research communications
tert-butylamino)-3-mesitylpropan-2-ol hemihydrate
and Hirshfeld surface analysis of 1-(a"Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan, bDepartment of Chemistry, Baku State University, Z. Khalilov str. 23, Az 1148, Baku, Azerbaijan, cPeoples' Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation, dN. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation, eDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey, and fAcad. Sci. Republ. Tadzhikistan, Kh. Yu. Yusufbekov Pamir Biol Inst, 1 Kholdorova St, Khorog 736002, Gbao, Tajikistan
*Correspondence e-mail: akkurt@erciyes.edu.tr
The title compound, 2C16H27NO·H2O, crystallizes in the monoclinic P21/c with two independent molecules (A and B) in the In the crystal, molecules A and B are linked through the water molecules by intermolecular O—H⋯O and O—H⋯N hydrogen bonds, producing chains along the b-axis direction. These chains are linked with neighboring chains parallel to the (103) plane via C—H⋯π interactions, generating ribbons along the b-axis direction. The stability of the molecular packaging is ensured by van der Waals interactions between the ribbons. According to the Hirshfeld surface study, H⋯H interactions are the most significant contributors to the crystal packing (80.3% for molecule A and 84.8% for molecule B).
Keywords: crystal structure; 1,2-amino alcohols; hydrogen bonds; C—H⋯π interactions; Hirshfeld surface analysis.
CCDC reference: 2168161
1. Chemical context
Amine group-containing compounds are of great interest in the fields of organic synthesis, catalysis, material science and medicinal chemistry (Zubkov et al., 2018; Shikhaliyev et al., 2019; Viswanathan et al., 2019; Gurbanov et al., 2020). In particular, the β-amino alcohol moiety is the predominant structural motif in a series of natural and synthetic biologically active molecules (Lee & Kang, 2004). Amino alcohol derivatives are currently being studied for their antimicrobial, antifungal, antioxidant, cytotoxic, enzyme inhibitory and other important biological activities, which have been well documented in recent works (Baker et al., 2021; Estolano-Cobián et al., 2020; Tafelska-Kaczmarek et al., 2020).
In this study, in the framework of ongoing structural studies (Safavora et al., 2019; Aliyeva et al., 2011; Mamedov et al., 2022), we report the and Hirshfeld surface analysis of the title compound, 1-(tert-butylamino)-3-mesitylpropan-2-ol hemihydrate.
2. Structural commentary
The title compound (Fig. 1) contains the two independent molecules (molecule A containing atom N1 and molecule B containing N2) in the As shown in Fig. 2 (r.m.s. deviation = 0.006 Å), while the 1,2,3,5-tetramethylbenzene parts of molecules A and B are overlapped, their 2-(tert-butylamino)ethan-1-ol moieties do not overlap, but rather are oriented in opposite directions. Atoms C2 in molecule A and C18 in molecule B have opposite chiralities. The about the C2 atom is R and that about C18, S. The values of the geometric parameters of molecules A and B are normal and compatible with those of the related compounds mentioned in the Database survey section.
3. Supramolecular features and Hirshfeld surface analysis
In the crystal, molecules A and B are linked through the water molecules by intermolecular O—H⋯O and O—H⋯N hydrogen bonds (Table 1; Figs. 3 and 4), forming chains along the b-axis direction. These chains are linked by C—H⋯π interactions with neighboring chains parallel to the (103) plane, forming ribbons along the b-axis direction (Table 1; Figs. 5 and 6). The stability of the molecular packing is ensured by van der Waals interactions between the ribbons.
Hirshfeld surfaces were generated for both independent molecules using Crystal Explorer 17 (Turner et al., 2017). The dnorm mappings for molecules A and B were performed in the ranges −0.6784 to 1.2952 a.u. and −0.6765 to 1.3828 a.u., respectively. The O—H⋯O and O—H⋯N interactions are indicated by red areas on the Hirshfeld surfaces (Fig. 7a,b for A and Fig. 7c,d for B).
Fingerprint plots (Fig. 8) reveal that while H⋯H interactions (80.3% for molecule A and 84.8% for molecule B) make the largest contributions to surface contacts (Tables 1 and 2), C⋯H/H⋯C contacts (13.0% for molecule A and 9.1% for molecule B) are also important. Other, less notable linkages are O⋯H/H⋯O (5.7% contribution for molecule A and 4.3% for molecule B) and N⋯H/H⋯N (1.0% for molecule A and 1.8% for molecule B). The surroundings of molecules A and B are very similar, as can be observed from the comparison of the supplied data.
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4. Database survey
Two related compounds were found in a search of the Cambridge Structural Database (CSD, version 5.42, update of September 2021; Groom et al., 2016), viz. 1-methylamino-3-(2,4,6-trimethylphenyl)propan-2-ol (ULIMUY; Maharramov et al., 2011a) and 3-[2-hydroxy-3-(2,4,6-trimethylphenyl)propyl]-3-methyl-1-phenylthiourea (URAPOT; Maharramov et al., 2011b).
In ULIMUY, the methylaminopropyl chain adopts an extended zigzag conformation and the N atom shows a trigonal coordination. The N atom acts as hydrogen-bond acceptor to the hydroxy group of an adjacent molecule to generate a helical chain running along the b-axis of the monoclinic unit cell.
In URAPOT, the four-atoms N—C(=S)—N unit is planar (r.m.s. deviation of 0.005 Å); the phenyl ring connected to one of the two flanking N atoms is twisted out of this plane by 28.6 (1)°. The propyl chain connected to the other N atom bears a hydroxy substituent; this serves as hydrogen-bond donor and acceptor to the double-bonded S atom of an inversion-related molecule, generating a hydrogen-bonded dimer.
