 g, yield 58%). A solution of isothiouronium iodide in methanol was slowly evaporated at room temperature to give crystals of the title compound: m.p. 442–443 K; 1H NMR (300 MHz, DMSO): δ 7.21–7.39 (m, 15 H), δ 4.45 (s, 2 H); HR TOF–MS for C20H18N2S: calculated 318.1186 (M+), found 318.1185 (M+).
6. Refinement
Crystal data, data collection and structure . H atoms were positioned geometrically (C—H = 0.94–0.98 Å, N—H = 0.80 Å) and refined using a riding model withUiso(H) = 1.2Ueq(carrier).
details are summarized in Table 2Supporting information
CCDC reference: 2127354
https://doi.org/10.1107/S2056989021013086/hb7997sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989021013086/hb7997Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989021013086/hb7997Isup3.cml
Data collection: APEX2 (Bruker, 2016); cell
SAINT (Bruker, 2016); data reduction: SAINT (Bruker, 2016); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014/7 (Sheldrick, 2015); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2020); software used to prepare material for publication: SHELXTL ((Sheldrick, 2008)).C20H19N2S+·I− | Z = 2 |
Mr = 446.33 | F(000) = 444 |
Triclinic, P1 | Dx = 1.524 Mg m−3 |
a = 8.6382 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.8182 (3) Å | Cell parameters from 9837 reflections |
c = 12.1922 (4) Å | θ = 2.5–28.3° |
α = 77.2839 (12)° | µ = 1.76 mm−1 |
β = 85.1708 (11)° | T = 223 K |
γ = 74.7224 (10)° | Block, colourless |
V = 972.66 (6) Å3 | 0.27 × 0.21 × 0.15 mm |
PHOTON 100 CMOS diffractometer | 4594 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.023 |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | θmax = 28.3°, θmin = 2.2° |
Tmin = 0.649, Tmax = 0.746 | h = −11→11 |
31969 measured reflections | k = −13→13 |
4853 independent reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.025 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.063 | w = 1/[σ2(Fo2) + (0.0253P)2 + 0.8267P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
4853 reflections | Δρmax = 1.43 e Å−3 |
225 parameters | Δρmin = −1.03 e Å−3 |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
I1 | 0.26986 (2) | 0.34036 (2) | 0.87755 (2) | 0.04395 (6) | |
C1 | 0.3315 (2) | 0.4161 (2) | 0.28202 (17) | 0.0316 (4) | |
C2 | 0.1753 (3) | 0.4055 (3) | 0.3116 (2) | 0.0421 (5) | |
H2 | 0.1020 | 0.4181 | 0.2552 | 0.051* | |
C3 | 0.1274 (4) | 0.3766 (3) | 0.4237 (2) | 0.0581 (7) | |
H3 | 0.0216 | 0.3697 | 0.4430 | 0.070* | |
C4 | 0.2340 (5) | 0.3578 (3) | 0.5072 (2) | 0.0648 (8) | |
H4 | 0.2012 | 0.3380 | 0.5833 | 0.078* | |
C5 | 0.3880 (4) | 0.3682 (3) | 0.4786 (2) | 0.0594 (7) | |
H5 | 0.4609 | 0.3550 | 0.5355 | 0.071* | |
C6 | 0.4373 (3) | 0.3982 (2) | 0.3666 (2) | 0.0434 (5) | |