5. Synthesis and crystallization
The title compound was synthesized using our previously reported procedure (Khalilov et al., 2021), and colorless crystals were obtained upon recrystallization from an ethanol solution.
6. Refinement
Crystal data, data collection and structure . Carbon-bound H atoms were placed in calculated positions [C—H = 0.95 to 1.00 Å; Uiso(H) = 1.2 or 1.5Ueq(C)] and were included in the in the riding-model approximation. The hydroxy and amino H atoms were located in a difference Fourier map, and were freely refined [O1—H1O = 0.91 (2) Å, O2—H2O = 0.91 (2) Å, N1—H1N = 0.922 (16) Å and N2—H2N = 0.922 (18) Å]. In molecule B, the methyl groups of the 2-methylpropane moiety are disordered over two sets of sites with an occupancy ratio of 0.65 (3):0.35 (3). The water molecule is disordered over two positions with an occupancy ratio of 0.59 (3):0.41 (3). The two H atoms of the water molecule were found in a difference-Fourier map and freely refined [O3—H3C = 0.95 (2) Å, O3—H3D = 0.98 (3) Å, O3′—H3C = 0.92 (2) Å and O3′—H3D = 1.07 (3) Å]. The anisotropic displacement parameters of the O3 and O3′ atoms of the disordered water molecule were restrained to be equal (SIMU). SADI and DFIX commands were used for the treatment of the disordered methyl groups of the 2-methylpropane moiety of molecule B.
details are summarized in Table 3
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Supporting information
CCDC reference: 2168161
https://doi.org/10.1107/S2056989022004297/jy2019sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989022004297/jy2019Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989022004297/jy2019Isup3.cml
Data collection: CrysAlis PRO (Rigaku OD, 2021); cell
CrysAlis PRO (Rigaku OD, 2021); data reduction: CrysAlis PRO (Rigaku OD, 2021); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL (Sheldrick, 2015b); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2020).2C16H27NO·H2O | F(000) = 1144 |
Mr = 516.79 | Dx = 1.085 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 13.06508 (16) Å | Cell parameters from 22446 reflections |
b = 5.81242 (6) Å | θ = 2.2–79.1° |
c = 41.7384 (5) Å | µ = 0.53 mm−1 |
β = 93.3315 (11)° | T = 100 K |
V = 3164.25 (6) Å3 | Plate, colourless |
Z = 4 | 0.36 × 0.12 × 0.06 mm |
XtaLAB Synergy, Dualflex, HyPix diffractometer | 6251 reflections with I > 2σ(I) |
Radiation source: micro-focus sealed X-ray tube | Rint = 0.041 |
φ and ω scans | θmax = 79.7°, θmin = 3.4° |
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2021) | h = −16→16 |
Tmin = 0.805, Tmax = 0.941 | k = −6→7 |
40427 measured reflections | l = −53→52 |
6866 independent reflections |
Refinement on F2 | Primary atom site location: difference Fourier map |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: mixed |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0467P)2 + 0.9632P] where P = (Fo2 + 2Fc2)/3 |
6866 reflections | (Δ/σ)max = 0.001 |
411 parameters | Δρmax = 0.19 e Å−3 |
21 restraints | Δρmin = −0.20 e Å−3 |
Experimental. CrysAlisPro 1.171.41.117a (Rigaku OD, 2021) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.83664 (7) | 0.63481 (14) | 0.38179 (2) | 0.02938 (18) | |
H1O | 0.7755 (17) | 0.562 (4) | 0.3786 (5) | 0.068 (6)* | |
N1 | 0.75396 (7) | 0.93228 (16) | 0.42788 (2) | 0.02387 (19) | |
H1N | 0.7600 (11) | 0.774 (3) | 0.4290 (3) | 0.031 (4)* | |
C1 | 0.82855 (8) | 1.01229 (19) | 0.40524 (3) | 0.0256 (2) | |
H1A | 0.8989 | 0.9969 | 0.4152 | 0.031* | |
H1B | 0.8163 | 1.1769 | 0.4003 | 0.031* | |
C2 | 0.81900 (8) | 0.87226 (18) | 0.37442 (3) | 0.0252 (2) | |
H2 | 0.7481 | 0.8905 | 0.3644 | 0.030* | |
C3 | 0.89639 (9) | 0.9587 (2) | 0.35095 (3) | 0.0293 (2) | |
H3A | 0.8870 | 1.1266 | 0.3481 | 0.035* | |
H3B | 0.9665 | 0.9334 | 0.3606 | 0.035* | |
C4 | 0.88794 (9) | 0.8449 (2) | 0.31835 (3) | 0.0291 (2) | |
C5 | 0.81775 (9) | 0.9285 (2) | 0.29442 (3) | 0.0325 (3) | |
C6 | 0.81180 (9) | 0.8239 (2) | 0.26423 (3) | 0.0360 (3) | |
H6 | 0.7642 | 0.8817 | 0.2481 | 0.043* | |
C7 | 0.87307 (10) | 0.6384 (2) | 0.25699 (3) | 0.0363 (3) | |
C8 | 0.94234 (10) | 0.5581 (2) | 0.28094 (3) | 0.0359 (3) | |
H8 | 0.9851 | 0.4314 | 0.2764 | 0.043* | |
C9 | 0.95115 (9) | 0.6570 (2) | 0.31138 (3) | 0.0322 (3) | |
C10 | 0.74982 (11) | 1.1329 (2) | 0.30008 (3) | 0.0393 (3) | |
H10A | 0.7097 | 1.1034 | 0.3188 | 0.059* | |
H10B | 0.7033 | 1.1580 | 0.2811 | 0.059* | |
H10C | 0.7924 | 1.2700 | 0.3040 | 0.059* | |
C11 | 0.86603 (12) | 0.5272 (3) | 0.22430 (3) | 0.0462 (3) | |
H11A | 0.8362 | 0.3732 | 0.2259 | 0.069* | |
H11B | 0.9348 | 0.5150 | 0.2162 | 0.069* | |
H11C | 0.8225 | 0.6210 | 0.2095 | 0.069* | |
C12 | 1.03108 (10) | 0.5649 (3) | 0.33569 (3) | 0.0400 (3) | |
H12A | 1.0620 | 0.4256 | 0.3272 | 0.060* | |
H12B | 0.9987 | 0.5279 | 0.3557 | 0.060* | |
H12C | 1.0843 | 0.6814 | 0.3400 | 0.060* | |
C13 | 0.76617 (8) | 1.02608 (19) | 0.46103 (3) | 0.0247 (2) | |
C14 | 0.86787 (9) | 0.9562 (2) | 0.47850 (3) | 0.0336 (3) | |
H14A | 0.8726 | 0.7880 | 0.4794 | 0.050* | |
H14B | 0.8710 | 1.0182 | 0.5004 | 0.050* | |
H14C | 0.9250 | 1.0176 | 0.4669 | 0.050* | |
C15 | 0.67782 (9) | 0.9273 (2) | 0.47916 (3) | 0.0288 (2) | |
H15A | 0.6125 | 0.9847 | 0.4695 | 0.043* | |
H15B | 0.6853 | 0.9748 | 0.5017 | 0.043* | |
H15C | 0.6790 | 0.7589 | 0.4779 | 0.043* | |
C16 | 0.75688 (10) | 1.2882 (2) | 0.45967 (3) | 0.0306 (2) | |
H16A | 0.8151 | 1.3522 | 0.4488 | 0.046* | |
H16B | 0.7568 | 1.3497 | 0.4815 | 0.046* | |
H16C | 0.6928 | 1.3306 | 0.4478 | 0.046* | |
O2 | 0.57184 (6) | 1.06462 (16) | 0.39828 (2) | 0.0352 (2) | |
H2O | 0.6278 (15) | 1.004 (3) | 0.4093 (5) | 0.062 (5)* | |
N2 | 0.50806 (8) | 0.78162 (18) | 0.34494 (2) | 0.0306 (2) | |
H2N | 0.5598 (13) | 0.887 (3) | 0.3424 (4) | 0.047 (4)* | |
C17 | 0.43655 (8) | 0.8875 (2) | 0.36627 (3) | 0.0283 (2) | |
H17A | 0.3746 | 0.7901 | 0.3671 | 0.034* | |
H17B | 0.4151 | 1.0399 | 0.3577 | 0.034* | |
C18 | 0.48579 (8) | 0.91565 (19) | 0.39983 (3) | 0.0264 (2) | |
H18 | 0.5096 | 0.7620 | 0.4081 | 0.032* | |
C19 | 0.41002 (9) | 1.01744 (19) | 0.42282 (3) | 0.0271 (2) | |
H19A | 0.4465 | 1.0414 | 0.4440 | 0.032* | |
H19B | 0.3876 | 1.1702 | 0.4146 | 0.032* | |
C20 | 0.31558 (8) | 0.87209 (19) | 0.42747 (2) | 0.0244 (2) | |
C21 | 0.32295 (8) | 0.67813 (19) | 0.44783 (2) | 0.0246 (2) | |
C22 | 0.23623 (9) | 0.5454 (2) | 0.45241 (3) | 0.0269 (2) | |
H22 | 0.2424 | 0.4139 | 0.4659 | 0.032* | |
C23 | 0.14096 (9) | 0.5996 (2) | 0.43785 (3) | 0.0286 (2) | |
C24 | 0.13486 (8) | 0.7904 (2) | 0.41774 (3) | 0.0287 (2) | |