H6 | 0.5427 | 0.4064 | 0.3479 | 0.052* | |
C7 | 0.3883 (2) | 0.4451 (2) | 0.16100 (17) | 0.0330 (4) | |
H7A | 0.4058 | 0.3566 | 0.1320 | 0.040* | |
H7B | 0.4917 | 0.4696 | 0.1574 | 0.040* | |
S1 | 0.24895 (6) | 0.59022 (5) | 0.07051 (4) | 0.03231 (10) | |
C8 | 0.2092 (2) | 0.72734 (19) | 0.14740 (14) | 0.0252 (3) | |
N1 | 0.32455 (19) | 0.75297 (18) | 0.19789 (14) | 0.0278 (3) | |
H1N | 0.415 (3) | 0.724 (3) | 0.177 (2) | 0.036 (6)* | |
C9 | 0.3042 (2) | 0.82793 (19) | 0.28816 (15) | 0.0267 (3) | |
C10 | 0.2028 (2) | 0.7956 (2) | 0.37864 (17) | 0.0337 (4) | |
H10 | 0.1474 | 0.7243 | 0.3814 | 0.040* | |
C11 | 0.1841 (3) | 0.8703 (3) | 0.46533 (18) | 0.0426 (5) | |
H11 | 0.1147 | 0.8502 | 0.5270 | 0.051* | |
C12 | 0.2668 (3) | 0.9740 (3) | 0.46136 (19) | 0.0444 (5) | |
H12 | 0.2526 | 1.0250 | 0.5198 | 0.053* | |
C13 | 0.3700 (3) | 1.0030 (2) | 0.3723 (2) | 0.0421 (5) | |
H13 | 0.4272 | 1.0727 | 0.3708 | 0.051* | |
C14 | 0.3903 (2) | 0.9300 (2) | 0.28442 (18) | 0.0343 (4) | |
H14 | 0.4612 | 0.9493 | 0.2236 | 0.041* | |
N2 | 0.05644 (19) | 0.80281 (17) | 0.14673 (14) | 0.0276 (3) | |
H2N | −0.010 (3) | 0.765 (3) | 0.134 (2) | 0.034 (6)* | |
C15 | −0.0057 (2) | 0.94592 (19) | 0.16504 (15) | 0.0259 (3) | |
C16 | 0.0742 (2) | 1.0527 (2) | 0.12339 (16) | 0.0310 (4) | |
H16 | 0.1723 | 1.0316 | 0.0832 | 0.037* | |
C17 | 0.0078 (3) | 1.1909 (2) | 0.14165 (18) | 0.0380 (4) | |
H17 | 0.0622 | 1.2636 | 0.1148 | 0.046* | |
C18 | −0.1379 (3) | 1.2225 (2) | 0.19912 (19) | 0.0422 (5) | |
H18 | −0.1816 | 1.3161 | 0.2122 | 0.051* | |
C19 | −0.2187 (3) | 1.1169 (2) | 0.2371 (2) | 0.0427 (5) | |
H19 | −0.3192 | 1.1396 | 0.2743 | 0.051* | |
C20 | −0.1536 (2) | 0.9773 (2) | 0.22119 (18) | 0.0349 (4) | |
H20 | −0.2086 | 0.9051 | 0.2479 | 0.042* |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1 | 0.02782 (7) | 0.04822 (9) | 0.06798 (11) | −0.01720 (6) | 0.01189 (6) | −0.03314 (7) |
C1 | 0.0347 (10) | 0.0226 (8) | 0.0376 (10) | −0.0046 (7) | −0.0028 (8) | −0.0091 (7) |
C2 | 0.0428 (12) | 0.0421 (11) | 0.0462 (12) | −0.0177 (9) | 0.0024 (9) | −0.0122 (9) |
C3 | 0.0661 (17) | 0.0529 (15) | 0.0582 (16) | −0.0274 (13) | 0.0190 (13) | −0.0102 (12) |
C4 | 0.099 (2) | 0.0473 (15) | 0.0396 (13) | −0.0139 (15) | 0.0082 (14) | −0.0006 (11) |
C5 | 0.079 (2) | 0.0483 (14) | 0.0424 (13) | 0.0001 (13) | −0.0211 (13) | −0.0048 (11) |
C6 | 0.0419 (12) | 0.0377 (11) | 0.0474 (12) | 0.0001 (9) | −0.0127 (10) | −0.0102 (9) |
C7 | 0.0294 (9) | 0.0298 (9) | 0.0393 (10) | −0.0018 (7) | −0.0002 (8) | −0.0136 (8) |
S1 | 0.0365 (2) | 0.0321 (2) | 0.0301 (2) | −0.00373 (18) | −0.00340 (18) | −0.01509 (18) |
C8 | 0.0254 (8) | 0.0257 (8) | 0.0253 (8) | −0.0059 (6) | 0.0010 (6) | −0.0083 (6) |