H24 | 0.0704 | 0.8298 | 0.4075 | 0.034* | |
C25 | 0.21998 (9) | 0.92618 (19) | 0.41200 (3) | 0.0264 (2) | |
C26 | 0.42242 (9) | 0.6101 (2) | 0.46563 (3) | 0.0288 (2) | |
H26A | 0.4727 | 0.5667 | 0.4502 | 0.043* | |
H26B | 0.4103 | 0.4793 | 0.4797 | 0.043* | |
H26C | 0.4488 | 0.7403 | 0.4785 | 0.043* | |
C27 | 0.04768 (9) | 0.4554 (2) | 0.44353 (3) | 0.0369 (3) | |
H27A | 0.0240 | 0.4888 | 0.4649 | 0.055* | |
H27B | 0.0654 | 0.2920 | 0.4422 | 0.055* | |
H27C | −0.0070 | 0.4917 | 0.4272 | 0.055* | |
C28 | 0.20503 (9) | 1.1238 (2) | 0.38851 (3) | 0.0317 (2) | |
H28A | 0.2394 | 1.2613 | 0.3974 | 0.047* | |
H28B | 0.1316 | 1.1549 | 0.3847 | 0.047* | |
H28C | 0.2344 | 1.0828 | 0.3682 | 0.047* | |
C29 | 0.46433 (9) | 0.7090 (2) | 0.31290 (3) | 0.0363 (3) | |
C30 | 0.5508 (4) | 0.5955 (11) | 0.29559 (17) | 0.074 (2) | 0.65 (3) |
H30A | 0.6091 | 0.7013 | 0.2952 | 0.111* | 0.65 (3) |
H30B | 0.5266 | 0.5583 | 0.2735 | 0.111* | 0.65 (3) |
H30C | 0.5722 | 0.4540 | 0.3069 | 0.111* | 0.65 (3) |
C31 | 0.3778 (4) | 0.5356 (8) | 0.31656 (15) | 0.0441 (12) | 0.65 (3) |
H31A | 0.3992 | 0.4212 | 0.3329 | 0.066* | 0.65 (3) |
H31B | 0.3621 | 0.4583 | 0.2960 | 0.066* | 0.65 (3) |
H31C | 0.3166 | 0.6162 | 0.3232 | 0.066* | 0.65 (3) |
C32 | 0.4236 (5) | 0.9172 (8) | 0.29385 (14) | 0.0441 (12) | 0.65 (3) |
H32A | 0.3700 | 0.9927 | 0.3055 | 0.066* | 0.65 (3) |
H32B | 0.3950 | 0.8668 | 0.2728 | 0.066* | 0.65 (3) |
H32C | 0.4797 | 1.0258 | 0.2910 | 0.066* | 0.65 (3) |
C30' | 0.5561 (7) | 0.632 (3) | 0.2945 (2) | 0.071 (4) | 0.35 (3) |
H30D | 0.5967 | 0.7664 | 0.2891 | 0.107* | 0.35 (3) |
H30E | 0.5317 | 0.5529 | 0.2748 | 0.107* | 0.35 (3) |
H30F | 0.5987 | 0.5265 | 0.3079 | 0.107* | 0.35 (3) |
C31' | 0.3957 (13) | 0.503 (2) | 0.3189 (3) | 0.088 (5) | 0.35 (3) |
H31D | 0.4373 | 0.3773 | 0.3285 | 0.132* | 0.35 (3) |
H31E | 0.3625 | 0.4508 | 0.2985 | 0.132* | 0.35 (3) |
H31F | 0.3432 | 0.5472 | 0.3336 | 0.132* | 0.35 (3) |
C32' | 0.4036 (12) | 0.891 (2) | 0.2936 (3) | 0.044 (2) | 0.35 (3) |
H32D | 0.3457 | 0.9426 | 0.3057 | 0.066* | 0.35 (3) |
H32E | 0.3779 | 0.8259 | 0.2731 | 0.066* | 0.35 (3) |
H32F | 0.4482 | 1.0228 | 0.2897 | 0.066* | 0.35 (3) |
O3 | 0.6489 (2) | 0.4428 (10) | 0.3681 (3) | 0.0388 (14) | 0.59 (3) |
O3' | 0.6420 (5) | 0.4819 (13) | 0.3828 (5) | 0.044 (3) | 0.41 (3) |
H3C | 0.6156 (16) | 0.335 (4) | 0.3812 (5) | 0.072 (6)* | |
H3D | 0.5940 (18) | 0.556 (4) | 0.3639 (6) | 0.083 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0295 (4) | 0.0246 (4) | 0.0344 (4) | 0.0009 (3) | 0.0046 (3) | 0.0014 (3) |
N1 | 0.0240 (4) | 0.0230 (4) | 0.0249 (4) | −0.0032 (3) | 0.0039 (3) | −0.0005 (3) |
C1 | 0.0234 (5) | 0.0268 (5) | 0.0270 (5) | −0.0030 (4) | 0.0039 (4) | 0.0010 (4) |
C2 | 0.0232 (5) | 0.0250 (5) | 0.0277 (5) | 0.0005 (4) | 0.0038 (4) | 0.0019 (4) |
C3 | 0.0270 (5) | 0.0315 (6) | 0.0300 (6) | −0.0026 (4) | 0.0063 (4) | 0.0010 (5) |
C4 | 0.0259 (5) | 0.0331 (6) | 0.0290 (5) | −0.0024 (4) | 0.0086 (4) | 0.0021 (4) |
C5 | 0.0287 (6) | 0.0386 (6) | 0.0312 (6) | 0.0008 (5) | 0.0095 (4) | 0.0042 (5) |
C6 | 0.0307 (6) | 0.0487 (7) | 0.0291 (6) | 0.0007 (5) | 0.0058 (5) | 0.0030 (5) |
C7 | 0.0313 (6) | 0.0458 (7) | 0.0327 (6) | −0.0048 (5) | 0.0099 (5) | −0.0035 (5) |
C8 | 0.0301 (6) | 0.0398 (7) | 0.0388 (6) | 0.0019 (5) | 0.0105 (5) | −0.0044 (5) |
C9 | 0.0257 (5) | 0.0375 (6) | 0.0342 (6) | 0.0003 (5) | 0.0081 (4) | 0.0004 (5) |
C10 | 0.0409 (7) | 0.0437 (7) | 0.0341 (6) | 0.0098 (6) | 0.0088 (5) | 0.0077 (5) |
C11 | 0.0438 (7) | 0.0593 (9) | 0.0363 (7) | −0.0035 (7) | 0.0082 (6) | −0.0105 (6) |
C12 | 0.0322 (6) | 0.0471 (7) | 0.0408 (7) | 0.0089 (5) | 0.0036 (5) | −0.0019 (6) |
C13 | 0.0251 (5) | 0.0251 (5) | 0.0240 (5) | −0.0023 (4) | 0.0009 (4) | 0.0000 (4) |
C14 | 0.0292 (6) | 0.0405 (6) | 0.0305 (6) | −0.0014 (5) | −0.0024 (4) | 0.0030 (5) |
C15 | 0.0311 (6) | 0.0297 (5) | 0.0260 (5) | −0.0032 (4) | 0.0046 (4) | 0.0002 (4) |
C16 | 0.0377 (6) | 0.0258 (5) | 0.0285 (5) | −0.0035 (5) | 0.0028 (5) | −0.0026 (4) |
O2 | 0.0249 (4) | 0.0390 (5) | 0.0412 (5) | −0.0096 (3) | −0.0023 (3) | 0.0157 (4) |
N2 | 0.0274 (5) | 0.0342 (5) | 0.0307 (5) | 0.0032 (4) | 0.0048 (4) | 0.0018 (4) |
C17 | 0.0247 (5) | 0.0339 (6) | 0.0266 (5) | 0.0012 (4) | 0.0028 (4) | 0.0027 (4) |
C18 | 0.0229 (5) | 0.0273 (5) | 0.0288 (5) | −0.0046 (4) | 0.0006 (4) | 0.0058 (4) |
C19 | 0.0286 (5) | 0.0265 (5) | 0.0258 (5) | −0.0043 (4) | −0.0010 (4) | 0.0008 (4) |
C20 | 0.0252 (5) | 0.0267 (5) | 0.0215 (5) | −0.0001 (4) | 0.0027 (4) | −0.0021 (4) |
C21 | 0.0240 (5) | 0.0284 (5) | 0.0215 (5) | −0.0006 (4) | 0.0025 (4) | −0.0016 (4) |
C22 | 0.0275 (5) | 0.0298 (5) | 0.0236 (5) | −0.0016 (4) | 0.0037 (4) | 0.0012 (4) |
C23 | 0.0240 (5) | 0.0356 (6) | 0.0266 (5) | −0.0022 (4) | 0.0045 (4) | −0.0027 (4) |
C24 | 0.0221 (5) | 0.0373 (6) | 0.0268 (5) | 0.0034 (4) | 0.0013 (4) | −0.0024 (5) |
C25 | 0.0279 (5) | 0.0288 (5) | 0.0227 (5) | 0.0029 (4) | 0.0024 (4) | −0.0023 (4) |
C26 | 0.0263 (5) | 0.0319 (6) | 0.0278 (5) | −0.0016 (4) | −0.0005 (4) | 0.0050 (4) |
C27 | 0.0267 (6) | 0.0455 (7) | 0.0389 (6) | −0.0052 (5) | 0.0048 (5) | 0.0025 (5) |
C28 | 0.0305 (6) | 0.0341 (6) | 0.0303 (6) | 0.0058 (5) | 0.0007 (4) | 0.0033 (5) |
C29 | 0.0402 (7) | 0.0371 (6) | 0.0319 (6) | 0.0003 (5) | 0.0058 (5) | −0.0048 (5) |
C30 | 0.049 (3) | 0.105 (4) | 0.071 (4) | 0.004 (3) | 0.024 (3) | −0.038 (3) |
C31 | 0.055 (2) | 0.0376 (16) | 0.0394 (19) | −0.0078 (15) | 0.0027 (13) | −0.0046 (13) |
C32 | 0.055 (2) | 0.052 (2) | 0.0242 (16) | −0.0116 (16) | −0.0053 (14) | 0.0028 (14) |
C30' | 0.087 (8) | 0.087 (6) | 0.038 (5) | 0.049 (5) | −0.008 (4) | −0.029 (4) |
C31' | 0.147 (11) | 0.053 (5) | 0.060 (5) | −0.052 (6) | −0.023 (7) | −0.003 (4) |
C32' | 0.044 (4) | 0.044 (3) | 0.041 (4) | −0.004 (3) | −0.012 (3) | −0.005 (3) |
O3 | 0.0282 (9) | 0.0331 (13) | 0.055 (3) | −0.0023 (7) | 0.0027 (11) | 0.0153 (17) |
O3' | 0.0310 (15) | 0.0302 (17) | 0.068 (7) | −0.0053 (12) | −0.011 (2) | 0.016 (3) |
O1—C2 | 1.4298 (13) | C18—C19 | 1.5367 (16) |
O1—H1O | 0.91 (2) | C18—H18 | 1.0000 |
N1—C1 | 1.4718 (13) | C19—C20 | 1.5171 (15) |
N1—C13 | 1.4872 (14) | C19—H19A | 0.9900 |
N1—H1N | 0.922 (16) | C19—H19B | 0.9900 |
C1—C2 | 1.5211 (15) | C20—C25 | 1.4079 (15) |
C1—H1A | 0.9900 | C20—C21 | 1.4118 (15) |
C1—H1B | 0.9900 | C21—C22 | 1.3930 (15) |
C2—C3 | 1.5330 (15) | C21—C26 | 1.5115 (15) |
C2—H2 | 1.0000 | C22—C23 | 1.3892 (16) |
C3—C4 | 1.5117 (16) | C22—H22 | 0.9500 |
C3—H3A | 0.9900 | C23—C24 | 1.3899 (17) |
C3—H3B | 0.9900 | C23—C27 | 1.5094 (16) |
C4—C5 | 1.4030 (17) | C24—C25 | 1.3958 (16) |