N1 | 0.0199 (7) | 0.0326 (8) | 0.0330 (8) | −0.0045 (6) | 0.0014 (6) | −0.0146 (6) |
C9 | 0.0231 (8) | 0.0283 (8) | 0.0294 (8) | −0.0030 (6) | −0.0050 (6) | −0.0104 (7) |
C10 | 0.0331 (9) | 0.0385 (10) | 0.0329 (9) | −0.0115 (8) | −0.0011 (7) | −0.0117 (8) |
C11 | 0.0459 (12) | 0.0521 (13) | 0.0331 (10) | −0.0119 (10) | 0.0023 (9) | −0.0172 (9) |
C12 | 0.0509 (13) | 0.0452 (12) | 0.0415 (11) | −0.0055 (10) | −0.0079 (10) | −0.0237 (10) |
C13 | 0.0450 (12) | 0.0372 (11) | 0.0514 (13) | −0.0139 (9) | −0.0106 (10) | −0.0167 (9) |
C14 | 0.0322 (9) | 0.0348 (10) | 0.0393 (10) | −0.0110 (8) | −0.0029 (8) | −0.0106 (8) |
N2 | 0.0229 (7) | 0.0292 (8) | 0.0338 (8) | −0.0063 (6) | −0.0039 (6) | −0.0122 (6) |
C15 | 0.0253 (8) | 0.0262 (8) | 0.0257 (8) | −0.0028 (6) | −0.0054 (6) | −0.0070 (6) |
C16 | 0.0321 (9) | 0.0324 (9) | 0.0274 (8) | −0.0074 (7) | −0.0021 (7) | −0.0043 (7) |
C17 | 0.0489 (12) | 0.0300 (9) | 0.0353 (10) | −0.0118 (9) | −0.0066 (9) | −0.0025 (8) |
C18 | 0.0523 (13) | 0.0287 (10) | 0.0416 (11) | 0.0008 (9) | −0.0057 (9) | −0.0108 (8) |
C19 | 0.0368 (11) | 0.0405 (11) | 0.0460 (12) | 0.0010 (9) | 0.0052 (9) | −0.0143 (9) |
C20 | 0.0300 (9) | 0.0342 (10) | 0.0406 (10) | −0.0071 (8) | 0.0024 (8) | −0.0105 (8) |
C1—C6 | 1.386 (3) | C10—C11 | 1.390 (3) |
C1—C2 | 1.392 (3) | C10—H10 | 0.9400 |
C1—C7 | 1.505 (3) | C11—C12 | 1.381 (3) |
C2—C3 | 1.383 (4) | C11—H11 | 0.9400 |
C2—H2 | 0.9400 | C12—C13 | 1.374 (4) |
C3—C4 | 1.381 (5) | C12—H12 | 0.9400 |
C3—H3 | 0.9400 | C13—C14 | 1.391 (3) |
C4—C5 | 1.371 (5) | C13—H13 | 0.9400 |
C4—H4 | 0.9400 | C14—H14 | 0.9400 |
C5—C6 | 1.388 (4) | N2—C15 | 1.426 (2) |
C5—H5 | 0.9400 | N2—H2N | 0.81 (3) |
C6—H6 | 0.9400 | C15—C16 | 1.386 (3) |
C7—S1 | 1.823 (2) | C15—C20 | 1.391 (3) |
C7—H7A | 0.9800 | C16—C17 | 1.386 (3) |
C7—H7B | 0.9800 | C16—H16 | 0.9400 |
S1—C8 | 1.7513 (18) | C17—C18 | 1.383 (3) |
C8—N1 | 1.319 (2) | C17—H17 | 0.9400 |
C8—N2 | 1.332 (2) | C18—C19 | 1.376 (4) |
N1—C9 | 1.428 (2) | C18—H18 | 0.9400 |
N1—H1N | 0.80 (3) | C19—C20 | 1.388 (3) |
C9—C10 | 1.384 (3) | C19—H19 | 0.9400 |
C9—C14 | 1.388 (3) | C20—H20 | 0.9400 |
C6—C1—C2 | 118.9 (2) | C9—C10—H10 | 120.5 |
C6—C1—C7 | 119.46 (19) | C11—C10—H10 | 120.5 |
C2—C1—C7 | 121.67 (19) | C12—C11—C10 | 120.3 (2) |
C3—C2—C1 | 120.3 (2) | C12—C11—H11 | 119.9 |
C3—C2—H2 | 119.8 | C10—C11—H11 | 119.9 |
C1—C2—H2 | 119.8 | C13—C12—C11 | 120.3 (2) |
C4—C3—C2 | 120.4 (3) | C13—C12—H12 | 119.9 |
C4—C3—H3 | 119.8 | C11—C12—H12 | 119.9 |
C2—C3—H3 | 119.8 | C12—C13—C14 | 120.5 (2) |
C5—C4—C3 | 119.6 (3) | C12—C13—H13 | 119.8 |
C5—C4—H4 | 120.2 | C14—C13—H13 | 119.8 |
C3—C4—H4 | 120.2 | C9—C14—C13 | 118.8 (2) |
C4—C5—C6 | 120.6 (3) | C9—C14—H14 | 120.6 |
C4—C5—H5 | 119.7 | C13—C14—H14 | 120.6 |
C6—C5—H5 | 119.7 | C8—N2—C15 | 127.80 (16) |
C1—C6—C5 | 120.2 (2) | C8—N2—H2N | 117.4 (18) |
C1—C6—H6 | 119.9 | C15—N2—H2N | 114.8 (18) |
C5—C6—H6 | 119.9 | C16—C15—C20 | 120.73 (17) |
C1—C7—S1 | 113.83 (13) | C16—C15—N2 | 121.30 (17) |
C1—C7—H7A | 108.8 | C20—C15—N2 | 117.89 (17) |
S1—C7—H7A | 108.8 | C17—C16—C15 | 119.28 (19) |
C1—C7—H7B | 108.8 | C17—C16—H16 | 120.4 |
S1—C7—H7B | 108.8 | C15—C16—H16 | 120.4 |
H7A—C7—H7B | 107.7 | C18—C17—C16 | 120.3 (2) |
C8—S1—C7 | 101.66 (9) | C18—C17—H17 | 119.8 |
N1—C8—N2 | 124.53 (16) | C16—C17—H17 | 119.8 |
N1—C8—S1 | 121.30 (14) | C19—C18—C17 | 120.0 (2) |
N2—C8—S1 | 114.14 (13) | C19—C18—H18 | 120.0 |
C8—N1—C9 | 126.22 (16) | C17—C18—H18 | 120.0 |
C8—N1—H1N | 118.0 (19) | C18—C19—C20 | 120.7 (2) |
C9—N1—H1N | 115.7 (19) | C18—C19—H19 | 119.7 |
C10—C9—C14 | 121.18 (18) | C20—C19—H19 | 119.7 |
C10—C9—N1 | 119.87 (17) | C19—C20—C15 | 118.9 (2) |
C14—C9—N1 | 118.93 (17) | C19—C20—H20 | 120.5 |
C9—C10—C11 | 119.0 (2) | C15—C20—H20 | 120.5 |
C6—C1—C2—C3 | −0.5 (3) | C9—C10—C11—C12 | −0.6 (3) |
C7—C1—C2—C3 | 179.0 (2) | C10—C11—C12—C13 | −0.8 (4) |
C1—C2—C3—C4 | 0.0 (4) | C11—C12—C13—C14 | 1.0 (4) |
C2—C3—C4—C5 | 0.1 (4) | C10—C9—C14—C13 | −1.7 (3) |
C3—C4—C5—C6 | 0.3 (4) | N1—C9—C14—C13 | 179.86 (18) |
C2—C1—C6—C5 | 0.9 (3) | C12—C13—C14—C9 | 0.3 (3) |
C7—C1—C6—C5 | −178.6 (2) | N1—C8—N2—C15 | 21.8 (3) |
C4—C5—C6—C1 | −0.8 (4) | S1—C8—N2—C15 | −156.34 (15) |
C6—C1—C7—S1 | −134.43 (17) | C8—N2—C15—C16 | 38.5 (3) |
C2—C1—C7—S1 | 46.1 (2) | C8—N2—C15—C20 | −144.78 (19) |
C1—C7—S1—C8 | 49.53 (16) | C20—C15—C16—C17 | 2.2 (3) |
C7—S1—C8—N1 | 41.74 (18) | N2—C15—C16—C17 | 178.92 (17) |
C7—S1—C8—N2 | −140.01 (15) | C15—C16—C17—C18 | −1.1 (3) |
N2—C8—N1—C9 | 22.1 (3) | C16—C17—C18—C19 | −0.9 (3) |
S1—C8—N1—C9 | −159.85 (15) | C17—C18—C19—C20 | 1.8 (4) |
C8—N1—C9—C10 | 46.0 (3) | C18—C19—C20—C15 | −0.7 (3) |
C8—N1—C9—C14 | −135.6 (2) | C16—C15—C20—C19 | −1.4 (3) |
C14—C9—C10—C11 | 1.9 (3) | N2—C15—C20—C19 | −178.16 (18) |
N1—C9—C10—C11 | −179.70 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···I1i | 0.80 (3) | 2.69 (3) | 3.4781 (17) | 171 (2) |
N2—H2N···I1ii | 0.80 (3) | 2.73 (3) | 3.5242 (17) | 169 (2) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+1, −z+1. |
Footnotes
‡Additional correspondence author, email: thkim@jnu.ac.kr.
Acknowledgements
The X-ray data were obtained from the Western Seoul Center of Korea Basic Science Institute.
Funding information
This research was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2018R1D1A3B07040876 and 2021R1I1A3A04037235).
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