C4—C9 | 1.4096 (17) | C24—H24 | 0.9500 |
C5—C6 | 1.3972 (18) | C25—C28 | 1.5151 (16) |
C5—C10 | 1.5097 (18) | C26—H26A | 0.9800 |
C6—C7 | 1.3863 (19) | C26—H26B | 0.9800 |
C6—H6 | 0.9500 | C26—H26C | 0.9800 |
C7—C8 | 1.3896 (19) | C27—H27A | 0.9800 |
C7—C11 | 1.5081 (18) | C27—H27B | 0.9800 |
C8—C9 | 1.3930 (18) | C27—H27C | 0.9800 |
C8—H8 | 0.9500 | C28—H28A | 0.9800 |
C9—C12 | 1.5112 (18) | C28—H28B | 0.9800 |
C10—H10A | 0.9800 | C28—H28C | 0.9800 |
C10—H10B | 0.9800 | C29—C32' | 1.525 (3) |
C10—H10C | 0.9800 | C29—C30 | 1.526 (2) |
C11—H11A | 0.9800 | C29—C31' | 1.527 (3) |
C11—H11B | 0.9800 | C29—C32 | 1.527 (2) |
C11—H11C | 0.9800 | C29—C30' | 1.528 (3) |
C12—H12A | 0.9800 | C29—C31 | 1.529 (2) |
C12—H12B | 0.9800 | C30—H30A | 0.9800 |
C12—H12C | 0.9800 | C30—H30B | 0.9800 |
C13—C15 | 1.5284 (15) | C30—H30C | 0.9800 |
C13—C16 | 1.5289 (16) | C31—H31A | 0.9800 |
C13—C14 | 1.5328 (15) | C31—H31B | 0.9800 |
C14—H14A | 0.9800 | C31—H31C | 0.9800 |
C14—H14B | 0.9800 | C32—H32A | 0.9800 |
C14—H14C | 0.9800 | C32—H32B | 0.9800 |
C15—H15A | 0.9800 | C32—H32C | 0.9800 |
C15—H15B | 0.9800 | C30'—H30D | 0.9800 |
C15—H15C | 0.9800 | C30'—H30E | 0.9800 |
C16—H16A | 0.9800 | C30'—H30F | 0.9800 |
C16—H16B | 0.9800 | C31'—H31D | 0.9800 |
C16—H16C | 0.9800 | C31'—H31E | 0.9800 |
O2—C18 | 1.4235 (13) | C31'—H31F | 0.9800 |
O2—H2O | 0.91 (2) | C32'—H32D | 0.9800 |
N2—C17 | 1.4631 (15) | C32'—H32E | 0.9800 |
N2—C29 | 1.4846 (16) | C32'—H32F | 0.9800 |
N2—H2N | 0.922 (18) | O3—H3C | 0.95 (2) |
C17—C18 | 1.5158 (16) | O3—H3D | 0.98 (3) |
C17—H17A | 0.9900 | O3'—H3C | 0.92 (2) |
C17—H17B | 0.9900 | O3'—H3D | 1.07 (3) |
C2—O1—H1O | 106.9 (13) | O2—C18—H18 | 109.1 |
C1—N1—C13 | 116.25 (8) | C17—C18—H18 | 109.1 |
C1—N1—H1N | 106.8 (9) | C19—C18—H18 | 109.1 |
C13—N1—H1N | 108.2 (9) | C20—C19—C18 | 115.06 (9) |
N1—C1—C2 | 110.42 (9) | C20—C19—H19A | 108.5 |
N1—C1—H1A | 109.6 | C18—C19—H19A | 108.5 |
C2—C1—H1A | 109.6 | C20—C19—H19B | 108.5 |
N1—C1—H1B | 109.6 | C18—C19—H19B | 108.5 |
C2—C1—H1B | 109.6 | H19A—C19—H19B | 107.5 |
H1A—C1—H1B | 108.1 | C25—C20—C21 | 118.82 (10) |
O1—C2—C1 | 109.29 (9) | C25—C20—C19 | 121.57 (10) |
O1—C2—C3 | 110.48 (9) | C21—C20—C19 | 119.61 (10) |
C1—C2—C3 | 109.88 (9) | C22—C21—C20 | 119.82 (10) |
O1—C2—H2 | 109.1 | C22—C21—C26 | 118.08 (10) |
C1—C2—H2 | 109.1 | C20—C21—C26 | 122.09 (10) |
C3—C2—H2 | 109.1 | C23—C22—C21 | 121.98 (11) |
C4—C3—C2 | 114.54 (9) | C23—C22—H22 | 119.0 |
C4—C3—H3A | 108.6 | C21—C22—H22 | 119.0 |
C2—C3—H3A | 108.6 | C22—C23—C24 | 117.61 (10) |
C4—C3—H3B | 108.6 | C22—C23—C27 | 121.08 (11) |
C2—C3—H3B | 108.6 | C24—C23—C27 | 121.30 (11) |
H3A—C3—H3B | 107.6 | C23—C24—C25 | 122.45 (10) |
C5—C4—C9 | 119.21 (11) | C23—C24—H24 | 118.8 |
C5—C4—C3 | 119.98 (11) | C25—C24—H24 | 118.8 |
C9—C4—C3 | 120.79 (11) | C24—C25—C20 | 119.30 (10) |
C6—C5—C4 | 119.40 (11) | C24—C25—C28 | 117.76 (10) |
C6—C5—C10 | 118.77 (11) | C20—C25—C28 | 122.93 (10) |
C4—C5—C10 | 121.81 (11) | C21—C26—H26A | 109.5 |
C7—C6—C5 | 122.16 (12) | C21—C26—H26B | 109.5 |
C7—C6—H6 | 118.9 | H26A—C26—H26B | 109.5 |
C5—C6—H6 | 118.9 | C21—C26—H26C | 109.5 |
C6—C7—C8 | 117.70 (12) | H26A—C26—H26C | 109.5 |
C6—C7—C11 | 121.66 (12) | H26B—C26—H26C | 109.5 |
C8—C7—C11 | 120.64 (12) | C23—C27—H27A | 109.5 |
C7—C8—C9 | 122.21 (12) | C23—C27—H27B | 109.5 |
C7—C8—H8 | 118.9 | H27A—C27—H27B | 109.5 |
C9—C8—H8 | 118.9 | C23—C27—H27C | 109.5 |
C8—C9—C4 | 119.31 (11) | H27A—C27—H27C | 109.5 |
C8—C9—C12 | 118.91 (11) | H27B—C27—H27C | 109.5 |
C4—C9—C12 | 121.74 (11) | C25—C28—H28A | 109.5 |
C5—C10—H10A | 109.5 | C25—C28—H28B | 109.5 |
C5—C10—H10B | 109.5 | H28A—C28—H28B | 109.5 |
H10A—C10—H10B | 109.5 | C25—C28—H28C | 109.5 |
C5—C10—H10C | 109.5 | H28A—C28—H28C | 109.5 |
H10A—C10—H10C | 109.5 | H28B—C28—H28C | 109.5 |
H10B—C10—H10C | 109.5 | N2—C29—C32' | 116.0 (6) |
C7—C11—H11A | 109.5 | N2—C29—C30 | 107.0 (3) |
C7—C11—H11B | 109.5 | N2—C29—C31' | 106.0 (6) |
H11A—C11—H11B | 109.5 | C32'—C29—C31' | 109.9 (3) |
C7—C11—H11C | 109.5 | N2—C29—C32 | 110.3 (3) |
H11A—C11—H11C | 109.5 | C30—C29—C32 | 109.9 (2) |
H11B—C11—H11C | 109.5 | N2—C29—C30' | 105.3 (5) |
C9—C12—H12A | 109.5 | C32'—C29—C30' | 109.8 (3) |
C9—C12—H12B | 109.5 | C31'—C29—C30' | 109.7 (3) |
H12A—C12—H12B | 109.5 | N2—C29—C31 | 110.2 (3) |
C9—C12—H12C | 109.5 | C30—C29—C31 | 109.6 (2) |
H12A—C12—H12C | 109.5 | C32—C29—C31 | 109.7 (2) |
H12B—C12—H12C | 109.5 | C29—C30—H30A | 109.5 |
N1—C13—C15 | 106.23 (8) | C29—C30—H30B | 109.5 |
N1—C13—C16 | 109.07 (9) | H30A—C30—H30B | 109.5 |
C15—C13—C16 | 109.40 (9) | C29—C30—H30C | 109.5 |
N1—C13—C14 | 112.86 (9) | H30A—C30—H30C | 109.5 |
C15—C13—C14 | 108.89 (9) | H30B—C30—H30C | 109.5 |
C16—C13—C14 | 110.27 (10) | C29—C31—H31A | 109.5 |
C13—C14—H14A | 109.5 | C29—C31—H31B | 109.5 |
C13—C14—H14B | 109.5 | H31A—C31—H31B | 109.5 |
H14A—C14—H14B | 109.5 | C29—C31—H31C | 109.5 |
C13—C14—H14C | 109.5 | H31A—C31—H31C | 109.5 |
H14A—C14—H14C | 109.5 | H31B—C31—H31C | 109.5 |
H14B—C14—H14C | 109.5 | C29—C32—H32A | 109.5 |
C13—C15—H15A | 109.5 | C29—C32—H32B | 109.5 |
C13—C15—H15B | 109.5 | H32A—C32—H32B | 109.5 |
H15A—C15—H15B | 109.5 | C29—C32—H32C | 109.5 |
C13—C15—H15C | 109.5 | H32A—C32—H32C | 109.5 |
H15A—C15—H15C | 109.5 | H32B—C32—H32C | 109.5 |
H15B—C15—H15C | 109.5 | C29—C30'—H30D | 109.5 |
C13—C16—H16A | 109.5 | C29—C30'—H30E | 109.5 |
C13—C16—H16B | 109.5 | H30D—C30'—H30E | 109.5 |
H16A—C16—H16B | 109.5 | C29—C30'—H30F | 109.5 |
C13—C16—H16C | 109.5 | H30D—C30'—H30F | 109.5 |
H16A—C16—H16C | 109.5 | H30E—C30'—H30F | 109.5 |
H16B—C16—H16C | 109.5 | C29—C31'—H31D | 109.5 |
C18—O2—H2O | 110.6 (13) | C29—C31'—H31E | 109.5 |
C17—N2—C29 | 116.22 (9) | H31D—C31'—H31E | 109.5 |
C17—N2—H2N | 106.8 (11) | C29—C31'—H31F | 109.5 |
C29—N2—H2N | 109.4 (11) | H31D—C31'—H31F | 109.5 |
N2—C17—C18 | 110.86 (9) | H31E—C31'—H31F | 109.5 |
N2—C17—H17A | 109.5 | C29—C32'—H32D | 109.5 |
C18—C17—H17A | 109.5 | C29—C32'—H32E | 109.5 |
N2—C17—H17B | 109.5 | H32D—C32'—H32E | 109.5 |
C18—C17—H17B | 109.5 | C29—C32'—H32F | 109.5 |
H17A—C17—H17B | 108.1 | H32D—C32'—H32F | 109.5 |
O2—C18—C17 | 108.52 (9) | H32E—C32'—H32F | 109.5 |
O2—C18—C19 | 109.47 (9) | H3C—O3—H3D | 100.9 (19) |
C17—C18—C19 | 111.38 (9) | H3C—O3'—H3D | 97 (2) |
C13—N1—C1—C2 | 169.98 (9) | N2—C17—C18—C19 | −177.64 (9) |
N1—C1—C2—O1 | −59.13 (11) | O2—C18—C19—C20 | −178.38 (9) |
N1—C1—C2—C3 | 179.49 (9) | C17—C18—C19—C20 | 61.61 (12) |
O1—C2—C3—C4 | 64.12 (12) | C18—C19—C20—C25 | −102.29 (12) |
C1—C2—C3—C4 | −175.21 (10) | C18—C19—C20—C21 | 77.93 (13) |
C2—C3—C4—C5 | 85.11 (13) | C25—C20—C21—C22 | −0.39 (16) |
C2—C3—C4—C9 | −95.98 (13) | C19—C20—C21—C22 | 179.39 (10) |
C9—C4—C5—C6 | 0.10 (17) | C25—C20—C21—C26 | −179.24 (10) |
C3—C4—C5—C6 | 179.03 (11) | C19—C20—C21—C26 | 0.55 (16) |
C9—C4—C5—C10 | −178.41 (11) | C20—C21—C22—C23 | −1.02 (17) |
C3—C4—C5—C10 | 0.52 (17) | C26—C21—C22—C23 | 177.87 (10) |
C4—C5—C6—C7 | 0.16 (19) | C21—C22—C23—C24 | 1.29 (17) |
C10—C5—C6—C7 | 178.71 (12) | C21—C22—C23—C27 | −179.10 (11) |
C5—C6—C7—C8 | −0.30 (19) | C22—C23—C24—C25 | −0.17 (17) |
C5—C6—C7—C11 | −179.92 (12) | C27—C23—C24—C25 | −179.78 (11) |
C6—C7—C8—C9 | 0.20 (19) | C23—C24—C25—C20 | −1.20 (17) |
C11—C7—C8—C9 | 179.81 (12) | C23—C24—C25—C28 | 177.42 (11) |
C7—C8—C9—C4 | 0.05 (19) | C21—C20—C25—C24 | 1.46 (16) |
C7—C8—C9—C12 | −177.80 (12) | C19—C20—C25—C24 | −178.32 (10) |
C5—C4—C9—C8 | −0.20 (17) | C21—C20—C25—C28 | −177.09 (10) |
C3—C4—C9—C8 | −179.12 (11) | C19—C20—C25—C28 | 3.13 (16) |
C5—C4—C9—C12 | 177.59 (11) | C17—N2—C29—C32' | 52.0 (7) |
C3—C4—C9—C12 | −1.33 (17) | C17—N2—C29—C30 | −177.7 (3) |
C1—N1—C13—C15 | 177.41 (9) | C17—N2—C29—C31' | −70.2 (8) |
C1—N1—C13—C16 | 59.59 (12) | C17—N2—C29—C32 | 62.7 (3) |
C1—N1—C13—C14 | −63.33 (12) | C17—N2—C29—C30' | 173.6 (6) |
C29—N2—C17—C18 | 170.22 (10) | C17—N2—C29—C31 | −58.6 (3) |
N2—C17—C18—O2 | 61.79 (12) |
Cg2 is the centroid of the benzene ring (C4–C9) of molecule A. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O3 | 0.91 (2) | 1.82 (2) | 2.725 (5) | 173 (2) |
O1—H1O···O3′ | 0.91 (2) | 1.82 (2) | 2.697 (6) | 161 (2) |
O2—H2O···N1 | 0.91 (2) | 1.83 (2) | 2.7273 (13) | 168.0 (19) |
O3—H3C···O2i | 0.95 (2) | 1.83 (2) | 2.753 (3) | 162 (2) |
O3′—H3C···O2i | 0.92 (2) | 1.83 (2) | 2.685 (4) | 153 (2) |
O3—H3D···N2 | 0.98 (3) | 1.87 (3) | 2.827 (3) | 164 (2) |
O3′—H3D···N2 | 1.07 (3) | 1.87 (3) | 2.875 (5) | 155 (2) |
C11—H11B···Cg2ii | 0.98 | 2.90 | 3.7613 (17) | 147 |
Symmetry codes: (i) x, y−1, z; (ii) −x+2, y−1/2, −z+1/2. |
Contact | Distance | Symmetry operation |
O2···H3C | 1.83 | x, 1 + y, z |
H2O···N1 | 1.83 | x, y, z |
N2···H3D | 1.87 | x, y, z |
H26C···H15B | 2.58 | 1 - x, 2 - y, 1 - z |
*H31D···H17B | 2.34 | x, - 1 + y, z |
*H32B···*H30E | 2.50 | 1 - x, 1/2 + y, 1/2 - z |
H24···H3B | 2.39 | -1 + x, y, z |
H26B···H15C | 2.58 | 1 - x, 1 - y, 1 - z |
*H30C···C10 | 3.00 | x, -1 + y, z |
*H31B···H6 | 2.44 | 1 - x, -1/2 + y, 1/2 - z |
*H32D···H11C | 2.48 | 1 - x, 1/2 + y, 1/2 - z |
H1O···*O3' | 1.82 | x, y, z |
H1O···H1B | 2.46 | x, -1 + y, z |
C9···H11B | 2.84 | 2 - x, 1/2 + y, 1/2 - z |
H16C···*O3' | 2.89 | x, 1 + y, z |
The prefix * denotes atoms of the disordered parts of the molecules. |
Acknowledgements
Authors' contributions are as follows. Conceptualization, ANK and IGM; methodology, ANK and IGM; investigation, ANK, MA and TAT; writing (original draft), MA and ANK; writing (review and editing of the manuscript), MA and ANK; visualization, MA, ANK and IGM; funding acquisition, VNK, RMR and ANK; resources, AAA, VNK and RMR; supervision, ANK and MA.
Funding information
This work was supported by Baku State University and the Ministry of Science and Higher Education of the Russian Federation [award No. 075–03–2020-223 (FSSF-2020–0017)].
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